Basic Information

Email Address

• Email Address

  nakura.yoshiko.3skyoto-u.ac.jp

Academic Degree

• 20 Mar. 2002

  東京理科大学修士（工学）
• (Tokyo University of Science)

Academic Resume (Graduate Schools)

• 東京理科大学, 大学院理工学研究科修士課程工業化学専攻, 修了
• Tokyo University of Science, Graduate School of Science and Technology, Department of Pure and Applied Chemistry, 修了

Academic Resume (Undergraduate School/Majors)

• 東京理科大学, 理工学部工業化学科, 卒業
• Tokyo University of Science, Faculty of Science and Technology, Department of Pure and Applied Chemistry, 卒業

High School

• High School

  富山県立 富山高等学校

ID,URL

• J-Global ID

  201801019794613134

researchmap URL

• https://researchmap.jp/ynakura

Research

Research Areas

• Life sciences, Structural biochemistry

Papers

• The structure of MgtE in the absence of magnesium provides new insights into channel gating

  Fei Jin; Minxuan Sun; Takashi Fujii; Yurika Yamada; Jin Wang; Andrés D. Maturana; Miki Wada; Shichen Su; Jinbiao Ma; Hironori Takeda; Tsukasa Kusakizako; Atsuhiro Tomita; Yoshiko Nakada-Nakura; Kehong Liu; Tomoko Uemura; Yayoi Nomura; Norimichi Nomura; Koichi Ito; Osamu Nureki; Keiichi Namba; So Iwata; Ye Yu; Motoyuki Hattori

  PLOS Biology, 27 Apr. 2021

  
• AT2 receptor interacting protein 1 (ATIP1) mediates COX-2 induction by an AT2 receptor agonist in endothelial cells

  Keita Soda; Yoshiko Nakada; Hiroko Iwanari; Takao Hamakubo

  Biochemistry and Biophysics Reports, Dec. 2020, Peer-reviewed

  
• Structural insights into tetraspanin CD9 function

  Rie Umeda; Yuhkoh Satouh; Mizuki Takemoto; Yoshiko Nakada-Nakura; Kehong Liu; Takeshi Yokoyama; Mikako Shirouzu; So Iwata; Norimichi Nomura; Ken Sato; Masahito Ikawa; Tomohiro Nishizawa; Osamu Nureki

  Nature Communications, Mar. 2020, Peer-reviewed

  
• Toward Structural Understanding of Ligand Recognition by Lysophosphatidic Acid Receptor Lpa6

  Taniguchi Reiya; Inoue Asuka; Sayama Misa; Yamashita Keitaro; Hirata Kunio; Yoshida Masahito; Nakada-Nakura Yoshiko; Otani Yuko; Kato Hideaki; Nishizawa Tomohiro; Doi Takayuki; Ohwada Tomohiko; Ishitani Ryuichiro; Aoki Junken; Nureki Osamu

  PROTEIN SCIENCE, Nov. 2018, Peer-reviewed

  
• Outward open conformation of a Major Facilitator Superfamily multidrug/H⁺ antiporter provides insights into switching mechanism.

  Nagarathinam K; Nakada-Nakura Y; Parthier C; Terada T; Juge N; Jaenecke F; Liu K; Hotta Y; Miyaji T; Omote H; Iwata S; Nomura N; Stubbs MT; Tanabe M

  Nature communications, Oct. 2018, Peer-reviewed

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• Generation of Conformation-Specific Antibody Fragments for Crystallization of the Multidrug Resistance Transporter MdfA

  Frank Jaenecke; Yoshiko Nakada-Nakura; Kumar Nagarathinam; Satoshi Ogasawara; Kehong Liu; Yunhon Hotta; So Iwata; Norimichi Nomura; Mikio Tanabe

  Methods in Molecular Biology, 2018, Peer-reviewed

  
• Structural insights into ligand recognition by the lysophosphatidic acid receptor LPA(6)

  Reiya Taniguchi; Asuka Inoue; Misa Sayama; Akiharu Uwamizu; Keitaro Yamashita; Kunio Hirata; Masahito Yoshida; Yoshiki Tanaka; Hideaki E. Kato; Yoshiko Nakada-Nakura; Yuko Otani; Tomohiro Nishizawa; Takayuki Doi; Tomohiko Ohwada; Ryuichiro Ishitani; Junken Aoki; Osamu Nureki

  NATURE, Aug. 2017, Peer-reviewed

  
• The multidrug-resistance transporter MdfA from Escherichia coli: crystallization and X-ray diffraction analysis

  Kumar Nagarathinam; Frank Jaenecke; Yoshiko Nakada-Nakura; Yunhon Hotta; Kehong Liu; So Iwata; Milton T. Stubbs; Norimichi Nomura; Mikio Tanabe

  ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, Jul. 2017, Peer-reviewed

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• Crystal structures of the TRIC trimeric intracellular cation channel orthologues

  Go Kasuya; Masahiro Hiraizumi; Andres D. Maturana; Kaoru Kumazaki; Yuichiro Fujiwara; Keihong Liu; Yoshiko Nakada-Nakura; So Iwata; Keisuke Tsukada; Tomotaka Komori; Sotaro Uemura; Yuhei Goto; Takanori Nakane; Mizuki Takemoto; Hideaki E. Kato; Keitaro Yamashita; Miki Wada; Koichi Ito; Ryuichiro Ishitani; Motoyuki Hattori; Osamu Nureki

  CELL RESEARCH, Dec. 2016, Peer-reviewed

  
• Structure and Mechanism of the Mammalian Fructose Transporter GLUT5

  Verdon Gregory; Nomura Norimichi; Kang Hae Joo; Shimamura Tatsuro; Nomura Yayoi; Hussien Saba Abdul; Qureshi Aziz Abdul; Coincon Mathieu; Sato Yumi; Nakada-Nakura Yoshiko; Murata Takeshi; Kobayashi Takuya; Kasahara Michihiro; Iwata So; Drew David

  Biophysical Journal, 16 Feb. 2016, Peer-reviewed

  
• Structural Insights into Divalent Cation Modulations of ATP-Gated P2X Receptor Channels

  Go Kasuya; Yuichiro Fujiwara; Mizuki Takemoto; Naoshi Dohmae; Yoshiko Nakada-Nakura; Ryuichiro Ishitani; Motoyuki Hattori; Osamu Nureki

  CELL REPORTS, Feb. 2016, Peer-reviewed

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• Structure and mechanism of the mammalian fructose transporter GLUT5

  Norimichi Nomura; Gregory Verdon; Hae Joo Kang; Tatsuro Shimamura; Yayoi Nomura; Yo Sonoda; Saba Abdul Hussien; Aziz Abdul Qureshi; Mathieu Coincon; Yumi Sato; Hitomi Abe; Yoshiko Nakada-Nakura; Tomoya Hino; Takatoshi Arakawa; Osamu Kusano-Arai; Hiroko Iwanari; Takeshi Murata; Takuya Kobayashi; Takao Hamakubo; Michihiro Kasahara; So Iwata; David Drew

  NATURE, Oct. 2015, Peer-reviewed

  
• Proteoliposome-based Selection of a Recombinant Antibody Fragment Against the Human M2 Muscarinic Acetylcholine Receptor

  Suharni; Yayoi Nomura; Takatoshi Arakawa; Tomoya Hino; Hitomi Abe; Yoshiko Nakada-Nakura; Yumi Sato; Hiroko Iwanari; Mitsunori Shiroishi; Hidetsugu Asada; Tatsuro Shimamura; Takeshi Murata; Takuya Kobayashi; Takao Hamakubo; So Iwata; Norimichi Nomura

  Monoclonal Antibodies in Immunodiagnosis and Immunotherapy, Dec. 2014, Peer-reviewed

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• Crystallization and preliminary X-ray diffraction analysis of YidC, a membrane-protein chaperone and insertase from Bacillus halodurans

  Kaoru Kumazaki; Tomoya Tsukazaki; Tomohiro Nishizawa; Yoshiki Tanaka; Hideaki E. Kato; Yoshiko Nakada-Nakura; Kunio Hirata; Yoshihiro Mori; Hiroaki Suga; Naoshi Dohmae; Ryuichiro Ishitani; Osamu Nureki

  ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, Aug. 2014, Peer-reviewed

  
• Structural basis of Sec-independent membrane protein insertion by YidC

  Kaoru Kumazaki; Shinobu Chiba; Mizuki Takemoto; Arata Furukawa; Ken-ichi Nishiyama; Yasunori Sugano; Takaharu Mori; Naoshi Dohmae; Kunio Hirata; Yoshiko Nakada-Nakura; Andres D. Maturana; Yoshiki Tanaka; Hiroyuki Mori; Yuji Sugita; Fumio Arisaka; Koreaki Ito; Ryuichiro Ishitani; Tomoya Tsukazaki; Osamu Nureki

  NATURE, May 2014, Peer-reviewed

  
• Crystallization and preliminary X-ray diffraction analysis of YidC, a membrane-protein chaperone and insertase from Bacillus halodurans

  Kaoru Kumazaki; Tomoya Tsukazaki; Tomohiro Nishizawa; Yoshiki Tanaka; Hideaki E. Kato; Yoshiko Nakada-Nakura; Kunio Hirata; Yoshihiro Mori; Hiroaki Suga; Naoshi Dohmae; Ryuichiro Ishitani; Osamu Nureki

  Acta Crystallographica Section F:Structural Biology Communications, 2014, Peer-reviewed

  
• G-protein-coupled receptor inactivation by an allosteric inverse-agonist antibody

  Tomoya Hino; Takatoshi Arakawa; Hiroko Iwanari; Takami Yurugi-Kobayashi; Chiyo Ikeda-Suno; Yoshiko Nakada-Nakura; Osamu Kusano-Arai; Simone Weyand; Tatsuro Shimamura; Norimichi Nomura; Alexander D. Cameron; Takuya Kobayashi; Takao Hamakubo; So Iwata; Takeshi Murata

  NATURE, Feb. 2012, Peer-reviewed

  
• A method of generating antibodies against exogenously administered self-antigen by manipulating CD4(+)CD25(+) regulatory T cells

  Hiroko Iwanari; Yoshiko Nakada-Nakura; Osamu Kusano-Arai; Nobuchika Suzuki; Tatsuhiko Kodama; Toshiko Sakihama; Takao Hamakubo

  JOURNAL OF IMMUNOLOGICAL METHODS, Jun. 2011, Peer-reviewed

  
• Fully automated two-dimensional electrophoresis system for high-throughput protein analysis

  Atsunori Hiratsuka; Hideki Kinoshita; Yuji Maruo; Katsuyoshi Takahashi; Satonari Akutsu; Chie Hayashida; Koji Sakairi; Keisuke Usui; Kisho Shiseki; Hajime Inamochi; Yoshiko Nakada; Kouhei Yodoya; Ichiji Namatame; Yutaka Unuma; Makoto Nakamura; Kosuke Ueyama; Yoshinori Ishii; Kazuyoshi Yano; Kenji Yokoyama

  ANALYTICAL CHEMISTRY, Aug. 2007, Peer-reviewed

  
• Distribution of the extrinsic proteins as a potential marker for the evolution of photosynthetic oxygen-evolving photosystem II

  Enami, I; T Suzuki; O Tada; Y Nakada; K Nakamura; A Tohri; H Ohta; Inoue, I; Shen, JR

  FEBS JOURNAL, Oct. 2005, Peer-reviewed

  
• Distribution of extrinsic proteins among various organisms as an index of evolution of oxygen-evolving PSII

  Yoshiko Nakada; Akemi Satoh; Kumi Nakamura; Akinori Okumura; Hisataka Ohta; Jian-Ren Shen; Isao Enami

  PS2001 Proceedings: 12th International Congress on Photosynthesis, 2002, Peer-reviewed

  

Misc.

• 機能性抗体によるGPCR不活性化の分子メカニズム

  村田武士; 村田武士; 村田武士; 日野智也; 日野智也; 荒川孝俊; 荒川孝俊; 岩成宏子; 小林貴美; 小林貴美; 寿野千代; 寿野千代; 名倉淑子; 名倉淑子; 新井修; 島村達郎; 島村達郎; 野村紀通; 野村紀通; 小林拓也; 小林拓也; 浜窪隆雄; 岩田想; 岩田想; 岩田想

  生化学, 2011

  
• 膜蛋白質のX線結晶構造解析を支援する抗体工学技術の確立

  野村紀通; 日野智也; 野村弥生; 安部仁美; 名倉淑子; 荒川孝俊; 岩成宏子; 新井修; 村田武士; 小林拓也; 浜窪隆雄; 島村達郎; DREW David; 岩田想

  生化学, 2011

  
• Evolution of oxygen-evolving PSII in view of extrinsic proteins among various organisms. II

  Y Nakada; H Ohta; Shen, JR; Enami, I

  PLANT AND CELL PHYSIOLOGY, 2002

  

External funds: Kakenhi

• Chemical cage crystallization encapsulating membrane proteins

  Grant-in-Aid for Scientific Research (C)

  Basic Section 43020:Structural biochemistry-related

  Kyoto University

  Yoshiko Nakura

  From 01 Apr. 2020, To 31 Mar. 2023, Project Closed

  膜タンパク質;化学ケージ;分子自己集合;構造解析;固定化タグ;X線結晶構造解析

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-20K06505/