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CHEN Xun

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高等研究院 ヒト生物学高等研究拠点 特定助教

CHEN Xun
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    Last Updated :2022/05/14

    基本情報

    所属学協会

    • National Postdoctoral Association
    • The Association of Chinese Geneticists in America
    • American Society of Human Genetics
    • American Association for the Advancement of Science

    学位

    • Doctoral degree(Huazhong Agricultural University)

    経歴

    • 自 2021年06月, 至 現在
      京都大学, Institute for the Advanced Study of Human Biology, Program Specific Assistant Professor
    • 自 2020年02月, 至 2021年05月
      京都大学, Institute for the Advanced Study of Human Biology, Program Specific Researcher
    • 自 2014年10月, 至 2019年05月
      University of Vermont, Microbiology and Molecular Genetics Department, Postdoctoral researcher

    使用言語

    • 英語

    ID,URL

    researchmap URL

    list
      Last Updated :2022/05/14

      研究

      研究キーワード

      • Transposable element
      • Evolution
      • Bioinformatics
      • High-throughput sequencing
      • Virology
      • Cancer
      • Comparative Epigenomics

      研究分野

      • ライフサイエンス, ウイルス学
      • ライフサイエンス, システムゲノム科学
      • ライフサイエンス, ゲノム生物学

      論文

      • Characterization of Hepatitis B Virus Integrations Identified in Hepatocellular Carcinoma Genomes
        Pranav Mathkar; Xun Chen*; Arvis Sulovari; Dawei Li*
        Viruses, 2021年02月04日, 査読有り, 責任著者
      • Sequencing facility and DNA source associated patterns of virus-mappable reads in whole-genome sequencing data
        Xun Chen; Dawei Li
        Genomics, 2020年12月, 査読有り
      • Comprehensive comparative analysis of methods and software for identifying viral integrations
        Xun Chen; Jason Kost; Dawei Li
        Briefings in Bioinformatics, 2019年11月27日, 査読有り
      • ERVcaller: identifying polymorphic endogenous retrovirus and other transposable element insertions using whole-genome sequencing data
        Xun Chen; Dawei Li
        Bioinformatics, 2019年10月15日, 査読有り
      • A CACTA ‐like transposable element in the upstream region of BnaA9 . CYP 78A9 acts as an enhancer to increase silique length and seed weight in rapeseed
        Liuliu Shi; Jurong Song; Chaocheng Guo; Bo Wang; Zhilin Guan; Pu Yang; Xun Chen; Qinghua Zhang; Graham J. King; Jing Wang; Kede Liu
        The Plant Journal, 2019年05月, 査読有り
      • A virome-wide clonal integration analysis platform for discovering cancer viral etiology
        Xun Chen; Jason Kost; Arvis Sulovari; Nathalie Wong; Winnie S. Liang; Jian Cao; Dawei Li
        Genome Research, 2019年05月, 査読有り
      • A comprehensive and precise set of intervarietal substitution lines to identify candidate genes and quantitative trait loci in oilseed rape (Brassica napus L.)
        Shanjing Yang; Bao Zhang; Gang Liu; Baohua Hong; Jinsong Xu; Xun Chen; Bo Wang; Zhikun Wu; Fan Hou; Xiaopeng Yue; Jing Wang; Qinghua Zhang; Graham J. King; Kede Liu
        Theoretical and Applied Genetics, 2018年10月, 査読有り
      • Evaluation of Linkage Disequilibrium Pattern and Association Study on Seed Oil Content in Brassica napus Using ddRAD Sequencing
        Zhikun Wu; Bo Wang; Xun Chen; Jiangsheng Wu; Graham J. King; Yingjie Xiao; Kede Liu
        PLOS ONE, 2016年01月05日, 査読有り
      • Genome-wide DNA methylation profiling by modified reduced representation bisulfite sequencing in Brassica rapa suggests that epigenetic modifications play a key role in polyploid genome evolution
        Xun Chen; Xianhong Ge; Jing Wang; Chen Tan; Graham J. King; Kede Liu
        Frontiers in Plant Science, 2015年10月09日, 査読有り
      • QTL Scanning for Rice Yield Using a Whole Genome SNP Array
        Cong Tan; Zhongmin Han; Huihui Yu; Wei Zhan; Weibo Xie; Xun Chen; Hu Zhao; Fasong Zhou; Yongzhong Xing
        Journal of Genetics and Genomics, 2013年12月, 査読有り
      • Development of a core set of single-locus SSR markers for allotetraploid rapeseed (Brassica napus L.)
        Haitao Li; Muhammad Younas; Xiaofeng Wang; Xuemin Li; Lin Chen; Bo Zhao; Xun Chen; Jinsong Xu; Fan Hou; Baohua Hong; Gang Liu; Hongyang Zhao; Xueli Wu; Hongzhi Du; Jiangsheng Wu; Kede Liu
        Theoretical and Applied Genetics, 2013年04月, 査読有り
      • Detection and genotyping of restriction fragment associated polymorphisms in polyploid crops with a pseudo-reference sequence: a case study in allotetraploid Brassica napus
        Xun Chen; Xuemin Li; Bing Zhang; Jinsong Xu; Zhikun Wu; Bo Wang; Haitao Li; Muhammad Younas; Lei Huang; Yingfeng Luo; Jiangsheng Wu; Songnian Hu; Kede Liu
        BMC Genomics, 2013年, 査読有り
      • Abundance, marker development and genetic mapping of microsatellites from unigenes in Brassica napus
        Fang Wang; Xiaofeng Wang; Xun Chen; Yingjie Xiao; Haitao Li; Shunchang Zhang; Jinsong Xu; Jie Fu; Lei Huang; Chao Liu; Jiangsheng Wu; Kede Liu
        Molecular Breeding, 2012年08月, 査読有り
      • The Arabidopsis RETARDED ROOT GROWTH Gene Encodes a Mitochondria-Localized Protein That Is Required for Cell Division in the Root Meristem
        Xiaojing Zhou; Qiang Li; Xun Chen; Jianping Liu; Qinghua Zhang; Yajie Liu; Kede Liu; Jian Xu
        Plant Physiology, 2011年12月, 査読有り
      • Development and genetic mapping of microsatellite markers from whole genome shotgun sequences in Brassica oleracea
        Haitao Li; Xun Chen; Yuan Yang; Jinsong Xu; Jianxun Gu; Jie Fu; Xiaoju Qian; Shunchang Zhang; Jiangsheng Wu; Kede Liu
        Molecular Breeding, 2011年12月, 査読有り
      • Genetic diversity comparison between spring and weak-winter Brassica napus cultivars using single-locus SSR markers [J]
        Xun Chen; Jiang-sheng Wu; Ke-de Liu
        Chinese Journal of Oil Crop Sciences, 2010年, 査読有り

      講演・口頭発表等

      • Transposable elements reveal inter-individual variability in the human response to influenza infection
        Xun Chen
        The 1st International Symposium of CCII, 2021年01月15日
      • Structural Variants and Viral Etiology
        Xun Chen
        Invited Seminar at Xiamen University, 2019年11月11日
      • Human genomics and age-related diseases
        Xun Chen
        The Third International Youth Scholar "Rixin Forum" of Beijing University of Technology, 2019年06月11日
      • A new platform for studying viral etiology in human cancers
        Xun Chen
        Viral Integration Detection Forum, 2019年06月06日
      • A new platform for studying viral etiology in human cancers
        Xun Chen
        Invited Seminar at Chinese Academy of Medical Sciences & Peking Union Medical College, Suzhou Institute of Systems Medicine, 2019年05月14日
      • A new platform for studying viral etiology in human cancers using whole-genome sequencing technology
        Xun Chen
        The 4th South Lake Innovation Forum for International Young Talents, 2019年05月09日
      • A virome-wide clonal integration analysis platform for uncovering new cancer viral etiologies
        Xun Chen
        2018 UVM Cancer Center Clinical & Translational Research Symposium Cancer Control in A Rural Environment, 2018年04月20日
      • Identifying and characterizing novel virus integrations in hepatocellular carcinoma genomes by virome-wide analysis of whole-genome sequencing data
        UVM Graduate Student and Postdoctoral Trainee Research Showcase, 2017年11月10日
      • Identifying and characterizing novel virus integrations in hepatocellular carcinoma genomes by virome-wide analysis of whole-genome sequencing data
        Xun Chen
        The American Society of Human Genetics (ASHG) 2017, 2017年10月18日
      • Genome-scale DNA methylation profiling in Brassica rapa using modified RRBS method
        Xun Chen
        The 19th Crucifer Genetic Workshop and Brassica 2014, 2014年03月31日
      • Comparison of three methods for SNP discovery using modified ddRADseq sequencing data in allotetraploid Brassica napus
        Xun Chen
        Plant & Animal Genome Asia 2013, 2013年03月20日
      • Detection and genotyping of restriction fragment associated polymorphisms in polyploidy crops with a pseudo reference sequence: A case study in tetraploid Brassica napus
        Xun Chen
        Crop Genetic Improvement & Biology Seed Industry Doctoral Forum 2012, 2012年11月02日
      • Fine mapping and cloning of one gene controlling seed coat color in Brassica napus
        Xun Chen
        Third International Conference on Plant Molecular Breeding, 2010年09月05日

      外部資金:科学研究費補助金

      • Transposable elements shape the evolution of mammalian innate immunity against pathogens
        若手研究
        小区分43050:ゲノム生物学関連
        京都大学
        CHEN Xun
        自 2021年04月01日, 至 2024年03月31日, 交付
        Transposable element;Evolution;Immunology;Comparative epigenomics
      list
        Last Updated :2022/05/14

        学術・社会貢献

        学術貢献活動

        • Crop and Pasture Science
          審査・評価, 査読
        • High-throughput
          審査・評価, 査読
        • Plants
          審査・評価, 査読
        • Genes
          審査・評価, 査読
        • Cells
          審査・評価, 査読
        • Viruses
          審査・評価, 査読
        • Briefings in Bioinformatics
          審査・評価, 査読
        • Nature Communications
          審査・評価, 査読

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