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Aoki, Wataru

Graduate School of Agriculture, Division of Applied Life Sciences Assistant Professor

Aoki, Wataru
list
    Last Updated :2022/11/23

    Basic Information

    Faculty

    • 農学部

    Email Address

    • Email Address

      aoki.wataru.6akyoto-u.ac.jp

    Professional Memberships

    • Japanese Society for Cell Synthesis Research
    • Japan Society for Bioscience, Biotechnology, and Agrochemistry
    • The Society for Biotechnology, Japan
    • THE MOLECULAR BIOLOGY SOCIETY OF JAPAN

    Academic Degree

    • (Kyoto University)
    • (Kyoto University)

    Academic Resume (Graduate Schools)

    • Kyoto University, Graduate School of Agriculture, 修了
    • Kyoto University, Graduate School of Agriculture, 修了

    Academic Resume (Undergraduate School/Majors)

    • Kyoto University, 農学部応用生命科学科, 卒業

    High School

    • High School

      青森高校

    Research History

    • From Dec. 2019, To Present
      Barcodebody Co., Ltd., 技術委員
    • From Jun. 2015, To Present
      京都バイオ計測センター, 招聘研究員
    • From May 2015, To Present
      Kyoto University, Graduate School of Agriculture, 助教
    • From Oct. 2016, To Mar. 2020
      Japan Science and Technology Agency, さきがけ研究員
    • From Apr. 2013, To Apr. 2015
      Japan Society for the Promotion of Science, 日本学術振興会特別研究員PD
    • From Apr. 2010, To Mar. 2013
      Japan Society for the Promotion of Science, 日本学術振興会特別研究員DC1
    • From Feb. 2022, To Present
      京都大学創発PI

    Language of Instruction

    • English
    • Japanese

    ID,URL

    Website(s) (URL(s))

    researchmap URL

    list
      Last Updated :2022/11/23

      Research

      Research Interests

      • 生物工学
      • 微生物学
      • 合成生物学
      • プロテインエンジニアリング
      • 人工細胞
      • ニューラルネットワーク解析
      • セロミクス解析
      • オミックス解析

      Research Areas

      • Life sciences, Genomics
      • Life sciences, Applied microbiology
      • Life sciences, Molecular biology
      • Life sciences, Systems genomics
      • Life sciences, Neuroscience - general

      Papers

      • A critical role of an oxygen-responsive gene for aerobic nitrogenase activity in Azotobacter vinelandii and its application to Escherichia coli
        Ren Takimoto; Yuki Tatemichi; Wataru Aoki; Yuishin Kosaka; Hiroyoshi Minakuchi; Mitsuyoshi Ueda; Kouichi Kuroda
        Scientific reports, 09 Mar. 2022, Peer-reviewed
      • Production of Single-Domain Antibodies in Pichia pastoris
        Yusei Matsuzaki; Kaho Kajiwara; Wataru Aoki; Mitsuyoshi Ueda
        Methods in Molecular Biology, 2022, Peer-reviewed
      • Enzyme systems involved in glucosinolate metabolism in Companilactobacillus farciminis KB1089
        Hiroko Watanabe; Riku Usami; Shigenobu Kishino; Kengo Osada; Yudai Aoki; Hironobu Morisaka; Masatomo Takahashi; Yoshihiro Izumi; Takeshi Bamba; Wataru Aoki; Hiroyuki Suganuma; Jun Ogawa
        Scientific Reports, Dec. 2021, Peer-reviewed
      • Peptide barcoding for one-pot evaluation of sequence–function relationships of nanobodies
        Yusei Matsuzaki; Wataru Aoki; Takumi Miyazaki; Shunsuke Aburaya; Yuta Ohtani; Kaho Kajiwara; Naoki Koike; Hiroyoshi Minakuchi; Natsuko Miura; Tetsuya Kadonosono; Mitsuyoshi Ueda
        Scientific Reports, Dec. 2021, Peer-reviewed, Corresponding author
      • Sustainable Biological Ammonia Production towards a Carbon-Free Society
        Yukio Watanabe; Wataru Aoki; Mitsuyoshi Ueda
        Sustainability, 24 Aug. 2021, Peer-reviewed
      • Specific chemical modification explores dynamic structure of the NqrB subunit in Na+-pumping NADH-ubiquinone oxidoreductase from Vibrio cholerae
        Moe Ishikawa; Takahiro Masuya; Hinako Tanaka; Wataru Aoki; Noam Hantman; Nicole L. Butler; Masatoshi Murai; Blanca Barquera; Hideto Miyoshi
        Biochimica et Biophysica Acta (BBA) - Bioenergetics, Aug. 2021, Peer-reviewed
      • Development of a yeast cell surface display method using the SpyTag/SpyCatcher system
        Kaho Kajiwara; Wataru Aoki; Naoki Koike; Mitsuyoshi Ueda
        Scientific Reports, Dec. 2021, Peer-reviewed
      • Identification of a Putative Sensor Protein Involved in Regulation of Vesicle Production by a Hypervesiculating Bacterium, Shewanella vesiculosa HM13
        Fumiaki Yokoyama; Tomoya Imai; Wataru Aoki; Mitsuyoshi Ueda; Jun Kawamoto; Tatsuo Kurihara
        Frontiers in Microbiology, 18 Feb. 2021, Peer-reviewed
      • A three-component monooxygenase from Rhodococcus wratislaviensis may expand industrial applications of bacterial enzymes
        Makoto Hibi; Dai Fukuda; Chihiro Kenchu; Masutoshi Nojiri; Ryotaro Hara; Michiki Takeuchi; Shunsuke Aburaya; Wataru Aoki; Kimihiko Mizutani; Yoshihiko Yasohara; Mitsuyoshi Ueda; Bunzo Mikami; Satomi Takahashi; Jun Ogawa
        Communications Biology, Dec. 2021, Peer-reviewed
      • Characterization of xanthine oxidase from Cellulosimicrobium funkei possessing hypoxanthine‐metabolizing activity
        I. Kozono; M. Takeuchi; S. Kozono; A. Satomura; W. Aoki; M. Hibi; J. Ogawa
        Journal of Applied Microbiology, Jun. 2021, Peer-reviewed
      • Neuronal subclass-selective proteomic analysis in Caenorhabditis elegans
        Shunsuke Aburaya; Yuji Yamauchi; Takashi Hashimoto; Hiroyoshi Minakuchi; Wataru Aoki; Mitsuyoshi Ueda
        Scientific Reports, Dec. 2020, Peer-reviewed, Corresponding author
      • Construction of engineered yeast producing ammonia from glutamine and soybean residues (okara)
        Yukio Watanabe; Kouichi Kuroda; Yuki Tatemichi; Takeharu Nakahara; Wataru Aoki; Mitsuyoshi Ueda
        AMB Express, Dec. 2020, Peer-reviewed
      • Evaluation of the yeast surface display system for screening of functional nanobodies
        Kaho Kajiwara; Wataru Aoki; Mitsuyoshi Ueda
        AMB Express, Dec. 2020, Peer-reviewed
      • Dramatic dietary shift maintains sequestered toxins in chemically defended snakes
        Tatsuya Yoshida; Rinako Ujiie; Alan H. Savitzky; Teppei Jono; Takato Inoue; Naoko Yoshinaga; Shunsuke Aburaya; Wataru Aoki; Hirohiko Takeuchi; Li Ding; Qin Chen; Chengquan Cao; Tein-Shun Tsai; Anslem de Silva; Dharshani Mahaulpatha; Tao Thien Nguyen; Yezhong Tang; Naoki Mori; Akira Mori
        Proceedings of the National Academy of Sciences, 17 Mar. 2020, Peer-reviewed
      • YAP1 mediates survival of ALK-rearranged lung cancer cells treated with alectinib via pro-apoptotic protein regulation
        Takahiro Tsuji; Hiroaki Ozasa; Wataru Aoki; Shunsuke Aburaya; Tomoko Yamamoto Funazo; Koh Furugaki; Yasushi Yoshimura; Masatoshi Yamazoe; Hitomi Ajimizu; Yuto Yasuda; Takashi Nomizo; Hironori Yoshida; Yuichi Sakamori; Hiroaki Wake; Mitsuyoshi Ueda; Young Hak Kim; Toyohiro Hirai
        Nature Communications, Dec. 2020, Peer-reviewed
      • Selected reaction monitoring for the quantification of Escherichia coli ribosomal proteins
        Yuishin Kosaka; Wataru Aoki; Megumi Mori; Shunsuke Aburaya; Yuta Ohtani; Hiroyoshi Minakuchi; Mitsuyoshi Ueda
        PLOS ONE, 14 Dec. 2020, Peer-reviewed, Corresponding author
      • Improved ammonia production from soybean residues by cell surface-displayed l-amino acid oxidase on yeast
        Yukio Watanabe; Wataru Aoki; Mitsuyoshi Ueda
        Bioscience, Biotechnology, and Biochemistry, 24 Mar. 2021, Peer-reviewed
      • A Zeaxanthin-Producing Bacterium Isolated from the Algal Phycosphere Protects Coral Endosymbionts from Environmental Stress
        Keisuke Motone; Toshiyuki Takagi; Shunsuke Aburaya; Natsuko Miura; Wataru Aoki; Mitsuyoshi Ueda
        mBio, 25 Feb. 2020, Peer-reviewed
      • Domain swapping of complementarity-determining region in nanobodies produced by Pichia pastoris
        Natsuko Miura; Kana Miyamoto; Yuta Ohtani; Kenshi Yaginuma; Shunsuke Aburaya; Yoshinori Kitagawa; Wataru Aoki; Mitsuyoshi Ueda
        AMB Express, Dec. 2019, Peer-reviewed
      • High-throughput identification of peptide agonists against GPCRs by co-culture of mammalian reporter cells and peptide-secreting yeast cells using droplet microfluidics
        Kenshi Yaginuma; Wataru Aoki; Natsuko Miura; Yuta Ohtani; Shunsuke Aburaya; Masato Kogawa; Yohei Nishikawa; Masahito Hosokawa; Haruko Takeyama; Mitsuyoshi Ueda
        Scientific Reports, Dec. 2019, Peer-reviewed
      • Temporal proteome dynamics of Clostridium cellulovorans cultured with major plant cell wall polysaccharides
        Shunsuke Aburaya; Wataru Aoki; Kouichi Kuroda; Hiroshi Minakuchi; Mitsuyoshi Ueda
        BMC Microbiology, Dec. 2019, Peer-reviewed
      • Peptide barcoding for establishment of new types of genotype–phenotype linkages
        Kana Miyamoto; Wataru Aoki; Yuta Ohtani; Natsuko Miura; Shunsuke Aburaya; Yusei Matsuzaki; Kaho Kajiwara; Yoshinori Kitagawa; Mitsuyoshi Ueda
        PLOS ONE, 23 Apr. 2019, Peer-reviewed
      • Evaluation of meter-long monolithic columns for selected reaction monitoring mass spectrometry
        Yuta Ohtani; Shunsuke Aburaya; Hiroyoshi Minakuchi; Natsuko Miura; Wataru Aoki; Mitsuyoshi Ueda
        Journal of Bioscience and Bioengineering, Sep. 2019, Peer-reviewed
      • Engineering Antibodies and Alternative Binders for Therapeutic Uses
        Wataru Aoki
        Yeast Cell Surface Engineering, 2019, Peer-reviewed, Lead author, Last author, Corresponding author
      • Pentenediol-Type Compounds Specifically Bind to Voltage-Dependent Anion Channel 1 in Saccharomyces cerevisiae Mitochondria
        Yufu Unten; Masatoshi Murai; Takenori Yamamoto; Akira Watanabe; Naoya Ichimaru; Shunsuke Aburaya; Wataru Aoki; Yasuo Shinohara; Hideto Miyoshi
        Biochemistry, 26 Feb. 2019, Peer-reviewed
      • Ruegeria sp. Strains Isolated from the Reef-Building Coral Galaxea fascicularis Inhibit Growth of the Temperature-Dependent Pathogen Vibrio coralliilyticus
        Natsuko Miura; Keisuke Motone; Toshiyuki Takagi; Shunsuke Aburaya; Sho Watanabe; Wataru Aoki; Mitsuyoshi Ueda
        Marine Biotechnology, Feb. 2019, Peer-reviewed
      • Detection of betacyanin in red-tube spinach (Spinacia oleracea) and its biofortification by strategic hydroponics
        Sho Watanabe; Yuta Ohtani; Wataru Aoki; Yuko Uno; Yasunori Sukekiyo; Seiichi Kubokawa; Mitsuyoshi Ueda
        PLOS ONE, 07 Sep. 2018, Peer-reviewed
      • Molecular and Physiological Study of Candida albicans by Quantitative Proteome Analysis
        Seiji Shibasaki; Miki Karasaki; Wataru Aoki; Mitsuyoshi Ueda
        Proteomes, 18 Sep. 2018, Peer-reviewed
      • Small RNAs detected in exosomes derived from the MH7A synovial fibroblast cell line with TNF-α stimulation
        Yosuke Takamura; Wataru Aoki; Atsushi Satomura; Seiji Shibasaki; Mitsuyoshi Ueda
        PLOS ONE, 10 Aug. 2018, Peer-reviewed
      • Comparative Proteomic Analysis of Lithospermum erythrorhizon Reveals Regulation of a Variety of Metabolic Enzymes Leading to Comprehensive Understanding of the Shikonin Biosynthetic Pathway
        Kojiro Takanashi; Yukimi Nakagawa; Shunsuke Aburaya; Kenta Kaminade; Wataru Aoki; Yuka Saida-Munakata; Akifumi Sugiyama; Mitsuyoshi Ueda; Kazufumi Yazaki
        Plant and Cell Physiology, 01 Jan. 2019, Peer-reviewed
      • Alectinib Resistance in ALK-Rearranged Lung Cancer by Dual Salvage Signaling in a Clinically Paired Resistance Model
        Takahiro Tsuji; Hiroaki Ozasa; Wataru Aoki; Shunsuke Aburaya; Tomoko Funazo; Koh Furugaki; Yasushi Yoshimura; Hitomi Ajimizu; Ryoko Okutani; Yuto Yasuda; Takashi Nomizo; Kiyoshi Uemasu; Koichi Hasegawa; Hironori Yoshida; Yoshitaka Yagi; Hiroki Nagai; Yuichi Sakamori; Mitsuyoshi Ueda; Toyohiro Hirai; Young Hak Kim
        Molecular Cancer Research, 01 Jan. 2019, Peer-reviewed
      • Protection of Coral Larvae from Thermally Induced Oxidative Stress by Redox Nanoparticles
        Keisuke Motone; Toshiyuki Takagi; Shunsuke Aburaya; Wataru Aoki; Natsuko Miura; Hiroyoshi Minakuchi; Haruko Takeyama; Yukio Nagasaki; Chuya Shinzato; Mitsuyoshi Ueda
        Marine Biotechnology, Aug. 2018, Peer-reviewed
      • One-step nanoimprinted hybrid micro-/nano-structure for in situ protein detection of isolated cell array via localized surface plasmon resonance
        Riyaz Ahmad Mohamed Ali; Wilfred Villariza Espulgar; Wataru Aoki; Shu Jiang; Masato Saito; Mitsuyoshi Ueda; Eiichi Tamiya
        Japanese Journal of Applied Physics, 01 Mar. 2018, Peer-reviewed
      • Metabolite profiling of the fermentation process of "yamahai-ginjo-shikomi" Japanese sake
        Yohei Tatsukami; Hironobu Morisaka; Shunsuke Aburaya; Wataru Aoki; Chihiro Kohsaka; Masafumi Tani; Kiyoo Hirooka; Yoshihiro Yamamoto; Atsushi Kitaoka; Hisashi Fujiwara; Yoshinori Wakai; Mitsuyoshi Ueda
        PLOS ONE, 03 Jan. 2018, Peer-reviewed
      • High-throughput evaluation of T7 promoter variants using biased randomization and DNA barcoding
        Ryo Komura; Wataru Aoki; Keisuke Motone; Atsushi Satomura; Mitsuyoshi Ueda
        PLOS ONE, 07 May 2018, Peer-reviewed
      • Epoxycyclohexenedione-Type Compounds Make Up a New Class of Inhibitors of the Bovine Mitochondrial ADP/ATP Carrier
        Ayaki Aoyama; Masatoshi Murai; Naoya Ichimaru; Shunsuke Aburaya; Wataru Aoki; Hideto Miyoshi
        Biochemistry, 13 Feb. 2018, Peer-reviewed
      • Comparative multi-omics analysis reveals diverse latex-based defense strategies against pests among latex-producing organs of the fig tree (Ficus carica)
        Sakihito Kitajima; Wataru Aoki; Daisuke Shibata; Daisuke Nakajima; Nozomu Sakurai; Kazufumi Yazaki; Ryosuke Munakata; Toki Taira; Masaru Kobayashi; Shunsuke Aburaya; Eric Hyrmeya Savadogo; Susumu Hibino; Haruna Yano
        Planta, Jun. 2018, Peer-reviewed
      • Cellomics approach for high-throughput functional annotation of Caenorhabditis elegans neural network
        Wataru Aoki; Hidenori Matsukura; Yuji Yamauchi; Haruki Yokoyama; Koichi Hasegawa; Ryoji Shinya; Mitsuyoshi Ueda
        Scientific Reports, Dec. 2018, Peer-reviewed, Lead author, Corresponding author
      • Apoptosis-derived membrane vesicles drive the cGAS–STING pathway and enhance type I IFN production in systemic lupus erythematosus
        Yasuhiro Kato; JeongHoon Park; Hyota Takamatsu; Hachirou Konaka; Wataru Aoki; Syunsuke Aburaya; Mitsuyoshi Ueda; Masayuki Nishide; Shohei Koyama; Yoshitomo Hayama; Yuhei Kinehara; Toru Hirano; Yoshihito Shima; Masashi Narazaki; Atsushi Kumanogoh
        Annals of the Rheumatic Diseases, Oct. 2018, Peer-reviewed
      • Pinpoint Chemical Modification of the Quinone-Access Channel of Mitochondrial Complex I via a Two-Step Conjugation Reaction
        Wataru Aoki
        Biochemistry, 2017, Peer-reviewed
      • Molecular changes in appearance of a cancer cell among normal HEK293T cells
        Jihye Chung; Shunsuke Aburaya; Wataru Aoki; Mitsuyoshi Ueda
        Journal of Bioscience and Bioengineering, Mar. 2017, Peer-reviewed
      • Folate Biofortification in Hydroponically Cultivated Spinach by the Addition of Phenylalanine
        Sho Watanabe; Yuta Ohtani; Yohei Tatsukami; Wataru Aoki; Takashi Amemiya; Yasunori Sukekiyo; Seiichi Kubokawa; Mitsuyoshi Ueda
        Journal of Agricultural and Food Chemistry, 14 Jun. 2017, Peer-reviewed
      • Definitive screening design enables optimization of LC–ESI–MS/MS parameters in proteomics
        Shunsuke Aburaya; Wataru Aoki; Hiroyoshi Minakuchi; Mitsuyoshi Ueda
        Bioscience, Biotechnology, and Biochemistry, 02 Dec. 2017, Peer-reviewed
      • Aspartic Proteases and Major Cell Wall Components in Candida albicans Trigger the Release of Neutrophil Extracellular Traps
        Marcin Zawrotniak; Oliwia Bochenska; Justyna Karkowska-Kuleta; Karolina Seweryn-Ozog; Wataru Aoki; Mitsuyoshi Ueda; Andrzej Kozik; Maria Rapala-Kozik
        Frontiers in Cellular and Infection Microbiology, 21 Sep. 2017, Peer-reviewed
      • Ammonia production from amino acid-based biomass-like sources by engineered Escherichia coli
        Yosuke Mikami; Hisanari Yoneda; Yohei Tatsukami; Wataru Aoki; Mitsuyoshi Ueda
        AMB Express, Dec. 2017, Peer-reviewed
      • Transcriptome and proteome analyses provide insight into laticifer's defense of Euphorbia tirucalli against pests
        Sakihito Kitajima; Kenji Miura; Wataru Aoki; Katsuyuki T. Yamato; Toki Taira; Ryuta Murakami; Shunsuke Aburaya
        Plant Physiology and Biochemistry, Nov. 2016, Peer-reviewed
      • The action of ten secreted aspartic proteases of pathogenic yeast Candida albicans on major human salivary antimicrobial peptide, histatin 5
        Oliwia Bochenska; Maria Rapala-Kozik; Natalia Wolak; Wataru Aoki; Mitsuyoshi Ueda; Andrzej Kozik
        Acta Biochimica Polonica, 08 Jul. 2016, Peer-reviewed
      • Specific Methylation of Asp160 (49 kDa subunit) Located inside the Quinone Binding Cavity of Bovine Mitochondrial Complex I
        Masatoshi Murai; Hiroyuki Inaoka; Takahiro Masuya; Shunsuke Aburaya; Wataru Aoki; Hideto Miyoshi
        Biochemistry, 14 Jun. 2016, Peer-reviewed
      • Reduction of Synthetic Ubiquinone QT Catalyzed by Bovine Mitochondrial Complex I Is Decoupled from Proton Translocation
        Kenji Okuda; Masatoshi Murai; Shunsuke Aburaya; Wataru Aoki; Hideto Miyoshi
        Biochemistry, 26 Jan. 2016, Peer-reviewed
      • Inactivation of α1-proteinase inhibitor by Candida albicans aspartic proteases favors the epithelial and endothelial cell colonization in the presence of neutrophil extracellular traps.
        Mariusz Gogol; Dominika Ostrowska; Kinga Klaga; Oliwia Bochenska; Natalia Wolak; Wataru Aoki; Mitsuyoshi Ueda; Andrzej Kozik; Maria Rapala-Kozik
        Acta Biochimica Polonica, 07 Dec. 2015, Peer-reviewed
      • A comparative proteomics study of a synovial cell line stimulated with TNF‐α
        Seiji Shibasaki; Miki Karasaki; Shunsuke Aburaya; Hironobu Morisaka; Yumiko Takeda; Wataru Aoki; Sachie Kitano; Masayasu Kitano; Mitsuyoshi Ueda; Hajime Sano; Tsuyoshi Iwasaki
        FEBS Open Bio, May 2016, Peer-reviewed
      • Single cell trapping and cell–cell interaction monitoring of cardiomyocytes in a designed microfluidic chip
        Wilfred Espulgar; Yoshinori Yamaguchi; Wataru Aoki; Daiki Mita; Masato Saito; Jong-Kook Lee; Eiichi Tamiya
        Sensors and Actuators B: Chemical, Feb. 2015, Peer-reviewed
      • Kinin release from human kininogen by 10 aspartic proteases produced by pathogenic yeast Candida albicans
        Andrzej Kozik; Mariusz Gogol; Oliwia Bochenska; Justyna Karkowska-Kuleta; Natalia Wolak; Wojciech Kamysz; Wataru Aoki; Mitsuyoshi Ueda; Alexander Faussner; Maria Rapala-Kozik
        BMC Microbiology, Dec. 2015, Peer-reviewed
      • Inactivation of the Antifungal and Immunomodulatory Properties of Human Cathelicidin LL-37 by Aspartic Proteases Produced by the Pathogenic Yeast Candida albicans
        Maria Rapala-Kozik; Oliwia Bochenska; Marcin Zawrotniak; Natalia Wolak; Grzegorz Trebacz; Mariusz Gogol; Dominika Ostrowska; Wataru Aoki; Mitsuyoshi Ueda; Andrzej Kozik
        Infection and Immunity, Jun. 2015, Peer-reviewed
      • Inactivation of human kininogen-derived antimicrobial peptides by secreted aspartic proteases produced by the pathogenic yeast Candida albicans
        Oliwia Bochenska; Maria Rapala-Kozik; Natalia Wolak; Wojciech Kamysz; Daria Grzywacz; Wataru Aoki; Mitsuyoshi Ueda; Andrzej Kozik
        Biological Chemistry, 01 Dec. 2015, Peer-reviewed
      • Description of the interaction between Candida albicans and macrophages by mixed and quantitative proteome analysis without isolation
        Nao Kitahara; Hironobu Morisaka; Wataru Aoki; Yumiko Takeda; Seiji Shibasaki; Kouichi Kuroda; Mitsuyoshi Ueda
        AMB Express, Dec. 2015, Peer-reviewed
      • Centrifugal microfluidic platform for single-cell level cardiomyocyte-based drug profiling and screening
        W. Espulgar; W. Aoki; T. Ikeuchi; D. Mita; M. Saito; J.-K. Lee; E. Tamiya
        Lab on a Chip, 2015, Peer-reviewed
      • Oral Immunization Against Candidiasis Using Lactobacillus casei Displaying Enolase 1 from Candida albicans
        Seiji Shibasaki; Miki Karasaki; Senji Tafuku; Wataru Aoki; Tomomitsu Sewaki; Mitsuyoshi Ueda
        Scientia Pharmaceutica, 2014, Peer-reviewed
      • Integrating reductive and synthetic approaches in biology using man-made cell-like compartments
        Wataru Aoki; Masato Saito; Ri-ichiroh Manabe; Hirotada Mori; Yoshinori Yamaguchi; Eiichi Tamiya
        Scientific Reports, May 2015, Peer-reviewed, Lead author, Corresponding author
      • Evaluation of Mdh1 Protein as an Antigenic Candidate for a Vaccine against Candidiasis
        SEIJI SHIBASAKI; WATARU AOKI; TAKASHI NOMURA; MIKI KARASAKI; TOMOMITSU SEWAKI; MITSUYOSHI UEDA
        Biocontrol Science, 2014, Peer-reviewed
      • Time-course proteomic profile ofCandida albicansduring adaptation to a fetal serum
        Wataru Aoki; Tomomi Ueda; Yohei Tatsukami; Nao Kitahara; Hironobu Morisaka; Kouichi Kuroda; Mitsuyoshi Ueda
        Pathogens and Disease, Feb. 2013, Peer-reviewed, Lead author
      • Secreted aspartic peptidases of Candida albicans liberate bactericidal hemocidins from human hemoglobin
        Oliwia Bocheńska; Maria Rąpała-Kozik; Natalia Wolak; Grażyna Braś; Andrzej Kozik; Adam Dubin; Wataru Aoki; Mitsuyoshi Ueda; Paweł Mak
        Peptides, Oct. 2013, Peer-reviewed
      • Elucidation of potentially virulent factors of Candida albicans during serum adaptation by using quantitative time-course proteomics
        Wataru Aoki; Yohei Tatsukami; Nao Kitahara; Kazuma Matsui; Hironobu Morisaka; Kouichi Kuroda; Mitsuyoshi Ueda
        Journal of Proteomics, Oct. 2013, Peer-reviewed, Lead author
      • Detection of Candida albicans by using a designed fluorescence-quenched peptide
        Wataru Aoki; Nao Kitahara; Aika Fujita; Seiji Shibasaki; Hironobu Morisaka; Kouichi Kuroda; Mitsuyoshi Ueda
        Journal of Bioscience and Bioengineering, Nov. 2013, Peer-reviewed, Lead author
      • Characterization of Antimicrobial Peptides toward the Development of Novel Antibiotics
        Wataru Aoki; Mitsuyoshi Ueda
        Pharmaceuticals, 21 Aug. 2013, Peer-reviewed, Lead author
      • Biodefense—New Stage in the Molecular Controlling of Immune System
        Seiji Shibasaki; Wataru Aoki; Mitsuyoshi Ueda
        YAKUGAKU ZASSHI, 01 Nov. 2013, Peer-reviewed
      • Biochemical Analysis and Application of Molecular Display Technology on Candida albicans for Diagnosing and Preventing Candidiasis
        Seiji Shibasaki; Wataru Aoki; Mitsuyoshi Ueda
        YAKUGAKU ZASSHI, 01 Nov. 2013
      • An oral vaccine against candidiasis generated by a yeast molecular display system
        Seiji Shibasaki; Wataru Aoki; Takashi Nomura; Ayuko Miyoshi; Senji Tafuku; Tomomitsu Sewaki; Mitsuyoshi Ueda
        Pathogens and Disease, Dec. 2013, Peer-reviewed
      • Design of a novel antimicrobial peptide activated by virulent proteases
        Wataru Aoki; Nao Kitahara; Natsuko Miura; Hironobu Morisaka; Kouichi Kuroda; Mitsuyoshi Ueda
        New Biotechnology, Sep. 2012, Peer-reviewed, Lead author
      • Design of a Novel Antimicrobial Peptide Activated by Virulent Proteases
        Wataru Aoki; Nao Kitahara; Natsuko Miura; Hironobu Morisaka; Kouichi Kuroda; Mitsuyoshi Ueda
        Chemical Biology & Drug Design, Nov. 2012, Peer-reviewed, Lead author
      • Profiling of adhesive properties of the agglutinin-like sequence (ALS) protein family, a virulent attribute ofCandida albicans
        Wataru Aoki; Nao Kitahara; Natsuko Miura; Hironobu Morisaka; Kouichi Kuroda; Mitsuyoshi Ueda
        FEMS Immunology & Medical Microbiology, Jun. 2012, Peer-reviewed, Lead author
      • Next generation of antimicrobial peptides as molecular targeted medicines
        Wataru Aoki; Kouichi Kuroda; Mitsuyoshi Ueda
        Journal of Bioscience and Bioengineering, Oct. 2012, Peer-reviewed, Lead author
      • Candida albicans Possesses Sap7 as a Pepstatin A-Insensitive Secreted Aspartic Protease
        Wataru Aoki; Nao Kitahara; Natsuko Miura; Hironobu Morisaka; Yoshihiro Yamamoto; Kouichi Kuroda; Mitsuyoshi Ueda
        PLoS ONE, 27 Feb. 2012, Peer-reviewed, Lead author
      • High-throughput screening of improved protease inhibitors using a yeast cell surface display system and a yeast cell chip
        Wataru Aoki; Yuichi Yoshino; Hironobu Morisaka; Keiji Tsunetomo; Hirotaka Koyo; Shinji Kamiya; Noriyuki Kawata; Kouichi Kuroda; Mitsuyoshi Ueda
        Journal of Bioscience and Bioengineering, Jan. 2011, Peer-reviewed, Lead author
      • Comprehensive characterization of secreted aspartic proteases encoded by a virulence gene family in Candida albicans
        Wataru Aoki; Nao Kitahara; Natsuko Miura; Hironobu Morisaka; Yoshihiro Yamamoto; Kouichi Kuroda; Mitsuyoshi Ueda
        The Journal of Biochemistry, Oct. 2011, Peer-reviewed, Lead author
      • Characterization of secreted aspartic proteases of Candida albicans
        Wataru Aoki; Nao Kitahara; Hironobu Morisaka; Natsuko Miura; Kouichi Kuroda; Mitsuyoshi Ueda
        Journal of Bioscience and Bioengineering, Nov. 2009, Peer-reviewed, Lead author
      • Cell-surface modification of non-GMO without chemical treatment by novel GMO-coupled and -separated cocultivation method
        Natsuko Miura; Wataru Aoki; Naoki Tokumoto; Kouichi Kuroda; Mitsuyoshi Ueda
        Applied Microbiology and Biotechnology, Feb. 2009, Peer-reviewed

      Misc.

      • Degradation of proteinaceous components of neutrophil extracellular traps by aspartic proteases secreted by pathogenic yeasts, Candida albicans
        M. Gogol; O. Bochenska; N. Wolak; W. Aoki; M. Ueda; A. Kozik; M. Rapala-Kozik
        FEBS JOURNAL, Sep. 2014
      • EP-P35 Characterization of secreted aspartic proteases of Candida albicans(Section VII Enzyme and Protein Engineering)
        Aoki Wataru; Kitahara Nao; Morisaka Hironobu; Miura Natsuko; Kuroda Kouichi; Ueda Mitsuyoshi
        Journal of bioscience and bioengineering, Nov. 2009, Lead author
      • Nanobody Libraries Using Protein Ligation
        Yuki Takaichi; Kaho Kajiwara; Wataru Aoki; Ueda Mitsuyoshi
        The FASEB Journal, May 2021, Peer-reviewed
      • Peptide barcoding for multiplex evaluation of affinities of nanobody libraries
        Takumi Miyazaki; Yusei Matsuzaki; Mitsuyoshi Ueda; Wataru Aoki
        The FASEB Journal, May 2021, Peer-reviewed, Last author, Corresponding author
      • Development of a Novel Sparse Labeling Method by Machine Learning‐Guided Engineering of Cre‐lox Recombination
        Yuji Yamauchi; Hidenori Matsukura; Mitsuyoshi Ueda; Wataru Aoki
        The FASEB Journal, May 2021, Peer-reviewed, Last author, Corresponding author
      • Selected Reaction Monitoring Method for The Quantification of Escherichia coli Ribosomal Proteins
        Yuishin Kosaka; Megumi Mori; Mitsuyoshi Ueda; Wataru Aoki
        The FASEB Journal, May 2021, Peer-reviewed, Last author, Corresponding author
      • Development and improvement of ‘functional neural cellomics’ to elucidate the structure‐function relationships of neural networks of Caenorhabditis elegans
        Yuji Yamauchi; Wataru Aoki; Mitsuyoshi Ueda
        The FASEB Journal, Apr. 2020, Peer-reviewed
      • Peptide barcoding for high‐throughput functional evaluation of antibodies without immobilization
        Wataru Aoki; Yusei Matsuzaki; Yuta Ohtani; Kaho Kajiwara; Kana Miyamoto; Natsuko Miura; Shunsuke Aburaya; Mitsuyoshi Ueda
        The FASEB Journal, Apr. 2020, Peer-reviewed, Lead author
      • A clinical paired resistant model elucidated novel dual salvage signaling that confers alectinibresistance in ALK-rearranged lung cancer.
        Takahiro Tsuji; Hiroaki Ozasa; Wataru Aoki; Shunsuke Aburaya; Tomoko Funazo; Koh Furugaki; Yasushi Yoshimura; Hitomi Ajimizu; Ryoko Okutani; Yuto Yasuda; Takashi Nomizo; Kiyoshi Uemasu; Koichi Hasegawa; Hironori Yoshida; Yoshitaka Yagi; Hiroki Nagai; Yuichi Sakamori; Mitsuyoshi Ueda; Toyohiro Hirai; Young Hak Kim
        AACR annual meeting 2018, Apr. 2018, Peer-reviewed
      • Temporal quantitative proteome analysis reveals dynamic change of cellular and secreted protein profiles of Clostridium cellulovorans depending on carbon sources
        Aburaya Shunsuke; Aoki Wataru; Kuroda Kouichi; Ueda Mitsuyoshi
        FASEB JOURNAL, Apr. 2017, Peer-reviewed
      • Integrating reductive and synthetic approaches in biology using man-made cell-like compartments
        Wataru Aoki; Ryo Komura; Eiichi Tamiya; Mitsuyoshi Ueda
        New Biotechnology, Jul. 2016, Peer-reviewed, Lead author
      • Analysis of exosomal microRNAs derived from rheumatoid arthritis synovial fibroblasts
        Yosuke Takamura; Atsushi Satomura; Wataru Aoki; Mitsuyoshi Ueda
        New Biotechnology, Jul. 2016, Peer-reviewed
      • Components of Candida albicans cell wall involved in mast cell degranulation and extracellular-trap formation in response to fungal infection
        Dominika Ostrowska; Marcin Zawrotniak; Adrianna Proba; Justyna Karkowska-Kuleta; Oliwia Bochenska; Wataru Aoki; Mitsuyoshi Ueda; Andrzej Kozik; Maria Rapala-Kozik
        New Biotechnology, Jul. 2016, Peer-reviewed
      • Integrating reductive and synthetic approaches in biology using man-made cell-like compartments
        Wataru Aoki; Shun Komura; Eiichi Tamiya; Mitsuyoshi Ueda
        FASEB JOURNAL, Apr. 2016, Peer-reviewed, Lead author
      • Integrating reductive and synthetic approaches in biology using man-made cell-like compartments
        Wataru Aoki; Shun Komura; Eiichi Tamiya; Mitsuyoshi Ueda
        FASEB JOURNAL, Apr. 2016, Peer-reviewed, Lead author
      • Contribution of secreted aspartic proteases of pathogenic yeast Candida albicans to the neutralization of antimicrobial function of human high molecular weight kininogen
        O. Bochenska; M. Rapala-Kozik; N. Wolak; W. Kamysz; D. Grzywacz; W. Aoki; M. Ueda; A. Kozik
        FEBS JOURNAL, Sep. 2014, Peer-reviewed
      • Mixed proteome analysis for clarification of the mechanism of infectious candidiasis
        Nao Kitahara; Hironobu Morisaka; Wataru Aoki; Kouichi Kuroda; Mitsuyoshi Ueda
        FASEB JOURNAL, Apr. 2014, Peer-reviewed
      • Candida albicans exhibits a pepstatin A-insensitive secreted aspartic protease as a virulence factor
        Wataru Aoki; Nao Kitahara; Natsuko Miura; Hironobu Morisaka; Yoshihiro Yamamoto; Kouichi Kuroda; Mitsuyoshi Ueda
        FASEB JOURNAL, Apr. 2012, Peer-reviewed, Lead author
      • CONSTRUCTION OF HIGH-THROUGHPUT SINGLE CELL-BASED SYSTEM FOR SCREENING OF INTERACTIVE MOLECULES
        Wataru Aoki; Kouichi Kuroda; Mitsuyoshi Ueda
        IFPT'6: PROGRESS ON POST-GENOME TECHNOLOGIES, PROCEEDINGS, 2009, Lead author

      Presentations

      • Establishment of peptide barcoding for high-throughput evaluation of sequence–affinity relationships of protein binders
        Miyazaki T; Matsuzaki Y; Aoki W; Ueda M
        生物工学若手研究者の集い(若手会)オンラインセミナー2022, May 2022
      • Droplet microfluidicsによるハイスループットバイオロジーの創出
        第3回バイオナノミクス基盤技術研究会, 2018, Invited
      • Proteome analysis for understanding the cause of rheumatoid arthritis
        Aoki W
        2015 Kyoto University AMGEN Scholars Program, 2015, Invited
      • 好気性窒素固定細菌Azotobacter vinelandiiにおける好気条件で酸素高感受性ニトロゲナーゼの活性を保つメカニズムの解明
        滝本 廉; 立道 祐輝; 青木 航; 小坂 唯心; 水口 博義; 植田 充美; 黒田 浩一
        第44回日本分子生物学会, Dec. 2021
      • 機械学習駆動Cre–loxエンジニアリングによる新規神経スパースラベリング法の開発
        山内悠至; 植田充美; 青木航
        第44回日本分子生物学会, Dec. 2021
      • Yeast cell surface display of nanobody libraries using protein ligation
        Yuki Takaichi; Kaho Kajiwara; Wataru Aoki; Mitsuyoshi Ueda
        Pacifichem 2021, Dec. 2021
      • High-throughput evaluation of nanobody affinities using peptide barcoding
        Takumi Miyazaki; Yusei Matsuzaki; Mitsuyoshi Ueda; Wataru Aoki
        Pacifichem 2021, Dec. 2021
      • Bottom-up genetics for high-throughput reconstruction of biological systems
        Wataru Aoki; Wataru Nakahara; Mitsuyoshi Ueda
        Pacifichem 2021, Dec. 2021
      • Candida albicans新規抗原タンパク質のスクリーニングと免疫誘導能の評価
        芝崎誠司; 唐崎美樹; 青木航; 植田充美
        第94回日本生化学会大会, Nov. 2021
      • Selected reaction monitoring法を用いたリボソーム生合成プロセスの解析
        小坂唯心; 森めぐみ; 植田充美; 青木航
        The 14th Annual Meeting of the Japanese Society for Cell Synthesis Research, Nov. 2021
      • SpyTag/SpyCatcherシステムを用いたナノボディ変異体ライブラリの酵母表層提示
        高市 裕基; 梶原 果穂; 青木 航; 植田 充美
        第73回日本生物工学会大会, Oct. 2021
      • 遊離ナノボディのアフィニティをハイスループットに評価するペプチドバーコーディング
        宮崎拓己; 松崎友星; 青木航; 植田充美
        第73回日本生物工学会大会, Oct. 2021
      • 線虫Caenorhabditis elegansの神経細胞種特異的なプロテオミクス解析
        油屋 駿介; 山内 悠至; 馬場 健史; 植田 充美; 青木 航
        第73回日本生物工学会大会, Oct. 2021
      • 定量的プロテオーム を用いたCandida albicans新規抗原の探索
        芝崎誠司; 唐崎美樹; 青木航; 植田充美
        日本防菌防黴学会第48回年次大会, Sep. 2021
      • シングル人工リボソームの翻訳活性を検出可能な系の構築
        小坂唯心; 宮脇佑実; 森めぐみ; 植田充美; 青木航
        生物工学若手研究者の集い 夏のオンラインセミナー2021, Jul. 2021
      • Nanobody Libraries Using Protein Ligation
        Yuki Takaichi; Kaho Kajiwara; Wataru Aoki; Mitsuyoshi Ueda
        ASBMB 2021, Apr. 2021
      • Peptide barcoding for multiplex evaluation of affinities of nanobody libraries
        Takumi Miyazaki; Yusei Matsuzaki; Mitsuyoshi Ueda; Wataru Aoki
        ASBMB 2021, Apr. 2021
      • Development of a Novel Sparse Labeling Method by Machine Learning-Guided Engineering of Cre-lox Recombination
        YAMAUCHI Yuji; MATSUKURA Hidenori; UEDA Mitsuyoshi; AOKI Wataru
        ASBMB 2021, Apr. 2021
      • Selected Reaction Monitoring Method for The Quantification of Escherichia coli Ribosomal Proteins
        Yuishin Kosaka; Megumi Mori; Mitsuyoshi Ueda; Wataru Aoki
        ASBMB 2021, Apr. 2021
      • ペプチドバーコーディング法による 抗GFPナノボディの結合能に重要な残基の同定
        松崎 友星; 青木 航; 植田 充美
        日本農芸化学会2021年度大会, 18 Mar. 2021
      • 多様な結合能を持つナノボディを試験管内で作製し評価できる「ペプチドバーコーディング法」
        松崎 友星; 青木 航; 植田 充美
        第43回 日本分子生物学会, 02 Dec. 2020
      • L-アミノ酸オキシダーゼ細胞表層提示酵母による食品加工廃棄物からのアンモニア生産効率の向上
        渡邉幸夫; 青木航; 植田充美
        第43回 日本分子生物学会, 02 Dec. 2020
      • リボソームタンパク質の包括的な解析のためのselected reaction monitoring
        小坂唯心; 森めぐみ; 青木航; 植田充美
        第43回 日本分子生物学会, 02 Dec. 2020
      • 網羅的神経機能解析のための確率的Cre-lox組換えの制御法
        山内悠至; 松倉秀典; 青木航; 植田充美
        第43回 日本分子生物学会, 02 Dec. 2020
      • YAP1は抗Apoptosis因子Mcl-1とBcl-xLの発現調節を介してALK陽性肺癌細胞の初期生存を仲介する
        辻 貴宏; 青木 航; 金 永学
        日本肺癌学会, 13 Nov. 2020
      • バイオサイエンスデータベース、10年の軌跡とこれから【第2部】
        谷内江 望; 永野 惇; 青木 航; 伊藤 隆司
        トーゴーの日シンポジウム2020, 05 Oct. 2020, Invited
      • 機能的セル・オミックスによる個体レベルの生命現象の理解
        青木 航
        バイオ計測サイエンス研究部会2020 シンポジウム, 24 Aug. 2020, Invited
      • Development and improvement of ‘functional neural cellomics’ to elucidate the structure-function relationships of neural networks of Caenorhabditis elegans
        Yuji YAMAUCHI; Wataru AOKI; Mitsuyoshi UEDA
        ASBMB 2020, 07 Apr. 2020
      • Peptide barcoding for high-throughput functional evaluation of antibodies without immobilization
        Wataru AOKI; Yusei MATSUZAKI; Yuta OHTANI; Kaho KAJIWARA; Kana MIYAMOTO; Natsuko MIURA; Shunsuke ABURAYA; Mitsuyoshi UEDA
        ASBMB 2020, 07 Apr. 2020
      • リボソーム生合成プロセス解析のための Selected reaction monitoring
        小坂唯心; 森めぐみ; 青木航; 植田充美
        日本農芸化学会2021年度大会, 18 Mar. 2020
      • l-アミノ酸オキシダーゼ細胞表層提示酵母による食品加工廃棄物からの高効率なアンモニア生産
        渡邉幸夫; 青木航; 植田充美
        日本農芸化学会2021年度大会, 18 Mar. 2020
      • 機能的ナノボディ探索に向けた酵母表層提示システムの最適化
        梶原 果穂; 青木 航; 植田 充美
        日本農芸化学会2020年度大会, Mar. 2020
      • 質量分析で生物間相互作用を理解する
        青木 航; 植田 充美
        日本農芸化学会2020年度大会, Mar. 2020
      • 遊離状態のナノボディの結合能をハイスループットに評価できる「ペプチドバーコーディング法」
        松崎 友星; 青木 航; 植田 充美
        日本農芸化学会2020年度大会, Mar. 2020
      • 高感度なSRMプロテオミクスに向けたモノリスカラムの細径ロング化
        大谷 優太; 油屋 駿介; 水口 博義; 三浦 夏子; 青木 航; 植田 充美
        第42回日本分子生物学会年会, Dec. 2019
      • 線虫神経ネットワークの構造・機能連関の包括的理解を志向した「機能的ニューラル・セル・オミックス」の展開
        山内 悠至; 青木 航; 植田 充美
        第42回日本分子生物学会年会, Dec. 2019
      • 機能的セルオミックスによる神経ネットワーク機能の網羅的アノテーション
        青木 航
        「JST さきがけ・統合1 細胞解析のための革新的技術基盤領域」-第5 回成果報告会, Dec. 2019
      • 生細胞内分子クラウディング環境の再構成への試み
        田中 遼治; 青木 航; 植田 充美
        第71回日本生物工学会大会, Sep. 2019
      • ペプチドバーコードを付加した抗体の結合能の定量評価
        松崎 友星; 青木 航; 植田 充美
        第71回日本生物工学会大会, Sep. 2019
      • 機能的ナノボディ探索に向けた酵母表層提示システムの最適化
        梶原 果穂; 青木 航; 植田 充美
        第71回日本生物工学会大会, Sep. 2019
      • ボトムアップジェネティクスによる生命現象のハイスループット再構成
        中原 航; 青木 航; 植田 充美
        第71回日本生物工学会大会, Sep. 2019
      • 1細胞セルオミックスによる多細胞ネットワークが織り成す生命現象の解明
        青木 航
        第71回日本生物工学会大会, Sep. 2019
      • Antioxidant-producing bacteria confer stress tolerance to coral endosymbionts
        Keisuke Motone; Shunsuke Aburaya; Wataru Aoki; Mitsuyoshi Ueda
        Marine Biotechnology Conference 2019, Sep. 2019
      • Cellomics approach for high-throughput functional annotation of Caenorhabditis elegans neural network
        Wataru Aoki; Yuji Yamauchi; Mitsuyoshi Ueda
        第57回日本生物物理学会年会, Sep. 2019
      • モノリステクノロジーが切り開く次世代プロテオミクス・メタボロミクス
        青木 航; 植田 充美
        日本プロテオーム学会2019年大会, Jul. 2019, Invited
      • Optimization of preparation processes of nanobody in yeast
        Kajo Kajiwara; Kana Miyamoto; Wataru Aoki; Mitsuyoshi Ueda
        Jun. 2019
      • High–Throughput Evaluation of Antibody Mutants In Vitro Prepared
        Yusei Matsuzaki; Kanam Miyamoto; Yuta Ohtani; Kaho Kajiwara; Shunsuke Aburaya; Wataru Aoki; Mitsuyoshi Ueda
        ASM Microbe 2019, Jun. 2019
      • Phycosphere microbiome manipulation elucidates bacterial contribution to stress resistance of coral endosymbionts
        Keisuke Motone; Shunsuke Aburaya; Wataru Aoki; Mitsuyoshi Ueda
        ASM Microbe 2019, Jun. 2019
      • Peptide Barcoding for Establishment of New Types of Genotype–Phenotype Linkages
        Wataru Aoki; Kana Miyamoto; Yuta Ohtani; Natsuko Miura; Shunsuke Aburaya; Yusei Matsuzaki; Kaho Kajiwara; Mitsuyoshi Ueda
        ASM Microbe 2019, Jun. 2019
      • Analysis of neural networks of Caenorhabditis elegans by functional cellomics
        Yuji YAMAUCHI; Hidenori MATSUKURA; Wataru AOKI; Mitsuyoshi UEDA
        American Society for Biochemistry and Molecular Biology, Apr. 2019
      • Advantages of proteomics using meter-long monolithic columns with small inner diameter
        Yuta Ohtani; Shunsuke Aburaya; Hiroyoshi Minakuchi; Natsuko Miura; Wataru Aoki; Mitsuyoshi Ueda
        American Society for Biochemistry and Molecular Biology, Apr. 2019
      • Reconstruction of biological subsystems using bottom-up genetics
        Wataru AOKI; Keisuke MOTONE; Mitsuyoshi UEDA
        American Society for Biochemistry and Molecular Biology, Apr. 2019
      • 細径化ロングモノリスカラムによるSRMプロテオミクスの高感度化
        大谷 優太; 油屋 駿介; 水口 博義; 三浦 夏子; 青木 航; 植田 充美
        日本農芸化学会, Mar. 2019
      • マイクロ流路を利用したハイスループット機能的GPCRアッセイの開発
        青木 航; 柳沼 謙志; 三浦 夏子; 小川 雅人; 西川 洋平; 細川 正人; 竹山 春子; 植田 充美
        日本農芸化学会, Mar. 2019
      • Improved proteome and metabolome analysis using monolithic columns
        Wataru Aoki; Mitsuyoshi Ueda
        Kyoto Biomolecular Mass Spectrometry Society, Feb. 2019, Invited
      • モノリステクノロジーによる次世代オミックス解析
        青木 航
        センシング技術コンソーシアム, Feb. 2019, Invited
      • 仮説フリーサイエンスの拡張による生命理解の高速化
        青木 航
        第3回生物機能開発研究所講演会, Dec. 2018, Invited
      • 線虫神経ネットワークのハイスループットアノテーション法の開発
        山内悠至; 松倉秀典; 横山治樹; 青木航; 植田充美
        分子生物学会, Nov. 2018
      • 機能的セロミクスを用いた線虫行動の解析
        松倉 秀典; 山内 悠至; 横山 治樹; 青木 航; 植田 充美
        分子生物学会, Nov. 2018
      • マイクロ流路を利用したハイスループットGPCRリガンドアッセイ
        柳沼 謙志; 三浦 夏子; 青木 航; 小川 雅人; 西川 洋平; 細川 正人; 竹山 春子; 植田 充美
        分子生物学会, Nov. 2018
      • in vitroでのリボソーム生合成のための試み
        森 めぐみ; 宮脇 佑実; 油屋 駿介; 青木 航; 植田 充美
        分子生物学会, Nov. 2018
      • ボトムアップジェネティクスによる生物学的システム再構成のハイスループット化
        青木航; 古村 崚; 元根啓佑; 植田充美
        分子生物学会, Nov. 2018
      • ペプチドバーコードを用いたNanobodyスクリーニングシステムの確立
        宮本 佳奈; 三浦 夏子; 大谷 優太; 柳沼 謙志; 油屋 駿介; 青木 航; 植田 充美
        分子生物学会, Nov. 2018
      • 生物学的システム理解の高速化に向けた コンビナトリアル人工ゲノムデザイン法の提唱
        青木航; 元根啓佑; 植田充美
        「細胞を創る」研究会, Oct. 2018
      • 大腸菌破砕液を用いたリボソーム生合成プロセスの再構成の試み
        森 めぐみ; 宮脇 佑実; 油屋 駿介; 青木 航; 植田 充美
        「細胞を創る」研究会, Oct. 2018
      • Cellomics approach for high-throughput functional annotation of Caenorhabditis elegans neural network
        Wataru Aoki
        Max Planck Florida Institute-JST(PRESTO) Joint Workshop on Neuroscience and Single Cell Research, Oct. 2018, Invited
      • ファンクショナルセロミクスによる神経ネットワークのハイスループットアノテーション
        山内悠至; 松倉秀典; 青木航; 植田充美
        Sep. 2018
      • バイアスドランダム化とDNAバーコード付加によるプロモーター変異体のハイスループット解析
        青木航; 古村崚; 元根啓佑; 植田充美
        日本生物工学会, Sep. 2018
      • 神経ネットワーク機能の網羅的解析を目指した バイアスフリーオプトジェネティクスの開発
        青木 航
        細胞凝集研究会, 27 Jul. 2018, Invited
      • モノリステクノロジーによる次世代プロテオミクス
        青木 航
        基盤医学特論, Jun. 2018, Invited
      • 実験計画法を用いたプロテオミクスにおけるLC-MS/MS最適化法の確立
        油屋駿介; 青木航; 植田充美
        生物工学若手研究者の集い(若手会)夏のセミナー, Jun. 2018
      • 神経ネットワークの網羅的解析に向けたfunctional cellomicsの開発
        青木 航; 山内 悠至; 松倉 秀典; 植田 充美
        生物工学若手研究者の集い(若手会)夏のセミナー, Jun. 2018
      • 海洋資源の有効利用と保全への取り組み―大型藻類の有効利用とサンゴ礁の保護―
        元根 啓佑; 青木 航; 黒田 浩一; 植田 充美
        生物工学若手研究者の集い(若手会)夏のセミナー, Jun. 2018
      • Microbial Production and Functional Evaluation of Peptide-tagged single-domain antibody
        Kana Miyamoto; Natsuko Miura; Yuta Ohtani; Kenshi Yaginuma; Shunsuke Aburaya; Wataru Aoki; Mitsuyoshi Ueda
        American Society for Microbiology, Jun. 2018
      • A Novel Approach of High-throughput GPCR Ligand Assay System
        Kenshi Yaginuma; Natsuko Miura; Wataru Aoki; Mitsuyoshi Ueda
        American Society for Microbiology, Jun. 2018
      • 経時的定量プロテオーム解析を用いた細胞内・分泌タンパク質一斉分析によるClostridium cellulovoransの植物構成多糖適応機構の解析
        油屋 駿介; 青木 航; 黒田 浩一; 植田 充美
        日本農芸化学会, Mar. 2018
      • Pichia pastorisを用いたAffibodyとNanobodyの生産
        宮本 佳奈; 三浦 夏子; 大谷 優太; 柳沼 謙志; 青木 航; 植田 充美
        日本農芸化学会, Mar. 2018
      • 赤茎ホウレンソウの特徴の解析と機能性向上を目指した水耕栽培系の確立
        渡辺 祥; 青木 航; 宇野 祐子; 助清 泰教; 窪川 清一; 植田 充美
        日本農芸化学会, Mar. 2018
      • マイクロ流路を利用したハイスループットGPCRリガンドアッセイ系の開発
        柳沼 謙志; 三浦 夏子; 青木 航; 小川 雅人; 西川 洋平; 細川 正人; 竹山 春子; 植田 充美
        日本農芸化学会, Mar. 2018
      • 細径モノリスカラムを用いた高感度プロテオミクスとその感度評価
        大谷 優太; 藤井 温子; 油屋 駿介; 水口 博義; 三浦 夏子; 青木 航; 植田 充美
        日本農芸化学会, Mar. 2018
      • デザイナーリボソーム構築に向けた試み
        森 めぐみ; 宮脇 佑美; 油屋 駿介; 青木 航; 植田 充美
        日本農芸化学会, Mar. 2018
      • ボトムアップジェネティクスの実現に向けたin vitro転写翻訳システムの改良
        青木 航; 古村 崚; 植田 充美
        日本農芸化学会, Mar. 2018
      • サンゴ共生褐虫藻の単離・培養条件の検討
        元根 啓佑; 三浦 夏子; 高木 俊幸; 青木 航; 植田 充美
        日本農芸化学会, Mar. 2018
      • 神経ネットワークの網羅的解析に向けた“functional cellomics”の開発
        青木 航; 山内 悠至; 松倉 秀典; 万 沢夫; 橋本 崇志; 油屋 駿介; 植田 充美
        日本分子生物学会, Dec. 2017
      • 抗活性酸素剤によるサンゴ幼生の生存率の向上の実現
        元根 啓佑; 高木 俊幸; 油屋 駿介; 青木 航; 三浦 夏子; 竹山 春子; 長崎 幸夫; 新里 宙也; 植田 充美
        日本サンゴ礁学会, Nov. 2017
      • Mixed proteome analysis to elucidate complex symbiotic interactions
        Wataru Aoki; Mitsuyoshi Ueda
        9th International Conference and Expo on Proteomics and Molecular Medicine, Nov. 2017, Invited
      • 遺伝子発現に多様な強度を持つT7プロモーターバリアントの作製
        古村 崚; 青木 航; 元根 啓佑; 植田 充美
        「細胞を創る」研究会, Oct. 2017
      • ニューラルネットワークを網羅的かつハイスループットに解析する新規方法論
        松倉 秀典; 横山 治樹; 青木 航; 植田 充美
        日本生物工学会, Sep. 2017
      • 養液栽培法による非遺伝子組み換えの機能性ホウレンソウの作製
        渡辺 祥; 大谷 優太; 立上 陽平; 青木 航; 雨宮 崇; 助清 泰教; 窪川 清一; 植田 充美
        日本生物工学会, Sep. 2017
      • 「構成的遺伝学」を用いた大腸菌相同組換え機構の解明
        古村 崚; 青木 航; 植田 充美
        日本生物工学会, Sep. 2017
      • メタボロミクス解析を用いた山廃日本酒製造に関わる代謝産物の同定
        油屋 駿介; 立上 陽平; 森坂 裕信; 青木 航; 高阪 千尋; 谷 雅史; 廣岡 青央; 山本 佳宏; 北岡 篤士; 藤原 久志; 若井 芳則; 植田 充美
        日本生物工学会, Sep. 2017
      • 人工細胞を用いた、生命科学における還元的方法と構成的方法の統合
        青木 航; 古村 崚; 植田 充美
        日本生物工学会, Sep. 2017
      • サンゴ共生体の保護を目指した取り組み―抗活性酸素剤による高温ストレス下でのサンゴ幼生の生存率の向上―
        元根 啓佑; 高木 俊幸; 油屋 駿介; 新里 宙也; 長崎 幸夫; 竹山 春子; 青木 航; 植田 充美
        環境微生物系学会合同大会, Aug. 2017
      • 生命動作原理の理解に向けてー新規オミックスアプローチの提案ー
        青木 航
        バイオインフォマティクス相談部会 第一回勉強会, Aug. 2017
      • Folate biofortification in hydroponically cultivated spinach
        Wataru Aoki; Sho Watanabe; Yuta Ohtani; Yohei Tatsukami; Takashi Amemiya; Yasunori Sukekiyo; Seiichi Kubokawa; Mitsuyoshi Ueda
        SHIMADZU Global Innovation Summit 2017, Jul. 2017
      • Proposal toward coral reef protection from global warming: increased survival rate of redox nanoparticle-treated coral larvae under heat stress
        Keisuke Motone; Toshiyuki Takagi; Shunsuke Aburaya; Chuya Shinzato; Yukio Nagasaki; Haruko Takeyama; Wataru Aoki; Mitsuyoshi Ueda
        American Society for Microbiology, Jun. 2017
      • Temporal quantitative proteome analysis reveals dynamic change of cellular and secreted protein profiles of Clostridium cellulovorans depending on carbon sources
        Shunsuke Aburaya; Wataru Aoki; Kouichi Kuroda; Mitsuyoshi Ueda
        American Society for Biochemistry and Molecular Biology, Apr. 2017
      • High-throughput Functional Annotation of the Caenorhabditis elegans Neural Network
        Wataru AOKI; Haruki YOKOYAMA; Hidenori MATSUKURA; Mitsuyoshi UEDA
        American Society for Biochemistry and Molecular Biology, Apr. 2017
      • 養液栽培法によるホウレンソウの栄養機能性向上
        渡辺 祥; 立上 陽平; 大谷 優太; 青木 航; 雨宮 崇; 助清 泰教; 窪川 清一; 植田 充美
        日本農芸化学会, Mar. 2017
      • インフルエンザウイルスの高頻度変異膜タンパク質に対する新規阻害剤スクリーニング系の考案
        西岡 良将; 里村 淳; 青木 航; 黒田 浩一; 植田 充美
        日本農芸化学会, Mar. 2017
      • 関節リウマチのモデル滑膜繊維芽細胞由来のエクソソームマイクロRNAの解析
        髙村 陽介; 里村 淳; 青木 航; 芝崎 誠司; 植田 充美
        日本農芸化学会, Mar. 2017
      • 地球温暖化により消滅の危機にあるサンゴ礁の修復(その1) ― Redox nanoparticle による高温ストレス下でのサンゴ幼生の生存率の向上 ―
        元根 啓佑; 高木 俊幸; 油屋 駿介; 新里 宙也; 長崎 幸夫; 竹山 春子; 青木 航; 植田 充美
        日本農芸化学会, Mar. 2017
      • モノリステクノロジーによる次世代プロテオミクスの展開と新規創薬への応用
        青木 航; 植田 充美
        京都バイオ計測センター研究交流発表会, Mar. 2017, Invited
      • Monolith Technologies for Next Generation Proteomics
        Wataru Aoki
        Second KU-KUGSA Symposium, Dec. 2016, Invited
      • Novel methodology for high-throughput annotation of neural circuits
        横山 治樹; 青木 航; 植田 充美
        日本分子生物学会, Nov. 2016
      • Constructive genetics for ultra-high-throughput molecular biology workflow
        Ryo Komura; Wataru Aoki; Eiichi Tamiya; Mitsuyoshi Ueda
        International Conference on Single Cell Research, Nov. 2016
      • Monolith technologies for next generation proteomics
        Wataru Aoki
        Wageningen University – Kyoto University International Exchange Program, Oct. 2016, Invited
      • TOWARDS SINGLE-CEL LEVEL YEAST-MAMMALIAN SCREENING SYSTEM FOR NOVEL BIOACTIVE PEPTIDES ACTING ON G-PROTEIN COUPLED RECEPTOR
        Takaki Okajima; Wilfred Villariza Espulgar; Wataru Aoki; Masato Saito; Eiichi Tamiya
        MicroTAS, Oct. 2016
      • 意識の謎に光をあてる-オプトジェネティクスの進展-
        青木 航
        京都バイオ計測センターシンポジウム, Aug. 2016, Invited
      • Analysis of exosomal microRNAs derived from rheumatoid arthritis synovial fibroblasts
        Yosuke Takamura; Atsushi Satomura; Wataru Aoki; Mitsuyoshi Ueda
        European Congress on Biotechnology, Jul. 2016
      • Xylan培養時におけるClostridium cellulovoransの細胞内・分泌系の同時経時的プロテオミクス
        油屋 駿介; 青木 航; 黒田 浩一; 植田 充美
        生物工学若手研究者の集い(若手会)夏のセミナー, Jul. 2016
      • Integrating reductive and synthetic approaches in biology using man-made cell-like compartments
        Ryo Komura; Wataru Aoki; Eiichi Tamiya; Mitsuyoshi Ueda
        European Congress on Biotechnology, Jul. 2016
      • Integrating reductive and synthetic approaches in biology using man-made cell-like compartments
        Wataru Aoki; Ryo Komura; Eiichi Tamiya; Mitsuyoshi Ueda
        American Society for Biochemistry and Molecular Biology, Apr. 2016
      • Description of the interaction between Candida albicans and macrophages by mixed and quantitative proteome analysis without isolation
        Nao Kitahara; Wataru Aoki; Hironobu Morisaka; Kouichi Kuroda; Mitsuyoshi Ueda
        日本農芸化学会, Mar. 2016
      • 次世代水素エネルギーの安全キャリアとしての活用を目指した 農林水産廃棄物からのアンモニア大量生産系の構築
        青木 航; 植田 充美
        「知」の集積と活用の場 産学官連携協議会, Mar. 2016
      • Comprehensive proteome analysis toward elucidation of shikonin biosynthetic pathway in Lithospermum erythrorhizon
        中川 友喜美; 高梨 功次郎; 青木 航; 油屋 駿介; 植田 充美; 矢崎 一史
        日本植物生理学会, Mar. 2016
      • Integrating reductive and constructive approaches in biology using artificial cells
        Wataru Aoki
        Integration of Synthetic Biology and Systems Biology of Microbes, Mar. 2016, Invited
      • Synthetic approaches for understanding biological phenomena
        Wataru Aoki
        University of Bordeaux-Kyoto University Mini-symposium on Biomolecular Science, Jan. 2016, Invited
      • Integrating reductive and synthetic approaches in biology using man-made cell-like compartments
        Wataru Aoki; Masato Saito; Eiichi Tamiya
        Pacifichem, Dec. 2015
      • Description of the interaction between Candida albicans and macrophages by mixed and quantitative proteome analysis without isolation
        Nao Kitahara; Wataru Aoki; Hironobu Morisaka; Kouichi Kuroda; Mitsuyoshi Ueda
        日本生物工学会, Oct. 2015
      • Analysis of mechanism in onset of rheumatoid arthritis by proteome analysis with long monolithic capillary column
        Shunsuke Aburaya; Hironobu Morisaka; Yumiko Takeda; Seiji Shibasaki; Wataru Aoki; Hiroyuki Minakuchi; Tsuyoshi Iwasaki; Hajime Sano; Mitsuyoshi Ueda
        日本プロテオーム学会, Jul. 2015
      • 人工細胞と次世代シーケンサーを基盤技術として生命科学における還元的方法と構成的方法を融合する
        青木 航; 古村 崚; 齋藤 真人; 眞鍋 理一郎; 森 浩禎; 山口 佳則; 民谷 栄一
        21世紀大腸菌研究会, Jun. 2015
      • 人工細胞と次世代シーケンサーを活用した、 生命科学における還元的方法と構成的方法の融合
        青木 航
        慶応大学 特別講義, Jan. 2015, Invited
      • SERS analysis of live human neutrophils’ activation using gold nanoparticles
        Tatsuya Ishibashi; Hiroyuki Yosikawa; Daiki Mita; Takuma Horii; Wataru Aoki; Masayuki Niside; Daisuke Ito; Masato Saito; Atsushi Kumanogoh; Eiichi Tamiya
        Japan-Singapore international workshop on nanophotonics, plasmonics, metamaterials, Dec. 2014
      • Integrating reductive and synthetic approaches in biology using man-made cell-like compartments
        Wataru Aoki; Masato Saito; Ri-ichiroh Manabe; Hirotada Mori; Yoshinori Yamaguchi; Eiichi Tamiya
        「細胞を創る」研究会, Nov. 2014
      • Clarification of the macrophage destruction mechanism by opportunistic fungus Candida albicans with novel mixed proteome analysis
        Nao Kitahara; Hironobu Morisaka; Wataru Aoki; Kouichi Kuroda; Mitsuyoshi Ueda
        日本生化学会, Oct. 2014
      • 人工細胞と次世代シーケンサーを基盤技術とした、 生命科学における還元的方法と構成的方法の融合
        青木 航; 齋藤 真人; 眞鍋 理一郎; 森 浩禎; 山口 佳則; 民谷 栄一
        無細胞生命科学研究会, Sep. 2014
      • 超並列1細胞ゲノム解析法の開発と細胞完全再構成への応用
        青木 航; 齋藤 真人; 眞鍋 理一郎; 森 浩禎; 山口 佳則; 民谷 栄一
        バイオ関連化学シンポジウム, Sep. 2014
      • 人工細胞を基盤技術として還元的方法と構成的方法を融合する
        青木 航; 齋藤 真人; 眞鍋 理一郎; 森 浩禎; 山口 佳則; 民谷 栄一
        生物工学若手研究者の集い(若手会)夏のセミナー, Jul. 2014
      • Mixed proteome analysis for clarification of the mechanism of infectious candidiasis
        Nao Kitahara; Hironobu Morisaka; Wataru Aoki; Kouichi Kuroda; Mitsuyoshi Ueda
        American Society for Biochemistry and Molecular Biology, Apr. 2014
      • Elucidation of putative virulent factors of Candida albicans during serum adaptation by using quantitative time-course proteomics
        Nao Kitahara; Wataru Aoki; Hironobu Morisaka; Kouichi Kuroda; Mitsuyoshi Ueda
        日本分子生物学会, Dec. 2013
      • カンジダ症の発病機構解明をめざした時系列共存プロテオーム解析
        北原 奈緒; 森坂 裕信; 青木 航; 黒田 浩一; 植田 充美
        日本生物工学会, Sep. 2013
      • Droplet microfluidicsと次世代シーケンサーによる相同組換えに必要十分な因子の決定
        青木 航
        NGS現場の会, Sep. 2013
      • Proteomic profiling of proteins associated with symbiotic conditions in Mesorhizobium loti
        Yohei Tatsukami; Mami Nambu; Kazuma Matsui; Wataru Aoki; Hironobu Morisaka; Kouichi Kuroda; Mitsuyoshi Ueda
        American Society for Microbiology, May 2013
      • Candida症の診断と予防を目指した Candida albicansの生化学的解析と 分子ディスプレイ技術の応用
        芝崎 誠司; 青木 航; 植田 充美
        日本薬学会, Mar. 2013, Invited
      • Design of a novel antimicrobial agent activated by the virulent proteases of Candida albicans
        青木 航; 北原 奈緒; 三浦 夏子; 森坂 裕信; 黒田 浩一; 植田 充美
        日本細菌学会, Mar. 2013, Invited
      • 時間分解プロテオームによる病原性真菌Candida albicansの血清適応メカニズムの解明
        青木 航; 立上 陽平; 森坂 裕信; 黒田 浩一; 植田 充美
        日本分子生物学会, Dec. 2012
      • 時間分解プロテオームによる病原性真菌Candida albicansの動態解析
        青木 航; 植田 充美
        酵母細胞研究会, Nov. 2012, Invited
      • TIME-COURSE PROTEOMIC PROFILE OF CANDIDA ALBICANS WITH A LONG MONOLITHIC SILICA CAPILLARY COLUMN
        Wataru Aoki; Yohei Tatsukami; Hironobu Morisaka; Kouichi Kuroda; Mitsuyoshi Ueda
        International Joint Symposium on Single-Cell Analysis, Nov. 2012
      • 共生窒素固定細菌Mesorhizobium lotiのプロテオーム解析
        立上 陽平; 松井 一真; 青木 航; 森坂 裕信; 黒田 浩一; 植田 充美
        日本生物工学会, Oct. 2012
      • Design of a novel antimicrobial peptide activated by virulent proteases
        Wataru Aoki; Nao Kitahara; Natsuko Miura; Hironobu Morisaka; Kouichi Kuroda; Mitsuyoshi Ueda
        European Congress on Biotechnology, Sep. 2012
      • 病原性プロテアーゼの存在を感知し、特異的に活性を発揮する新規ドラッグデザイン
        青木 航; 北原奈緒; 植田 充美
        生物工学若手研究者の集い(若手会)夏のセミナー, Jun. 2012
      • Secreted aspartic proteinases of Candida albicans release proinflammatory bradykinin-related peptides from human kininogen
        Wataru Aoki
        American Society for Microbiology, Jun. 2012
      • Candida albicans exhibits a pepstatin A-insensitive secreted aspartic protease as a virulence factor
        Wataru Aoki; Nao Kitahara; Natsuko Miura; Hironobu Morisaka; Yoshihiro Yamamoto; Kouichi Kuroda; Mitsuyoshi Ueda
        American Society for Biochemistry and Molecular Biology, Apr. 2012
      • Proteome analysis of Candida albicans cell wall proteins
        Tomomi Ueda; Aoki Wataru; Nao Kitahara; Hironobu Morisaka; Kouichi Kuroda; Mitsuyoshi Ueda
        日本生物工学会, Sep. 2011
      • Characterization of ALS isozymes of Candida albicans, an opportunistic pathogen
        Wataru Aoki; Nastuko Miura; Hironobu Morisaka; Kouichi Kuroda; Mitsuyoshi Ueda
        日本生化学会, Sep. 2011
      • Characterization of ALS isozymes of Candida albicans, an opportunistic pathogen
        Wataru Aoki; Natsuko Miura; Kouichi Kuroda; Mitsuyoshi Ueda
        American Society for Microbiology, May 2011
      • カンジダ症の原因菌Candida albicansの病原性を解明する
        青木 航
        生物工学若手研究者の集い(若手会)夏のセミナー, Jul. 2010
      • Characterization of Secreted Aspartic Protease Isozymes of Candida albicans, an opportunistic pathogen
        Wataru Aoki; Nao Kitahara; Hironobu Morisaka; Natsuko Miura; Kouichi Kuroda; Mitsuyoshi Ueda
        American Society for Microbiology, May 2010
      • Molecular analysis of secreted aspartic proteases of Candida albicans
        Nao KITAHARA; Wataru AOKI; Hironobu MORISAKA; Natsuko MIURA; Kouichi KURODA; Mitsuyoshi UEDA
        日本農芸化学会, Mar. 2010
      • Characterization of secreted aspartic proteases of Candida albicans
        Wataru Aoki; Nao Kitahara; Hironobu Morisaka; Natsuko Miura; Kouichi Kuroda; Mitsuyoshi Ueda
        APBioChEC, Nov. 2009
      • Characterization of secreted aspartic proteases of Candida albicans
        Wataru Aoki; Nao Kitahara; Hironobu Morisaka; Natsuko Miura; Kouichi Kuroda; Mitsuyoshi Ueda
        日本生化学会, Oct. 2009
      • 抗菌ペプチドと抑制ペプチド
        青木 航
        技術シーズ勉強会, Sep. 2009, Invited
      • Construction of high-throughput single cell-based system for screening of interactive molecules
        Wataru Aoki; Kouichi Kuroda; Mitsuyoshi Ueda
        The International Forum of Post-Genome Technologies (IFPT' 6), Sep. 2009
      • Characterization of secreted aspartic proteases of Candida albicans
        Wataru Aoki; Hironobu Morisaka; Natsuko Miura; Kouichi Kuroda; Mitsuyoshi Ueda
        日本農芸化学会, Mar. 2009
      • Characterization of substrate specificity and protein degradation process of Secreted aspartyl protease from Candida albicans using monolithic chromatography
        Wataru Aoki; Hironobu Morisaka; Mitsuyoshi Ueda
        HPLC2008, Sep. 2008
      • 論文図表を読む作法 : はじめて出会う実験&解析法も正しく解釈! : 生命科学・医学論文をスラスラ読むためのFigure事典
        牛島, 俊和; 中山, 敬一, Contributor, 第7章 網羅的解析
        羊土社, Jul. 2022
      • クリーンエネルギー
        渡邉 幸夫; 青木 航; 植田 充美, Contributor, カーボンフリーバイオアンモニア生産プラットフォームの開発
        Mar. 2022
      • Fungal Biotechnology and Bioengineering
        Shibasaki S; Karasaki M; Aoki W; Ueda M, Contributor, Prompt and convenient preparation of oral vaccines using yeast cell surface display
        Springer, 2020
      • バイオイノベーションに向けて~バイオテクノロジーの新技術からの新しい視点~
        柳沼 謙志; 青木 航; 植田 充美, Contributor, 細胞膜レセプターに対するハイスループットリガンドアッセイの構築
        Mar. 2019
      • Proteomics: Advances in Research and Applications
        Aburaya S; Aoki W; Ueda M, Proteome analysis of soft-biomass microbial-degradation using monolith-based nano-LC/MS/MS
        Nova Science Publishers, 2019
      • Yeast Cell Surface Engineering
        Aoki W, Engineering antibodies and alternative binders for therapeutic uses
        Springer, 2019
      • 人工細胞の創製とその応用
        古村 崚; 青木 航; 植田 充美, Contributor, クレイグ・ベンターの戦略
        Jan. 2017
      • 生物工学会誌
        青木 航; 植田 充美, Contributor, 生命の完全な理解を目指して―構成的遺伝学の提唱によるバイオインターフェイスの新しい視点―
        2016
      • バイオサイエンスとインダストリー
        青木 航, Contributor, 日本農芸化学会大会見聞記
        2016
      • 生物工学会誌
        青木 航, Contributor, 第三の生体触媒
        2015
      • Candida albicans: Symptoms, Causes and Treatment Options
        Aoki W; Ueda M, New developments in the pathogenesis of Candida albicans: characterization of secreted aspartic proteases and profiling of survival mechanism in blood
        Nova Science Publishers, 2013
      • 薬学雑誌
        芝崎 誠司; 青木 航; 植田 充美, Contributor, バイオディフェンス―免疫システム分子制御の新たな局面
        2013
      • 薬学雑誌
        芝崎 誠司; 青木 航; 植田 充美, Contributor, Candida症の診断と予防を目指したCandida albicansの生化学的解析と分子ディスプレイ技術の応用
        2013
      • 酵素工学ニュース
        青木 航, Contributor, 第35回日本分子生物学会年会学術集会報告
        2013
      • バイオエネルギー再燃
        渡邉 幸夫、青木 航, Contributor, カーボンフリーバイオアンモニア燃料の開発
        シーエムシー出版, Nov. 2021
      • 酵素工学ニュース 第86号
        青木 航, Contributor, データ駆動型サイエンスによる高次生命現象の理解
        Oct. 2021
      • 細胞 2021年 10月号
        青木 航, Contributor, 1細胞プロテオミクスの最先端
        Sep. 2021
      • 生物工学会誌 – 99巻6号
        青木 航, Contributor, 機能的セル・オミックスによる個体レベルの生命現象の理解
        日本生物工学会, Jun. 2021
      • 月刊「細胞」2020年11月号
        青木 航, Contributor, ペプチドバーコーディング法による抗体エンジニアリング
        北隆館, Oct. 2020
      • シングルセル解析でなにがわかるか
        青木 航, Contributor, 新規「機能的セロミクス」と「シングルセルゲノム精密編集技術」の融合に向けて
        化学同人, Jul. 2020
      • 細胞表層工学の進展
        青木 航, Contributor, 医薬展開を目指した抗体および非抗体スキャフォールドバインダーの指向性進化
        Apr. 2020
      • バイオイノベーションに向けて~バイオテクノロジーの新技術からの新しい視点~
        青木 航, Contributor, 機能的セロミクスによる線虫脳機能の網羅的アノテーション
        Mar. 2019, Not refereed
      • AI導入によるバイオテクノロジーの発展
        青木 航, Contributor, 脳機能の解明を目指した個体レベルのdata-driven scienceの実装
        Feb. 2018, Not refereed
      • 実験医学
        青木 航, Contributor, 若手研究者が独創的な研究を生み出すために
        Aug. 2017, Not refereed
      • 人工細胞の創製とその応用
        青木 航, Contributor, ボトムアップで細胞を理解する「リバース分子生物学」の提唱
        Jan. 2017, Not refereed
      • 実験を安全に行うために 第8版
        青木 航, Contributor, 2章 試薬の取り扱い
        Jan. 2017, Not refereed

      Industrial Property Rights

      • 特許第5750216号, 新規リンカーを用いた抗菌剤および診断薬
        青木 航

      External funds: Kakenhi

      • Reconstruction and analysis of E. coli homologous recombination by using bottom-up genetics
        Grant-in-Aid for Early-Career Scientists
        Basic Section 43060:System genome science-related
        Kyoto University
        Wataru Aoki
        From 01 Apr. 2019, To 31 Mar. 2021, Project Closed
        合成生物学;Bottom-up genetics;人工細胞;ボトムアップジェネティクス
      • ドライバー遺伝子陽性肺癌における新規治療戦略の開発
        Grant-in-Aid for Scientific Research (C)
        Basic Section 53030:Respiratory medicine-related
        Kyoto University
        小笹 裕晃
        From 01 Apr. 2019, To 31 Mar. 2022, Granted
        肺癌;分子標的治療薬;治療初期生存;抗癌剤耐性;患者由来癌細胞;プロテオーム解析
      • Development of reverse optogenetics and its application for analysis of a neural network related to C. elegans locomotion
        Grant-in-Aid for Challenging Research (Exploratory)
        Kyoto University
        Aoki Wataru
        From 30 Jun. 2017, To 31 Mar. 2019, Project Closed
        optogenetics;reverse optogenetics;functional cellomics;C. elegans;neural network;Connectome;Reverse optogenetics
      • Integrating reductive and synthetic approaches in biology using artificial cells
        Grant-in-Aid for Young Scientists (B)
        Kyoto University;Osaka University
        Wataru Aoki
        From 01 Apr. 2014, To 31 Mar. 2016, Project Closed
        合成生物学;構成的遺伝学;Synthetic biology;遺伝学
      • Elucidation of the pathogenesis of rapidly progressive interstitial pneumonia and development of therapeutic application.
        Grant-in-Aid for Scientific Research (B)
        Basic Section 54020:Connective tissue disease and allergy-related
        Osaka University
        高松 漂太
        From 01 Apr. 2022, To 31 Mar. 2025, Granted
        急速進行性間質性肺炎;MDA5抗体陽性皮膚筋炎;疾患モデルマウス開発;ナノボディー;中和抗体開発
      • Screening of the proteins involved in uptake of ubiquinone in Saccharomyces cerevisiae using synthetic ubiquinone probes
        Grant-in-Aid for Scientific Research (B)
        Basic Section 38040:Bioorganic chemistry-related
        Kyoto University
        村井 正俊
        From 01 Apr. 2022, To 31 Mar. 2025, Granted
        ユビキノン;細胞内輸送;光親和性標識;クリックケミストリー;出芽酵母
      list
        Last Updated :2022/11/23

        Education

        Teaching subject(s)

        • From 01 Apr. 2022, To 31 Mar. 2023
          Macromolecular Bioscience Seminar2
          CB20, Year-long, Graduate School of Agriculture, 3
        • From 01 Apr. 2022, To 31 Mar. 2023
          General Biomacromolecular Chemistry
          5633, Spring, Faculty of Agriculture, 2
        • From 01 Apr. 2022, To 31 Mar. 2023
          Macromolecular Bioscience Seminar1
          CB19, Year-long, Graduate School of Agriculture, 3
        • From 01 Apr. 2022, To 31 Mar. 2023
          Laboratory Course in Biochemistry
          5669, Year-long, Faculty of Agriculture, 3
        • From 01 Apr. 2022, To 31 Mar. 2023
          Experimental Course of Macromolecular Bioscience2
          CC20, Year-long, Graduate School of Agriculture, 6
        • From 01 Apr. 2022, To 31 Mar. 2023
          Experimental Course of Macromolecular Bioscience1
          CC19, Year-long, Graduate School of Agriculture, 6
        • From Apr. 2016, To Mar. 2017
          Fundamental Chemical Experiments
          Spring, 全学共通科目
        • From Apr. 2016, To Mar. 2017
          Experimental Course of Macromolecular Bioscience1
          Year-long, 農学研究科
        • From Apr. 2016, To Mar. 2017
          Experimental Course of Macromolecular Bioscience2
          Year-long, 農学研究科
        • From Apr. 2016, To Mar. 2017
          Experimental Course of Macromolecular Bioscience
          Year-long, 農学研究科
        • From Apr. 2016, To Mar. 2017
          Macromolecular Bioscience Seminar1
          Year-long, 農学研究科
        • From Apr. 2016, To Mar. 2017
          Macromolecular Bioscience Seminar2
          Year-long, 農学研究科
        • From Apr. 2016, To Mar. 2017
          Macromolecular Bioscience Seminar
          Year-long, 農学研究科
        • From Apr. 2016, To Mar. 2017
          Biomacromolecular Chemistry
          Spring, 農学研究科
        • From Apr. 2016, To Mar. 2017
          Laboratory Course in Biochemistry
          Spring, 農学部
        • From Apr. 2017, To Mar. 2018
          Experimental Course of Macromolecular Bioscience1
          Year-long, 農学研究科
        • From Apr. 2017, To Mar. 2018
          Experimental Course of Macromolecular Bioscience2
          Year-long, 農学研究科
        • From Apr. 2017, To Mar. 2018
          Experimental Course of Macromolecular Bioscience
          Year-long, 農学研究科
        • From Apr. 2017, To Mar. 2018
          Macromolecular Bioscience Seminar1
          Year-long, 農学研究科
        • From Apr. 2017, To Mar. 2018
          Macromolecular Bioscience Seminar2
          Year-long, 農学研究科
        • From Apr. 2017, To Mar. 2018
          Macromolecular Bioscience Seminar
          Year-long, 農学研究科
        • From Apr. 2017, To Mar. 2018
          Biomacromolecular Chemistry
          Spring, 農学研究科
        • From Apr. 2017, To Mar. 2018
          Laboratory Course in Biochemistry
          Spring, 農学部
        • From Apr. 2018, To Mar. 2019
          Experimental Course of Macromolecular Bioscience1
          Year-long, 農学研究科
        • From Apr. 2018, To Mar. 2019
          Experimental Course of Macromolecular Bioscience2
          Year-long, 農学研究科
        • From Apr. 2018, To Mar. 2019
          Macromolecular Bioscience Seminar1
          Year-long, 農学研究科
        • From Apr. 2018, To Mar. 2019
          Macromolecular Bioscience Seminar2
          Year-long, 農学研究科
        • From Apr. 2018, To Mar. 2019
          Biomacromolecular Chemistry
          Spring, 農学研究科
        • From Apr. 2018, To Mar. 2019
          Laboratory Course in Biochemistry
          Spring, 農学部
        • From Apr. 2019, To Mar. 2020
          Experimental Course of Macromolecular Bioscience1
          Year-long, 農学研究科
        • From Apr. 2019, To Mar. 2020
          Experimental Course of Macromolecular Bioscience2
          Year-long, 農学研究科
        • From Apr. 2019, To Mar. 2020
          Macromolecular Bioscience Seminar1
          Year-long, 農学研究科
        • From Apr. 2019, To Mar. 2020
          Macromolecular Bioscience Seminar2
          Year-long, 農学研究科
        • From Apr. 2019, To Mar. 2020
          Biomacromolecular Chemistry
          Spring, 農学研究科
        • From Apr. 2019, To Mar. 2020
          Laboratory Course in Biochemistry
          Spring, 農学部
        • From Apr. 2020, To Mar. 2021
          Advanced Applied Biochemistry
          Fall, 農学研究科
        • From Apr. 2020, To Mar. 2021
          General Biomacromolecular Chemistry
          Spring, 農学部
        • From Apr. 2020, To Mar. 2021
          Applied Life Sciences III
          Spring, 全学共通科目
        • From Apr. 2020, To Mar. 2021
          Applied Life Sciences III
          Spring, 農学研究科
        • From Apr. 2020, To Mar. 2021
          Experimental Course of Macromolecular Bioscience1
          Year-long, 農学研究科
        • From Apr. 2020, To Mar. 2021
          Experimental Course of Macromolecular Bioscience2
          Year-long, 農学研究科
        • From Apr. 2020, To Mar. 2021
          Macromolecular Bioscience Seminar1
          Year-long, 農学研究科
        • From Apr. 2020, To Mar. 2021
          Macromolecular Bioscience Seminar2
          Year-long, 農学研究科
        • From Apr. 2020, To Mar. 2021
          Biomacromolecular Chemistry
          Spring, 農学研究科
        • From Apr. 2020, To Mar. 2021
          Structure and Function of Biomacromolecules
          Fall, 農学部
        • From Apr. 2020, To Mar. 2021
          Laboratory Course in Biochemistry
          Year-long, 農学部
        • From Apr. 2021, To Mar. 2022
          Advanced Applied Biochemistry
          Fall, 農学研究科
        • From Apr. 2021, To Mar. 2022
          General Biomacromolecular Chemistry
          Spring, 農学部
        • From Apr. 2021, To Mar. 2022
          Applied Life Sciences III
          Spring, 農学研究科
        • From Apr. 2021, To Mar. 2022
          Experimental Course of Macromolecular Bioscience1
          Year-long, 農学研究科
        • From Apr. 2021, To Mar. 2022
          Experimental Course of Macromolecular Bioscience2
          Year-long, 農学研究科
        • From Apr. 2021, To Mar. 2022
          Macromolecular Bioscience Seminar1
          Year-long, 農学研究科
        • From Apr. 2021, To Mar. 2022
          Macromolecular Bioscience Seminar2
          Year-long, 農学研究科
        • From Apr. 2021, To Mar. 2022
          Biomacromolecular Chemistry
          Spring, 農学研究科
        • From Apr. 2021, To Mar. 2022
          Structure and Function of Biomacromolecules
          Fall, 農学部
        • From Apr. 2021, To Mar. 2022
          Laboratory Course in Biochemistry
          Year-long, 農学部
        list
          Last Updated :2022/11/23

          Academic, Social Contribution

          Committee Memberships

          • From May 2022
            生物工学若手研究者の集い(若手会)オンラインセミナー2022 実行委員, 生物工学若手会
          • From Jul. 2021
            生物工学若手研究者の集い(若手会)夏のオンラインセミナー2021 実行委員, 生物工学若手会
          • From Nov. 2020
            生物工学若手研究者の集い 第三回オンラインセミナー 実行委員, 生物工学若手会
          • From Aug. 2020
            生物工学若手研究者の集い 第二回オンラインセミナー 実行委員, 生物工学若手会
          • From Jul. 2020
            生物工学若手研究者の集い 第一回オンラインセミナー 実行委員, 生物工学若手会
          • From Jan. 2020, To Dec. 2022
            副会長, 生物工学若手会
          • From Dec. 2019, To Present
            生物工学会100周年記念事業準備タスクフォース, 公益社団法人 日本生物工学会
          • From Oct. 2018, To Present
            評議員, 「細胞を創る」研究会
          • From Jan. 2021, To Dec. 2021
            大会実行委員(ジュニア農芸化学会担当), 日本農芸化学会
          • From Jan. 2019, To Dec. 2019
            世話人, 第7回細胞凝集研究会
          • From Jan. 2018, To Dec. 2019
            会計, 生物工学若手会
          • From Jul. 2018, To Jul. 2019
            実行委員長, 生物工学若手研究者の集い(若手会)夏のセミナー2019
          • From Jan. 2018, To Dec. 2018
            プラグラム委員長, 「細胞を創る」研究会
          • From Jan. 2018, To Dec. 2018
            大会実行委員(プログラム編成担当), 日本生物工学会
          • From Jan. 2017, To Dec. 2017
            大会運営事務局長, 「細胞を創る」研究会
          • From Jan. 2016, To Dec. 2017
            ホームページ・フォーラム, 生物工学若手会
          • From Jan. 2016, To Dec. 2016
            大会実行委員(プログラム編成担当), 日本農芸化学会
          • From Jan. 2022, To Present
            会長, 生物工学若手会

          Social Contribution

          • 時間の終わりまで 物質、生命、心と進化する宇宙
            Consultant
            講談社, From 2021
          • 二重螺旋 完全版
            Consultant
            新潮社, From 2015
          • コネクトーム:脳の配線はどのように「わたし」をつくり出すのか
            Consultant
            草思社, From 2015
          • 「遺伝子」
            Lecturer
            NPO法人近畿バイオインダストリー振興会, 三士業の専門家のためのバイオ講座, From 10 Oct. 2015
          • 抗菌ペプチドと抑制ペプチド
            Lecturer
            NPO法人近畿バイオインダストリー振興会議, 技術シーズ勉強会, From Sep. 2009

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