Basic Information

Email Address

• Email Address

  nakajima.aruto.5xkyoto-u.ac.jp

Research History

• From Jun. 2025, To Present

  Kyoto University, Graduate School of Biostudies, 特定研究員, 特任助教
• From Apr. 2025, To May 2025

  Kyoto University, Graduate School of Biostudies, 研究員

ID,URL

• ORCID ID

  0000-0002-5354-2394

• J-Global ID

  202501011533262141

researchmap URL

• https://researchmap.jp/arutonakajima

Research

Papers

• In vitro competition with Bifidobacterium strains impairs potentially pathogenic growth of Clostridium perfringens on 2′-fucosyllactose

  Aruto Nakajima; Aleksandr A. Arzamasov; Mikiyasu Sakanaka; Ryuta Murakami; Tomoya Kozakai; Keisuke Yoshida; Toshihiko Katoh; Miriam N. Ojima; Junko Hirose; Saeko Nagao; Jin-Zhong Xiao; Toshitaka Odamaki; Dmitry A. Rodionov; Takane Katayama

  Gut Microbes, 18 Mar. 2025

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• Uptake of fucosylated type I human milk oligosaccharide blocks by Bifidobacterium longum subsp. infantis

  Hansen, Morten Ejby; Sakanaka, Mikiyasu; Jensen, Mathias; Sakanaka, Hiroka; Pichler, Michael Jakob; Maeda, Shingo; Høvring, Julie Franck; Nakajima, Aruto; Kunstmann, Sonja; Nielsen, Tine Sofie; Peters, Günther Herbert Johannes; Slotboom, Dirk Jan; Morth, Jens Preben; Katayama, Takane; Hachem, Maher Abou

  bioRxiv, 2025

  
• Suppression of fecal phenol production by oral supplementation of sesamol: inhibition of tyrosine phenol-lyase by sesamol

  Daiki Oikawa; Zion Byun; Bunzo Mikami; Aina Gotoh; Toshihiko Katoh; Ryo Ueno; Aruto Nakajima; Satoshi Yamashita; Wakako Ikeda-Ohtsubo; Seiji Takahashi; Toshiyuki Waki; Koichi Kikuchi; Takaaki Abe; Takane Katayama; Toru Nakayama

  Food & Function, 2025

  
• An improved temperature-sensitive shuttle vector system for scarless gene deletion in human gut-associated Bifidobacterium species

  Tomoya Kozakai; Aruto Nakajima; Keisuke Miyazawa; Yuki Sasaki; Toshitaka Odamaki; Toshihiko Katoh; Takeshi Fukuma; Jin-zhong Xiao; Tohru Suzuki; Takane Katayama; Mikiyasu Sakanaka

  iScience, 15 Nov. 2024

  
• Human gut-associated Bifidobacterium species salvage exogenous indole, a uremic toxin precursor, to synthesize indole-3-lactic acid via tryptophan

  Cheng Chung Yong; Takuma Sakurai; Hiroki Kaneko; Ayako Horigome; Eri Mitsuyama; Aruto Nakajima; Toshihiko Katoh; Mikiyasu Sakanaka; Takaaki Abe; Jin-Zhong Xiao; Miyuki Tanaka; Toshitaka Odamaki; Takane Katayama

  Gut Microbes, 05 May 2024

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• Human Milk Oligosaccharide Utilization in Intestinal Bifidobacteria Is Governed by Global Transcriptional Regulator NagR

  Aleksandr A. Arzamasov; Aruto Nakajima; Mikiyasu Sakanaka; Miriam N. Ojima; Takane Katayama; Dmitry A. Rodionov; Andrei L. Osterman

  mSystems, 12 Sep. 2022

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• Priority effects shape the structure of infant-type Bifidobacterium communities on human milk oligosaccharides

  Miriam N Ojima; Lin Jiang; Aleksandr A Arzamasov; Keisuke Yoshida; Toshitaka Odamaki; Jinzhong Xiao; Aruto Nakajima; Motomitsu Kitaoka; Junko Hirose; Tadasu Urashima; Toshihiko Katoh; Aina Gotoh; Douwe van Sinderen; Dmitry A Rodionov; Andrei L Osterman; Mikiyasu Sakanaka; Takane Katayama

  The ISME Journal, 01 Sep. 2022

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• A simple method that enhances minority species detection in the microbiota: 16S metagenome-DRIP (Deeper Resolution using an Inhibitory Primer)

  Aruto Nakajima; Keisuke Yoshida; Aina Gotoh; Toshihiko Katoh; Miriam N. Ojima; Mikiyasu Sakanaka; Jin-Zhong Xiao; Toshitaka Odamaki; Takane Katayama

  Microbiome Research Reports, 30 May 2022

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• Diversification of a Fucosyllactose Transporter within the Genus Bifidobacterium

  Miriam N. Ojima; Yuya Asao; Aruto Nakajima; Toshihiko Katoh; Motomitsu Kitaoka; Aina Gotoh; Junko Hirose; Tadasu Urashima; Satoru Fukiya; Atsushi Yokota; Maher Abou Hachem; Mikiyasu Sakanaka; Takane Katayama

  Applied and Environmental Microbiology, 25 Jan. 2022