Basic Information

Email Address

• Email Address

  yamaguchi.nobutoshi.2zkyoto-u.ac.jp

Professional Memberships

• THE JAPANESE SOCIETY OF PLANT PHYSIOLOGISTS
• 日本分子生物学会

Academic Degree

• 23 Mar. 2006

  東京大学修士（理学）
• 23 Mar. 2009

  東京大学博士（理学）

Academic Resume (Undergraduate School/Majors)

• 名古屋大学, 情報文化学部自然情報学科, 卒業

ID,URL

• ORCID ID

  0000-0003-3738-6157

• J-Global ID

  201601016184880188

• Researcher number

  90767899

researchmap URL

• https://researchmap.jp/NY790309

Research

Research Interests

• Plant Science
• Environmental responses
• Flower development
• Epigenetics
• Genetics

Research Areas

• Life sciences, Molecular biology, 植物生理

Papers

• A CRC–MYB chromatin loop controls auxin-mediated nectary growth in Arabidopsis

  Hideaki Iimura; Makoto Takahashi; Ryosuke Ohta; Asumi Nagamori; Seika Togawa; Yuki Furuta; Koki Nakamura; Febri Yuda Kurniawan; Xuejing Wang; Kie Kumaishi; Samantha Klasfeld; Taiji Kawakatsu; Yasunori Ichihashi; Takamasa Suzuki; Doris Wagner; Toshiro Ito; Nobutoshi Yamaguchi

  Nature Communications, 17 Oct. 2026, Last author, Corresponding author

  
• Beyond organ identity: AGAMOUS coordinates flower development in space and time

  Koki Nakamura; Nobutoshi Yamaguchi; Toshiro Ito

  Plant and Cell Physiology, 19 Jun. 2026, Corresponding author

  
• The histone crosstalk code in plants: Deciphering epigenetic complexity.

  Koki Nakamura; Nobutoshi Yamaguchi; Toshiro Ito

  Current opinion in plant biology, Oct. 2025, Corresponding author

  
• A CRC–MYB-mediated local chromatin loop at the MAB4 locus determines auxin-mediated nectary size in Arabidopsis thaliana

  Nobutoshi Yamaguchi; Hideaki Iimura; Makoto Takahashi; Ryosuke Ohta; Asumi Nagamori; Seika Togawa; Xuejing Wang; Yuki Furuta; Koki Nakamura; Kie Kumaishi; Samantha Klasfeld; Takamasa Suzuki; Yasunori Ichihashi; Doris Wagner; Toshiro Ito

  07 Sep. 2025

  
• Seasonal changes in daily temperature fluctuation control flowering through a time-dependent regulation of FLOWERING LOCUS T in Arabidopsis

  Akane Kubota; Yoshinori Kondo; Hiroshi Takagi; Tomoaki Muranaka; Nobutoshi Yamaguchi; Shigeo Sugano; Atsushi Nagano; Motomu Endo; Takato Imaizumi

  31 Jul. 2025

  
• Staining Methods for Visualization of Cellular Damage During Petal Abscission

  Yuki Furuta; Nobutoshi Yamaguchi; Toshiro Ito

  Methods in Molecular Biology, 15 May 2025

  
• Small molecules and heat treatments reverse vernalization via epigenetic modification in Arabidopsis

  Nana Otsuka; Ryoya Yamaguchi; Hikaru Sawa; Naoya Kadofusa; Nanako Kato; Yasuyuki Nomura; Nobutoshi Yamaguchi; Atsushi J. Nagano; Ayato Sato; Makoto Shirakawa; Toshiro Ito

  Communications Biology, 22 Jan. 2025

  
• Arabidopsis SDG proteins mediate Polycomb removal and transcription-coupled H3K36 methylation for gene activation

  Nobutoshi Yamaguchi; Wang Yicong; Masato Abe; Yuka Kadoya; Takeru Saiki; Kanae Imai; Xuejing Wang; Taiko To; Soichi Inagaki; Takamasa Suzuki; Tetsuji Kakutani; Toshiro Ito

  10 Sep. 2024

  
• Cause or effect: Probing the roles of epigenetics in plant development and environmental responses.

  Xuejing Wang; Nobutoshi Yamaguchi

  Current opinion in plant biology, 03 Jun. 2024, Last author, Corresponding author

  
• Plant Molecular Phenology and Climate Feedbacks Mediated by BVOCs.

  Akiko Satake; Tomika Hagiwara; Atsushi J Nagano; Nobutoshi Yamaguchi; Kanako Sekimoto; Kaori Shiojiri; Kengo Sudo

  Annual review of plant biology, 21 Feb. 2024

  
• Petal abscission is promoted by jasmonic acid-induced autophagy at Arabidopsis petal bases

  Yuki Furuta; Haruka Yamamoto; Takeshi Hirakawa; Akira Uemura; Margaret Anne Pelayo; Hideaki Iimura; Naoya Katagiri; Noriko Takeda-Kamiya; Kie Kumaishi; Makoto Shirakawa; Sumie Ishiguro; Yasunori Ichihashi; Takamasa Suzuki; Tatsuaki Goh; Kiminori Toyooka; Toshiro Ito; Nobutoshi Yamaguchi

  Nature Communications, 06 Feb. 2024, Last author, Corresponding author

  
• Old school, new rules: floral meristem development revealed by 3D gene expression atlases and high-resolution transcription factor–chromatin dynamics

  Margaret Anne Pelayo; Nobutoshi Yamaguchi

  Frontiers in Plant Science, 13 Dec. 2023, Peer-reviewed, Corresponding author

  
• Co-option and neofunctionalization of stomatal executors for defense against herbivores in Brassicales

  Makoto Shirakawa; Tomoki Oguro; Shigeo Sugano; Shohei Yamaoka; Mayu Sagara; Mai Tanida; Kyoko Sunuma; Takuya Iwami; Tatsuyoshi Nakanishi; Keita Horiuchi; Kie Kumaishi; Soma Yoshida; Mutsumi Watanabe; Takayuki Tohge; Takamasa Suzuki; Yasunori Ichihashi; Atsushi Takemiya; Nobutoshi Yamaguchi; Takayuki Kohchi; Toshiro Ito

  Nature plants, 11 Dec. 2023

  
• Beyond heat waves: Unlocking epigenetic heat stress memory in Arabidopsis.

  Haruki Nishio; Taiji Kawakatsu; Nobutoshi Yamaguchi

  Plant physiology, 25 Oct. 2023, Peer-reviewed, Invited, Last author, Corresponding author

  
• Transcriptional Regulators of Plant Adaptation to Heat Stress

  Xuejing Wang; Nicholas Wui Kiat Tan; Fong Yi Chung; Nobutoshi Yamaguchi; Eng-Seng Gan; Toshiro Ito

  International Journal of Molecular Sciences, 27 Aug. 2023

  
• Seed Halopriming: A Promising Strategy to Induce Salt Tolerance in Indonesian Pigmented Rice

  Yekti Asih Purwestri; Siti Nurbaiti; Sekar Pelangi Manik Putri; Ignasia Margi Wahyuni; Siti Roswiyah Yulyani; Alfino Sebastian; Tri Rini Nuringtyas; Nobutoshi Yamaguchi

  Plants, 05 Aug. 2023, Peer-reviewed, Last author

  
• The regulation of chromatin configuration at AGAMOUS locus by LFR-SYD-containing complex is critical for reproductive organ development in Arabidopsis.

  Xiaowei Lin; Tingting Yuan; Hong Guo; Yi Guo; Nobutoshi Yamaguchi; Shuge Wang; Dongxia Zhang; Dongmei Qi; Jiayu Li; Qiang Chen; Xinye Liu; Long Zhao; Jun Xiao; Doris Wagner; Sujuan Cui; Hongtao Zhao

  The Plant journal : for cell and molecular biology, 21 Jul. 2023, Peer-reviewed

  
• AGAMOUS regulates various target genes via cell cycle–coupled H3K27me3 dilution in floral meristems and stamens

  Margaret Anne Pelayo; Fumi Morishita; Haruka Sawada; Kasumi Matsushita; Hideaki Iimura; Zemiao He; Liang Sheng Looi; Naoya Katagiri; Asumi Nagamori; Takamasa Suzuki; Marek Širl; Aleš Soukup; Akiko Satake; Toshiro Ito; Nobutoshi Yamaguchi

  Plant Cell, May 2023, Peer-reviewed, Last author, Corresponding author

  
• A phase-separated transcription factor regulates an interspecific barrier

  Sota Fujii; Eri Yamamoto; Surachat Tangpranomkorn; Yuka Kimura; Hiroki Miura; Nobutoshi Yamaguchi; Maki Niidome; Hiroko Shimosato-Asano; Yoshinobu Kato; Yuko Wada; Toshiro Ito; Seiji Takayama

  Nature plants, 28 Oct. 2022

  
• Seed Halopriming Improves Salinity Tolerance of Some Rice Cultivars During Seedling Stage.

  Anik Hidayah; Rizka Rohmatin Nisak; Febri Adi Susanto; Tri Rini Nuringtyas; Nobutoshi Yamaguchi; Yekti Asih Purwestri

  Botanical studies, 25 Jul. 2022, Peer-reviewed

  
• Identification and characterization of drought-tolerant local pigmented rice from Indonesia.

  Alfino Sebastian; Ilham Cahyo Nugroho; Herdin Surya Dwi Putra; Febri Adi Susanto; Putri Wijayanti; Nobutoshi Yamaguchi; Tri Rini Nuringtyas; Yekti Asih Purwestri

  Physiology and molecular biology of plants : an international journal of functional plant biology, May 2022, Peer-reviewed

  
• A histone modification-based synthetic circuit to engineer temporal gene expression in Arabidopsis floral meristems

  Margaret Pelayo; Haruka Sawada; Kasumi Matsushita; Zemiao He; Liang Sheng Looi; Naoya Katagiri; Nobutoshi Yamaguchi; Toshiro Ito

  19 Jan. 2022

  
• Editorial: Epigenetics in Plant Development.

  Nobutoshi Yamaguchi

  Frontiers in plant science, 2022, Peer-reviewed, Lead author, Last author, Corresponding author

  
• H3K27me3 demethylases alter HSP22 and HSP17.6C expression in response to recurring heat in Arabidopsis

  Nobutoshi Yamaguchi; Satoshi Matsubara; Kaori Yoshimizu; Motohide Seki; Kouta Hamada; Mari Kamitani; Yuko Kurita; Yasuyuki Nomura; Kota Nagashima; Soichi Inagaki; Takamasa Suzuki; Eng-Seng Gan; Taiko To; Tetsuji Kakutani; Atsushi J. Nagano; Akiko Satake; Toshiro Ito

  Nature Communications, Dec. 2021, Peer-reviewed, Lead author, Corresponding author

  
• The epigenetic mechanisms regulating floral hub genes and their potential for manipulation.

  Nobutoshi Yamaguchi

  Journal of experimental botany, 09 Nov. 2021, Peer-reviewed, Invited, Corresponding author

  
• Heat memory in plants: histone modifications, nucleosome positioning and miRNA accumulation alter heat memory gene expression.

  Nobutoshi Yamaguchi

  Genes & genetic systems, 16 Sep. 2021, Peer-reviewed, Invited, Lead author, Corresponding author

  
• Expression profiling of H3K27me3 demethylase genes during plant development and in response to environmental stress in Arabidopsis

  Nobutoshi Yamaguchi; Toshiro Ito

  Plant Signaling & Behavior, 06 Jul. 2021, Peer-reviewed, Lead author, Corresponding author

  
• LEAFY, a Pioneer Transcription Factor in Plants: A Mini-Review

  Nobutoshi Yamaguchi

  Frontiers in Plant Science, 05 Jul. 2021, Peer-reviewed, Lead author, Corresponding author

  
• Removal of H3K27me3 by JMJ Proteins Controls Plant Development and Environmental Responses in Arabidopsis

  Nobutoshi Yamaguchi

  Frontiers in Plant Science, 17 Jun. 2021, Peer-reviewed, Lead author, Corresponding author

  
• JMJ Histone Demethylases Balance H3K27me3 and H3K4me3 Levels at the HSP21 Locus during Heat Acclimation in Arabidopsis

  Nobutoshi Yamaguchi; Toshiro Ito

  Biomolecules, 07 Jun. 2021, Peer-reviewed, Lead author, Corresponding author

  
• One factor, many systems: the floral homeotic protein AGAMOUS and its epigenetic regulatory mechanisms.

  Margaret Anne Pelayo; Nobutoshi Yamaguchi; Toshiro Ito

  Current opinion in plant biology, 25 Feb. 2021, Peer-reviewed, Corresponding author

  
• TERMINAL FLOWER 1-FD complex target genes and competition with FLOWERING LOCUS T

  Yang Zhu; Samantha Klasfeld; Cheol Woong Jeong; Run Jin; Koji Goto; Nobutoshi Yamaguchi; Doris Wagner

  Nature Communications, 12 Oct. 2020, Peer-reviewed

  
• Removal of repressive histone marks creates epigenetic memory of recurring heat inArabidopsis

  Nobutoshi Yamaguchi; Satoshi Matsubara; Kaori Yoshimizu; Motohide Seki; Kouta Hamada; Mari Kamitani; Yuko Kurita; Soichi Inagaki; Takamasa Suzuki; Eng-Seng Gan; Taiko To; Tetsuji Kakutani; Atsushi J. Nagano; Akiko Satake; Toshiro Ito

  BioRxiv, 11 May 2020, Peer-reviewed

  
• Florigen family chromatin recruitment, competition and target genes

  Yang Zhu, Samantha Klasfeld, Cheol Woong Jeong, Run Jin, Koji Goto, Nobutoshi Yamaguchi, Doris Wagner

  bioRxiv, 04 Feb. 2020

  
• Histone Demethylases Coordinate the Antagonistic Interaction Between Abscisic Acid and Brassinosteroid Signaling in Arabidopsis.

  Jinfeng Wu; Mingli Yan; Dawei Zhang; Dinggang Zhou; Nobutoshi Yamaguchi; Toshiro Ito

  Frontiers in plant science, 2020, Corresponding author

  
• Morphological and Physiological Framework Underlying Plant Longevity in Arabidopsis thaliana.

  Yukun Wang; Kie Kumaishi; Takamasa Suzuki; Yasunori Ichihashi; Nobutoshi Yamaguchi; Makoto Shirakawa; Toshiro Ito

  Frontiers in plant science, 2020

  
• CRABS CLAW and SUPERMAN Coordinate Hormone-, Stress-, and Metabolic-Related Gene Expression During Arabidopsis Stamen Development

  Ze Hong Lee, Yoshitaka Tatsumi, Yasunori Ichihashi, Takamasa Suzuki, Arisa Shibata, Ken Shirasu, Nobutoshi Yamaguchi, Toshiro Ito

  Frontiers in Ecology and Evolution, 30 Oct. 2019, Peer-reviewed

  
• Lateral root initiation requires the sequential induction of transcription factors LBD16 and PUCHI in Arabidopsis thaliana.

  Tatsuaki Goh; Koichi Toyokura; Nobutoshi Yamaguchi; Yoshie Okamoto; Takeo Uehara; Shutaro Kaneko; Yumiko Takebayashi; Hiroyuki Kasahara; Yoshifumi Ikeyama; Yoko Okushima; Keiji Nakajima; Tetsuro Mimura; Masao Tasaka; Hidehiro Fukaki

  The New phytologist, Oct. 2019, Peer-reviewed

  
• The Roles of Plant Hormones and Their Interactions with Regulatory Genes in Determining Meristem Activity

  Ze Hong Lee; Takeshi Hirakawa; Nobutoshi Yamaguchi; Toshiro Ito

  International Journal of Molecular Sciences, Aug. 2019, Peer-reviewed

  
• Integration of transcriptional repression and Polycomb-mediated silencing of WUSCHEL in floral meristems.

  Sun B; Zhou Y; Cai J; Shang E; Yamaguchi N; Xiao J; Looi LS; Wee WY; Gao X; Wagner D; Ito T

  The Plant cell, May 2019, Peer-reviewed

  
• Histone demethylases control root elongation in response to stress-signaling hormone abscisic acid.

  Wu J; Yamaguchi N; Ito T

  Plant signaling & behavior, Apr. 2019, Peer-reviewed, Corresponding author

  
• When to stop: an update on molecular mechanisms of floral meristem termination.

  Xu Y; Yamaguchi N; Gan ES; Ito T

  Journal of experimental botany, Mar. 2019, Peer-reviewed

  
• Abscisic acid-dependent histone demethylation during post-germination growth arrest in Arabidopsis.

  Wu J; Ichihashi Y; Suzuki T; Shibata A; Shirasu K; Yamaguchi N; Ito T

  Plant, cell & environment, Mar. 2019, Peer-reviewed, Corresponding author

  
• Chromatin-mediated feed-forward auxin biosynthesis in floral meristem determinacy.

  Yamaguchi N; Huang J; Tatsumi Y; Abe M; Sugano SS; Kojima M; Takebayashi Y; Kiba T; Yokoyama R; Nishitani K; Sakakibara H; Ito T

  Nature communications, Dec. 2018, Peer-reviewed

  
• SUPERMAN regulates floral whorl boundaries through control of auxin biosynthesis

  Yifeng Xu; Nathanaël Prunet; Eng-Seng Gan; Yanbin Wang; Darragh Stewart; Frank Wellmer; Jiangbo Huang; Nobutoshi Yamaguchi; Yoshitaka Tatsumi; Mikiko Kojima; Takatoshi Kiba; Hitoshi Sakakibara; Thomas P Jack; Elliot M Meyerowitz; Toshiro Ito

  EMBO Journal, 01 Jun. 2018, Peer-reviewed

  
• Regulation of floral meristem activity through the interaction of AGAMOUS, SUPERMAN, and CLAVATA3 in Arabidopsis

  Akira Uemura; Nobutoshi Yamaguchi; Yifeng Xu; Wan Yi Wee; Yasunori Ichihashi; Takamasa Suzuki; Arisa Shibata; Ken Shirasu; Toshiro Ito

  Plant Reproduction, 01 Mar. 2018, Peer-reviewed

  
• Using CRISPR/Cas9 System to Introduce Targeted Mutation in Arabidopsis.

  Lee ZH; Yamaguchi N; Ito T

  Methods in molecular biology (Clifton, N.J.), 2018, Peer-reviewed

  
• Gene Expression and Transcription Factor Binding Tests Using Mutated-Promoter Reporter Lines.

  Nishizawa-Yokoi A; Yamaguchi N

  Methods in molecular biology (Clifton, N.J.), 2018, Peer-reviewed

  
• Fine-tuning of auxin homeostasis governs the transition from floral stem cell maintenance to gynoecium formation

  Nobutoshi Yamaguchi; Jiangbo Huang; Yifeng Xu; Keitaro Tanoi; Toshiro Ito

  NATURE COMMUNICATIONS, Oct. 2017, Peer-reviewed

  
• Gene network controlling flower development in

  Kadoya, Y; Yamaguchi, N; Ito, T

  Seibutu to Kagaku, 2017, Peer-reviewed

  
• AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis

  Nobutoshi Yamaguchi; Cheol Woong Jeong; Staci Nole-Wilson; Beth A. Krizek; Doris Wagner

  PLANT PHYSIOLOGY, Jan. 2016, Peer-reviewed

  
• Auxin-regulated chromatin switch directs acquisition of flower primordium founder fate

  Miin-Feng Wu; Nobutoshi Yamaguchi; Jun Xiao; Bastiaan Bargmann; Mark Estelle; Yi Sang; Doris Wagner

  ELIFE, Oct. 2015, Peer-reviewed

  
• Transcriptional programs regulated by both LEAFY and APETALA1 at the time of flower formation

  Cara M. Winter; Nobutoshi Yamaguchi; Miin-Feng Wu; Doris Wagner

  PHYSIOLOGIA PLANTARUM, Sep. 2015, Peer-reviewed

  
• Identification of direct targets of plant transcription factors using the GR fusion technique.

  Yamaguchi N; Winter CM; Wellmer F; Wagner D

  Methods in molecular biology (Clifton, N.J.), 2015, Peer-reviewed

  
• PLANT DEVELOPMENT Integration of growth and patterning during vascular tissue formation in Arabidopsis

  Bert De Rybel; Milad Adibi; Alice S. Breda; Jos R. Wendrich; Margot E. Smit; Ondrej Novak; Nobutoshi Yamaguchi; Saiko Yoshida; Gert Van Isterdael; Joakim Palovaara; Bart Nijsse; Mark V. Boekschoten; Guido Hooiveld; Tom Beeckman; Doris Wagner; Karin Ljung; Christian Fleck; Dolf Weijers

  SCIENCE, Aug. 2014, Peer-reviewed

  
• Gibberellin Acts Positively Then Negatively to Control Onset of Flower Formation in Arabidopsis

  Nobutoshi Yamaguchi; Cara M. Winter; Miin-Feng Wu; Yuri Kanno; Ayako Yamaguchi; Mitsunori Seo; Doris Wagner

  SCIENCE, May 2014, Peer-reviewed

  
• LEAFY and Polar Auxin Transport Coordinately Regulate Arabidopsis Flower Development.

  Yamaguchi N; Wu MF; Winter CM; Wagner D

  Plants (Basel, Switzerland), Apr. 2014, Peer-reviewed

  
• PROTOCOLS: Chromatin Immunoprecipitation from Arabidopsis Tissues.

  Yamaguchi N; Winter CM; Wu MF; Kwon CS; William DA; Wagner D

  The arabidopsis book, 2014, Peer-reviewed

  
• The role of CORYMBOSA1/BIG and auxin in the growth of Arabidopsis pedicel and internode

  Nobutoshi Yamaguchi; Yoshibumi Komeda

  Plant Science, Aug. 2013, Peer-reviewed

  
• A Molecular Framework for Auxin-Mediated Initiation of Flower Primordia

  Nobutoshi Yamaguchi; Miin-Feng Wu; Cara M. Winter; Markus C. Berns; Staci Nole-Wilson; Ayako Yamaguchi; George Coupland; Beth A. Krizek; Doris Wagner

  DEVELOPMENTAL CELL, Feb. 2013, Peer-reviewed

  
• Mutations in two non-canonical Arabidopsis SWI2/SNF2 chromatin remodeling ATPases cause embryogenesis and stem cell maintenance defects

  Yi Sang; Claudia O. Silva-Ortega; Shuang Wu; Nobutoshi Yamaguchi; Miin-Feng Wu; Jennifer Pfluger; C. Stewart Gillmor; Kimberly L. Gallagher; Doris Wagner

  PLANT JOURNAL, Dec. 2012, Peer-reviewed

  
• LEAFY controls Arabidopsis pedicel length and orientation by affecting adaxial-abaxial cell fate

  Nobutoshi Yamaguchi; Ayako Yamaguchi; Mitsutomo Abe; Doris Wagner; Yoshibumi Komeda

  PLANT JOURNAL, Mar. 2012, Peer-reviewed

  
• SWI2/SNF2 chromatin remodeling ATPases overcome polycomb repression and control floral organ identity with the LEAFY and SEPALLATA3 transcription factors

  Miin-Feng Wu; Yi Sang; Staver Bezhani; Nobutoshi Yamaguchi; Soon-Ki Han; Zhenteng Li; Yanhui Su; Thomas L. Slewinski; Doris Wagner

  PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, Feb. 2012, Peer-reviewed

  
• LATE MERISTEM IDENTITY2 acts together with LEAFY to activate APETALA1

  Jennifer J. Pastore; Andrea Limpuangthip; Nobutoshi Yamaguchi; Miin-Feng Wu; Yi Sang; Soon-Ki Han; Lauren Malaspina; Natasha Chavdaroff; Ayako Yamaguchi; Doris Wagner

  DEVELOPMENT, Aug. 2011, Peer-reviewed

  
• LEAFY Target Genes Reveal Floral Regulatory Logic, cis Motifs, and a Link to Biotic Stimulus Response

  Cara M. Winter; Ryan S. Austin; Servane Blanvillain-Baufume; Maxwell A. Reback; Marie Monniaux; Miin-Feng Wu; Yi Sang; Ayako Yamaguchi; Nobutoshi Yamaguchi; Jane E. Parker; Francois Parcy; Shane T. Jensen; Hongzhe Li; Doris Wagner

  DEVELOPMENTAL CELL, Apr. 2011, Peer-reviewed

  
• Functional characterization of CCA1/LHY homolog genes, PpCCA1a and PpCCA1b, in the moss Physcomitrella patens

  Ryo Okada; Sayo Kondo; Santosh B. Satbhai; Nobutoshi Yamaguchi; Masashi Tsukuda; Setsuyuki Aoki

  PLANT JOURNAL, Nov. 2009, Peer-reviewed

  
• CRM1/BIG-mediated auxin action regulates Arabidopsis inflorescence development

  Nobutoshi Yamaguchi; Mitsuhiro Suzuki; Hidehiro Fukaki; Miyo Morita-Terao; Masao Tasaka; Yoshibumi Komeda

  PLANT AND CELL PHYSIOLOGY, Sep. 2007, Peer-reviewed

  

Misc.

• 花びらを脱離させる「ジャスモン酸-オートファジー経路」の解明

  古田優生; 山口暢俊; 伊藤寿朗

  バイオサイエンスとインダストリー, 2025

  
• 野外から明らかにする植物の遺伝子の使い方と使われ方—特集 植物気候フィードバック : 植物と気候の相互作用を探る

  永野 惇; 山口 暢俊

  Milsil = ミルシル : 自然と科学の情報誌, Sep. 2024

  
• AGAMOUSによる花メリステムの細胞増殖停止機構—Molecular mechanism of AGAMOUS-mediated floral meristem termination

  古田 優生; 山口 暢俊; 伊藤 寿朗

  アグリバイオ = Agricultural biotechnology, Dec. 2023

  
• フェムト秒レーザー誘起衝撃力と原子間力顕微鏡を用いた微小植物組織の弾性検出

  渡辺 てい; 上村 祥; 高島 喜也; 山口 暢俊; 伊藤 寿朗; 安國 良平; 細川 陽一郎

  レーザー学会学術講演会第38回年次大会, 25 Jan. 2018

  
• Gene Regulatory Network for Reproductive Development Mediated by Floral Homeotic Genes

  KADOYA Yuka; YAMAGUCHI Nobutoshi; ITO Toshiro

  KAGAKU TO SEIBUTSU, 2017

  
• KNUCKLES発現誘導における修飾ヌクレオソーム数と分裂回数の関係性の解析

  松下夏純; 山口暢俊; 佐竹暁子; 伊藤寿朗

  日本分子生物学会年会プログラム・要旨集(Web), 2016

  
• Functional characterization of CCA1/LHY homolog genes, PpCCA1a and PpCCA1b), in the moss Physcomitrella patens

  Ryo Okada; Satbhai Santosh; Sayo Kondo; Nobutoshi Yamaguchi; Setsuyuki Aoki

  GENES & GENETIC SYSTEMS, Dec. 2009

  
• The LEAFY regulates temporally and spatially the orientation of pedicels and fruits in Arabidopsis thaliana.

  Yamaguchi Nobutoshi; Komeda Yoshibumi

  Plant and Cell Physiology Supplement, 2009

  
• The roles of CORMBOSA1/BIG and LEAFY on plant architecture

  Yamaguchi Nobotoshi; Suzuki Mitsuhiro; Komeda Yoshibumi

  Plant and Cell Physiology Supplement, 2008

  
• The regulation of inflorescence architecture in Arabidopsis.

  YAMAGUCHI Nobutoshi; KOMEDA Yoshibumi

  PLANT MORPHOLOGY, 2008

  
• Molecular genetic analysis of the floral pathway using the PDF2 overexpression plants in arabidopsis

  Mitsubiro Suzuki; Ayako Watanabe; Takashi Morishita; Hideaki Watanabe; Nobutoshi Yamaguchi; Yoshiaki Matsuyama; Yoshibumi Komeda

  PLANT AND CELL PHYSIOLOGY, 2007

  
• Molecular genetic analysis of the corymbosa1 mutants in Arabidopsis Thaliana

  Nobutoshi Yamaguchi; Mitsuhiro Suzuki; Hidehiro Fukaki; Miyo (terao) Morita; Masao Tasaka; Yoshiburni Komeda

  PLANT AND CELL PHYSIOLOGY, 2007

  
• MOLECULAR GENETIC ANALYSIS OF THE LATE-FLOWERING PHENOTYPE OF THE PDF2 OVEREXPRESSION PLANTS IN ARABIDOPSIS

  SUZUKI Mitsuhiro; YAMAGUCHI Nobutoshi; WATANABE Hideaki; MORISHITA Takashi; MATSUYAMA Yoshiaki; KOMEDA Yoshibumi

  Journal of plant research, 01 Dec. 2006

  
• Genetic regulation of the floral integrators in Arabidopsis thaliana

  M Suzuki; N Yamaguchi; H Watanabe; T Morishita; Y Matsuyama; Y Komeda

  PLANT AND CELL PHYSIOLOGY, 2006

  
• Molecular Analysis of the corymbosa1 mutants in Arabidopsis thaliana

  N Yamaguchi; M Suzuki; F Fukaki; M Terao-Morita; M Tasaka; Y Komeda

  PLANT AND CELL PHYSIOLOGY, 2006

  

Presentations

• Chromatin-mediated feed-forward regulation of YUCCA4 expression by AGAMOUS and CRABS CLAWdirects gynoecium formation

  Nobutoshi Yamaguchi; Toshiro Ito

  25th ICSPR 2018, 16 Jun. 2018

  
• Upstream and downstream of the floral meristem identity gene,LEAFY

  Nobutoshi Yamaguchi

  第59回日本植物生理学会年会, Mar. 2018

  
• Regulation of floral meristem activity through the interaction of AGAMOUS, SUPERMAN, and CLAVATA3 in Arabidopsis

  Akira Uemura; Nobutoshi Yamaguchi; Yifeng Xu; WanYi Wee; Yasunori Ichihashi; Takamasa Suzuki; Arisa Shibata; Ken Shirasu; Toshiro Ito

  第59回日本植物生理学会年会, Mar. 2018

  
• Multi-step termination of floral stem cell activities in Arabidopsis

  Toshiro Ito; Nobutoshi Yamaguchi; Yifeng xu; Bo Sun

  第59回日本植物生理学会年会, Mar. 2018

  
• Measurement of Morphological Changes in the Processes of Plant Phototropism

  Yoshiya Takashima; Tei Watanabe; Akira Uemura; Nobutoshi Yamaguchi; Che-Lun Hsu; Yi-Chih Liang; Po-Wei Yi; Fu-Jen Kao; Toshiro Ito; Yoichiroh Hosokawa

  2018 Annual Meeting of the Physical Society of Taiwan, 25 Jan. 2018

  
• フェムト秒レーザー誘起衝撃力と原子間力顕微鏡を用いた微小植物組織の弾性検出

  渡辺 てい; 上村 祥; 高島 喜也; 山口 暢俊; 伊藤 寿朗; 安國 良平; 細川 陽一郎

  レーザー学会学術講演会第38回年次大会, 25 Jan. 2018

  
• 花幹細胞の増殖を制御するKNUCKLES遺伝子の発現制御機構の解析

  澤田 遥; 松下 夏純; 山口 暢俊; 伊藤 寿朗

  ConBio2017, 07 Dec. 2017

  
• シロイヌナズナのヒストン修飾酵素と相互作用する因子の同定と機能解析

  阿部 真人; 山口 暢俊; 伊藤 寿朗

  ConBio2017, 07 Dec. 2017

  
• Floral meristem development in Arabidopsis

  Nobutoshi Yamaguchi

  Taiwan-Japan Plant Biology 2017, 05 Nov. 2017

  
• The role of JUMONJI on ABA signaling in Arabidopsis thaliana

  Jinfeng Wu; Nobutoshi Yamaguchi; Toshiro Ito

  第58回日本植物生理学会年会, 18 Mar. 2017

  
• 花幹細胞の増殖抑制を制御する3つの鍵遺伝子の遺伝学的な相互作用の解析

  上村 祥; 山口 暢俊; 伊藤 寿朗

  第58回日本植物生理学会年会, 16 Mar. 2017

  
• 光環境応答におけるSET DOMAIN GROUP(SDG)による成長制御の解析

  角谷 侑香; 佐伯 健; 山口 暢俊; 伊藤 寿朗

  第58回日本植物生理学会年会, 16 Mar. 2017

  
• Heat acclimation in plants: Adaptation to different environmental conditions by epigenetic memory

  Nobutoshi Yamaguchi

  International symposium on environmental stress adaptation and memory in plants, RIKEN, 27 Feb. 2017, Invited

  
• Fine-tuning of auxin transport switches from floral stem cell maintenance to gynoecium formation

  Nobutoshi Yamaguchi; Huang Jiangbo; Yifeng Xu; Toshiro Ito

  Latest Advances in Plant Development & Environmental Response, 01 Dec. 2016

  
• KNUCKLES発現誘導における修飾ヌクレオソーム数と分裂回数の関係性の解析

  松下 夏純; 山口 暢俊; 佐竹 暁子; 伊藤 寿朗

  第39回日本分子生物学会年会, 01 Dec. 2016

  
• 花幹細胞の活性を制御するCRCの下流の遺伝子カスケードの解析

  辰見 嘉隆; 山口 暢俊; 伊藤 寿朗

  第39回日本分子生物学会年会, 01 Dec. 2016

  
• 花幹細胞の増殖抑制を制御する3つの鍵遺伝子の遺伝学的な相互作用の解析

  上村 祥; 渡辺 てい; 山口 暢俊; 細川 陽一郎; 伊藤 寿朗

  第39回日本分子生物学会年会, 30 Nov. 2016

  
• 側根形成におけるSET DOMAIN GROUPとPRC2コンプレックスの関係の遺伝学的解析

  今井 袈成恵; 佐伯 健; 山口 暢俊; 伊藤 寿朗

  第39回日本分子生物学会年会, 30 Nov. 2016

  
• 光環境によって獲得された形質が遺伝する分子基盤の解明と実用植物への応用

  山口 暢俊

  さきがけ「フィールドにおける植物の生命現象の制御に向けた次世代基盤技術の創出」第２回領域会議, 20 Jul. 2016

  
• Regulation of plant growth by SET DOMAIN GROUP in light environmental response

  Yuka Kadoya; Takeru Saiki; Nobutoshi Yamaguchi; Toshiro Ito

  ICAR2016KOREA, 01 Jul. 2016

  
• ヒストン脱メチル酵素JUMONJIによる温度記憶の制御機構の解析

  山口 暢俊

  新学術領域研究「環境記憶統合」領域会議, 27 May 2016

  
• A molecular framework for hormonal control of floral meristem termination in Arabidopsis thaliana.

  Nobutoshi Yamaguchi; Huang Jiangbo; Toshiro Ito

  The Tri-lateral NAIST-TLL-CU Joint Symposium 2016, 28 Mar. 2016, Invited

  
• シロイヌナズナにおけるJUMONJIを介したエピジェネティックな制御による熱耐性機構の解析

  平井 光; 松原 聡; 山口 暢俊; 伊藤 寿朗

  第57回日本植物生理学会年会, 20 Mar. 2016

  
• A molecular mechanism for AGAMOUS-mediated termination of floral meristem.

  Nobutoshi Yamaguchi; Toshiro Ito

  第57回日本植物生理学会年会, 19 Mar. 2016

  
• Regulation of plant growth and flowering by SET DOMAIN GROUP in light environmental response

  角谷 侑香; 佐伯 健; 山口 暢俊; 伊藤 寿朗

  第57回日本植物生理学会年会, 18 Mar. 2016

  
• Elucidation of plant morphogenesis mechanism by interactions between SET DOMAIN GROUP and auxin

  佐伯 健; 角谷 侑香; 山口 暢俊; 伊藤 寿朗

  第57回日本植物生理学会年会, 18 Mar. 2016

  
• A molecular mehanism for flower and branch formation in Arabidopsis.

  Nobutoshi Yamaguchi

  Tenasek lifescience laboratory seminar, National University of Singapore, 29 Jan. 2016, Invited

  
• An epigenetic processor to coordinate growth and differentiation of floral stem cells

  Nobutoshi Yamaguchi; Toshiro Ito

  第38回日本分子生物学会年会, 04 Dec. 2015, Invited

  
• AGAMOUSを中心とした花幹細胞の増殖を抑制する遺伝子制御機構の解析

  山口 暢俊; 伊藤 寿朗

  第38回日本分子生物学会年会, 04 Dec. 2015

  
• AGAMOUSを中心とした花幹細胞の増殖を抑制する遺伝子制御機構の解析

  山口 暢俊; 伊藤 寿朗

  第38回日本分子生物学会年会, 03 Dec. 2015

  
• SET DOMAIN GROUPによるヒストン修飾を介した植物の成長制御機構の解析

  佐伯 健; 角谷 侑香; 山口 暢俊; 伊藤 寿朗

  第38回日本分子生物学会年会, 03 Dec. 2015

  
• JUMONJIを介した植物の高温耐性機構の解析

  松原 聡; 平井 光; 山口 暢俊; 伊藤 寿朗

  第38回日本分子生物学会年会, 03 Dec. 2015

  
• Auxin-regulated chromatin state switch directs flower primordium initiation

  山口 暢俊

  国立遺伝学研究所研究会「植物の生殖成長期の発生を制御する分子機構」, 06 Nov. 2015, Invited

  

Awards

• 22 Aug. 2019

  令和元年度第16回梅園賞（奈良先端科学技術大学院大学）
• 09 Nov. 2020

  2021年度日本植物生理学会奨励賞（日本植物生理学会）
• 29 Jul. 2021

  令和3年度バイオ領域賞（奈良先端科学技術大学院大学）
• 10 Apr. 2018

  平成30年度科学技術分野の文部科学大臣表彰若手科学者賞（文部科学省）

External funds: Kakenhi

• 高温ストレスに対する植物の階層縦断的分子応答

  Grant-in-Aid for Scientific Research (B)

  Basic Section 44030:Plant molecular biology and physiology-related

  Nara Institute of Science and Technology

  山口 暢俊

  From 01 Apr. 2026, To 31 Mar. 2029, Granted

  植物;高温;エピゲノム;スプライシング;アクアポリン

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-26K02031/
• 植物生殖と連動した器官死と個体死の分子基盤の解明

  Grant-in-Aid for Scientific Research (A)

  Medium-sized Section 44:Biology at cellular to organismal levels, and related fields

  Nara Institute of Science and Technology

  伊藤 寿朗

  From 01 Apr. 2026, To 31 Mar. 2030, Granted

  植物生殖;花発生;器官死;個体死;エピゲノム

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-26H02380/
• 木本の開花と結実のエピジェネティクス

  Grant-in-Aid for Challenging Research (Exploratory)

  Medium-sized Section 44:Biology at cellular to organismal levels, and related fields

  Nara Institute of Science and Technology

  山口 暢俊

  From 27 Jun. 2025, To 31 Mar. 2027, Granted

  植物;樹木;エピジェネティクス;環境応答

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-25K22474/
• 花弁基部の細胞動態に注目した脱離制御機構の解明

  Grant-in-Aid for Scientific Research (B)

  Basic Section 44030:Plant molecular biology and physiology-related

  Nara Institute of Science and Technology

  山口 暢俊

  From 01 Apr. 2023, To 31 Mar. 2026, Granted

  シロイヌナズナ;花;ジャスモン酸;オートファジー;植物;花弁脱離;遺伝子発現;エピゲノム;花発生

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-23K27195/
• BVOC放出とストレス耐性を連動させるエピゲノム分子基盤の解明

  Grant-in-Aid for Transformative Research Areas (A)

  Transformative Research Areas, Section (IV)

  Nara Institute of Science and Technology

  山口 暢俊

  From 01 Apr. 2023, To 31 Mar. 2028, Granted

  イソプレン;植物;シロイヌナズナ;エピジェネティクス;エピゲノム;遺伝子発現;高温応答;BVOC;ヒストン修飾;転写因子;高温耐性

  https://kaken.nii.ac.jp/grant/KAKENHI-PLANNED-23H04968/
• Support activities to promote plant-climate feedbacks

  Grant-in-Aid for Transformative Research Areas (A)

  Transformative Research Areas, Section (IV)

  Kyushu University

  佐竹 暁子

  From 01 Apr. 2023, To 31 Mar. 2028, Granted

  揮発性有機化合物;エアロゾル;植物フェノロジー;植物分子;気候変動;BVOC測定装置;植物間コミュニケーション

  https://kaken.nii.ac.jp/grant/KAKENHI-ORGANIZER-23H04965/
• 不規則な温度に対する植物の多層的レジリエンス機構

  Grant-in-Aid for Transformative Research Areas (A)

  Transformative Research Areas, Section (III)

  Nara Institute of Science and Technology

  山口 暢俊

  From 10 Sep. 2021, To 31 Mar. 2023, Granted

  植物生理学;分子遺伝学;転写因子;高温応答;植物;シロイヌナズナ;環境応答;エピゲノム

  https://kaken.nii.ac.jp/grant/KAKENHI-PUBLICLY-21H05663/
• Molecular mechanisms for the number and size control of flowers through the balance of proliferation, differentiation, and senescence of plant stem cells

  Grant-in-Aid for Scientific Research (A)

  Medium-sized Section 44:Biology at cellular to organismal levels, and related fields

  Nara Institute of Science and Technology

  Toshiro Ito

  From 01 Apr. 2020, To 31 Mar. 2024, Project Closed

  発現制御;発生・分化;細胞周期;シグナル伝達;幹細胞

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-20H00470/
• Heat acculimation under field condtions

  Grant-in-Aid for Challenging Research (Exploratory)

  Medium-sized Section 44:Biology at cellular to organismal levels, and related fields

  Nara Institute of Science and Technology

  Yamaguchi Nobutoshi

  From 28 Jun. 2019, To 31 Mar. 2021, Project Closed

  Plant physiology;植物;エピゲノム;環境応答;シロイヌナズナ;高温応答;エピジェネティクス;高温順化

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-19K22431/
• ヒストン脱メチル化酵素JUMONJIによる高温を記憶する分子基盤の解明

  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)

  Nara Institute of Science and Technology

  山口 暢俊

  From 01 Apr. 2018, To 31 Mar. 2020, Project Closed

  エピジェネティクス;植物;高温順化;ヒストン;JUMONJI;植物生理;遺伝子発現;環境

  https://kaken.nii.ac.jp/grant/KAKENHI-PUBLICLY-18H04782/
• A histone modication-based synthetic circuit to engineer temporal gene expression in Arabidopsis floral meristems

  Grant-in-Aid for Scientific Research (B)

  Basic Section 44030:Plant molecular biology and physiology-related

  Nara Institute of Science and Technology

  Yamaguchi Nobutoshi

  From 01 Apr. 2018, To 31 Mar. 2023, Project Closed

  シロイヌナズナ;花発生;エピゲノム;遺伝子発現;転写因子;植物分子遺伝学;エピジェネティクス;花の形態形成

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-18H02465/
• ヒストン脱メチル酵素JUMONJIによる温度記憶の制御機構の解析

  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)

  Biological Sciences

  Nara Institute of Science and Technology

  山口 暢俊

  From 01 Apr. 2016, To 31 Mar. 2018, Project Closed

  エピジェネティクス;環境応答;シロイヌナズナ;高温順化;JUMONJI;植物;エピジェネティックス;生物学;分子遺伝学;植物生理

  https://kaken.nii.ac.jp/grant/KAKENHI-PUBLICLY-16H01468/

Academic, Social Contribution

Committee Memberships

• From Nov. 2022, To Present

  Plants Associate Editor
• From Sep. 2022, To Present

  Scientific Reports Associate Editor
• From Mar. 2021, To Present

  Frontiers in Plant Science Associate Editor
• From Aug. 2025, To Jul. 2027

  学術調査官, 文部科学省
• From Mar. 2024, To Mar. 2026

  選挙管理委員 委員長, 日本植物生理学会
• From Nov. 2022

  Frontiers in Plant Science Guest Associate Editor "The Versatile Roles of Mobile Genetic Elements in Evolution, Growth, Development, and Stress Adaptation of Plants"
• From Sep. 2020, To Dec. 2021

  Frontiers in Plant Science Guest Associate Editor "Epigenetics in Plant Development"
• From Apr. 2016, To Mar. 2018

  会計幹事, 日本植物生理学会