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Gomi, Ryota

Graduate School of Engineering, Division of Environmental Engineering Assistant Professor

Gomi, Ryota
list
    Last Updated :2022/06/24

    Basic Information

    Faculty

    • 工学部

    Professional Memberships

    • American Society for Microbiology
    • Japan Society on Water Environment

    Academic Degree

    • 修士(工学)(京都大学)
    • 博士(工学)(京都大学)

    ID,URL

    researchmap URL

    list
      Last Updated :2022/06/24

      Research

      Research Topics, Overview of the research

      • Research Topics

        Characterization of antimicrobial-resistant Enterobacteriaceae in environmental waters

      Research Interests

      • One Health
      • Genomic analysis
      • Antimicrobial-resistant bacteria
      • Enterobacteriaceae

      Research Areas

      • Environmental science/Agricultural science, Environmental impact assessment

      Papers

      • Emergence of rare carbapenemases (FRI, GES-5, IMI, SFC and SFH-1) in Enterobacterales isolated from surface waters in Japan
        Ryota Gomi; Yasufumi Matsumura; Michio Tanaka; Masaru Ihara; Yoshinori Sugie; Tomonari Matsuda; Masaki Yamamoto
        Journal of Antimicrobial Chemotherapy, 27 Apr. 2022, Peer-reviewed, Lead author, Corresponding author
      • Chromosomal integration of blaCTX-M genes in diverse Escherichia coli isolates recovered from river water in Japan
        Ryota Gomi; Masaki Yamamoto; Michio Tanaka; Yasufumi Matsumura
        Current Research in Microbial Sciences, Jun. 2022, Peer-reviewed, Lead author, Corresponding author
      • Genomic dissection of Klebsiella pneumoniae infections in hospital patients reveals insights into an opportunistic pathogen
        Claire L. Gorrie; Mirjana Mirčeta; Ryan R. Wick; Louise M. Judd; Margaret M. C. Lam; Ryota Gomi; Iain J. Abbott; Nicholas R. Thomson; Richard A. Strugnell; Nigel F. Pratt; Jill S. Garlick; Kerrie M. Watson; Peter C. Hunter; David V. Pilcher; Steve A. McGloughlin; Denis W. Spelman; Kelly L. Wyres; Adam W. J. Jenney; Kathryn E. Holt
        Nature Communications, May 2022, Peer-reviewed
      • Occurrence of class 1 integrons carrying two copies of blaGES-5 in carbapenem-non-susceptible Citrobacter freundii and Raoultella ornithinolytica isolated from wastewater
        Ryota Gomi; Tomonari Matsuda; Masaki Yamamoto; Michio Tanaka; Thomas Jové; Pei-Hsin Chou; Yasufumi Matsumura
        Journal of Global Antimicrobial Resistance, Jul. 2021, Peer-reviewed, Lead author, Corresponding author
      • Detection of plasmid contigs in draft genome assemblies using customized Kraken databases.
        Ryota Gomi; Kelly L Wyres; Kathryn E Holt
        Microbial Genomics, Apr. 2021, Peer-reviewed, Lead author, Corresponding author
      • Molecular Characterization of a Multidrug-Resistance IncF Plasmid Carrying mcr-3.1 in an Escherichia coli Sequence Type 393 Strain of Wastewater Origin.
        Ryota Gomi; Tomonari Matsuda; Masaki Yamamoto; Michio Tanaka; Satoshi Ichiyama; Minoru Yoneda; Yasufumi Matsumura
        International Journal of Antimicrobial Agents, Jul. 2019, Peer-reviewed, Lead author, Corresponding author
      • Molecular Analysis of a blaIMP-1-Harboring Class 3 Integron in Multidrug-Resistant Pseudomonas fulva.
        Masaki Yamamoto; Yasufumi Matsumura; Ryota Gomi; Tomonari Matsuda; Satoshi Nakano; Miki Nagao; Michio Tanaka; Satoshi Ichiyama
        Antimicrobial agents and chemotherapy, Aug. 2018, Peer-reviewed
      • Pathotyping of Escherichia coli isolated from community toilet wastewater and stored drinking water in a slum in Bangladesh
        H. Harada; Y. Fujimori; R. Gomi; Md.N. Ahsan; S. Fujii; A. Sakai; T. Matsuda
        Letters in Applied Microbiology, 01 Jun. 2018, Peer-reviewed
      • Characteristics of carbapenemase-producing enterobacteriaceae in wastewater revealed by genomic analysis
        Ryota Gomi; Tomonari Matsuda; Masaki Yamamoto; Pei-Hsin Chou; Michio Tanaka; Satoshi Ichiyama; Minoru Yoneda; Yasufumi Matsumura
        Antimicrobial Agents and Chemotherapy, 01 May 2018, Peer-reviewed, Lead author, Corresponding author
      • Occurrence of clinically important lineages, including the ST131 C1-M27 subclone, among extended-spectrum β-lactamase-producing Escherichia coli in wastewater.
        Ryota Gomi; Tomonari Matsuda; Yasufumi Matsumura; Masaki Yamamoto; Michio Tanaka; Satoshi Ichiyama; Minoru Yoneda
        Antimicrobial Agents and Chemotherapy, Aug. 2017, Peer-reviewed, Lead author, Corresponding author
      • Rapid identification of different Escherichia coli ST131 clades.
        Yasufumi Matsumura; Johann D D Pitout; Gisele Peirano; Rebekah DeVinney; Taro Noguchi; Masaki Yamamoto; Ryota Gomi; Tomonari Matsuda; Satoshi Nakano; Miki Nagao; Michio Tanaka; Satoshi Ichiyama
        Antimicrobial Agents and Chemotherapy, Jul. 2017, Peer-reviewed
      • Whole-genome analysis of antimicrobialresistant and extraintestinal pathogenic Escherichia coli in river water
        Ryota Gomi; Tomonari Matsuda; Yasufumi Matsumur; Masaki Yamamoto; Michio Tanaka; Satoshi Ichiyam; Minoru Yoneda
        Applied and Environmental Microbiology, 2017, Peer-reviewed, Lead author
      • Global Escherichia coli Sequence Type 131 Clade with bla(CTX-M-27) Gene
        Yasufumi Matsumura; Johann D. D. Pitout; Ryota Gomi; Tomonari Matsuda; Taro Noguchi; Masaki Yamamoto; Gisele Peirano; Rebekah DeVinney; Patricia A. Bradford; Mary R. Motyl; Michio Tanaka; Miki Nagao; Shunji Takakura; Satoshi Ichiyama
        Emerging Infectious Diseases, Nov. 2016, Peer-reviewed
      • Interspecies Dissemination of a Mobilizable Plasmid Harboring bla(IMP-19) and the Possibility of Horizontal Gene Transfer in a Single Patient
        Masaki Yamamoto; Yasufumi Matsumura; Ryota Gomi; Tomonari Matsuda; Michio Tanaka; Miki Nagao; Shunji Takakura; Shinji Uemoto; Satoshi Ichiyama
        Antimicrobial Agents and Chemotherapy, Sep. 2016, Peer-reviewed
      • Assessment of Genetic Markers for Tracking the Sources of Human Wastewater Associated Escherichia coli in Environmental Waters
        Ahmed Warish; Cheryl Triplett; Ryota Gomi; Pradip Gyawali; Leonie Hodgers; Simon Tozeti
        Environmental Science & Technology, Aug. 2015, Peer-reviewed
      • Characterization of Pathogenic Escherichia coli in River Water by Simultaneous Detection and Sequencing of 14 Virulence Genes
        Ryota Gomi; Tomonari Matsuda; Yuji Fujimori; Hidenori Harada; Yasuto Matsui; Minoru Yoneda
        Environmental Science & Technology, Jun. 2015, Peer-reviewed, Lead author
      • Fecal Source Tracking in Water by Next-Generation Sequencing Technologies Using Host-Specific Escherichia coli Genetic Markers
        Ryota Gomi; Tomonari Matsuda; Yasuto Matsui; Minoru Yoneda
        Environmental Science & Technology, Aug. 2014, Peer-reviewed, Lead author

      Misc.

      • 全ゲノム解析を取り入れた河川水中の薬剤耐性大腸菌の実態解明
        五味 良太; 松田知成; 松村康史; 山本正樹; 田中美智男; 一山智; 米田稔
        第20回日本水環境学会シンポジウム, Sep. 2017
      • 河川水中における病原性大腸菌の実態調査
        五味良太; 松田知成; 松井康人; 米田稔
        第50回日本水環境学会年会, Mar. 2016
      • Microbial source tracking of Escherichia coli reveals humans as a major source of fecal contamination in the Yamato River, Japan
        Gomi, R; Matsuda, T; Matsui, Y; Yoneda, M
        18th International Symposium on Health-Related Water Microbiology, Sep. 2015
      • Microbial Source Tracking of Escherichia coli in the Yamato River Using the Basin Data and Rep-PCR DNA Fingerprinting Analysis
        五味 良太; 松井 康人; 米田 稔
        環境衛生工学研究 : 京都大学環境衛生工学研究会機関誌, Jul. 2013
      • Novel genetic markers for identifying sources of fecal contamination in environmental water
        Gomi, R; Matsuda, T; Matsui, Y; Yoneda, M
        Environmental Health 2013, Mar. 2013
      • Source Identification of Escherichia coli in the Yamato River using Rep-PCR DNA Fingerprinting Analysis
        五味 良太; 松井 康人; 米田 稔
        環境衛生工学研究 : 京都大学環境衛生工学研究会機関誌, Jul. 2012
      • Relation of fecal contamination sources between river water, food and drinking water along Nhue river in Vietnam
        Mai Tanaka; Hidenori Harada; Shigeo Fujii; Min Li Chua; Ryota Gomi
        Proceedings of the Annual Conference of JSWE, 08 Mar. 2019
      • 琵琶湖南湖から検出される大腸菌の全ゲノム解析
        井原賢; 田村太一; 五味良太; 林東範; 劉思瑶; 馬緻宇; 山下尚之; 田中宏明
        第20回日本水環境学会シンポジウム, 2017
      • 大和川における病原性大腸菌の存在実態
        五味良太; 松田知成; 米田稔
        日本水環境学会シンポジウム講演集, 13 Sep. 2016

      External funds: Kakenhi

      • 全ゲノム解析による河川水中の薬剤耐性腸内細菌科細菌の実態解明
        Grant-in-Aid for Early-Career Scientists
        Basic Section 63040:Environmental impact assessment-related
        Kyoto University
        五味 良太
        From 01 Apr. 2019, To 31 Mar. 2021, Granted
        薬剤耐性菌;腸内細菌科細菌;ゲノム解析;河川;腸内細菌科
      • Profiling of multidrug-resistant E. coli in urban sewage in Asia and Africa by using whole-genome sequencing
        Grant-in-Aid for Challenging Research (Exploratory)
        Medium-sized Section 22:Civil engineering and related fields
        Kyoto University
        原田 英典
        From 29 Jun. 2018, To 31 Mar. 2021, Granted
        多剤耐性大腸菌;都市下水;アジア・アフリカ;全ゲノム解析
      • 環境水中の腸内細菌科細菌が保有する薬剤耐性プラスミドの構造解析及び伝達性評価
        Grant-in-Aid for Early-Career Scientists
        Basic Section 63040:Environmental impact assessment-related
        Kyoto University
        五味 良太
        From 01 Apr. 2022, To 31 Mar. 2025, Adopted
      list
        Last Updated :2022/06/24

        Education

        Teaching subject(s)

        • From 01 Apr. 2022, To 31 Mar. 2023
          Advanced Modern Science and Technology (12 times course)
          i060, Fall, Graduate School of Engineering, 1.5
        • From 01 Apr. 2022, To 31 Mar. 2023
          Environmental Engineering 2, Laboratory
          3154, Fall, Faculty of Engineering, 3
        • From 01 Apr. 2022, To 31 Mar. 2023
          Data Analysis in Environmental Engineering
          3290, Fall, Faculty of Engineering, 2
        • From 01 Apr. 2022, To 31 Mar. 2023
          Practice of Basic Informatics (Faculty of Engineering)
          T006, Spring, Institute for Liberal Arts and Sciences, 2
        • From 01 Apr. 2022, To 31 Mar. 2023
          Advanced Modern Science and Technology (8 times course)
          i056, Fall, Graduate School of Engineering, 1
        • From 01 Apr. 2022, To 31 Mar. 2023
          Advanced Modern Science and Technology (4 times course)
          i055, Fall, Graduate School of Engineering, 0.5
        • From Apr. 2018, To Mar. 2019
          Fundamental Chemical Experiments
          Spring, 全学共通科目
        • From Apr. 2018, To Mar. 2019
          Environmental Engineering 2, Laboratory
          Fall, 工学部
        • From Apr. 2019, To Mar. 2020
          Environmental Engineering 2, Laboratory
          Fall, 工学部
        • From Apr. 2020, To Mar. 2021
          Practice of Basic Informatics (Faculty of Engineering) [Global Engineering]
          Spring, 全学共通科目
        • From Apr. 2020, To Mar. 2021
          Advanced Modern Science and Technology (12 times course)
          Fall, 工学研究科
        • From Apr. 2020, To Mar. 2021
          Advanced Modern Science and Technology (4 times course)
          Fall, 工学研究科
        • From Apr. 2020, To Mar. 2021
          Advanced Modern Science and Technology (8 times course)
          Fall, 工学研究科
        • From Apr. 2020, To Mar. 2021
          Environmental Engineering , LaboratoryII
          Fall, 工学部
        • From Apr. 2020, To Mar. 2021
          Data Analysis in Environmental Engineering
          Fall, 工学部
        • From Apr. 2021, To Mar. 2022
          Practice of Basic Informatics (Faculty of Engineering) [Global Engineering]
          Spring, 全学共通科目
        • From Apr. 2021, To Mar. 2022
          Advanced Modern Science and Technology (12 times course)
          Fall, 工学研究科
        • From Apr. 2021, To Mar. 2022
          Advanced Modern Science and Technology (4 times course)
          Fall, 工学研究科
        • From Apr. 2021, To Mar. 2022
          Advanced Modern Science and Technology (8 times course)
          Fall, 工学研究科
        • From Apr. 2021, To Mar. 2022
          Environmental Engineering , LaboratoryII
          Fall, 工学部
        • From Apr. 2021, To Mar. 2022
          Data Analysis in Environmental Engineering
          Fall, 工学部

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