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Ichinose, Natsuhiro

Graduate School of Informatics, Department of Intelligence Science and Technology Program-Specific Associate Professor

Ichinose, Natsuhiro
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    Last Updated :2022/06/28

    Basic Information

    Academic Degree

    • 博士(工学)                        (東京大学)

    Academic Resume (Graduate Schools)

    • 東京大学, 大学院工学系研究科先端学際工学専攻博士課程, 修了
    • 東京電機大学, 大学院工学研究科電子工学専攻修士課程, 修了

    Academic Resume (Undergraduate School/Majors)

    • 東京電機大学, 工学部第一部電子工学科, 卒業

    ID,URL

    researchmap URL

    list
      Last Updated :2022/06/28

      Research

      Research Interests

      • Bioinformatics
      • Neural Network

      Research Areas

      • Life sciences, Systems genomics

      Papers

      • Special Issue on Recent Topics on Mathematical Biology - Focused on Neural Coding. The Hodgkin-Huxley Equations and the Responses to Periodic Stimulation.
        USAMI Teppei; YAMADA Taiji; ICHINOSE Natsuhiro; AIHARA Kazuyuki
        Journal of The Society of Instrument and Control Engineers, 10 Oct. 1995
      • Dynamical Robustness and Its Structural Dependence in Biological Networks
        Natsuhiro Ichinose; Takeshi Kawashima; Tetsushi Yada; Hiroshi Wada
        Journal of Theoretical Biology, Jun. 2021, Peer-reviewed, Lead author
      • Quasiperiodic-Chaotic Neural Networks and Short-Term Analog Memory
        Natsuhiro Ichinose
        International Journal of Bifurcation and Chaos, Jan. 2021, Peer-reviewed, Lead author
      • Asymmetry in indegree and outdegree distributions of gene regulatory networks arising from dynamical robustness
        N. Ichinose; T. Yada; H. Wada
        Physical Review E, Jun. 2018, Peer-reviewed
      • Statistical test of quasiperiodicity in the presence of dynamical noise
        N. Ichinose; Y. Horio; M. Ogawa
        Nonlinear Theory and Its Application, IEICE, Apr. 2018, Peer-reviewed
      • Experimental verification of quasi-periodic-orbit stabilization using a switched-capacitor chaotic neural network circuit
        Y. Horio; N. Ichinose; M. Ogawa
        Nonlinear Theory and Its Application, IEICE, Apr. 2018, Peer-reviewed
      • Estimating optimal sparseness of developmental gene networks using a semi-quantitative model
        ICHINOSE N; YADA T; WADA H
        PLOS ONE, 2017, Peer-reviewed
      • Multiple delayed feedback control of discrete-time quasi-periodic orbits
        Natsuhiro Ichinose; Motomasa Komuro
        IFAC-PapersOnLine, 01 Nov. 2015, Peer-reviewed
      • 非対称結合を有するカオスニューラルネットワークの不安定準周期解安定化の回路実験
        小川雅弘; 堀尾喜彦; 市瀬夏洋; 小室元政
        第28回回路とシステムワークショップ講演論文集, 03 Aug. 2015
      • Tetrahedral Gray Code for Visualization of Genome Information
        Natsuhiro Ichinose; Tetsushi Yada; Osamu Gotoh
        PLOS ONE, Jan. 2014, Peer-reviewed
      • Identification of a new clock-related element EL-box involved in circadian regulation by BMAL1/CLOCK and HES1
        Taichi Ueshima; Takeshi Kawamoto; Kiyomasa K. Honda; Mitsuhide Noshiro; Katsumi Fujimoto; Sanae Nakao; Natsuhiro Ichinose; Seiichi Hashimoto; Osamu Gotoh; Yukio Kato
        GENE, Dec. 2012, Peer-reviewed
      • Large-scale motif discovery using DNA Gray code and equiprobable oligomers
        Natsuhiro Ichinose; Tetsushi Yada; Osamu Gotoh
        BIOINFORMATICS, Jan. 2012, Peer-reviewed
      • Reconstruction of transcription-translation dynamics with a model of gene networks
        N. Ichinose; T. Yada; O. Gotoh; K. Aihara
        JOURNAL OF THEORETICAL BIOLOGY, Dec. 2008, Peer-reviewed
      • Delayed feedback control and phase reduction of unstable quasi-periodic orbits
        Natsuhiro Ichinose; Motomasa Komuro
        Chaos, 18 Sep. 2004, Peer-reviewed
      • Detection of mutual determinism between a pair of spike trains
        Natsuhiro Ichinose; Kazuyuki Aihara
        Biological Cybernetics, 01 Nov. 2001, Peer-reviewed, Lead author
      • Extending the concept of isochrons from oscillatory to excitable systems for modeling an excitable neuron
        Natsuhiro Ichinose; Kazuyuki Aihara; Kevin Judd
        International Journal of Bifurcation and Chaos in Applied Sciences and Engineering, 1998, Peer-reviewed
      • Dynamical cell assembly hypothesis - Theoretical possibility of spatio-temporal coding in the cortex
        H Fujii; H Ito; K Aihara; N Ichinose; M Tsukada
        NEURAL NETWORKS, Nov. 1996, Peer-reviewed
      • An analysis of pulse propagation dynamics in asynchronous chaotic neural networks
        N Ichinose; K Aiharai
        ELECTRONICS AND COMMUNICATIONS IN JAPAN PART III-FUNDAMENTAL ELECTRONIC SCIENCE, Nov. 1995, Peer-reviewed
      • An Analysis on Pulse Propagation Dynamics in Asynchronous Chaotic Neural Networks
        Ichinose Natsuhiro; Aihara Kazuyuki
        The Transactions of the Institute of Electronics, Information and Communication Engineers. A, 25 Mar. 1995, Peer-reviewed
      • ASYNCHRONOUS CHAOTIC NEURAL NETWORKS
        N ICHINOSE; K AIHARA
        TOWARDS THE HARNESSING OF CHAOS, 1994, Peer-reviewed

      Misc.

      • 遺伝子相互作用系の非線形数理解析 (ゲノムサイエンスの新たなる挑戦) -- (第4部 ゲノム科学をめぐる内外の動向)
        市瀬 夏洋; 小林 徹也; 合原 一幸
        蛋白質核酸酵素, Dec. 2001
      • ゲノム・プロテオームダイナミクスの数理 (特集 ゲノムサイエンスの新地平--30億文字の生命設計図を探る)
        小林 徹也; 市瀬 夏洋; 合原 一幸
        数理科学, Aug. 2001
      • Modeling and Complexity in Neural Networks.
        Kazuyuki Aihara; Natsuhiro Ichinose
        J. Artificial Life and Robotics, 1999
      • An analysis of coincidence detector networks
        N Ichinose; K Aihara; Y Okabe
        1995 IEEE INTERNATIONAL CONFERENCE ON NEURAL NETWORKS PROCEEDINGS, VOLS 1-6, 1995, Peer-reviewed
      • AN ANALYSIS ON DYNAMICS OF PULSE-PROPAGATION NETWORKS
        N ICHINOSE; K AIHARA; M KOTANI
        IJCNN '93-NAGOYA : PROCEEDINGS OF 1993 INTERNATIONAL JOINT CONFERENCE ON NEURAL NETWORKS, VOLS 1-3, 1993, Peer-reviewed
      • AI-2-4 Delayed feedback control of unstable quasiperiodic orbits
        Ichinose Natsuhiro; Komuro Motomasa
        Proceedings of the IEICE General Conference, 04 Mar. 2014

      External funds: Kakenhi

      • Generalization of machine learning based on mutational robustness and homeostasis of gene regulatory networks
        Grant-in-Aid for Scientific Research (C)
        Basic Section 61040:Soft computing-related
        Kyoto University
        市瀬 夏洋
        From 01 Apr. 2021, To 31 Mar. 2026, Granted
        機械学習;汎化;遺伝子ネットワーク
      • 複雑ネットワークの視点からの新規細胞タイプの進化
        Grant-in-Aid for Scientific Research (A)
        Medium-sized Section 45:Biology at organismal to population levels and anthropology, and related fields
        University of Tsukuba
        和田 洋
        From 01 Apr. 2018, To 31 Mar. 2023, Granted
        遺伝子制御ネットワーク;遺伝子ネットワーク;新規細胞タイプ;進化;ゲノム;非モデル生物;棘皮動物;発生学的浮動;ウニ;ヒトデ
      • Robustness, flexibility and phase transitions of the gene regulatory network.
        Grant-in-Aid for Scientific Research (B)
        University of Tsukuba
        Hiroshi Wada
        From 10 Jul. 2015, To 31 Mar. 2019, Project Closed
        遺伝子制御ネットワーク;形態進化;棘皮動物;軟体動物;ネットワーク理論;発生システム浮動;遺伝子ネットワーク;ヒトデ;ウニ;幼生骨片;SPILE遺伝子群;新規遺伝子;砂時計モデル;転写制御ネットワーク;新規細胞タイプ
      • Development of novel methods for sequence comparison in the era of massive DNA sequencing data
        Grant-in-Aid for Scientific Research (B)
        National Institute of Advanced Industrial Science and Technology;Kyoto University
        Osamu GOTOH
        From 01 Apr. 2010, To 31 Mar. 2013, Project Closed
        次世代シークエンサー;アラインメント;ゲノム;RNA-Seq;比較ゲノム;スプライシング;アルゴリズム;アセスメント;配列比較;アライメント;遺伝子発見;選択的スプライシング;生物進化
      • 転写制御の符号論的理解
        Grant-in-Aid for Challenging Exploratory Research
        Kyoto University
        市瀬 夏洋
        Project Closed
        生体生命情報学;ゲノム;転写制御
      • The systematic approach for the understanding of dynamic aspects of chromosome VI of S.cerevisiae
        Grant-in-Aid for Scientific Research (B)
        Tokyo Institute of Technology;The Institute of Physical and Chemical Research
        Katsuhiko SHIRAHIGE
        Project Closed
        ChIP-chip;DNAアレイ;コヒーシン;Smc5;6;細胞周期;染色体;DNAチップ;染色体免疫沈降;染色体構造;染色体動態;複製制御;レプリコン構造;ゲノム解析;染色体代謝;DNAchip;染色体複製;染色体分配, ChIP-chip;DNA array;cohesin;Smc5;6;cell cycle;chromosome;DNA chip;chromatin immuno-precipitation
      • 昆虫の複雑形態の多様性に関する画像解析と数理モデル化
        Grant-in-Aid for Exploratory Research
        The University of Tokyo
        合原 一幸
        Project Closed
        昆虫;形態;画像データ;数理モデル;差分微分代数方程式;反復関数系;カオス;多様性
      • 神経回路網を基にしたスパイク列による複合通信に関する研究
        Grant-in-Aid for Encouragement of Young Scientists (A)
        The University of Tokyo
        市瀬 夏洋
        Project Closed
        神経回路網モデル;スパイク列;複合通信;コインシデンス・ディテクタ;非同期型神経回路;スパイク重畳;決定論性;決定論的相関
      • No-linear systematic understanding of genome-protein dynamics
        Grant-in-Aid for Scientific Research on Priority Areas
        Biological Sciences
        The University of Tokyo
        Hitoshi IBA
        Project Closed
        遺伝的アルゴリズム;遺伝的プログラミング;進化論的計算手法;対話型進化論的手法;遺伝子ネットワーク;ネットワーク推定;ゆらぎ;摂動;DNAマイクロアレイ;非線型ダイナミクス;安定性解析;分岐解析;人工遺伝子ネットワーク;非線形ダイナミクス;非線形力学系;ネットワーク再構成;分岐理論;数理モデリング, gene regulatory network;evolutionary computation;non-linear dynamics;genetic algorithms;genetic programming;3D visualization;genome switching network;S-system

      External funds: others

      • 複雑系数理モデル学の基礎理論構築とそ の分野横断的科学技術応用
        最先端研究開発支援プログラム
        From 2009, To 2013
        合原一幸
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        Last Updated :2022/06/28

        Education

        Teaching subject(s)

        • From 01 Apr. 2022, To 31 Mar. 2023
          Basic Informatics (General)
          T009, Fall, Institute for Liberal Arts and Sciences, 2
        • From 01 Apr. 2022, To 31 Mar. 2023
          Basic Informatics (General)
          T009, Spring, Institute for Liberal Arts and Sciences, 2
        • From 01 Apr. 2022, To 31 Mar. 2023
          Informatics Fundamentals & Practice
          T016, Spring, Institute for Liberal Arts and Sciences, 2
        • From 01 Apr. 2022, To 31 Mar. 2023
          Basic Informatics (Faculty of Engineering)
          T013, Fall, Institute for Liberal Arts and Sciences, 2
        • From 01 Apr. 2022, To 31 Mar. 2023
          Computational and cognitive neuroscience
          3163, Spring, Graduate School of Informatics, 2
        • From Apr. 2012, To Mar. 2013
          Introduction to Bioinformatics
          Spring, 情報学研究科
        • From Apr. 2018, To Mar. 2019
          Computational and cognitive neuroscience
          Spring, 情報学研究科
        • From Apr. 2019, To Mar. 2020
          Computational and cognitive neuroscience
          Spring, 情報学研究科
        • From Apr. 2020, To Mar. 2021
          Computational and cognitive neuroscience
          Spring, 情報学研究科
        • From Apr. 2021, To Mar. 2022
          Computational and cognitive neuroscience
          Spring, 情報学研究科
        list
          Last Updated :2022/06/28

          Administration

          Faculty management (title, position)

          • From 01 Apr. 2017, To 31 Mar. 2018
            システム運用WG
          • From 01 Apr. 2017, To 31 Mar. 2018
            情報セキュリティWG
          • From 01 Apr. 2018, To 31 Mar. 2019
            情報セキュリティWG委員
          • From 01 Apr. 2018, To 31 Mar. 2019
            システム運用WG委員

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