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田中 里枝

タナカ リエ

医学研究科 医学専攻分子生体統御学講座分子細胞情報学 特定助教

田中 里枝
list
    Last Updated :2022/05/14

    基本情報

    所属学協会

    • 日本薬学会
    • The Pharmaceutical Society of Japan

    学位

    • 博士(薬学)(岐阜薬科大学)

    経歴

    • 自 2021年04月
      京都大学, 大学院医学研究科, 特定助教

    ID,URL

    researchmap URL

    list
      Last Updated :2022/05/14

      研究

      研究キーワード

      • 精製
      • 合成
      • 結晶化
      • Purification
      • Synthesis
      • Crystallization

      研究分野

      • ライフサイエンス, 構造生物化学
      • ナノテク・材料, 生物分子化学

      論文

      • Microcrystal preparation for serial femtosecond X-ray crystallography of bacterial copper amine oxidase
        Takeshi Murakawa; Mamoru Suzuki; Toshi Arima; Michihiro Sugahara; Tomoyuki Tanaka; Rie Tanaka; So Iwata; Eriko Nango; Kensuke Tono; Hideyuki Hayashi; Kenji Fukui; Takato Yano; Katsuyuki Tanizawa; Toshihide Okajima
        Acta Crystallographica Section F Structural Biology Communications, 2021年10月01日
      • Capturing structural changes of the S1 to S2 transition of photosystem II using time-resolved serial femtosecond crystallography.
        Hongjie Li; Yoshiki Nakajima; Takashi Nomura; Michihiro Sugahara; Shinichiro Yonekura; Siu Kit Chan; Takanori Nakane; Takahiro Yamane; Yasufumi Umena; Mamoru Suzuki; Tetsuya Masuda; Taiki Motomura; Hisashi Naitow; Yoshinori Matsuura; Tetsunari Kimura; Kensuke Tono; Shigeki Owada; Yasumasa Joti; Rie Tanaka; Eriko Nango; Fusamichi Akita; Minoru Kubo; So Iwata; Jian-Ren Shen; Michihiro Suga
        IUCrJ, 2021年05月01日
      • Time-resolved serial femtosecond crystallography reveals early structural changes in channelrhodopsin.
        Kazumasa Oda; Takashi Nomura; Takanori Nakane; Keitaro Yamashita; Keiichi Inoue; Shota Ito; Johannes Vierock; Kunio Hirata; Andrés D Maturana; Kota Katayama; Tatsuya Ikuta; Itsuki Ishigami; Tamaki Izume; Rie Umeda; Ryuun Eguma; Satomi Oishi; Go Kasuya; Takafumi Kato; Tsukasa Kusakizako; Wataru Shihoya; Hiroto Shimada; Tomoyuki Takatsuji; Mizuki Takemoto; Reiya Taniguchi; Atsuhiro Tomita; Ryoki Nakamura; Masahiro Fukuda; Hirotake Miyauchi; Yongchan Lee; Eriko Nango; Rie Tanaka; Tomoyuki Tanaka; Michihiro Sugahara; Tetsunari Kimura; Tatsuro Shimamura; Takaaki Fujiwara; Yasuaki Yamanaka; Shigeki Owada; Yasumasa Joti; Kensuke Tono; Ryuichiro Ishitani; Shigehiko Hayashi; Hideki Kandori; Peter Hegemann; So Iwata; Minoru Kubo; Tomohiro Nishizawa; Osamu Nureki
        eLife, 2021年03月23日
      • High-resolution crystal structures of transient intermediates in the phytochrome photocycle.
        Melissa Carrillo; Suraj Pandey; Juan Sanchez; Moraima Noda; Ishwor Poudyal; Luis Aldama; Tek Narsingh Malla; Elin Claesson; Weixiao Yuan Wahlgren; Denisse Feliz; Vukica Šrajer; Michał Maj; Leticia Castillon; So Iwata; Eriko Nango; Rie Tanaka; Tomoyuki Tanaka; Luo Fangjia; Kensuke Tono; Shigeki Owada; Sebastian Westenhoff; Emina A Stojković; Marius Schmidt
        Structure (London, England : 1993), 2021年03月20日
      • Isoprenoid-chained lipid EROCOC17+4: a new matrix for membrane protein crystallization and a crystal delivery medium in serial femtosecond crystallography.
        Kentaro Ihara; Masakatsu Hato; Takanori Nakane; Keitaro Yamashita; Tomomi Kimura-Someya; Toshiaki Hosaka; Yoshiko Ishizuka-Katsura; Rie Tanaka; Tomoyuki Tanaka; Michihiro Sugahara; Kunio Hirata; Masaki Yamamoto; Osamu Nureki; Kensuke Tono; Eriko Nango; So Iwata; Mikako Shirouzu
        Scientific reports, 2020年11月09日
      • The primary structural photoresponse of phytochrome proteins captured by a femtosecond X-ray laser.
        Elin Claesson; Weixiao Yuan Wahlgren; Heikki Takala; Suraj Pandey; Leticia Castillon; Valentyna Kuznetsova; Léocadie Henry; Matthijs Panman; Melissa Carrillo; Joachim Kübel; Rahul Nanekar; Linnéa Isaksson; Amke Nimmrich; Andrea Cellini; Dmitry Morozov; Michał Maj; Moona Kurttila; Robert Bosman; Eriko Nango; Rie Tanaka; Tomoyuki Tanaka; Luo Fangjia; So Iwata; Shigeki Owada; Keith Moffat; Gerrit Groenhof; Emina A Stojković; Janne A Ihalainen; Marius Schmidt; Sebastian Westenhoff
        eLife, 2020年03月31日
      • Comparing serial X-ray crystallography and microcrystal electron diffraction (MicroED) as methods for routine structure determination from small macromolecular crystals.
        Alexander M Wolff; Iris D Young; Raymond G Sierra; Aaron S Brewster; Michael W Martynowycz; Eriko Nango; Michihiro Sugahara; Takanori Nakane; Kazutaka Ito; Andrew Aquila; Asmit Bhowmick; Justin T Biel; Sergio Carbajo; Aina E Cohen; Saul Cortez; Ana Gonzalez; Tomoya Hino; Dohyun Im; Jake D Koralek; Minoru Kubo; Tomas S Lazarou; Takashi Nomura; Shigeki Owada; Avi J Samelson; Tomoyuki Tanaka; Rie Tanaka; Erin M Thompson; Henry van den Bedem; Rahel A Woldeyes; Fumiaki Yumoto; Wei Zhao; Kensuke Tono; Sebastien Boutet; So Iwata; Tamir Gonen; Nicholas K Sauter; James S Fraser; Michael C Thompson
        IUCrJ, 2020年03月01日
      • High-viscosity sample-injection device for serial femtosecond crystallography at atmospheric pressure.
        Yoshiaki Shimazu; Kensuke Tono; Tomoyuki Tanaka; Yasuaki Yamanaka; Takanori Nakane; Chihiro Mori; Kanako Terakado Kimura; Takaaki Fujiwara; Michihiro Sugahara; Rie Tanaka; R Bruce Doak; Tatsuro Shimamura; So Iwata; Eriko Nango; Makina Yabashi
        Journal of applied crystallography, 2019年12月01日
      • Toward G protein-coupled receptor structure-based drug design using X-ray lasers.
        Andrii Ishchenko; Benjamin Stauch; Gye Won Han; Alexander Batyuk; Anna Shiriaeva; Chufeng Li; Nadia Zatsepin; Uwe Weierstall; Wei Liu; Eriko Nango; Takanori Nakane; Rie Tanaka; Kensuke Tono; Yasumasa Joti; So Iwata; Isabel Moraes; Cornelius Gati; Vadim Cherezov
        IUCrJ, 2019年11月01日
      • High-resolution crystal structures of a myxobacterial phytochrome at cryo and room temperatures.
        Juan C Sanchez; Melissa Carrillo; Suraj Pandey; Moraima Noda; Luis Aldama; Denisse Feliz; Elin Claesson; Weixiao Yuan Wahlgren; Gregory Tracy; Phu Duong; Angela C Nugent; Andrew Field; Vukica Šrajer; Christopher Kupitz; So Iwata; Eriko Nango; Rie Tanaka; Tomoyuki Tanaka; Luo Fangjia; Kensuke Tono; Shigeki Owada; Sebastian Westenhoff; Marius Schmidt; Emina A Stojković
        Structural dynamics (Melville, N.Y.), 2019年09月
      • Structural basis for light control of cell development revealed by crystal structures of a myxobacterial phytochrome.
        Nicole C Woitowich; Andrei S Halavaty; Patricia Waltz; Christopher Kupitz; Joseph Valera; Gregory Tracy; Kevin D Gallagher; Elin Claesson; Takanori Nakane; Suraj Pandey; Garrett Nelson; Rie Tanaka; Eriko Nango; Eiichi Mizohata; Shigeki Owada; Kensure Tono; Yasumasa Joti; Angela C Nugent; Hardik Patel; Ayesha Mapara; James Hopkins; Phu Duong; Dorina Bizhga; Svetlana E Kovaleva; Rachael St Peter; Cynthia N Hernandez; Wesley B Ozarowski; Shatabdi Roy-Chowdhuri; Jay-How Yang; Petra Edlund; Heikki Takala; Janne Ihalainen; Jennifer Brayshaw; Tyler Norwood; Ishwor Poudyal; Petra Fromme; John C H Spence; Keith Moffat; Sebastian Westenhoff; Marius Schmidt; Emina A Stojković
        IUCrJ, 2018年09月01日
      • XFEL structures of the influenza M2 proton channel: Room temperature water networks and insights into proton conduction.
        Jessica L Thomaston; Rahel A Woldeyes; Takanori Nakane; Ayumi Yamashita; Tomoyuki Tanaka; Kotaro Koiwai; Aaron S Brewster; Benjamin A Barad; Yujie Chen; Thomas Lemmin; Monarin Uervirojnangkoorn; Toshi Arima; Jun Kobayashi; Tetsuya Masuda; Mamoru Suzuki; Michihiro Sugahara; Nicholas K Sauter; Rie Tanaka; Osamu Nureki; Kensuke Tono; Yasumasa Joti; Eriko Nango; So Iwata; Fumiaki Yumoto; James S Fraser; William F DeGrado
        Proceedings of the National Academy of Sciences of the United States of America, 2017年12月19日
      • Two-colour serial femtosecond crystallography dataset from gadoteridol-derivatized lysozyme for MAD phasing.
        Alexander Gorel; Koji Motomura; Hironobu Fukuzawa; R Bruce Doak; Marie Luise Grünbein; Mario Hilpert; Ichiro Inoue; Marco Kloos; Gabriela Nass Kovács; Eriko Nango; Karol Nass; Christopher M Roome; Robert L Shoeman; Rie Tanaka; Kensuke Tono; Lutz Foucar; Yasumasa Joti; Makina Yabashi; So Iwata; Kiyoshi Ueda; Thomas R M Barends; Ilme Schlichting
        Scientific data, 2017年12月12日
      • Capturing an initial intermediate during the P450nor enzymatic reaction using time-resolved XFEL crystallography and caged-substrate.
        Takehiko Tosha; Takashi Nomura; Takuma Nishida; Naoya Saeki; Kouta Okubayashi; Raika Yamagiwa; Michihiro Sugahara; Takanori Nakane; Keitaro Yamashita; Kunio Hirata; Go Ueno; Tetsunari Kimura; Tamao Hisano; Kazumasa Muramoto; Hitomi Sawai; Hanae Takeda; Eiichi Mizohata; Ayumi Yamashita; Yusuke Kanematsu; Yu Takano; Eriko Nango; Rie Tanaka; Osamu Nureki; Osami Shoji; Yuka Ikemoto; Hironori Murakami; Shigeki Owada; Kensuke Tono; Makina Yabashi; Masaki Yamamoto; Hideo Ago; So Iwata; Hiroshi Sugimoto; Yoshitsugu Shiro; Minoru Kubo
        Nature communications, 2017年11月17日
      • Multi-wavelength anomalous diffraction de novo phasing using a two-colour X-ray free-electron laser with wide tunability.
        Alexander Gorel; Koji Motomura; Hironobu Fukuzawa; R Bruce Doak; Marie Luise Grünbein; Mario Hilpert; Ichiro Inoue; Marco Kloos; Gabriela Kovácsová; Eriko Nango; Karol Nass; Christopher M Roome; Robert L Shoeman; Rie Tanaka; Kensuke Tono; Yasumasa Joti; Makina Yabashi; So Iwata; Lutz Foucar; Kiyoshi Ueda; Thomas R M Barends; Ilme Schlichting
        Nature communications, 2017年10月27日
      • X-ray Free Electron Laser Determination of Crystal Structures of Dark and Light States of a Reversibly Photoswitching Fluorescent Protein at Room Temperature.
        Christopher D M Hutchison; Violeta Cordon-Preciado; Rhodri M L Morgan; Takanori Nakane; Josie Ferreira; Gabriel Dorlhiac; Alvaro Sanchez-Gonzalez; Allan S Johnson; Ann Fitzpatrick; Clyde Fare; Jon P Marangos; Chun Hong Yoon; Mark S Hunter; Daniel P DePonte; Sébastien Boutet; Shigeki Owada; Rie Tanaka; Kensuke Tono; So Iwata; Jasper J van Thor
        International journal of molecular sciences, 2017年09月07日
      • Nanosecond pump-probe device for time-resolved serial femtosecond crystallography developed at SACLA.
        Minoru Kubo; Eriko Nango; Kensuke Tono; Tetsunari Kimura; Shigeki Owada; Changyong Song; Fumitaka Mafuné; Ken Miyajima; Yoshihiro Takeda; Jun Ya Kohno; Naoya Miyauchi; Takanori Nakane; Tomoyuki Tanaka; Takashi Nomura; Jan Davidsson; Rie Tanaka; Michio Murata; Takashi Kameshima; Takaki Hatsui; Yasumasa Joti; Richard Neutze; Makina Yabashi; So Iwata
        Journal of synchrotron radiation, 2017年09月01日
      • Protein-ligand complex structure from serial femtosecond crystallography using soaked thermolysin microcrystals and comparison with structures from synchrotron radiation.
        Hisashi Naitow; Yoshinori Matsuura; Kensuke Tono; Yasumasa Joti; Takashi Kameshima; Takaki Hatsui; Makina Yabashi; Rie Tanaka; Tomoyuki Tanaka; Michihiro Sugahara; Jun Kobayashi; Eriko Nango; So Iwata; Naoki Kunishima
        Acta crystallographica. Section D, Structural biology, 2017年08月01日
      • Serial femtosecond crystallography structure of cytochrome c oxidase at room temperature.
        Rebecka Andersson; Cecilia Safari; Robert Dods; Eriko Nango; Rie Tanaka; Ayumi Yamashita; Takanori Nakane; Kensuke Tono; Yasumasa Joti; Petra Båth; Elin Dunevall; Robert Bosman; Osamu Nureki; So Iwata; Richard Neutze; Gisela Brändén
        Scientific reports, 2017年07月03日
      • Hydroxyethyl cellulose matrix applied to serial crystallography.
        Michihiro Sugahara; Takanori Nakane; Tetsuya Masuda; Mamoru Suzuki; Shigeyuki Inoue; Changyong Song; Rie Tanaka; Toru Nakatsu; Eiichi Mizohata; Fumiaki Yumoto; Kensuke Tono; Yasumasa Joti; Takashi Kameshima; Takaki Hatsui; Makina Yabashi; Osamu Nureki; Keiji Numata; Eriko Nango; So Iwata
        Scientific reports, 2017年04月06日
      • Light-induced structural changes and the site of O=O bond formation in PSII caught by XFEL.
        Michihiro Suga; Fusamichi Akita; Michihiro Sugahara; Minoru Kubo; Yoshiki Nakajima; Takanori Nakane; Keitaro Yamashita; Yasufumi Umena; Makoto Nakabayashi; Takahiro Yamane; Takamitsu Nakano; Mamoru Suzuki; Tetsuya Masuda; Shigeyuki Inoue; Tetsunari Kimura; Takashi Nomura; Shinichiro Yonekura; Long-Jiang Yu; Tomohiro Sakamoto; Taiki Motomura; Jing-Hua Chen; Yuki Kato; Takumi Noguchi; Kensuke Tono; Yasumasa Joti; Takashi Kameshima; Takaki Hatsui; Eriko Nango; Rie Tanaka; Hisashi Naitow; Yoshinori Matsuura; Ayumi Yamashita; Masaki Yamamoto; Osamu Nureki; Makina Yabashi; Tetsuya Ishikawa; So Iwata; Jian-Ren Shen
        Nature, 2017年03月02日
      • A three-dimensional movie of structural changes in bacteriorhodopsin.
        Eriko Nango; Antoine Royant; Minoru Kubo; Takanori Nakane; Cecilia Wickstrand; Tetsunari Kimura; Tomoyuki Tanaka; Kensuke Tono; Changyong Song; Rie Tanaka; Toshi Arima; Ayumi Yamashita; Jun Kobayashi; Toshiaki Hosaka; Eiichi Mizohata; Przemyslaw Nogly; Michihiro Sugahara; Daewoong Nam; Takashi Nomura; Tatsuro Shimamura; Dohyun Im; Takaaki Fujiwara; Yasuaki Yamanaka; Byeonghyun Jeon; Tomohiro Nishizawa; Kazumasa Oda; Masahiro Fukuda; Rebecka Andersson; Petra Båth; Robert Dods; Jan Davidsson; Shigeru Matsuoka; Satoshi Kawatake; Michio Murata; Osamu Nureki; Shigeki Owada; Takashi Kameshima; Takaki Hatsui; Yasumasa Joti; Gebhard Schertler; Makina Yabashi; Ana-Nicoleta Bondar; Jörg Standfuss; Richard Neutze; So Iwata
        Science (New York, N.Y.), 2016年12月23日
      • Oil-free hyaluronic acid matrix for serial femtosecond crystallography.
        Michihiro Sugahara; Changyong Song; Mamoru Suzuki; Tetsuya Masuda; Shigeyuki Inoue; Takanori Nakane; Fumiaki Yumoto; Eriko Nango; Rie Tanaka; Kensuke Tono; Yasumasa Joti; Takashi Kameshima; Takaki Hatsui; Makina Yabashi; Osamu Nureki; Keiji Numata; So Iwata
        Scientific reports, 2016年04月18日
      • Native sulfur/chlorine SAD phasing for serial femtosecond crystallography.
        Takanori Nakane; Changyong Song; Mamoru Suzuki; Eriko Nango; Jun Kobayashi; Tetsuya Masuda; Shigeyuki Inoue; Eiichi Mizohata; Toru Nakatsu; Tomoyuki Tanaka; Rie Tanaka; Tatsuro Shimamura; Kensuke Tono; Yasumasa Joti; Takashi Kameshima; Takaki Hatsui; Makina Yabashi; Osamu Nureki; So Iwata; Michihiro Sugahara
        Acta crystallographica. Section D, Biological crystallography, 2015年12月01日
      • Diverse application platform for hard X-ray diffraction in SACLA (DAPHNIS): application to serial protein crystallography using an X-ray free-electron laser.
        Kensuke Tono; Eriko Nango; Michihiro Sugahara; Changyong Song; Jaehyun Park; Tomoyuki Tanaka; Rie Tanaka; Yasumasa Joti; Takashi Kameshima; Shun Ono; Takaki Hatsui; Eiichi Mizohata; Mamoru Suzuki; Tatsuro Shimamura; Yoshiki Tanaka; So Iwata; Makina Yabashi
        Journal of synchrotron radiation, 2015年05月
      • Grease matrix as a versatile carrier of proteins for serial crystallography.
        Michihiro Sugahara; Eiichi Mizohata; Eriko Nango; Mamoru Suzuki; Tomoyuki Tanaka; Tetsuya Masuda; Rie Tanaka; Tatsuro Shimamura; Yoshiki Tanaka; Chiyo Suno; Kentaro Ihara; Dongqing Pan; Keisuke Kakinouchi; Shigeru Sugiyama; Michio Murata; Tsuyoshi Inoue; Kensuke Tono; Changyong Song; Jaehyun Park; Takashi Kameshima; Takaki Hatsui; Yasumasa Joti; Makina Yabashi; So Iwata
        Nature methods, 2015年01月

      MISC

      • 5, 6-cis-Penems: Broad Spectrum Anti-Methicillin-Resistant Staphylococcus aureus β-Lactam Antibiotics
        Masaji Ishiguro; Rie Tanaka; Koushi Namikawa; Takaaki Nasu; Hidekazu Inoue; Takashi Nakatsuka; Yoshiaki Oyama; Seiichi Imajo
        J. Med. Chem. (1997), 40(14), 2126-2132, 1997年07月04日
      • Structure-activity relationships of penem antibiotics: crystallographic structures and implications for their antimicrobial activities
        Rie Tanaka; Yoshiaki Oyama; Seiichi Imajo; Shinsuke Matsuki; Masaji Ishiguro
        Bioorganic and Medicinal Chemistry, 1997年07月
      • Structure-activity relationships of penem antibiotics: crystallographic structures and implications for their antimicrobial activities
        Rie Tanaka; Yoshiaki Oyama; Seiichi Imajo; Shinsuke Matsuki; Masaji Ishiguro
        Bioorganic and Medicinal Chemistry, 1997年07月
      • Prog. Heterocycl. Chem. (1996), 8, 163-177
        Rie Tanaka
        Elsevier, 1996年

      Works(作品等)

      • 宇宙開発事業団、先導的応用化プロジェクト
        自 1999年

      受賞

      • 2001年03月27日
        The Pharmaceutical Society of Japan, 日本薬学会創薬科学賞

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