Nakajima, Aruto(Graduate School of Biostudies) | Activity Database on Education and Research, Kyoto University

Nakajima, Aruto

Graduate School of Biostudies Program-Specific Researcher

Last Updated :2025/08/20

From Jun. 2025, To Present
Kyoto University, Graduate School of Biostudies, 特定研究員, 特任助教

From Apr. 2025, To May 2025
Kyoto University, Graduate School of Biostudies, 研究員

Last Updated :2025/08/20

Uptake of fucosylated type I human milk oligosaccharide blocks by Bifidobacterium longum subsp. infantis
Morten Ejby Hansen; Mikiyasu Sakanaka; Mathias Jensen; Hiroka Sakanaka; Michael Jakob Pichler; Shingo Maeda; Julie Franck Høvring; Aruto Nakajima; Sonja Kunstmann; Tine Sofie Nielsen; Günther Herbert Johannes Peters; Dirk Jan Slotboom; Jens Preben Morth; Takane Katayama; Maher Abou Hachem
mBio, 14 Jul. 2025

Ecological insights into the assembly of bifidobacterial communities in the infant gut
Miriam N. Ojima; Mikiyasu Sakanaka; Aruto Nakajima; Toshitaka Odamaki; Takane Katayama
Ecological Research, 22 Jul. 2025

In vitro competition with Bifidobacterium strains impairs potentially pathogenic growth of Clostridium perfringens on 2′-fucosyllactose
Aruto Nakajima; Aleksandr A. Arzamasov; Mikiyasu Sakanaka; Ryuta Murakami; Tomoya Kozakai; Keisuke Yoshida; Toshihiko Katoh; Miriam N. Ojima; Junko Hirose; Saeko Nagao; Jin-Zhong Xiao; Toshitaka Odamaki; Dmitry A. Rodionov; Takane Katayama
Gut Microbes, 18 Mar. 2025
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Suppression of fecal phenol production by oral supplementation of sesamol: inhibition of tyrosine phenol-lyase by sesamol
Daiki Oikawa; Zion Byun; Bunzo Mikami; Aina Gotoh; Toshihiko Katoh; Ryo Ueno; Aruto Nakajima; Satoshi Yamashita; Wakako Ikeda-Ohtsubo; Seiji Takahashi; Toshiyuki Waki; Koichi Kikuchi; Takaaki Abe; Takane Katayama; Toru Nakayama
Food & Function, 2025
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An improved temperature-sensitive shuttle vector system for scarless gene deletion in human gut-associated Bifidobacterium species
Tomoya Kozakai; Aruto Nakajima; Keisuke Miyazawa; Yuki Sasaki; Toshitaka Odamaki; Toshihiko Katoh; Takeshi Fukuma; Jin-zhong Xiao; Tohru Suzuki; Takane Katayama; Mikiyasu Sakanaka
iScience, 15 Nov. 2024

Human gut-associated Bifidobacterium species salvage exogenous indole, a uremic toxin precursor, to synthesize indole-3-lactic acid via tryptophan
Cheng Chung Yong; Takuma Sakurai; Hiroki Kaneko; Ayako Horigome; Eri Mitsuyama; Aruto Nakajima; Toshihiko Katoh; Mikiyasu Sakanaka; Takaaki Abe; Jin-Zhong Xiao; Miyuki Tanaka; Toshitaka Odamaki; Takane Katayama
Gut Microbes, 05 May 2024
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Human Milk Oligosaccharide Utilization in Intestinal Bifidobacteria Is Governed by Global Transcriptional Regulator NagR
Aleksandr A. Arzamasov; Aruto Nakajima; Mikiyasu Sakanaka; Miriam N. Ojima; Takane Katayama; Dmitry A. Rodionov; Andrei L. Osterman
mSystems, 12 Sep. 2022
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Priority effects shape the structure of infant-type Bifidobacterium communities on human milk oligosaccharides
Miriam N Ojima; Lin Jiang; Aleksandr A Arzamasov; Keisuke Yoshida; Toshitaka Odamaki; Jinzhong Xiao; Aruto Nakajima; Motomitsu Kitaoka; Junko Hirose; Tadasu Urashima; Toshihiko Katoh; Aina Gotoh; Douwe van Sinderen; Dmitry A Rodionov; Andrei L Osterman; Mikiyasu Sakanaka; Takane Katayama
The ISME Journal, 01 Sep. 2022
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A simple method that enhances minority species detection in the microbiota: 16S metagenome-DRIP (Deeper Resolution using an Inhibitory Primer)
Aruto Nakajima; Keisuke Yoshida; Aina Gotoh; Toshihiko Katoh; Miriam N. Ojima; Mikiyasu Sakanaka; Jin-Zhong Xiao; Toshitaka Odamaki; Takane Katayama
Microbiome Research Reports, 30 May 2022
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Diversification of a Fucosyllactose Transporter within the Genus Bifidobacterium
Miriam N. Ojima; Yuya Asao; Aruto Nakajima; Toshihiko Katoh; Motomitsu Kitaoka; Aina Gotoh; Junko Hirose; Tadasu Urashima; Satoru Fukiya; Atsushi Yokota; Maher Abou Hachem; Mikiyasu Sakanaka; Takane Katayama
Applied and Environmental Microbiology, 25 Jan. 2022