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Shimono, Masanori

Graduate School of Medicine, Department of Human Health Sciences Associate Professor

Shimono, Masanori
list
    Last Updated :2022/09/09

    Basic Information

    Faculty

    • 医学部

    Professional Memberships

    • Organization for Computational Neurosciences
    • Society for Neuroscience
    • THE JAPAN NEUROSCIENCE SOCIETY

    Academic Degree

    • (University of Tokyo)
    • (University of Tokyo)

    Research History

    • From 2017, To Present
      LEADER program researcher
    • From 2017, To Present
      Hakubi researcher
    • From 2017, To Present
      Kyoto University, Associate Professor
    • From 2016, To 2017
      Osaka University
    • From 2015, To 2015
      Massachusett General Hospital
    • From 2013, To 2015
      JSPS, Fellowship Researcher Abroad
    • From 2010, To 2015
      Indiana University
    • From 2011, To 2013
      JSPS, Fellowship Researcher PD
    • From 2009, To 2010
      National Institute of Advanced Industrial Science and Technology
    • From 2007, To 2009
      Japan Soc. for the Promotion of Sci., Fellowship Researcher DC

    Profile

    • Profile

      Message:

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    Website(s) (URL(s))

    researchmap URL

    list
      Last Updated :2022/09/09

      Research

      Research Interests

      • Complex Networks
      • Graph theory
      • Neuroinformatics
      • Multi-Neuron Recording
      • Neuroscience
      • Perception
      • Consciousness
      • Multi-Scale
      • Dynamics
      • Networks
      • Connectome
      • Brain

      Research Areas

      • Life sciences, Neuroscience - general, Free style
      • Life sciences, Neuroscience - general, Free style

      Papers

      • Inhibitory neurons exhibit high controlling ability in the Cortical Microconnectome.
        M. Kajiwara; R. Nomura; F. Goetze; Y. Isomura; M. Kawabata; T. Akutsu; M. Shimono
        PLOS Computational Biology, 2021, Peer-reviewed, Last author, Corresponding author
      • 3D Scanning Technology Bridging Microcircuits And Macroscale Brain Images In 3D Novel Embedding Overlapping (3D-NEO) Protocol.
        S. Ide; M. Kajiwara; H. Imai; M. Shimono
        J. Vis. Exp., 2019, Peer-reviewed, Last author, Corresponding author
      • Efficient communication dynamics on macro-connectome, and the propagation speed
        Masanori Shimono; Naomichi Hatano
        Scientific Reports, 01 Dec. 2018, Peer-reviewed, Lead author, Corresponding author
      • High-Degree Neurons Feed Cortical Computations
        Nicholas M. Timme; Shinya Ito; Maxym Myroshnychenko; Sunny Nigam; Masanori Shimono; Fang-Chin Yeh; Pawel Hottowy; Alan M. Litke; John M. Beggs
        PLOS COMPUTATIONAL BIOLOGY, May 2016, Peer-reviewed
      • Rich-Club Organization in Effective Connectivity among Cortical Neurons
        Sunny Nigam; Masanori Shimono; Shinya Ito; Fang-Chin Yeh; Nicholas Timme; Maxym Myroshnychenko; Christopher C. Lapish; Zachary Tosi; Pawel Hottowy; Wesley C. Smith; Sotiris C. Masmanidis; Alan M. Litke; Olaf Sporns; John M. Beggs
        JOURNAL OF NEUROSCIENCE, Jan. 2016, Peer-reviewed
      • Functional Clusters, Hubs, and Communities in the Cortical Microconnectome
        Masanori Shimono; John M. Beggs
        CEREBRAL CORTEX, Oct. 2015, Peer-reviewed, Lead author, Corresponding author
      • Behavior Modulates Effective Connectivity between Cortex and Striatum
        Alexander Nakhnikian; George V. Rebec; Leslie M. Grasse; Lucas L. Dwiel; Masanori Shimono; John M. Beggs
        PLOS ONE, Mar. 2014, Peer-reviewed
      • Global Mapping of the Whole-Brain Network Underlining Binocular Rivalry
        Masanori Shimono; Kazuhisa Niki
        Brain Connectivity, 01 Apr. 2013, Peer-reviewed, Lead author, Corresponding author
      • Non-uniformity of cell density and networks in the monkey brain.
        Masanori Shimono
        Scientific Reports -- Open Access, 2013, Peer-reviewed, Lead author, Last author, Corresponding author
      • Universal Critical Dynamics in High Resolution Neuronal Avalanche Data
        Nir Friedman; Shinya Ito; Braden A. W. Brinkman; Masanori Shimono; R. E. Lee DeVille; Karin A. Dahmen; John M. Beggs; Thomas C. Butler
        PHYSICAL REVIEW LETTERS, May 2012, Peer-reviewed
      • The Brain Structural Hub of Interhemispheric Information Integration for Visual Motion Perception
        Masanori Shimono; Hiroaki Mano; Kazuhisa Niki
        CEREBRAL CORTEX, Feb. 2012, Peer-reviewed
      • Neural Processes for Intentional Control of Perceptual Switching: A Magnetoencephalography Study
        Masanori Shimono; Keiichi Kitajo; Tsunehiro Takeda
        HUMAN BRAIN MAPPING, Mar. 2011, Peer-reviewed
      • State-Dependent Cortical Synchronization Networks Revealed by TMS-EEG Recordings
        Keiichi Kitajo; Ryohei Miyota; Masanori Shimono; Kentaro Yamanaka; Yoko Yamaguchi
        ADVANCES IN COGNITIVE NEURODYNAMICS (II), 2011, Peer-reviewed
      • MEG feature selection for motion prediction.
        L. Qi; K. Amano; M. Shimono; T. Takeda
        J Jpn Biomag Bioelectromag Soc, 2011, Peer-reviewed
      • Predictability of the successful/unsuccessful in intentional switching of perception.
        M. Shimono; T. Takeda
        J Jpn Biomag Bioelectromag Soc, 2008, Peer-reviewed
      • Functional modulation of power-law distribution in visual perception
        Masanori Shimono; Takashi Owaki; Kaoru Amano; Keiichi Kitajo; Tsunehiro Takeda
        Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, 04 May 2007, Peer-reviewed
      • Functional modulation of power-law distribution in visual perception
        Masanori Shimono; Takashi Owaki; Kaoru Amano; Keiichi Kitajo; Tsunehiro Takeda
        PHYSICAL REVIEW E, May 2007, Peer-reviewed

      Misc.

      • Network of the brain (japanese)
        Olaf Sporns (author; Masanori Shimono
        Misuzu publisher, Apr. 2020, Lead author
      • 実験と理論とシミュレーション (シリーズ白眉対談)
        下野昌宣
        白眉ニュースレター, Apr. 2018
      • 知覚交代の背景にある全脳ネットワーク
        下野昌宣; 仁木和久
        日本ヒト脳機能マッピング学会プログラム・抄録集, 2013
      • Mesoscopic neuronal activity and neuronal network architecture
        Masanori Shimono; John M. Beggs
        NEUROSCIENCE RESEARCH, 2011
      • State-dependency in large-scale propagation of phase resetting of ongoing activity
        Keiichi Kitajo; Yumi Nakagawa; Yutaka Uno; Ryohei Miyota; Masanori Shimono; Kentaro Yamanaka; Yoko Yamaguchi
        NEUROSCIENCE RESEARCH, 2011
      • Changes in frequency-specific cortical network connectivity in open eye and closed eye conditions revealed by TMS-EEG measurement
        Keiichi Kitajo; Ryohei Miyota; Masanori Shimono; Kentaro Yamanaka; Yoko Yamaguchi
        NEUROSCIENCE RESEARCH, 2009
      • MEG信号を用いた知覚交替予測への基盤研究
        下野昌宣; 武田常広
        Vision, 20 Jul. 2007
      • 知覚状態の意図的コントロールに対応する脳活動―知覚交代予測の一試み―
        下野昌宣; 武田常広
        Vision, 20 Jan. 2007

      Presentations

      • Prediction of clinical symptoms based on global cortical thinning patterns in Parkinson's disease.
        Saeko Kikuchi; Masanori Shimono
        organization for computational neuroscience 2021, 05 Jul. 2021
      • Deep neural embedding of neuronal connectivity.
        Arata Shirakami; Masanori Shimono
        organization for computational neuroscience 2021, 04 Jul. 2021
      • 神経接続データのニューラルネットワーク埋め込み
        白上新; 鳥羽拓馬; 中本勲; 長谷武志; 下野 昌宣
        日本生体医工学会, 17 Jun. 2021
      • Prediction of clinical symptoms based on global cortical thinning patterns i n Parkinson's disease
        Saeko Kikuchi; Arata Shirakami; Masanori Shimono
        Japanese Society for Medical and Biological Engineering, 15 Jun. 2021
      • Inhibitory neurons locate at a center of effective cortical networks, and have high ability to control other neurons.
        Motoki Kajiwara; Masanori Shimono
        organization for computational neuroscience 2020, 20 Jul. 2020
      • Neural Network embedding of real Neuronal Networks
        T. Hase; M. Shimono
        NetSci-X 2020, 21 Jan. 2020
      • Excitatory and Inhibitory Information flows on Micriconnectome
        Motoki Kajiwara; Felix Goetz; Akitoshi Seiyama; Masanori Shimon
        Neuro2019, Jul. 2019
      • Multiple-scale networks in brains, and beyond.
        masanori shimono
        K-Connex retreat seminar 2018, Jun. 2018
      • Connecting multi-scale networks in the brain
        masanori shimono
        Bioinformatics seminar series, Apr. 2018, Invited
      • Micro-connectome and cognitive task selectivity
        A. Nakamura; M. Shimono
        Japan Neuroscience Society 2017, 22 Jul. 2017
      • "When" in Macro-connectome and Communicability
        M. Shimono; N. Hatano
        Japan Neuroscience Society 2017, 22 Jul. 2017
      • Micro-connectomics with cognitive task selectivity.
        A. Nakamura; M. Shimono
        Organization for Computational Neuroscience 2017, 18 Jul. 2017
      • Connectomic electrical propagation and Communicability.
        M. Shimono; N. Hatano
        Computational Neuroscience 2017, 18 Jul. 2017
      • Individual differenced in perception can be better explained by resting-state effective connectivity than by functional connectivity.
        Y. Mizuno; M. Kawasaki; M. Shimono; C. Miniussi; Y.O. Okazaki; K. Ueno; C. Suzuki; T. Asamizuya; K. Cheng; K. Kitajo
        Organization for Human Brain Mapping 2017, 26 Jun. 2017
      • “When” on Macro-Connectome and Communicablity.
        masanori shimono
        Network Neuroscience 2017, 21 Jun. 2017
      • Multiple scale networks in the brain
        masanori shimono
        Bioengineering Division, The Japan Society of Mechanical Engineers, 2016, Invited
      • From Information flow to Connectomics
        masanori shimono
        8th International workshop on Biosignal Interprelation, 2016
      • Architectures in the informatic microconnectome
        masanori shimono
        Computational Neurosciences 2016 (Invited talk), 2016, Invited
      • Multiple scale networks in the brain
        masanori shimono
        Neuroscience 2015, 28 Jul. 2015
      • Multiple scale networks of the brain
        masanori shimono
        Advanced Telecommunications Research Institute (Invited talk), 2015, Invited
      • Multiplescale Network of the brain.
        masanori shimono
        Riken BSI (Invited talk), 2015, Invited
      • Nonuniform weights and connectivity patterns on macaque cortical connectome.
        M. Shimono
        Society for Neuroscience 2015, 2015
      • Global delayed propagation of electrical signals in primate cortex
        S. Tajima; M. Shimono
        Society for Neuroscience 2015, 2015
      • Simulating global brain dynamics at the neuronal resolution
        R. Kobayashi; M. Shimono
        Society for Neuroscience 2015, 2015
      • Patterns of information flow in local cortical networks.
        S. Nigam; O. Sporns; M. Shimono; J.M. Beggs
        Organization for Computational Neuroscience Society 2014, 28 Jul. 2014
      • Network community, clusters and hubs in cortical micro circuits.
        M. Shimono; J.M. Beggs
        Organization for Computational Neuroscience Society 2014 (Featured talk), 28 Jul. 2014
      • Global network community and non-uniform cell density in the macaque brain­.
        M. Shimono
        Organization for Computational Neuroscience Society 2014, 28 Jul. 2014
      • Global network community and non-uniform cell density in the macaque monkey brain.
        M. Shimono
        FENS2014, 06 Jul. 2014
      • Global brain networks contrasted by stability of Binocular Rivalry.
        M. Shimono; K. Niki
        Visual Science Society 2014, 17 May 2014
      • Frequency-specific interhemispheric connectivity and perceptual bias in apparent motion perception.
        Y. Mizuno; M. Kawasaki; M. Shimono; C. Miniussi; K. Ueno; C. Suzuki; T. Asamizuya; K. Cheng; K. Kitajo
        Organization for Human Brain Mapping 2014, 16 May 2014
      • Global Structural Brain Network underlining for Binocular Rivalry
        M. Shimono; K. Niki
        Organization for Human Brain Mapping 2013, 19 Jun. 2013
      • Universal principles of topology governing both of structural and effective connectivity.
        M. Shimono; J.M. Beggs
        Neuroinformatics 2012, 11 Sep. 2012
      • Mesoscopic neuronal activity and neuronal network architecture
        M. Shimono; J.M. Beggs
        Annual Meeting of the Japan Neuroscience Society, 2011
      • Functional modulation of power-low distribution and the neuronal basis
        M. Shimono
        SIAM conference on Applications of Dynamical Systems, 2011, Invited
      • Community structure embedded in neuronal network.
        M. Shimono; J.M. Beggs
        NOLTA 2011, 2011, Invited
      • Individual difference of perceptual-bias in bi-stable perception and difference in brain structure.
        M. Shimono; H. Mano; K. Niki
        The 16th Annual Meeting of Human Brain Mapping, 07 Jun. 2010
      • A brain structural hub of interhemispheric information integration for apparent motion perception.
        M. Shimono; H. Mano; K. Niki
        Annual Meeting of Japan Biomagnetism, 2010
      • Subcortical hub for bihemisperic integration of visual perception.
        masanori shimono
        Japan Human Brain Mapping Society, 2010
      • 開眼時と閉眼時の周波数特異的な皮質ネットワーク結合性の変化の経頭蓋磁気刺激-脳波測定による解明
        北城圭一; 御代田亮平; 下野 昌宣; 山中健太郎; 山口陽子
        日本神経科学大会, 2009
      • 視覚情報の統合知覚に関連したMEG応答
        成島大輔; 天野薫; 宇野裕; 下野昌宣; 武田常広
        日本生体磁気学会, 2009
      • MEG feature selection in movement trajectory prediction
        L. Qi; K. Amano; M. Shimono; T. Takeda
        JBiomag2009, 2009
      • Single-trial classification of object category perceptio
        M. Shimono; Y. Yamada; K. Sekihara; T. Takeda; Y. Kamitani
        International Conference on Biomagnetism, 2008
      • MEG signal correlated with perceptual controllability
        下野昌宣; 武田常広
        The 21th Symposium on Biological and Physiological Engineering, 2006

      External funds: others

      • 神経ネットワークの構造に対する実験と理論の融合研究
        卓越研究員制度
        From 01 Apr. 2017, To 31 Mar. 2021
        代表
      list
        Last Updated :2022/09/09

        Education

        Teaching subject(s)

        • From 01 Apr. 2022, To 31 Mar. 2023
          Calculus with Exercises B
          N150, Fall, Institute for Liberal Arts and Sciences, 3
        • From 01 Apr. 2022, To 31 Mar. 2023
          Medical Imaging System Sciences Seminar
          M451, Fall, Graduate School of Medicine, 2
        • From 01 Apr. 2022, To 31 Mar. 2023
          Introduction to Human Health Sciences V
          3205, Spring, Faculty of Medicine, 2
        • From 01 Apr. 2022, To 31 Mar. 2023
          Linear Algebra with Exercises B
          N152, Fall, Institute for Liberal Arts and Sciences, 3
        • From 01 Apr. 2022, To 31 Mar. 2023
          Calculus with Exercises A
          N149, Spring, Institute for Liberal Arts and Sciences, 3
        • From 01 Apr. 2022, To 31 Mar. 2023
          Medical Imaging System Sciences Practice
          M452, Year-long, Graduate School of Medicine, 4
        • From 01 Apr. 2022, To 31 Mar. 2023
          Medical Imaging System Sciences
          M450, Spring, Graduate School of Medicine, 2
        • From 01 Apr. 2022, To 31 Mar. 2023
          Exercise of Signal Processing and Analysis in Medicine
          8019, Spring, Faculty of Medicine, 1
        • From 01 Apr. 2022, To 31 Mar. 2023
          Signal Processing and Analysis in Medicine
          8005, Fall, Faculty of Medicine, 2
        • From 01 Apr. 2022, To 31 Mar. 2023
          Special Seminar of Multidisciplinary Medical Sciences
          M456, Year-long, Graduate School of Medicine, 8
        • From 01 Apr. 2022, To 31 Mar. 2023
          Linear Algebra with Exercises A
          N151, Spring, Institute for Liberal Arts and Sciences, 3
        • From 01 Apr. 2022, To 31 Mar. 2023
          Simulation Sciences in Medicine
          8039, Spring, Faculty of Medicine, 1
        • From 01 Apr. 2022, To 31 Mar. 2023
          Modern Medical Imaging and Image Analysis
          M447, Spring, Graduate School of Medicine, 2
        • From Apr. 2018, To Mar. 2019
          Introduction to numerical simulation
          Spring, 工学研究科
        • From Apr. 2019, To Mar. 2020
          Signal Processing and Analysis in Medicine
          Fall, 医学部(人間健康科学科)
        • From Apr. 2019, To Mar. 2020
          Exercise of Signal Processing and Analysis in Medicine
          Spring, 医学部(人間健康科学科)
        • From Apr. 2019, To Mar. 2020
          Simulation Sciences in Medicine
          Spring, 医学部(人間健康科学科)
        • From Apr. 2019, To Mar. 2020
          Introduction to Numerical Simulation (LIMS)
          Spring, 医学研究科
        • From Apr. 2020, To Mar. 2021
          Signal Processing and Analysis in Medicine
          Fall, 医学部(人間健康科学科)
        • From Apr. 2020, To Mar. 2021
          Exercise of Signal Processing and Analysis in Medicine
          Spring, 医学部(人間健康科学科)
        • From Apr. 2020, To Mar. 2021
          Simulation Sciences in Medicine
          Spring, 医学部(人間健康科学科)
        • From Apr. 2020, To Mar. 2021
          Introduction to Numerical Simulation (LIMS)
          Spring, 医学研究科
        • From Apr. 2021, To Mar. 2022
          Medical Imaging System Sciences
          Spring, 医学研究科(人間健康科学系専攻)
        • From Apr. 2021, To Mar. 2022
          Modern Medical Imaging and Image Analysis
          Spring, 医学研究科(人間健康科学系専攻)
        • From Apr. 2021, To Mar. 2022
          Signal Processing and Analysis in Medicine
          Fall, 医学部(人間健康科学科)
        • From Apr. 2021, To Mar. 2022
          Exercise of Signal Processing and Analysis in Medicine
          Spring, 医学部(人間健康科学科)
        • From Apr. 2021, To Mar. 2022
          Simulation Sciences in Medicine
          Spring, 医学部(人間健康科学科)
        • From Apr. 2021, To Mar. 2022
          Calculus with Exercises A
          Spring, 全学共通科目
        • From Apr. 2021, To Mar. 2022
          Calculus with Exercises B
          Fall, 全学共通科目
        • From Apr. 2021, To Mar. 2022
          Introduction to Numerical Simulation (LIMS)
          Spring, 医学研究科
        • From Apr. 2021, To Mar. 2022
          Linear Algebra with Exercises A
          Spring, 全学共通科目
        • From Apr. 2021, To Mar. 2022
          Linear Algebra with Exercises B
          Fall, 全学共通科目
        list
          Last Updated :2022/09/09

          Academic, Social Contribution

          Committee Memberships

          • From 2021, To Present
            Executive Committee, Japan Society for Medical and Biological Engineering
          • From Sep. 2020, To Present
            Program committee, Organization for Computational Neuroscience
          • From 2017, To Present
            Review Editor, Frontiers In Computational Neuroscience
          • From 2017, To Present
            Review Editor, Frontiers In Computational Neuroscience
          • From 2017, To Present
            Member, Science Advisory Board
          • From 2017, To Present
            会員, 科学諮問委員会
          • From May 2012, To Present
            Review Editor, Guest Associate Editor, Frontiers in Physiology
          • From Mar. 2012, To Present
            Review Editor, Guest Associate Editor, Frontiers in Physiology

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