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Doi, Hideyuki

Graduate School of Informatics, Department of Informatics Professor

Doi, Hideyuki
list
    Last Updated :2023/09/28

    Basic Information

    Faculty

    • Faculty of Agriculture

    Email Address

    • Email Address

      doi.hideyuki.8jkyoto-u.ac.jp

    Professional Memberships

    • ASLO
    • ECOLOGICAL SOCIETY OF AMERICA
    • The eDNA Society
    • Ecology and Civil Engineering Society
    • THE JAPANESE SOCIETY OF LIMNOLOGY
    • THE ECOLOGICAL SOCIETY OF JAPAN

    Academic Degree

    • 25 Mar. 2005
      東北大学博士(生命科学)
    • 25 Mar. 2002
      東北大学修士(理学)

    Academic Resume (Undergraduate School/Majors)

    • 大阪府立大学, 総合科学部総合科学科, 卒業

    Research History

    • From Oct. 2022, To Present
      Kyoto University, Graduate School of Informatics
    • From Apr. 2021, To Sep. 2022
      University of Hyogo, 大学院情報科学研究科
    • From Apr. 2015, To Mar. 2021
      University of Hyogo, 大学院シミュレーション学研究科
    • From Mar. 2011, To Apr. 2015
      Hiroshima University, サステナブル・ディベロップメント実践研究センター
    • From Aug. 2008, To Feb. 2011
      Carl-von-Ossietzky University Oldenburg, JSPS research fellow for abroad
    • From Apr. 2005, To Jul. 2008
      Ehime University, 農学部, JSPS fellow (PD)
    • From Jun. 2006, To May 2007
      University of Washington, Visiting scholar

    ID,URL

    researchmap URL

    list
      Last Updated :2023/09/28

      Research

      Research Interests

      • Ecology
      • Climate change
      • Food web
      • 環境DNA

      Research Areas

      • Life sciences, Ecology and environmental science
      • Life sciences, Biodiversity and systematics

      Papers

      • Sedimentary DNA can reveal the past population dynamics of a pelagic copepod
        Kai Nakane; Xin Liu; Hideyuki Doi; Gael Dur; Michinobu Kuwae; Syuhei Ban; Narumi Tsugeki
        FRESHWATER BIOLOGY, Apr. 2023
      • The eDNA Society International Meeting 2023, “moving from knowledge into practice”
        Hiroki Yamanaka; Hideyuki Doi; Hitoshi Araki; Kimiko Uchii; Toshifumi Minamoto
        Environmental DNA, 14 Aug. 2023
      • Species traits and ecosystem characteristics affect species detection by eDNA metabarcoding in lake fish communities
        Hideyuki Doi; Shunsuke Matsuoka; Shin‐ichiro S. Matsuzaki; Mariko Nagano; Hirotoshi Sato; Hiroki Yamanaka; Saeko Matsuhashi; Satoshi Yamamoto; Toshifumi Minamoto; Hitoshi Araki; Kousuke Ikeda; Atsuko Kato; Kouichi Kumei; Nobutaka Maki; Takashi Mitsuzuka; Teruhiko Takahara; Kimihito Toki; Natsuki Ueda; Takeshi Watanabe; Kanji Yamazoe; Masaki Miya
        Freshwater Biology, Jun. 2023
      • Reconstruction of 100-year dynamics in Daphnia spawning activity revealed by sedimentary DNA
        Narumi Tsugeki; Kai Nakane; Hideyuki Doi; Natsuki Ochi; Michinobu Kuwae
        Scientific Reports, Feb. 2022, Peer-reviewed
      • Comparing environmental DNA with whole pond survey to estimate the total biomass of fish species in ponds
        Rio Souma; Izumi Katano; Hideyuki Doi; Teruhiko Takahara; Toshifumi Minamoto
        Freshwater Biology, 23 Feb. 2023
      • Spatiotemporal variability in a copepod community associated with fluctuations in salinity and trophic state in an artificial brackish reservoir at Saemangeum, South Korea
        Yusuke Oda; Hideyuki Doi; Sho Nakano; Jong-Mo Suh; Hye-Ji Oh; Mei-Yan Jin; Yong-Jae Kim; Masaki Sakamoto; Kwang-Hyeon Chang
        PLOS ONE, 20 Dec. 2018, Peer-reviewed
      • Estimating native and invasive crayfish distributions in relation to culvert barriers with environmental DNA
        Kousuke Ikeda; Hideyuki Doi; Shigeharu Terui; Atsuko Kato; Takashi Mitsuzuka; Tadashi Kawai; Junjiro N. Negishi
        Freshwater Science, 01 Sep. 2019, Peer-reviewed
      • Using environmental DNA to detect an endangered crayfish Cambaroides japonicus in streams
        Kousuke Ikeda; Hideyuki Doi; Kazunori Tanaka; Tadashi Kawai; Junjiro N. Negishi
        Conservation Genetics Resources, Sep. 2016, Peer-reviewed
      • Effective environmental DNA collection for an endangered catfish species: testing for habitat and daily periodicity
        Teruhiko Takahara; Hideyuki Doi; Toshihiro Kosuge; Nanae Nomura; Nobutaka Maki; Toshifumi Minamoto; Katsutoshi Watanabe
        Ichthyological Research, 24 Dec. 2022
      • Diurnal detection of environmental DNA of the semi-aquatic water shrew Chimarrogale platycephala using 25-h water sampling in streams
        Nao Shiozuka; Izumi Katano; Hideyuki Doi; Masatoshi Nakamura; Tomoyasu Shirako; Hidetaka Ichiyanagi
        Landscape and Ecological Engineering, 20 Oct. 2022
      • Terrigenous subsidies in lakes support zooplankton production mainly via a green food chain and not the brown food chain
        Fumiya Hirama; Jotaro Urabe; Hideyuki Doi; Takehiro Kazama; Takumi Noguchi; Tyler H. Tappenbeck; Izumi Katano; Masato Yamamichi; Takehito Yoshida; James J. Elser
        Frontiers in Ecology and Evolution, 25 Aug. 2022
      • Environmental DNA methods for detecting two invasive alien species (American bullfrog and red swamp crayfish) in Japanese ponds
        Shigeki Ogata; Hideyuki Doi; Takeshi Igawa; Shohei Komaki; Teruhiko Takahara
        Ecological Research, 05 Jul. 2022
      • Influence of DNA extraction kits on freshwater fungal DNA metabarcoding
        Shunsuke Matsuoka; Yoriko Sugiyama; Mariko Nagano; Hideyuki Doi
        PeerJ, 27 May 2022
      • Development of primer–probe sets for environmental DNA-based monitoring of pond smelt Hypomesus nipponensis and Japanese icefish Salangichthys microdon
        Teruhiko Takahara; Katsuya Fukui; Daisuke Hiramatsu; Hideyuki Doi; Masato Fujii; Toshifumi Minamoto
        Landscape and Ecological Engineering, 19 Apr. 2022
      • Effects of sediment replenishment on riverbed environments and macroinvertebrate assemblages downstream of a dam
        Izumi Katano; Junjiro N. Negishi; Tomoko Minagawa; Hideyuki Doi; Yôichi Kawaguchi; Yuichi Kayaba
        Scientific Reports, Dec. 2021
      • Simultaneous absolute quantification and sequencing of fish environmental DNA in a mesocosm by quantitative sequencing technique
        Tatsuhiko Hoshino; Ryohei Nakao; Hideyuki Doi; Toshifumi Minamoto
        Scientific Reports, Dec. 2021
      • Evaluation of seasonal dynamics of fungal DNA assemblages in a flow-regulated stream in a restored forest using eDNA metabarcoding.
        Shunsuke Matsuoka; Yoriko Sugiyama; Yoshito Shimono; Masayuki Ushio; Hideyuki Doi
        Environmental microbiology, 13 Jul. 2021
      • Causal analysis of the temperature impact on deep-sea biodiversity.
        Hideyuki Doi; Moriaki Yasuhara; Masayuki Ushio
        Biology letters, Jul. 2021
      • Utility of environmental DNA analysis for effective monitoring of invasive fish species in reservoirs
        Toshiaki Jo; Saki Ikeda; Arisa Fukuoka; Takashi Inagawa; Jiro Okitsu; Izumi Katano; Hideyuki Doi; Katsuki Nakai; Hidetaka Ichiyanagi; Toshifumi Minamoto
        Ecosphere, Jun. 2021, Peer-reviewed
      • Compilation of real‐time PCR conditions toward the standardization of environmental DNA methods
        Hideyuki Doi; Toshifumi Minamoto; Teruhiko Takahara; Satsuki Tsuji; Kimiko Uchii; Satoshi Yamamoto; Izumi Katano; Hiroki Yamanaka
        Ecological Research, May 2021, Peer-reviewed
      • Estimation of biodiversity metrics by environmental DNA metabarcoding compared with visual and capture surveys of river fish communities
        Hideyuki Doi; Ryutei Inui; Shunsuke Matsuoka; Yoshihisa Akamatsu; Masuji Goto; Takanori Kono
        Freshwater Biology, 13 Apr. 2021
      • Effects of sediment replenishment on riverbed environments and macroinvertebrate assemblages downstream of a dam.
        Izumi Katano; Junjiro N Negishi; Tomoko Minagawa; Hideyuki Doi; Yôichi Kawaguchi; Yuichi Kayaba
        Scientific reports, 08 Apr. 2021
      • A unified framework for herbivore-to-producer biomass ratio reveals the relative influence of four ecological factors.
        Takehiro Kazama; Jotaro Urabe; Masato Yamamichi; Kotaro Tokita; Xuwang Yin; Izumi Katano; Hideyuki Doi; Takehito Yoshida; Nelson G Hairston Jr
        Communications biology, 08 Jan. 2021
      • Sedimentary DNA tracks decadal-centennial changes in fish abundance
        Michinobu Kuwae; Hiromichi Tamai; Hideyuki Doi; Masayuki K. Sakata; Toshifumi Minamoto; Yoshiaki Suzuki
        Communications Biology, Dec. 2020, Peer-reviewed
      • Complementary molecular methods reveal comprehensive phylogenetic diversity integrating inconspicuous lineages of early-diverged wood-decaying mushrooms
        Takashi Shirouzu; Shunsuke Matsuoka; Hideyuki Doi; Nobuaki Nagata; Masayuki Ushio; Kentaro Hosaka
        Scientific Reports, Dec. 2020, Peer-reviewed
      • Exploring a legendary giant squid: an environmental DNA approach
        Toshifumi Wada; Hideyuki Doi; Daisuke Togaki; Ryotaro Kaida; Mariko Nagano; Izumi Katano; Masami Suzuki; Tetsuya Ohtani; Hiromune Mitsuhashi
        Marine Biology, Nov. 2020, Peer-reviewed
      • Global diversity of microbial communities in marine sediment
        Tatsuhiko Hoshino; Hideyuki Doi; Go-Ichiro Uramoto; Lars Wörmer; Rishi R. Adhikari; Nan Xiao; Yuki Morono; Steven D’Hondt; Kai-Uwe Hinrichs; Fumio Inagaki
        Proceedings of the National Academy of Sciences, 19 Oct. 2020, Peer-reviewed
      • Broad-scale detection of environmental DNA for an invasive macrophyte and the relationship between DNA concentration and coverage in rivers
        Hideyuki Doi; Yoshihisa Akamatsu; Masuji Goto; Ryutei Inui; Takashi Komuro; Mariko Nagano; Toshifumi Minamoto
        Biological Invasions, 12 Oct. 2020, Peer-reviewed
      • Environmental DNA metabarcoding for biodiversity monitoring of a highly diverse tropical fish community in a coral reef lagoon: Estimation of species richness and detection of habitat segregation
        Shin‐ichiro Oka; Hideyuki Doi; Kei Miyamoto; Nozomi Hanahara; Tetsuya Sado; Masaki Miya
        Environmental DNA, 28 Aug. 2020, Peer-reviewed
      • Suppression of environmental DNA degradation in water samples associated with different storage temperature and period using benzalkonium chloride
        Teruhiko Takahara; Junya Taguchi; Satoshi Yamagishi; Hideyuki Doi; Shigeki Ogata; Hiroki Yamanaka; Toshifumi Minamoto
        Limnology and Oceanography: Methods, 13 Aug. 2020, Peer-reviewed
      • An illustrated manual for environmental DNA research: Water sampling guidelines and experimental protocols
        Toshifumi Minamoto; Masaki Miya; Tetsuya Sado; Satoquo Seino; Hideyuki Doi; Michio Kondoh; Keigo Nakamura; Teruhiko Takahara; Satoshi Yamamoto; Hiroki Yamanaka; Hitoshi Araki; Wataru Iwasaki; Akihide Kasai; Reiji Masuda; Kimiko Uchii
        Environmental DNA, 10 Aug. 2020, Peer-reviewed
      • Illumina iSeq 100 and MiSeq exhibit similar performance in freshwater fish environmental DNA metabarcoding
        Ryohei Nakao; Ryutei Inui; Yoshihisa Akamatsu; Masuji Goto; Hideyuki Doi; Shunsuke Matsuoka
        04 Aug. 2020
      • Ecological and evolutionary factors of intraspecific variation in inducible defenses: Insights gained from Daphnia experiments
        Mariko Nagano; Hideyuki Doi
        Ecology and Evolution, 03 Aug. 2020, Peer-reviewed
      • Idea paper: Community‐interaction analyses contribute to improving the performance of microbial fuel cells
        Hideyuki Doi
        Ecological Research, 08 Jul. 2020, Peer-reviewed
      • Effects of sampling seasons and locations on fish environmental DNA metabarcoding in dam reservoirs
        Kana Hayami; Masayuki K. Sakata; Takashi Inagawa; Jiro Okitsu; Izumi Katano; Hideyuki Doi; Katsuki Nakai; Hidetaka Ichiyanagi; Ryo O. Gotoh; Masaki Miya; Hirotoshi Sato; Hiroki Yamanaka; Toshifumi Minamoto
        Ecology and Evolution, 06 Jun. 2020, Peer-reviewed
      • Taxonomic, functional, and phylogenetic diversity of fungi in a forest-tundra ecotone in Québec
        Shunsuke Matsuoka; Hideyuki Doi; Shota Masumoto; Ryo Kitagawa; Keita Nishizawa; Kaho Tanaka; Motohiro Hasegawa; Satoru Hobara; Takashi Osono; Akira S. Mori; Masaki Uchida
        Polar Science, 2020
      • Environmental DNA detection and quantification of invasive red-eared sliders, Trachemy scripta elegans, in ponds and the influence of water quality
        Aozora Kakuda; Hideyuki Doi; Rio Souma; Mariko Nagano; Toshifumi Minamoto; Izumi Katano
        PeerJ, 06 Dec. 2019, Peer-reviewed
      • Evaluation of detection probabilities at the water-filtering and initial PCR steps in environmental DNA metabarcoding using a multispecies site occupancy model
        Hideyuki Doi; Keiichi Fukaya; Shin-ichiro Oka; Keiichi Sato; Michio Kondoh; Masaki Miya
        Scientific Reports, Dec. 2019, Peer-reviewed
      • Comparison of inhibition resistance among PCR reagents for detection and quantification of environmental DNA
        Kimiko Uchii; Hideyuki Doi; Teruyuki Okahashi; Izumi Katano; Hiroki Yamanaka; Masayuki K. Sakata; Toshifumi Minamoto
        Environmental DNA, 15 Nov. 2019, Peer-reviewed
      • Biogeographic Patterns of Ectomycorrhizal Fungal Communities Associated With Castanopsis sieboldii Across the Japanese Archipelago
        Shunsuke Matsuoka; Takaya Iwasaki; Yoriko Sugiyama; Eri Kawaguchi; Hideyuki Doi; Takashi Osono
        Frontiers in Microbiology, Nov. 2019, Peer-reviewed
      • Seasonal change in environmental DNA concentration of a submerged aquatic plant species
        MATSUHASHI Saeko; MINAMOTO Toshifumi; DOI Hideyuki
        Freshwater Science, Sep. 2019, Peer-reviewed
      • The detection of aquatic macroorganisms using environmental DNA analysis—A review of methods for collection, extraction, and detection
        Satsuki Tsuji; Teruhiko Takahara; Hideyuki Doi; Naoki Shibata; Hiroki Yamanaka
        Environmental DNA, 20 Jul. 2019, Peer-reviewed
      • Spatial structure of fungal DNA assemblages revealed with eDNA metabarcoding in a forest river network in western Japan
        Shunsuke Matsuoka; Yoriko Sugiyama; Hirotoshi Sato; Izumi Katano; Ken Harada; Hideyuki Doi
        Metabarcoding and Metagenomics, 10 Jul. 2019, Peer-reviewed
      • Evaluation of biodiversity metrics through environmental DNA metabarcoding outperforms visual and capturing surveys
        Hideyuki Doi; Ryutei Inui; Shunsuke Matsuoka; Yoshihisa Akamatsu; Masuji Goto; Takanori Kono
        bioRχiv, May 2019
      • Using environmental DNA to estimate the seasonal distribution and habitat preferences of a Japanese basket clam in Lake Shinji, Japan
        TAKAHARA Teruhiko; IKEBUCHI Takashi; DOI Hideyuki; MINAMOTO Toshifumi
        Estuarine, Coastal and Shelf Science, Mar. 2019, Peer-reviewed
      • Trophic niche breadth of pond zooplankton species using stable isotope analysis and the relationship with the abiotic and biotic factors
        Hideyuki Doi; Kwang-Hyeon Chang; Shin-ichi Nakano
        Royal Society Open Science, 31 Jan. 2019, Peer-reviewed
      • Environmental DNA metabarcoding for fish community analysis in backwater lakes: A comparison of capture methods
        Kazuya Fujii; Arga Chandrashekar Anil; Hideyuki Doi; Shunsuke Matsuoka; Mariko Nagano; Hirotoshi Sato; Hiroki Yamanaka
        PLOS ONE, 31 Jan. 2019, Peer-reviewed
      • A shady phytoplankton paradox: when phytoplankton increases under low light
        Masato Yamamichi; Takehiro Kazama; Kotaro Tokita; Izumi Katano; Hideyuki Doi; Takehito Yoshida; Nelson G. Hairston, Jr; Jotaro Urabe
        Proceedings of the Royal Society B: Biological Sciences, 11 Jul. 2018, Peer-reviewed
      • Global dataset for carbon and nitrogen stable isotope ratios of lotic periphyton
        Naoto F. Ishikawa; Hideyuki Doi; Jacques C. Finlay
        Ecological Research, 28 May 2018, Peer-reviewed
      • Degree of high phenotypic plasticity in wild populations of Daphnia in early spring
        Mariko Nagano; Hideyuki Doi
        Journal of Limnology, 21 Mar. 2018, Peer-reviewed
      • An analytical framework for estimating aquatic species density from environmental DNA
        Thierry Chambert; David S. Pilliod; Caren S. Goldberg; Hideyuki Doi; Teruhiko Takahara
        Ecology and Evolution, 01 Mar. 2018, Peer-reviewed
      • DEVELOPMENT OF UAV FOR WATER SAMPLING AND ITS PRACTICAL USE IN DAM RESERVOIR AND RIVER
        AKAMATSU Yoshihisa; WATANABE Yutaka; HIRASAKA Naoyuki; DOI Hideyuki; GOTO Masuji; KOMURO Takashi; INUI Ryutei; KONO Takanori
        Advances in River Engineering, 2018
      • Usefulness and limitations of sample pooling for environmental DNA metabarcoding of freshwater fish communities
        Hirotoshi Sato; Yuki Sogo; Hideyuki Doi; Hiroki Yamanaka
        Scientific Reports, Dec. 2017, Peer-reviewed
      • Correction to ‘Starvation effects on nitrogen and carbon stable isotopes of animals: an insight from meta-analysis of fasting experiments’
        Hideyuki Doi; Fumikazu Akamatsu; Angélica L. González
        Royal Society Open Science, Nov. 2017, Peer-reviewed
      • Water sampling for environmental DNA surveys by using an unmanned aerial vehicle
        Hideyuki Doi; Yoshihisa Akamatsu; Yutaka Watanabe; Masuji Goto; Ryutei Inui; Izumi Katano; Mariko Nagano; Teruhiko Takahara; Toshifumi Minamoto
        Limnology and Oceanography: Methods, 01 Nov. 2017, Peer-reviewed
      • Distinct seasonal migration patterns of Japanese native and non-native genotypes of common carp estimated by environmental DNA
        Kimiko Uchii; Hideyuki Doi; Hiroki Yamanaka; Toshifumi Minamoto
        ECOLOGY AND EVOLUTION, Oct. 2017, Peer-reviewed
      • A macroecological perspective for phenological research under climate change
        Hideyuki Doi; Oscar Gordo; Terutaka Mori; Mayumi T. Kubo
        ECOLOGICAL RESEARCH, Sep. 2017, Peer-reviewed
      • Starvation effects on nitrogen and carbon stable isotopes of animals: an insight from meta-analysis of fasting experiments
        Doi, Hideyuki; Akamatsu, Fumikazu; Gonzalez, Angelica L.
        Royal Society Open Science, Aug. 2017, Peer-reviewed
      • Detection of an endangered aquatic heteropteran using environmental DNA in a wetland ecosystem
        Hideyuki Doi; Izumi Katano; Yusuke Sakata; Rio Souma; Toshihiro Kosuge; Mariko Nagano; Kousuke Ikeda; Koki Yano; Koji Tojo
        ROYAL SOCIETY OPEN SCIENCE, Jul. 2017, Peer-reviewed
      • Environmental DNA method for estimating salamander distribution in headwater streams, and a comparison of water sampling methods
        Izumi Katano; Ken Harada; Hideyuki Doi; Rio Souma; Toshifumi Minamoto
        PLOS ONE, May 2017, Peer-reviewed
      • Nuclear internal transcribed spacer-1 as a sensitive genetic marker for environmental DNA studies in common carp Cyprinus carpio
        Toshifumi Minamoto; Kimiko Uchii; Teruhiko Takahara; Takumi Kitayoshi; Satsuki Tsuji; Hiroki Yamanaka; Hideyuki Doi
        MOLECULAR ECOLOGY RESOURCES, Mar. 2017, Peer-reviewed
      • Isopropanol precipitation method for collecting fish environmental DNA
        Hideyuki Doi; Kimiko Uchii; Saeko Matsuhashi; Teruhiko Takahara; Hiroki Yamanaka; Toshifumi Minamoto
        LIMNOLOGY AND OCEANOGRAPHY-METHODS, Feb. 2017, Peer-reviewed
      • 菌類メタバーコーディングによる河川水中の菌類相評価
        松岡 俊将; 佐藤 博俊; 原田 憲; 片野 泉; 土居 秀幸
        日本菌学会大会講演要旨集, 2017
      • Distribution and drift dispersal dynamics of a caddisfly grazer in response to resource abundance and its ontogeny
        Izumi Katano; Hiromune Mitsuhashi; Hideyuki Doi; Yu Isobe; Tadashi Oishi
        ROYAL SOCIETY OPEN SCIENCE, Jan. 2017, Peer-reviewed
      • Environmental DNA analysis for estimating the abundance and biomass of stream fish
        Hideyuki Doi; Ryutei Inui; Yoshihisa Akamatsu; Kazuki Kanno; Hiroki Yamanaka; Teruhiko Takahara; Toshifumi Minamoto
        FRESHWATER BIOLOGY, Jan. 2017, Peer-reviewed
      • Use of a Filter Cartridge for Filtration of Water Samples and Extraction of Environmental DNA
        Masaki Miya; Toshifumi Minamoto; Hiroki Yamanaka; Shin-ichiro Oka; Keiichi Sato; Satoshi Yamamoto; Tetsuya Sado; Hideyuki Doi
        JOVE-JOURNAL OF VISUALIZED EXPERIMENTS, Nov. 2016, Peer-reviewed, Invited
      • Global patterns of conservation research importance in different countries of the world
        Hideyuki Doi; Teruhiko Takahara
        PEERJ, Jul. 2016, Peer-reviewed
      • Use of environmental DNA to survey the distribution of an invasive submerged plant in ponds
        Ayaka Fujiwara; Saeko Matsuhashi; Hideyuki Doi; Satoshi Yamamoto; Toshifumi Minamoto
        FRESHWATER SCIENCE, Jun. 2016, Peer-reviewed
      • Evaluation of the Environmental DNA Method for Estimating Distribution and Biomass of Submerged Aquatic Plants
        Saeko Matsuhashi; Hideyuki Doi; Ayaka Fujiwara; Sonoko Watanabe; Toshifumi Minamoto
        PLOS ONE, Jun. 2016, Peer-reviewed
      • A novel environmental DNA approach to quantify the cryptic invasion of non-native genotypes
        Kimiko Uchii; Hideyuki Doi; Toshifumi Minamoto
        MOLECULAR ECOLOGY RESOURCES, Mar. 2016, Peer-reviewed
      • A cross-system meta-analysis reveals coupled predation effects on prey biomass and diversity
        Izumi Katano; Hideyuki Doi; Britas Klemens Eriksson; Helmut Hillebrand
        OIKOS, Nov. 2015, Peer-reviewed
      • Droplet Digital Polymerase Chain Reaction (PCR) Outperforms Real-Time PCR in the Detection of Environmental DNA from an Invasive Fish Species
        Hideyuki Doi; Teruhiko Takahara; Toshifumi Minamoto; Saeko Matsuhashi; Kimiko Uchii; Hiroki Yamanaka
        ENVIRONMENTAL SCIENCE & TECHNOLOGY, May 2015, Peer-reviewed
      • Use of Droplet Digital PCR for Estimation of Fish Abundance and Biomass in Environmental DNA Surveys
        Hideyuki Doi; Kimiko Uchii; Teruhiko Takahara; Saeko Matsuhashi; Hiroki Yamanaka; Toshifumi Minamoto
        PLOS ONE, Mar. 2015, Peer-reviewed
      • Effects of sample processing on the detection rate of environmental DNA from the Common Carp (Cyprinus carpio)
        Teruhiko Takahara; Toshifumi Minamoto; Hideyuki Doi
        BIOLOGICAL CONSERVATION, Mar. 2015, Peer-reviewed
      • Radiocesium accumulation in the anuran frog, Rana tagoi tagoi, in forest ecosystems after the Fukushima Nuclear Power Plant accident
        Takahara, Teruhiko; Endo, Satoru; Takada, Momo; Oba, Yurika; Nursal, Wim Ikbal; Igawa, Takeshi; Doi, Hideyuki; Yamada, Toshihiro; Okuda, Toshinori
        Environmental Pollution, 2015, Peer-reviewed
      • Effects of daily temperature fluctuation on the survival of carp infected with Cyprinid herpesvirus 3
        Teruhiko Takahara; Mie N. Honjo; Kimiko Uchii; Toshifumi Minamoto; Hideyuki Doi; Takafumi Ito; Zen'ichiro Kawabata
        AQUACULTURE, Sep. 2014, Peer-reviewed
      • Stream grazers determine their crawling direction on the basis of chemical and particulate microalgal cues
        Izumi Katano; Hideyuki Doi
        PEERJ, Aug. 2014, Peer-reviewed
      • Differences between domesticated Eurasian and Japanese indigenous strains of the common carp (Cyprinus carpio) in cortisol release following acute stress
        Teruhiko Takahara; Toshifumi Minamoto; Hideyuki Doi; Takafumi Ito; Zen'ichiro Kawabata
        ICHTHYOLOGICAL RESEARCH, Apr. 2014, Peer-reviewed
      • Scientific Activity Is a Better Predictor of Nobel Award Chances than Dietary Habits and Economic Factors
        Hideyuki Doi; Alexandre Heeren; Pierre Maurage
        PLOS ONE, Mar. 2014, Peer-reviewed
      • Feeding behavior of the copepod Temora turbinata: Clearance rate and prey preference on the diatom and microbial food web components in coastal area
        Kwang-Hyeon Chang; Hideyuki Doi; Yuichiro Nishibe; Gui-Sook Nam; Shin-Ichi Nakano
        Journal of Ecology and Environment, 2014
      • Comment: “Four color issue” in ecology
        Doi H
        Japanese Journal of Ecology, 2014, Peer-reviewed
      • Comment: Food web theories and mass extinction
        Doi H
        Japanese Journal of Ecology, 2014, Peer-reviewed
      • Isotopic evidence for the spatial heterogeneity of the planktonic food webs in the transition zone between river and lake ecosystems
        Hideyuki Doi; Elena I. Zuykova; Shuichi Shikano; Eisuke Kikuchi; Hiroshi Ota; Natalia I. Yurlova; Elena Yadrenkina
        PEERJ, Dec. 2013, Peer-reviewed
      • The "four-color issue" in ecology for considering ecosystem boundaries
        H. Doi
        Web Ecology, 28 Oct. 2013, Peer-reviewed
      • Effects of biodiversity, habitat structure, and water quality on recreational use of rivers
        Hideyuki Doi; Izumi Katano; Junjiro N. Negishi; Seiji Sanada; Yuichi Kayaba
        Ecosphere, 23 Aug. 2013, Peer-reviewed
      • Lack of Congruence in Species Diversity Indices and Community Structures of Planktonic Groups Based on Local Environmental Factors
        Hideyuki Doi; Kwang-Hyeon Chang; Yuichiro Nishibe; Hiroyuki Imai; Shin-ichi Nakano
        PLOS ONE, Jul. 2013, Peer-reviewed
      • The discovery of species-abundance distribution in an ecological community
        Hideyuki Doi; Terutaka Mori
        OIKOS, Feb. 2013, Peer-reviewed
      • Using Environmental DNA to Estimate the Distribution of an Invasive Fish Species in Ponds
        Teruhiko Takahara; Toshifumi Minamoto; Hideyuki Doi
        PLOS ONE, Feb. 2013, Peer-reviewed
      • Different chemical cues originating from a shared predator induce common defense responses in two prey species
        Teruhiko Takahara; Hideyuki Doi; Yukihiro Kohmatsu; Ryohei Yamaoka
        ANIMAL COGNITION, Jan. 2013, Peer-reviewed
      • Global meta-analysis for controlling factors on carbon stable isotope ratios of lotic periphyton
        Naoto F. Ishikawa; Hideyuki Doi; Jacques C. Finlay
        OECOLOGIA, Oct. 2012, Peer-reviewed
      • Response of the Morus bombycis growing season to temperature and its latitudinal pattern in Japan
        Hideyuki Doi
        INTERNATIONAL JOURNAL OF BIOMETEOROLOGY, Sep. 2012, Peer-reviewed
      • Inducible defense behavior of an anuran tadpole: cue-detection range and cue types used against predator
        Teruhiko Takahara; Yukihiro Kohmatsu; Atsushi Maruyama; Hideyuki Doi; Hiroki Yamanaka; Ryohei Yamaoka
        BEHAVIORAL ECOLOGY, Jul. 2012, Peer-reviewed
      • Shorter Food Chain Length in Ancient Lakes: Evidence from a Global Synthesis
        Hideyuki Doi; M. Jake Vander Zanden; Helmut Hillebrand
        PLOS ONE, Jun. 2012, Peer-reviewed
      • Resource productivity and availability impacts for food-chain length
        Hideyuki Doi
        ECOLOGICAL RESEARCH, May 2012, Peer-reviewed
      • Spring phenology delays in an insular subtropical songbird: is response to climate change constrained by population size?
        Oscar Gordo; Hideyuki Doi
        JOURNAL OF ORNITHOLOGY, Apr. 2012, Peer-reviewed
      • A perspective on match/mismatch of phenology in community contexts
        Takefumi Nakazawa; Hideyuki Doi
        OIKOS, Apr. 2012, Peer-reviewed
      • Estimation of Fish Biomass Using Environmental DNA
        Teruhiko Takahara; Toshifumi Minamoto; Hiroki Yamanaka; Hideyuki Doi; Zen'ichiro Kawabata
        PLOS ONE, Apr. 2012, Peer-reviewed
      • Trophic Position and Metabolic Rate Predict the Long-Term Decay Process of Radioactive Cesium in Fish: A Meta-Analysis
        Hideyuki Doi; Teruhiko Takahara; Kazuya Tanaka
        PLOS ONE, Jan. 2012, Peer-reviewed
      • Drivers of population variability in phenological responses to climate change in Japanese birds
        Oscar Gordo; Hideyuki Doi
        CLIMATE RESEARCH, 2012, Peer-reviewed
      • Grazing on Microcystis (Cyanophyceae) by testate amoebae with special reference to cyanobacterial abundance and physiological state
        Seiko Mizuta; Hiroyuki Imai; Kwang-Hyeon Chang; Hideyuki Doi; Yuichiro Nishibe; Shin-ichi Nakano
        LIMNOLOGY, Dec. 2011, Peer-reviewed
      • N-15/N-14 ratios of amino acids as a tool for studying terrestrial food webs: a case study of terrestrial insects (bees, wasps, and hornets)
        Yoshito Chikaraishi; Nanako O. Ogawa; Hideyuki Doi; Naohiko Ohkouchi
        ECOLOGICAL RESEARCH, Jul. 2011, Peer-reviewed
      • Host-parasite interactions and global climate oscillations
        Hideyuki Doi; Natalia I. Yurlova
        PARASITOLOGY, Jul. 2011, Peer-reviewed
      • Host-parasite interactions and global climate oscillations
        Hideyuki Doi; Natalia I. Yurlova
        PARASITOLOGY, Jul. 2011, Peer-reviewed
      • Consequent Effects of Parasitism on Population Dynamics, Food Webs, and Human Health Under Climate Change
        Hideyuki Doi; Natalia I. Yurlova
        AMBIO, May 2011, Peer-reviewed
      • Response of the plankton community to herbicide application (triazine herbicide, simetryn) in a eutrophicated system: short-term exposure experiment using microcosms
        Kwang-Hyeon Chang; Masaki Sakamoto; Jin-Yong Ha; Yuichi Miyabara; Shin-ichi Nakano; Hideyuki Doi; Takayuki Hanazato
        LIMNOLOGY, Apr. 2011, Peer-reviewed
      • Seasonally tracking vertical and horizontal distribution of unionid mussels (Pronodularia japanensis): implications for agricultural drainage management
        Junjiro N. Negishi; Hideyuki Doi; Izumi Katano; Yuichi Kayaba
        AQUATIC CONSERVATION-MARINE AND FRESHWATER ECOSYSTEMS, Jan. 2011, Peer-reviewed
      • Similarity indices, ordination, and community analysis tests using the software R
        Doi H; Okamura H
        Japanese Journal of Ecology, 2011, Peer-reviewed
      • Nitrogen and carbon isotope fractionations of zooplankton consumers in ponds: potential effects of seston C : N stoichiometry
        Hideyuki Doi; Kwang-Hyeon Chang; Shin-ichi Nakano
        MARINE AND FRESHWATER RESEARCH, 2011, Peer-reviewed
      • Trophic niche breadth variability differs among three Neocalanus species in the subarctic Pacific Ocean
        Hideyuki Doi; Toru Kobari; Kayoko Fukumori; Yuichiro Nishibe; Shin-ichi Nakano
        JOURNAL OF PLANKTON RESEARCH, Dec. 2010, Peer-reviewed
      • Stable isotopes indicate individual level trophic diversity in the freshwater gastropod Lymnaea stagnalis
        Hideyuki Doi; Natalia I. Yurlova; Eisuke Kikuchi; Shuichi Shikano; Elena N. Yadrenkina; Svetlana N. Vodyanitskaya; Elena I. Zuykova
        JOURNAL OF MOLLUSCAN STUDIES, Nov. 2010, Peer-reviewed
      • Differences in nitrogen and carbon stable isotopes between planktonic and benthic microalgae
        Hideyuki Doi; Eisuke Kikuchi; Shuichi Shikano; Shigeto Takagi
        LIMNOLOGY, Aug. 2010, Peer-reviewed
      • GLUTAMATE EXOCRINE DYNAMICS AUGMENTED BY PLASMA GLUTAMINE AND THE DISTRIBUTION OF AMINO ACID TRANSPORTERS OF THE RAT PANCREAS
        D. Fukushima; H. Doi; K. Fukushima; K. Katsura; N. Ogawa; S. Sekiguchi; K. Fujimori; A. Sato; S. Satomi; K. Ishida; K. Fukushima
        JOURNAL OF PHYSIOLOGY AND PHARMACOLOGY, Jun. 2010, Peer-reviewed
      • Integrating elements and energy through the metabolic dependencies of gross growth efficiency and the threshold elemental ratio
        Hideyuki Doi; Mehdi Cherif; Tsubasa Iwabuchi; Izumi Katano; James C. Stegen; Maren Striebel
        OIKOS, May 2010, Peer-reviewed
      • Shoreline bank construction modifies benthic-pelagic coupling of food webs
        Hideyuki Doi; Kwang-Hyeon Chang; Takamitsu Ando; Hiroyuki Imai; Shin-ichi Nakano
        ECOLOGICAL ENGINEERING, Apr. 2010, Peer-reviewed
      • ESTIMATING ISOTOPE FRACTIONATION BETWEEN CERCARIAE AND HOST SNAIL WITH THE USE OF ISOTOPE MEASUREMENT DESIGNED FOR VERY SMALL ORGANISMS
        Hideyuki Doi; Natalia I. Yurlova; Svetlana N. Vodyanitskaya; Gen Kanaya; Shuichi Shikano; Eisuke Kikuchi
        JOURNAL OF PARASITOLOGY, Apr. 2010, Peer-reviewed
      • Macro-scale investigation of climate change effect on plant phenological timings using the phenological dataset of japan metrological agency
        Doi H; Takahashi M
        Japanese Journal of Ecology, 2010, Peer-reviewed
      • Genetic diversity increases regional variation in phenological dates in response to climate change
        Hideyuki Doi; Mayumi Takahashi; Izumi Katano
        GLOBAL CHANGE BIOLOGY, Jan. 2010, Peer-reviewed
      • Dispersal, connectivity, and local conditions determine zooplankton community composition in artificially connected ponds
        Hideyuki Doi; Kwang-Hyeon Chang; Shin-ichi Nakano
        AQUATIC BIOLOGY, 2010, Peer-reviewed
      • Feeding habits of omnivorous Asplanchna: comparison of diet composition among Asplanchna herricki, A. priodonta and A. girodi in pond ecosystems
        Kwang-Hyeon Chang; Hideyuki Doi; Yuichiro Nishibe; Shin-ichi Nakano
        JOURNAL OF LIMNOLOGY, 2010, Peer-reviewed
      • 土砂還元によるダム下流域の修復効果検証のための指標種の抽出
        片野泉; 根岸淳二郎; 皆川朋子; 土居秀幸; 萱場祐一
        河川技術論文集, 2010, Peer-reviewed
      • Upstream resource abundance determines the food searching behavior of a stream grazer: Effect of microalgal cues
        Izumi Katano; Hideyuki Doi; Tadashi Oishi
        LIMNOLOGY AND OCEANOGRAPHY, Jul. 2009, Peer-reviewed
      • Conservation and research in extreme environments
        Hideyuki Doi; Eisuke Kikuchi
        FRONTIERS IN ECOLOGY AND THE ENVIRONMENT, Jun. 2009, Peer-reviewed
      • Macroalgae and seagrass contribution to gastropods in sub-tropical and temperate tidal flats
        Hideyuki Doi; Masatoshi Matsumasa; Mamoru Fujikawa; Keiich Kanou; Takao Suzuki; Eisuke Kikuchi
        JOURNAL OF THE MARINE BIOLOGICAL ASSOCIATION OF THE UNITED KINGDOM, Mar. 2009, Peer-reviewed
      • Stable isotope characterization of fluids from the Lake Chany complex, western Siberia, Russian Federation
        C. Mizota; H. Doi; E. Kikuchi; S. Shikano; T. Kakegawa; N. Yurlova; A. K. Yurlov
        APPLIED GEOCHEMISTRY, Feb. 2009, Peer-reviewed
      • Superiority of Fresh Islets Compared With Cultured Islets
        H. Takahashi; M. Goto; N. Ogawa; Y. Saito; K. Fujimori; Y. Kurokawa; H. Doi; S. Satomi
        TRANSPLANTATION PROCEEDINGS, Jan. 2009, Peer-reviewed
      • Spatial patterns of autochthonous and allochthonous resources in aquatic food webs
        Hideyuki Doi
        POPULATION ECOLOGY, Jan. 2009, Peer-reviewed
      • Resource availability and ecosystem size predict food-chain length in pond ecosystems
        Hideyuki Doi; Kwang-Hyeon Chang; Takamitsu Ando; Ippei Ninomiya; Hiroyuki Imai; Shin-ichi Nakano
        OIKOS, Jan. 2009, Peer-reviewed
      • Contribution of organic matter sources to cyprinid fishes in the Chany Lake-Kargat River estuary, western Siberia
        Gen Kanaya; Elena N. Yadrenkina; Elena I. Zuykova; Eisuke Kikuchi; Hideyuki Doi; Shuichi Shikano; Chitoshi Mizota; Natalia I. Yurlova
        MARINE AND FRESHWATER RESEARCH, 2009, Peer-reviewed
      • Spatial and temporal distribution of zooplankton communities of coastal marine waters receiving different human activities (fish and pearl oyster farmings)
        Kwang-Hyeon Chang; Hideyuki Doi; Yuichiro Nishibe; Yumiko Obayashi; Shin-ichi Nakano
        The Open Marine Biology Journal, 2009, Peer-reviewed
      • Photosynthetic property and primary production of phytoplankton in sublittoral sand bank area in the Seto Inland Sea, Japan
        Motomi Genkai-Kato; Miyuki Onishi; Hideyuki Doi; Kentaro Nozaki; Kenji Yoshino; Hitoshi Miyasaka; Koji Omori
        ECOLOGICAL RESEARCH, Nov. 2008, Peer-reviewed
      • Longitudinal changes in zooplankton distribution below a reservoir outfall with reference to river planktivory
        Kwang-Hyeon Chang; Hideyuki Doi; Hiroyuki Imai; Fusako Gunji; Shin-ichi Nakano
        LIMNOLOGY, Aug. 2008, Peer-reviewed
      • Bivalve tissue as a carbon and nitrogen isotope baseline indicator in coastal ecosystems
        Kayoko Fukumori; Misa Oi; Hideyuki Doi; Daisuke Takahashi; Noboru Okuda; Todd W. Miller; Michinobu Kuwae; Hitoshi Miyasaka; Motomi Genkai-Kato; Yoshitsugu Koizumi; Koji Omori; Hidetaka Takeoka
        ESTUARINE COASTAL AND SHELF SCIENCE, Aug. 2008, Peer-reviewed
      • Delayed phenological timing of dragonfly emergence in Japan over five decades
        Hideyuki Doi
        BIOLOGY LETTERS, Aug. 2008, Peer-reviewed
      • Latitudinal patterns in the phenological responses of leaf colouring and leaf fall to climate change in Japan
        Hideyuki Doi; Mayumi Takahashi
        GLOBAL ECOLOGY AND BIOGEOGRAPHY, Jul. 2008, Peer-reviewed
      • Distribution patterns of stream grazers and relationships between grazers and periphyton at multiple spatial scales
        Hideyuki Doi; Izumi Katano
        JOURNAL OF THE NORTH AMERICAN BENTHOLOGICAL SOCIETY, Jun. 2008, Peer-reviewed
      • Heterogeneous intra-annual climatic changes drive different phenological responses at two trophic levels
        Hideyuki Doi; Oscar Gordo; Izumi Katano
        CLIMATE RESEARCH, Jun. 2008, Peer-reviewed
      • Drifting plankton from a reservoir subsidize downstream food webs and alter community structure
        Hideyuki Doi; Kwang-Hyeon Chang; Takamitsu Ando; Hiroyuki Imai; Shin-ichi Nakano; Akio Kajimoto; Izumi Katano
        OECOLOGIA, May 2008, Peer-reviewed
      • Relationships between length and weight of freshwater macroinvertebrates in Japan
        Hitoshi Miyasaka; Motomi Genkai-Kato; Yo Miyake; Daisuke Kishi; Izumi Katano; Hideyuki Doi; Shin-ya Ohba; Naotoshi Kuhara
        LIMNOLOGY, Apr. 2008, Peer-reviewed
      • Phenological timings of leaf budburst with climate change in Japan
        Hideyuki Doi; Izumi Katano
        AGRICULTURAL AND FOREST METEOROLOGY, Mar. 2008, Peer-reviewed
      • Influence of a current style of culture on the quality of isolated pancreatic islets
        H. Takahashi; M. Goto; N. Ogawa; Y. Saitoh; K. Fujimori; Y. Kurokawa; H. Doi; S. Satomi
        TRANSPLANTATION PROCEEDINGS, Mar. 2008, Peer-reviewed
      • Parasite-induced changes in nitrogen isotope signatures of host tissues
        Hideyuki Doi; Natalia I. Yurlova; Svetlana N. Vodyanitskaya; Eisuke Kikuchi; Shuichi Shilkano; Elena N. Yadrenkina; Elena I. Zuykova
        JOURNAL OF PARASITOLOGY, Feb. 2008, Peer-reviewed
      • Food sources of the pearl oyster in coastal ecosystems of Japan: Evidence from diet and stable isotope analysis
        Kayoko Fukumori; Misa Oi; Hideyuki Doi; Noboru Okuda; Hitomi Yamaguchi; Michinobu Kuwae; Hitoshi Miyasaka; Kenji Yoshino; Yoshitsugu Koizumi; Koji Omori; Hidetaka Takeoka
        ESTUARINE COASTAL AND SHELF SCIENCE, Feb. 2008, Peer-reviewed
      • Attached microalgae contribute to planktonic food webs in bays with fish and pearl oyster farms
        Hideyuki Doi; Kwang-Hyeon Chang; Yumiko Obayashi; Mizuho Yoshihara; Mary Shime; Takako Yamamoto; Yuichiro Nishibe; Shin-ichi Nakano
        MARINE ECOLOGY PROGRESS SERIES, 2008, Peer-reviewed
      • Changes in periphyton abundance and community structure with the dispersal of a caddisfly grazer, Micrasema quadriloba
        Izumi Katano; Hideyuki Doi; Akiko Houki; Yu Isobe; Tadashi Oishi
        LIMNOLOGY, Dec. 2007, Peer-reviewed
      • Winter flowering phenology of Japanese apricot Prunus mume reflects climate change across Japan
        Hideyuki Doi
        CLIMATE RESEARCH, Jul. 2007, Peer-reviewed
      • Stream Macroinvertebrate Community Affected by Point-Source Metal Pollution
        Doi H; Takagi A; Kikuchi E
        International Review of Hydrobiology, Jun. 2007, Peer-reviewed
      • Development of a novel ELISA for detection of anti-A and anti-B antibodies in recipients of ABO-incompatible living donor liver grafts
        Akefumi Satoh; Naoki Kawagishi; Masayoshi Minegishi; Hiroyuki Takahashi; Yorihiro Akamatsu; Hideyuki Doi; Susumu Satomi
        TOHOKU JOURNAL OF EXPERIMENTAL MEDICINE, Apr. 2007, Peer-reviewed
      • Stream macroinvertebrate community affected by point-source metal pollution
        Hideyuki Doi; Atsushi Takagi; Eisuke Kikuchi
        INTERNATIONAL REVIEW OF HYDROBIOLOGY, 2007, Peer-reviewed
      • Effects of reach-scale canopy cover on trophic pathways of caddisfly larvae in a Japanese mountain stream
        Hideyuki Doi; Yasuhiro Takemon; Taichi Ohta; Yuko Ishida; Eisuke Kikuchi
        MARINE AND FRESHWATER RESEARCH, 2007, Peer-reviewed
      • Changes in carbon and nitrogen stable isotopes of chironomid larvae during growth, starvation and metamorphosis
        Hideyuki Doi; Eisuke Kikuchi; Shigeto Takagi; Shuichi Shikano
        RAPID COMMUNICATIONS IN MASS SPECTROMETRY, 2007, Peer-reviewed
      • 支川流入がダム下流の河床環境と底生動物群集に与える影響:近畿8ダム河川間での比較
        片野 泉; 土居 秀幸; 根岸 淳二郎; 皆川 朋子; 萱場 祐一
        日本陸水学会 講演要旨集, 2007
      • 成長・絶食・変態による水生昆虫の炭素・窒素安定同位体比の変化
        土居 秀幸; 菊地 永祐; 高木 茂人; 鹿野 秀一
        日本陸水学会 講演要旨集, 2007
      • Spatial changes in carbon and nitrogen stable isotopes of the plankton food web in a saline lake ecosystem
        Hideyuki Doi; Elena I. Zuykova; Eisuke Kikuchi; Shuichi Shikano; Keiichi Kanou; Natalia Yurlova; Elena Yadrenkina
        HYDROBIOLOGIA, Nov. 2006, Peer-reviewed
      • The zooplankton of Lake Chany, West Siberia, Russia
        EI Zuykova; H Doi; E Kikuchi; S Shikano; N Yurlova
        JOURNAL OF FRESHWATER ECOLOGY, Mar. 2006, Peer-reviewed
      • The use of algal-mat habitats by aquatic insect grazers: Effects of microalgal cues
        Hideyuki Doi; Izumi Katano; Eisuke Kikuchi
        Basic and Applied Ecology, 01 Mar. 2006, Peer-reviewed
      • Selective assimilation by deposit feeders: Experimental evidence using stable isotope ratios
        Hideyuki Doi; Eisuke Kikuchi; Shigeto Takagi; Shuichi Shikano
        Basic and Applied Ecology, 01 Mar. 2006, Peer-reviewed
      • The use of algal-mat habitats by aquatic insect grazers: Effects of microalgat cues
        H Doi; Katano, I; E Kikuchi
        BASIC AND APPLIED ECOLOGY, 2006, Peer-reviewed
      • Selective assimilation by deposit feeders: Experimental evidence using stable isotope ratios
        H Doi; E Kikuchi; S Takagi; S Shikano
        BASIC AND APPLIED ECOLOGY, 2006, Peer-reviewed
      • Contribution of chemoautotrophic production to freshwater macroinvertebrates in a headwater stream using multiple stable isotopes
        Hideyuki Doi; Atsushi Takagi; Chitoshi Mizota; Jun-ichi Okano; Shin-ichi Nakano; Eisuke Kikuchi
        INTERNATIONAL REVIEW OF HYDROBIOLOGY, 2006, Peer-reviewed
      • グレイザーの餌探索行動における付着藻類キュー利用の可能性
        片野 泉; 土居 秀幸
        日本陸水学会 講演要旨集, 2006
      • 空間スケール階層間における藻類食者トップダウン効果検出の違い
        土居 秀幸; 片野 泉
        日本陸水学会 講演要旨集, 2006
      • 愛媛県鹿野川ダム湖における植物プランクトン群集の現存量・組成といくつかの環境要因の季節動態
        今井 洋幸; 梶本 章生; 張 光玹; 土居 秀幸; 高山 弘太郎; 中野 伸一
        日本陸水学会 講演要旨集, 2006
      • 強酸性湖潟沼におけるサンユスリカ幼虫の二次生産
        高木 茂人; 菊地 永祐; 土居 秀幸; 鹿野 秀一
        日本陸水学会 講演要旨集, 2006
      • 近接したため池群におけるプランクトン群集の種組成および食物網構造動態解析
        張 光玄; 土居 秀幸; 西部 裕一郎; 中野 伸一
        日本陸水学会 講演要旨集, 2006
      • Interannual variations of limnological and ecological characteristics in acidic Lake Katanuma
        Shikano S; Kikuchi E; Takagi S; Doi H
        Korean Journal of Limnology, Dec. 2005, Peer-reviewed
      • Swimming behaviour of Chironomus acerbiphilus larvae in Lake Katanuma
        S Takagi; E Kikuchi; H Doi; S Shikano
        HYDROBIOLOGIA, Oct. 2005, Peer-reviewed
      • Swimming Behaviour of Chironomus acerbiphilus Larvae in Lake Katanuma
        Takagi S; Kikuchi E; Doi H; Shikano S
        Hydrobiologia, Oct. 2005, Peer-reviewed
      • Food selectivity on microalgae by Cheumatopsyche spp. (Trichoptera, Hydropsychidae) in a reservoir-stream system
        Takamitsu Ando; Hiroyuki Imai; Seiko Mizuta; Hideyuki Doi; Yo Miyake; Shin-ichi Nakano
        Proceedings of the Second Japan-Korea Joint Symposium on Limnology, Sep. 2005, Peer-reviewed
      • Spatial shifts in food sources for macrozoobenthos in an estuarine ecosystem: Carbon and nitrogen stable isotope analyses
        H Doi; M Matsumasa; T Toya; N Satoh; C Mizota; Y Maki; E Kikuchi
        ESTUARINE COASTAL AND SHELF SCIENCE, Aug. 2005, Peer-reviewed
      • Carbon stable isotope ratios of phytoplankton and benthic diatoms in Lake Katanuma with reference to those of other lakes
        Doi H; Kikuchi E; Takagi S; Shikano S
        Korean Journal of Limnology, Apr. 2005, Peer-reviewed
      • Microalgal cue for the stream grazer Glossosoma sp.
        Katano Izumi; Doi Hideyuki
        Abstracts of the Annual Meeting of the Ecological Society of Japan, 2005
      • Does a grazer Glossosoma sp. discriminate the chemical cue from periphyton ?
        KATANO Izumi; DOI Hideyuki
        Proceedings of General Assembly of The Japanese Society of Limnology, 2005
      • Carbon, nitrogen, and sulfur isotope changes and hydro-geological processes in a saline lake chain
        H Doi; E Kikuchi; C Mizota; N Satoh; S Shikano; N Yurlova; E Yadrenkina; E Zuykova
        HYDROBIOLOGIA, Nov. 2004, Peer-reviewed
      • Volcanic heat flux and short-term holomixis during the summer stratification period in a crater lake
        S Shikano; E Kikuchi; S Takagi; H Doi
        LIMNOLOGY AND OCEANOGRAPHY, Nov. 2004, Peer-reviewed
      • A study of the nitrogen stable isotope dynamics of phytoplankton in a simple natural ecosystem
        H Doi; E Kikuchi; S Shikano; S Takagi
        AQUATIC MICROBIAL ECOLOGY, Sep. 2004, Peer-reviewed
      • Preliminary studies on carbon and nitrogen stable isotope ratios analysis of food web in Lake Chany of Western Siberia
        Kikuchi E; Doi H; Shikano S; Yurlova N; Yadrenkina E; Zuykova E; Ota H
        Research and Education Center for Inlandwater Environment Shinshu University, Feb. 2004, Peer-reviewed
      • Seasonal changes of carbon and nitrogen stable isotope ratios for dominant species: chironomid larvae, phytoplankton, and benthic diatom inhabiting strongly acidic Lake Katanuma
        Doi H; Kikuchi E; Takagi S; Shikano S
        Research and Education Center for Inlandwater Environment Shinshu University, Feb. 2004, Peer-reviewed
      • Seasonal dynamics of carbon stable isotope ratios of particulate organic matter and benthic diatoms in strongly acidic Lake Katanuma
        H Doi; E Kikuchi; S Hino; T Itoh; S Takagi; S Shikano
        AQUATIC MICROBIAL ECOLOGY, Aug. 2003, Peer-reviewed
      • Isotopic (delta C-13) evidence for the autochthonous origin of sediment organic matter in the small and acidic Lake Katanuma, Japan
        H Doi; E Kikuchi; S Hino; T Itoh; S Takagi; S Shikano
        MARINE AND FRESHWATER RESEARCH, 2003, Peer-reviewed

      Misc.

      • Changes in foodweb descibed by stable isotope ratio of carbon and nitrogen along the downstream gradient: an example in Niyodo river.
        Kamauchi Hiromitsu; Arai Hirotsugu; Fukushima Keitaro; Fukuzawa Karibu; Doi Hideyuki; Tominaga Koji; Kondo Kazuma; Tokuchi Naoko
        The Japanese Forest Society Congress, 2009
      • Detection of freshwater mussels (Sinanodonta spp.) in artificial ponds through environmental DNA: a comparison with traditional hand collection methods (vol 21, pg 59, 2020)
        Daisuke Togaki; Hideyuki Doi; Izumi Katano
        LIMNOLOGY, Apr. 2020
      • Note on important and novel findings : Detection of freshwater mussels (Sinanodonta spp.) in artificial ponds through environmental DNA : a comparison with traditional hand collection methods
        Togaki Daisuke; Doi Hideyuki; Katano Izumi
        Limnology, Jan. 2020
      • 河川生態系の調査・分析方法(分担執筆)
        土居 秀幸; 太田 民久; 石川 尚人
        2019
      • 海底下微生物の全球的な多様性分布と規定環境要因
        星野辰彦; 土居秀幸; XIAO Nan; 諸野祐樹; 浦本豪一郎; 稲垣史生
        日本地質学会学術大会講演要旨, 2018
      • Issues and prospects of environmental DNA monitoring methods
        MINAMOTO Toshifumi; UCHII Kimiko; TAKAHARA Teruhiko; DOI Hideyuki
        Environmental Conservation Engineering, Dec. 2017, Invited
      • FUNDAMENTAL STUDY ON ESTIMATING ABUNDANCE OF STREAM FISH USING ENVIRONMENTAL DNA ANALYSIS
        赤松 良久; 乾 隆帝; 一松 晃弘; 河野 誉仁; 土居 秀幸
        水工学論文集 Annual journal of Hydraulic Engineering, JSCE, 2017
      • 環境DNAを用いたニホンザリガニ生息場の推定における季節影響
        池田幸資; 土居秀幸; 田中一典; 川井唯史; 荒木仁志; 高原輝彦; 源利文; 鈴木透; 小泉逸郎; 根岸淳二郎
        土木学会年次学術講演会講演概要集(CD-ROM), 2016
      • 安定同位体を用いた餌資源・食物網調査法
        土居 秀幸; 兵藤 不二夫; 石川 尚人
        2016
      • Environmental DNA analysis: A new monitoring tool for aquatic species
        Kimiko Uchii; Toshifumi Minamoto; Hideyuki Doi; Teruhiko Takahara; Hiroki Yamanaka; Izumi Katano
        Japanese Journal of Ecology, 2016
      • Environmental DNA analysis in field research
        Hiroki Yamanaka; Toshifumi Minamoto; Teruhiko Takahara; Kimiko Uchii; Hideyuki Doi
        Japanese Journal of Ecology, 2016, Peer-reviewed
      • Current state of biomonitoring method using environment DNA analysis
        Teruhiko Takahara; Hiroki Yamanaka; Toshifumi Minamoto; Hideyuki Doi; Kimiko Uchii
        Japanese Journal of Ecology, 2016, Peer-reviewed
      • Towards the further developments of environmental DNA analysis
        Toshifumi Minamoto; Kimiko Uchii; Hiroki Yamanaka; Teruhiko Takahara; Izumi Katano; Hideyuki Doi
        Japanese Journal of Ecology, 2016
      • Preliminary experiment for detection method of fish inhabiting agricultural drainage canals using environmental DNA
        KOIZUMI Noriyuki; TAKAHARA Teruhiko; MINAMOTO Toshifumi; DOI Hideyuki; MORI Atsushi; WATANABE Keiji; TAKEMURA Takeshi
        Irrigation, Drainage and Rural Engineering Journal, Jun. 2015, Peer-reviewed
      • Longitudinal macroinvertebrate organization over contrasting discontinuities: effects of a dam and a tributary
        Izumi Katano; Junjiro N. Negishi; Tomoko Minagawa; Hideyuki Doi; Yoichi Kawaguchi; Yuichi Kayaba
        JOURNAL OF THE NORTH AMERICAN BENTHOLOGICAL SOCIETY, Jun. 2009
      • ダム下流における支川の効果を考える:供給土砂量の異なる2河川間の比較
        片野 泉; 佐川 志朗; 真田 誠至; 土居 秀幸; 根岸 淳二郎; 皆川 朋子; 萱場 祐一
        日本陸水学会 講演要旨集, 2008
      • Researcher to field: Estimating stream food webs using stable isotopes: trophic pathways to invertebrates under a canopy-covered stream
        土居 秀幸
        河川, Nov. 2007
      • Analysis of food sources for Chironomus acerbiphilus larvae in strongly acidic Lake Katanuma
        DOI Hideyuki; KIKUCHI Eisuke
        Japanese journal of limnology, 30 Jun. 2002
      • Dynamics of Stable Isotope Ratios of Diatoms
        DOI Hideyuki
        Radioisotopes, 15 Feb. 2002
      • Carbon and nitrogen stable isotope ratios analysis of food sources for Chironomus acerbiphilus larvae (Diptera Chironomidae) in strongly acidic Lake Katanuma
        Hideyuki DOI; Eisuke KIKUCHI; Shuichi SHIKANO
        RADIOISOTOPES, 2001

      Awards

      • 07 Apr. 2023
        PLOS ONE Long Service Award
        Publisher
        Hideryuki Dioi
      • 08 Mar. 2022
        村尾育英会 学術賞
      • 28 Jul. 2021
        兵庫県立大学最優秀研究活動賞
      • 28 Oct. 2020
        兵庫県立大学 研究活動特別賞
      • 16 Mar. 2010
        第14回日本生態学会宮地賞
      • 01 Mar. 2021
        Deep Life Paper Awards 2020(International Center for Deep Life Investigation)
      • 10 Mar. 2005
        青葉理学振興会賞
      • 25 Mar. 2005
        東北大学生命科学研究科長賞
      • 12 Nov. 2011
        信州フィールド賞(信州大学)
      • 11 Sep. 2016
        第16回吉村賞(日本陸水学会)
      • 31 Aug. 2018
        クリタ水・環境科学研究優秀賞(クリタ水・環境科学振興財団)

      External funds: Kakenhi

      • Detection of the whole biota with environmental DNA measured PCR-free ultra-deep whole genome sequencing
        Grant-in-Aid for Challenging Research (Pioneering)
        Medium-sized Section 64:Environmental conservation measure and related fields
        University of Hyogo
        土居 秀幸
        From 30 Jun. 2022, To 31 Mar. 2026, Granted
        生物調査;環境DNA;全ゲノムシークエンス
      • 河川の生物多様性をはぐくむキーハビタット・河床間隙域を環境DNAで評価する
        Grant-in-Aid for Scientific Research (C)
        Basic Section 64040:Social-ecological systems-related
        Nara Women's University
        片野 泉
        From 01 Apr. 2022, To 31 Mar. 2025, Granted
        環境DNA;河床間隙
      • 湖沼生態系への温暖化対策の影響解明に向けた環境DNAによる新たな評価手法の構築
        Grant-in-Aid for Scientific Research (C)
        Basic Section 63040:Environmental impact assessment-related
        Matsuyama University
        槻木 玲美
        From 01 Apr. 2021, To 31 Mar. 2024, Granted
        近過去;環境DNA;温暖化;湖沼;動物プランクトン;琵琶湖;寄生者;植物プランクトン;環境変化;微生物
      • 堆積物コアDNAを用いた海跡湖の近過去魚類群集と環境変遷との関係解明
        Grant-in-Aid for Scientific Research (B)
        Basic Section 64040:Social-ecological systems-related
        Shimane University
        高原 輝彦
        From 01 Apr. 2021, To 31 Mar. 2024, Granted
        環境DNA;海跡湖;魚類メタバーコーディング;山陰;堆積物コア;環境DNAメタバーコーディング;種特異的検出;堆積物コアDNA;宍道湖;汽水湖;魚介類;水草;メタバーコーディング;魚類群集
      • Establishment of key marker dataset of Beppu Bay sediments for ratification of the Anthropocene GSSP
        Grant-in-Aid for Scientific Research (B)
        Basic Section 17030:Human geosciences-related
        Ehime University
        加 三千宣
        From 01 Apr. 2021, To 31 Mar. 2024, Granted
        人新世;標準模式地;別府湾堆積物;環境DNA;GSSP;放射性核種;DNA層序;渦鞭毛藻
      • 魚類の成長ステージを把握する環境RNA手法の開発:ニホンウナギをモデルとして
        Grant-in-Aid for Challenging Research (Exploratory)
        Medium-sized Section 40:Forestry and forest products science, applied aquatic science, and related fields
        Shimane University
        高原 輝彦
        From 30 Jul. 2020, To 31 Mar. 2023, Granted
        環境RNA;環境DNA;ニホンウナギ;性成熟;黄ウナギ;銀ウナギ;変態
      • Analysis of biological responses tol toxicity in model organisms using environmental RNA.
        Grant-in-Aid for Challenging Research (Exploratory)
        Medium-sized Section 64:Environmental conservation measure and related fields
        University of Hyogo
        Doi Hideyuki
        From 28 Jun. 2019, To 31 Mar. 2021, Project Closed
        環境RNA;環境DNA;毒性;遺伝子発現;RNAseq;RNシークエンス;トランスクリプトーム;毒性試験;生態毒性
      • Reconstruction of Past Fish Communities Using eDNA Metabarcoding in Coastal Sediment Cores
        Grant-in-Aid for Scientific Research (B)
        Basic Section 63040:Environmental impact assessment-related
        University of Hyogo
        Hideyuki Doi
        From 01 Apr. 2019, To 31 Mar. 2022, Project Closed
        環境DNA;堆積物;海洋;魚類;メタバーコーディング;近過去復元;哺乳類;環境影響調査
      • A new environmental DNA analysis to overcome inhibition: construction of a Biomass estimation equation with inhibition factors
        Grant-in-Aid for Scientific Research (C)
        Basic Section 64010:Environmental load and risk assessment-related
        Nara Women's University
        Izumi Katano
        From 01 Apr. 2018, To 31 Mar. 2022, Project Closed
        環境DNA;泥;細菌;植物プランクトン;有機物;POM;PIM;TP;TN;DOC;クロロフィル;細菌数;ゼブラフィッシュ;生物多様性保全;水質
      • Reconstruction of abundance of small pelagic species using sedimentary DNA
        Grant-in-Aid for Challenging Research (Exploratory)
        Ehime University
        Kuwae Michinobu
        From 30 Jun. 2017, To 31 Mar. 2020, Project Closed
        環境DNA;海洋堆積物;魚類個体数;長期動態;魚類;別府湾堆積物;イワシ類;マアジ;有用魚種;堆積物;別府湾
      • Development of prediction method for mass death of fish by using eRNA and stress hormone
        Grant-in-Aid for Scientific Research (C)
        Shimane University
        Teruhiko Takahara
        From 01 Apr. 2017, To 31 Mar. 2020, Project Closed
        環境DNA;環境RNA;ストレスホルモン;水生動物;コルチゾール;環境mRNA;環境DNAメタバーコーディング;宍道湖;DNA断片長;魚介類;大量死;環境技術;環境分析;環境変動;生態学
      • Empirical Study on Sustainable Integrated Sediment Management for River Basin through the Restoration of Sound Sediment Transport System
        Grant-in-Aid for Scientific Research (B)
        Yamaguchi University
        Yoshihisa Akamatsu
        From 01 Apr. 2017, To 31 Mar. 2020, Project Closed
        通砂;生態系モデル;河床変動;UAV;環境DNA;総合土砂管理;流域;ダム通砂;河床変動モデル;流域総合土砂管理;水工水理学;環境水理学
      • The effects of chemical-communication network in freshwater ecosystem on adaptation evolution of prey species and a community
        Grant-in-Aid for Young Scientists (B)
        Shimane University
        Teruhiko Takahara
        From 01 Apr. 2015, To 31 Mar. 2017, Project Closed
        オタマジャクシ;化学シグナル;ケミカルコミュニケーション;捕食ー被食関係;水圏生態系
      • Environmental DNA methods for muddy water to develop the noninvasive investigation on organisms in the wetlands
        Grant-in-Aid for Scientific Research (C)
        Nara Women's University;University of Hyogo
        Izumi Katano
        From 01 Apr. 2015, To 31 Mar. 2018, Project Closed
        水生生物;泥;有機物;ため池;湿地;河川
      • Stoichiometric effects of Light and nutrient balance on aquatic communities: field tests with large manipulation experiments in North America
        Grant-in-Aid for Scientific Research (A)
        Tohoku University
        Urabe Jotaro
        From 01 Apr. 2015, To 31 Mar. 2018, Project Closed
        生物群集;湖沼生態系;操作実験;食物連鎖;地球環境変化;化学量論;プランクトン;水草;生態系;湖沼;食物網;生物生産;光;栄養塩;ストイキオメトリー
      • Non-invasive monitoring and biomass estimation of salmonid fish using environmental DNA
        Grant-in-Aid for Challenging Exploratory Research
        Hokkaido University
        Hitoshi ARAKI
        From 01 Apr. 2014, To 31 Mar. 2017, Project Closed
        環境DNA;サケ科魚類;モニタリング;サケ;定量;生物量;環境DNA検出;飼育実験;野外調査;国際情報交換
      • Spatial hierarchy for community and ecosystem studies using the ponds on the islands
        Grant-in-Aid for Young Scientists (B)
        Hiroshima University
        HIDEYUKI DOI
        From 01 Apr. 2012, To 31 Mar. 2015, Project Closed
        生物群集;水域生態系;ため池;環境DNA;群集生態学;食物網;生態学;外来種
      list
        Last Updated :2023/09/28

        Education

        Teaching subject(s)

        • From 01 Apr. 2023, To 31 Mar. 2024
          Biosphere Informatics
          3224, Fall, Graduate School of Informatics, 2
        • From 01 Apr. 2023, To 31 Mar. 2024
          Bioresource and Environmental Informatics II
          6807, Fall, Faculty of Agriculture, 2
        • From 01 Apr. 2023, To 31 Mar. 2024
          Bioresource and Environmental Informatics I
          6805, Spring, Faculty of Agriculture, 2
        • From 01 Apr. 2023, To 31 Mar. 2024
          Animal Science
          5699, Spring, Faculty of Agriculture, 2
        • From 01 Apr. 2023, To 31 Mar. 2024
          Outline of Bioresource Science A
          5112, Spring, Faculty of Agriculture, 2
        list
          Last Updated :2023/09/28

          Administration

          Faculty management (title, position)

          • From 01 Apr. 2023, To 31 Mar. 2024
            評価・広報委員会 副委員長

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