Basic Information

Faculty

• Faculty of Agriculture

Email Address

• Email Address

  doi.hideyuki.8jkyoto-u.ac.jp

Professional Memberships

• ASLO
• ECOLOGICAL SOCIETY OF AMERICA
• The eDNA Society
• Ecology and Civil Engineering Society
• THE JAPANESE SOCIETY OF LIMNOLOGY
• THE ECOLOGICAL SOCIETY OF JAPAN

Academic Degree

• 25 Mar. 2005

  東北大学博士（生命科学）
• 25 Mar. 2002

  東北大学修士（理学）

Academic Resume (Undergraduate School/Majors)

• 大阪府立大学, 総合科学部総合科学科, 卒業

Research History

• From Oct. 2022, To Present

  Kyoto University, Graduate School of Informatics
• From Apr. 2021, To Sep. 2022

  University of Hyogo, 大学院情報科学研究科
• From Apr. 2015, To Mar. 2021

  University of Hyogo, 大学院シミュレーション学研究科
• From Mar. 2011, To Apr. 2015

  Hiroshima University, サステナブル・ディベロップメント実践研究センター
• From Aug. 2008, To Feb. 2011

  Carl-von-Ossietzky University Oldenburg, JSPS research fellow for abroad
• From Apr. 2005, To Jul. 2008

  Ehime University, 農学部, JSPS fellow (PD)
• From Jun. 2006, To May 2007

  University of Washington, Visiting scholar

ID,URL

• ORCID ID

  0000-0002-2701-3982

• J-Global ID

  201801007621959746

• Researcher number

  80608505

• External link

  https://ecologyweb.jimdofree.com

researchmap URL

• https://researchmap.jp/hideyuki.doi

Research

Research Interests

• Ecology
• Climate change
• Food web
• 環境DNA

Research Areas

• Life sciences, Ecology and environmental science
• Life sciences, Biodiversity and systematics

Papers

• Sedimentary DNA can reveal the past population dynamics of a pelagic copepod

  Kai Nakane; Xin Liu; Hideyuki Doi; Gael Dur; Michinobu Kuwae; Syuhei Ban; Narumi Tsugeki

  FRESHWATER BIOLOGY, Apr. 2023

  
• The eDNA Society International Meeting 2023, “moving from knowledge into practice”

  Hiroki Yamanaka; Hideyuki Doi; Hitoshi Araki; Kimiko Uchii; Toshifumi Minamoto

  Environmental DNA, 14 Aug. 2023

  
• Species traits and ecosystem characteristics affect species detection by eDNA metabarcoding in lake fish communities

  Hideyuki Doi; Shunsuke Matsuoka; Shin‐ichiro S. Matsuzaki; Mariko Nagano; Hirotoshi Sato; Hiroki Yamanaka; Saeko Matsuhashi; Satoshi Yamamoto; Toshifumi Minamoto; Hitoshi Araki; Kousuke Ikeda; Atsuko Kato; Kouichi Kumei; Nobutaka Maki; Takashi Mitsuzuka; Teruhiko Takahara; Kimihito Toki; Natsuki Ueda; Takeshi Watanabe; Kanji Yamazoe; Masaki Miya

  Freshwater Biology, Jun. 2023

  
• Reconstruction of 100-year dynamics in Daphnia spawning activity revealed by sedimentary DNA

  Narumi Tsugeki; Kai Nakane; Hideyuki Doi; Natsuki Ochi; Michinobu Kuwae

  Scientific Reports, Feb. 2022, Peer-reviewed

  
• Comparing environmental DNA with whole pond survey to estimate the total biomass of fish species in ponds

  Rio Souma; Izumi Katano; Hideyuki Doi; Teruhiko Takahara; Toshifumi Minamoto

  Freshwater Biology, 23 Feb. 2023

  
• Spatiotemporal variability in a copepod community associated with fluctuations in salinity and trophic state in an artificial brackish reservoir at Saemangeum, South Korea

  Yusuke Oda; Hideyuki Doi; Sho Nakano; Jong-Mo Suh; Hye-Ji Oh; Mei-Yan Jin; Yong-Jae Kim; Masaki Sakamoto; Kwang-Hyeon Chang

  PLOS ONE, 20 Dec. 2018, Peer-reviewed

  
• Estimating native and invasive crayfish distributions in relation to culvert barriers with environmental DNA

  Kousuke Ikeda; Hideyuki Doi; Shigeharu Terui; Atsuko Kato; Takashi Mitsuzuka; Tadashi Kawai; Junjiro N. Negishi

  Freshwater Science, 01 Sep. 2019, Peer-reviewed

  
• Using environmental DNA to detect an endangered crayfish Cambaroides japonicus in streams

  Kousuke Ikeda; Hideyuki Doi; Kazunori Tanaka; Tadashi Kawai; Junjiro N. Negishi

  Conservation Genetics Resources, Sep. 2016, Peer-reviewed

  
• Effective environmental DNA collection for an endangered catfish species: testing for habitat and daily periodicity

  Teruhiko Takahara; Hideyuki Doi; Toshihiro Kosuge; Nanae Nomura; Nobutaka Maki; Toshifumi Minamoto; Katsutoshi Watanabe

  Ichthyological Research, 24 Dec. 2022

  
• Diurnal detection of environmental DNA of the semi-aquatic water shrew Chimarrogale platycephala using 25-h water sampling in streams

  Nao Shiozuka; Izumi Katano; Hideyuki Doi; Masatoshi Nakamura; Tomoyasu Shirako; Hidetaka Ichiyanagi

  Landscape and Ecological Engineering, 20 Oct. 2022

  
• Terrigenous subsidies in lakes support zooplankton production mainly via a green food chain and not the brown food chain

  Fumiya Hirama; Jotaro Urabe; Hideyuki Doi; Takehiro Kazama; Takumi Noguchi; Tyler H. Tappenbeck; Izumi Katano; Masato Yamamichi; Takehito Yoshida; James J. Elser

  Frontiers in Ecology and Evolution, 25 Aug. 2022

  
• Environmental DNA methods for detecting two invasive alien species (American bullfrog and red swamp crayfish) in Japanese ponds

  Shigeki Ogata; Hideyuki Doi; Takeshi Igawa; Shohei Komaki; Teruhiko Takahara

  Ecological Research, 05 Jul. 2022

  
• Influence of DNA extraction kits on freshwater fungal DNA metabarcoding

  Shunsuke Matsuoka; Yoriko Sugiyama; Mariko Nagano; Hideyuki Doi

  PeerJ, 27 May 2022

  
• Development of primer–probe sets for environmental DNA-based monitoring of pond smelt Hypomesus nipponensis and Japanese icefish Salangichthys microdon

  Teruhiko Takahara; Katsuya Fukui; Daisuke Hiramatsu; Hideyuki Doi; Masato Fujii; Toshifumi Minamoto

  Landscape and Ecological Engineering, 19 Apr. 2022

  
• Effects of sediment replenishment on riverbed environments and macroinvertebrate assemblages downstream of a dam

  Izumi Katano; Junjiro N. Negishi; Tomoko Minagawa; Hideyuki Doi; Yôichi Kawaguchi; Yuichi Kayaba

  Scientific Reports, Dec. 2021

  
• Simultaneous absolute quantification and sequencing of fish environmental DNA in a mesocosm by quantitative sequencing technique

  Tatsuhiko Hoshino; Ryohei Nakao; Hideyuki Doi; Toshifumi Minamoto

  Scientific Reports, Dec. 2021

  
• Evaluation of seasonal dynamics of fungal DNA assemblages in a flow-regulated stream in a restored forest using eDNA metabarcoding.

  Shunsuke Matsuoka; Yoriko Sugiyama; Yoshito Shimono; Masayuki Ushio; Hideyuki Doi

  Environmental microbiology, 13 Jul. 2021

  
• Causal analysis of the temperature impact on deep-sea biodiversity.

  Hideyuki Doi; Moriaki Yasuhara; Masayuki Ushio

  Biology letters, Jul. 2021

  
• Utility of environmental DNA analysis for effective monitoring of invasive fish species in reservoirs

  Toshiaki Jo; Saki Ikeda; Arisa Fukuoka; Takashi Inagawa; Jiro Okitsu; Izumi Katano; Hideyuki Doi; Katsuki Nakai; Hidetaka Ichiyanagi; Toshifumi Minamoto

  Ecosphere, Jun. 2021, Peer-reviewed

  
• Compilation of real‐time PCR conditions toward the standardization of environmental DNA methods

  Hideyuki Doi; Toshifumi Minamoto; Teruhiko Takahara; Satsuki Tsuji; Kimiko Uchii; Satoshi Yamamoto; Izumi Katano; Hiroki Yamanaka

  Ecological Research, May 2021, Peer-reviewed

  
• Estimation of biodiversity metrics by environmental DNA metabarcoding compared with visual and capture surveys of river fish communities

  Hideyuki Doi; Ryutei Inui; Shunsuke Matsuoka; Yoshihisa Akamatsu; Masuji Goto; Takanori Kono

  Freshwater Biology, 13 Apr. 2021

  
• Effects of sediment replenishment on riverbed environments and macroinvertebrate assemblages downstream of a dam.

  Izumi Katano; Junjiro N Negishi; Tomoko Minagawa; Hideyuki Doi; Yôichi Kawaguchi; Yuichi Kayaba

  Scientific reports, 08 Apr. 2021

  
• A unified framework for herbivore-to-producer biomass ratio reveals the relative influence of four ecological factors.

  Takehiro Kazama; Jotaro Urabe; Masato Yamamichi; Kotaro Tokita; Xuwang Yin; Izumi Katano; Hideyuki Doi; Takehito Yoshida; Nelson G Hairston Jr

  Communications biology, 08 Jan. 2021

  
• Sedimentary DNA tracks decadal-centennial changes in fish abundance

  Michinobu Kuwae; Hiromichi Tamai; Hideyuki Doi; Masayuki K. Sakata; Toshifumi Minamoto; Yoshiaki Suzuki

  Communications Biology, Dec. 2020, Peer-reviewed

  
• Complementary molecular methods reveal comprehensive phylogenetic diversity integrating inconspicuous lineages of early-diverged wood-decaying mushrooms

  Takashi Shirouzu; Shunsuke Matsuoka; Hideyuki Doi; Nobuaki Nagata; Masayuki Ushio; Kentaro Hosaka

  Scientific Reports, Dec. 2020, Peer-reviewed

  
• Exploring a legendary giant squid: an environmental DNA approach

  Toshifumi Wada; Hideyuki Doi; Daisuke Togaki; Ryotaro Kaida; Mariko Nagano; Izumi Katano; Masami Suzuki; Tetsuya Ohtani; Hiromune Mitsuhashi

  Marine Biology, Nov. 2020, Peer-reviewed

  
• Global diversity of microbial communities in marine sediment

  Tatsuhiko Hoshino; Hideyuki Doi; Go-Ichiro Uramoto; Lars Wörmer; Rishi R. Adhikari; Nan Xiao; Yuki Morono; Steven D’Hondt; Kai-Uwe Hinrichs; Fumio Inagaki

  Proceedings of the National Academy of Sciences, 19 Oct. 2020, Peer-reviewed

  
• Broad-scale detection of environmental DNA for an invasive macrophyte and the relationship between DNA concentration and coverage in rivers

  Hideyuki Doi; Yoshihisa Akamatsu; Masuji Goto; Ryutei Inui; Takashi Komuro; Mariko Nagano; Toshifumi Minamoto

  Biological Invasions, 12 Oct. 2020, Peer-reviewed

  
• Environmental DNA metabarcoding for biodiversity monitoring of a highly diverse tropical fish community in a coral reef lagoon: Estimation of species richness and detection of habitat segregation

  Shin‐ichiro Oka; Hideyuki Doi; Kei Miyamoto; Nozomi Hanahara; Tetsuya Sado; Masaki Miya

  Environmental DNA, 28 Aug. 2020, Peer-reviewed

  
• Suppression of environmental DNA degradation in water samples associated with different storage temperature and period using benzalkonium chloride

  Teruhiko Takahara; Junya Taguchi; Satoshi Yamagishi; Hideyuki Doi; Shigeki Ogata; Hiroki Yamanaka; Toshifumi Minamoto

  Limnology and Oceanography: Methods, 13 Aug. 2020, Peer-reviewed

  
• An illustrated manual for environmental DNA research: Water sampling guidelines and experimental protocols

  Toshifumi Minamoto; Masaki Miya; Tetsuya Sado; Satoquo Seino; Hideyuki Doi; Michio Kondoh; Keigo Nakamura; Teruhiko Takahara; Satoshi Yamamoto; Hiroki Yamanaka; Hitoshi Araki; Wataru Iwasaki; Akihide Kasai; Reiji Masuda; Kimiko Uchii

  Environmental DNA, 10 Aug. 2020, Peer-reviewed

  
• Illumina iSeq 100 and MiSeq exhibit similar performance in freshwater fish environmental DNA metabarcoding

  Ryohei Nakao; Ryutei Inui; Yoshihisa Akamatsu; Masuji Goto; Hideyuki Doi; Shunsuke Matsuoka

  04 Aug. 2020

  
• Ecological and evolutionary factors of intraspecific variation in inducible defenses: Insights gained from Daphnia experiments

  Mariko Nagano; Hideyuki Doi

  Ecology and Evolution, 03 Aug. 2020, Peer-reviewed

  
• Idea paper: Community‐interaction analyses contribute to improving the performance of microbial fuel cells

  Hideyuki Doi

  Ecological Research, 08 Jul. 2020, Peer-reviewed

  
• Effects of sampling seasons and locations on fish environmental DNA metabarcoding in dam reservoirs

  Kana Hayami; Masayuki K. Sakata; Takashi Inagawa; Jiro Okitsu; Izumi Katano; Hideyuki Doi; Katsuki Nakai; Hidetaka Ichiyanagi; Ryo O. Gotoh; Masaki Miya; Hirotoshi Sato; Hiroki Yamanaka; Toshifumi Minamoto

  Ecology and Evolution, 06 Jun. 2020, Peer-reviewed

  
• Taxonomic, functional, and phylogenetic diversity of fungi in a forest-tundra ecotone in Québec

  Shunsuke Matsuoka; Hideyuki Doi; Shota Masumoto; Ryo Kitagawa; Keita Nishizawa; Kaho Tanaka; Motohiro Hasegawa; Satoru Hobara; Takashi Osono; Akira S. Mori; Masaki Uchida

  Polar Science, 2020

  
• Environmental DNA detection and quantification of invasive red-eared sliders, Trachemy scripta elegans, in ponds and the influence of water quality

  Aozora Kakuda; Hideyuki Doi; Rio Souma; Mariko Nagano; Toshifumi Minamoto; Izumi Katano

  PeerJ, 06 Dec. 2019, Peer-reviewed

  
• Evaluation of detection probabilities at the water-filtering and initial PCR steps in environmental DNA metabarcoding using a multispecies site occupancy model

  Hideyuki Doi; Keiichi Fukaya; Shin-ichiro Oka; Keiichi Sato; Michio Kondoh; Masaki Miya

  Scientific Reports, Dec. 2019, Peer-reviewed

  
• Comparison of inhibition resistance among PCR reagents for detection and quantification of environmental DNA

  Kimiko Uchii; Hideyuki Doi; Teruyuki Okahashi; Izumi Katano; Hiroki Yamanaka; Masayuki K. Sakata; Toshifumi Minamoto

  Environmental DNA, 15 Nov. 2019, Peer-reviewed

  
• Biogeographic Patterns of Ectomycorrhizal Fungal Communities Associated With Castanopsis sieboldii Across the Japanese Archipelago

  Shunsuke Matsuoka; Takaya Iwasaki; Yoriko Sugiyama; Eri Kawaguchi; Hideyuki Doi; Takashi Osono

  Frontiers in Microbiology, Nov. 2019, Peer-reviewed

  
• Seasonal change in environmental DNA concentration of a submerged aquatic plant species

  MATSUHASHI Saeko; MINAMOTO Toshifumi; DOI Hideyuki

  Freshwater Science, Sep. 2019, Peer-reviewed

  
• The detection of aquatic macroorganisms using environmental DNA analysis—A review of methods for collection, extraction, and detection

  Satsuki Tsuji; Teruhiko Takahara; Hideyuki Doi; Naoki Shibata; Hiroki Yamanaka

  Environmental DNA, 20 Jul. 2019, Peer-reviewed

  
• Spatial structure of fungal DNA assemblages revealed with eDNA metabarcoding in a forest river network in western Japan

  Shunsuke Matsuoka; Yoriko Sugiyama; Hirotoshi Sato; Izumi Katano; Ken Harada; Hideyuki Doi

  Metabarcoding and Metagenomics, 10 Jul. 2019, Peer-reviewed

  
• Evaluation of biodiversity metrics through environmental DNA metabarcoding outperforms visual and capturing surveys

  Hideyuki Doi; Ryutei Inui; Shunsuke Matsuoka; Yoshihisa Akamatsu; Masuji Goto; Takanori Kono

  bioRχiv, May 2019

  
• Using environmental DNA to estimate the seasonal distribution and habitat preferences of a Japanese basket clam in Lake Shinji, Japan

  TAKAHARA Teruhiko; IKEBUCHI Takashi; DOI Hideyuki; MINAMOTO Toshifumi

  Estuarine, Coastal and Shelf Science, Mar. 2019, Peer-reviewed

  
• Trophic niche breadth of pond zooplankton species using stable isotope analysis and the relationship with the abiotic and biotic factors

  Hideyuki Doi; Kwang-Hyeon Chang; Shin-ichi Nakano

  Royal Society Open Science, 31 Jan. 2019, Peer-reviewed

  
• Environmental DNA metabarcoding for fish community analysis in backwater lakes: A comparison of capture methods

  Kazuya Fujii; Arga Chandrashekar Anil; Hideyuki Doi; Shunsuke Matsuoka; Mariko Nagano; Hirotoshi Sato; Hiroki Yamanaka

  PLOS ONE, 31 Jan. 2019, Peer-reviewed

  
• A shady phytoplankton paradox: when phytoplankton increases under low light

  Masato Yamamichi; Takehiro Kazama; Kotaro Tokita; Izumi Katano; Hideyuki Doi; Takehito Yoshida; Nelson G. Hairston, Jr; Jotaro Urabe

  Proceedings of the Royal Society B: Biological Sciences, 11 Jul. 2018, Peer-reviewed

  
• Global dataset for carbon and nitrogen stable isotope ratios of lotic periphyton

  Naoto F. Ishikawa; Hideyuki Doi; Jacques C. Finlay

  Ecological Research, 28 May 2018, Peer-reviewed

  
• Degree of high phenotypic plasticity in wild populations of Daphnia in early spring

  Mariko Nagano; Hideyuki Doi

  Journal of Limnology, 21 Mar. 2018, Peer-reviewed

  
• An analytical framework for estimating aquatic species density from environmental DNA

  Thierry Chambert; David S. Pilliod; Caren S. Goldberg; Hideyuki Doi; Teruhiko Takahara

  Ecology and Evolution, 01 Mar. 2018, Peer-reviewed

  
• DEVELOPMENT OF UAV FOR WATER SAMPLING AND ITS PRACTICAL USE IN DAM RESERVOIR AND RIVER

  AKAMATSU Yoshihisa; WATANABE Yutaka; HIRASAKA Naoyuki; DOI Hideyuki; GOTO Masuji; KOMURO Takashi; INUI Ryutei; KONO Takanori

  Advances in River Engineering, 2018

  
• Usefulness and limitations of sample pooling for environmental DNA metabarcoding of freshwater fish communities

  Hirotoshi Sato; Yuki Sogo; Hideyuki Doi; Hiroki Yamanaka

  Scientific Reports, Dec. 2017, Peer-reviewed

  
• Correction to ‘Starvation effects on nitrogen and carbon stable isotopes of animals: an insight from meta-analysis of fasting experiments’

  Hideyuki Doi; Fumikazu Akamatsu; Angélica L. González

  Royal Society Open Science, Nov. 2017, Peer-reviewed

  
• Water sampling for environmental DNA surveys by using an unmanned aerial vehicle

  Hideyuki Doi; Yoshihisa Akamatsu; Yutaka Watanabe; Masuji Goto; Ryutei Inui; Izumi Katano; Mariko Nagano; Teruhiko Takahara; Toshifumi Minamoto

  Limnology and Oceanography: Methods, 01 Nov. 2017, Peer-reviewed

  
• Distinct seasonal migration patterns of Japanese native and non-native genotypes of common carp estimated by environmental DNA

  Kimiko Uchii; Hideyuki Doi; Hiroki Yamanaka; Toshifumi Minamoto

  ECOLOGY AND EVOLUTION, Oct. 2017, Peer-reviewed

  
• A macroecological perspective for phenological research under climate change

  Hideyuki Doi; Oscar Gordo; Terutaka Mori; Mayumi T. Kubo

  ECOLOGICAL RESEARCH, Sep. 2017, Peer-reviewed

  
• Starvation effects on nitrogen and carbon stable isotopes of animals: an insight from meta-analysis of fasting experiments

  Doi, Hideyuki; Akamatsu, Fumikazu; Gonzalez, Angelica L.

  Royal Society Open Science, Aug. 2017, Peer-reviewed

  
• Detection of an endangered aquatic heteropteran using environmental DNA in a wetland ecosystem

  Hideyuki Doi; Izumi Katano; Yusuke Sakata; Rio Souma; Toshihiro Kosuge; Mariko Nagano; Kousuke Ikeda; Koki Yano; Koji Tojo

  ROYAL SOCIETY OPEN SCIENCE, Jul. 2017, Peer-reviewed

  
• Environmental DNA method for estimating salamander distribution in headwater streams, and a comparison of water sampling methods

  Izumi Katano; Ken Harada; Hideyuki Doi; Rio Souma; Toshifumi Minamoto

  PLOS ONE, May 2017, Peer-reviewed

  
• Nuclear internal transcribed spacer-1 as a sensitive genetic marker for environmental DNA studies in common carp Cyprinus carpio

  Toshifumi Minamoto; Kimiko Uchii; Teruhiko Takahara; Takumi Kitayoshi; Satsuki Tsuji; Hiroki Yamanaka; Hideyuki Doi

  MOLECULAR ECOLOGY RESOURCES, Mar. 2017, Peer-reviewed

  
• Isopropanol precipitation method for collecting fish environmental DNA

  Hideyuki Doi; Kimiko Uchii; Saeko Matsuhashi; Teruhiko Takahara; Hiroki Yamanaka; Toshifumi Minamoto

  LIMNOLOGY AND OCEANOGRAPHY-METHODS, Feb. 2017, Peer-reviewed

  
• 菌類メタバーコーディングによる河川水中の菌類相評価

  松岡 俊将; 佐藤 博俊; 原田 憲; 片野 泉; 土居 秀幸

  日本菌学会大会講演要旨集, 2017

  
• Distribution and drift dispersal dynamics of a caddisfly grazer in response to resource abundance and its ontogeny

  Izumi Katano; Hiromune Mitsuhashi; Hideyuki Doi; Yu Isobe; Tadashi Oishi

  ROYAL SOCIETY OPEN SCIENCE, Jan. 2017, Peer-reviewed

  
• Environmental DNA analysis for estimating the abundance and biomass of stream fish

  Hideyuki Doi; Ryutei Inui; Yoshihisa Akamatsu; Kazuki Kanno; Hiroki Yamanaka; Teruhiko Takahara; Toshifumi Minamoto

  FRESHWATER BIOLOGY, Jan. 2017, Peer-reviewed

  
• Use of a Filter Cartridge for Filtration of Water Samples and Extraction of Environmental DNA

  Masaki Miya; Toshifumi Minamoto; Hiroki Yamanaka; Shin-ichiro Oka; Keiichi Sato; Satoshi Yamamoto; Tetsuya Sado; Hideyuki Doi

  JOVE-JOURNAL OF VISUALIZED EXPERIMENTS, Nov. 2016, Peer-reviewed, Invited

  
• Global patterns of conservation research importance in different countries of the world

  Hideyuki Doi; Teruhiko Takahara

  PEERJ, Jul. 2016, Peer-reviewed

  
• Use of environmental DNA to survey the distribution of an invasive submerged plant in ponds

  Ayaka Fujiwara; Saeko Matsuhashi; Hideyuki Doi; Satoshi Yamamoto; Toshifumi Minamoto

  FRESHWATER SCIENCE, Jun. 2016, Peer-reviewed

  
• Evaluation of the Environmental DNA Method for Estimating Distribution and Biomass of Submerged Aquatic Plants

  Saeko Matsuhashi; Hideyuki Doi; Ayaka Fujiwara; Sonoko Watanabe; Toshifumi Minamoto

  PLOS ONE, Jun. 2016, Peer-reviewed

  
• A novel environmental DNA approach to quantify the cryptic invasion of non-native genotypes

  Kimiko Uchii; Hideyuki Doi; Toshifumi Minamoto

  MOLECULAR ECOLOGY RESOURCES, Mar. 2016, Peer-reviewed

  
• A cross-system meta-analysis reveals coupled predation effects on prey biomass and diversity

  Izumi Katano; Hideyuki Doi; Britas Klemens Eriksson; Helmut Hillebrand

  OIKOS, Nov. 2015, Peer-reviewed

  
• Droplet Digital Polymerase Chain Reaction (PCR) Outperforms Real-Time PCR in the Detection of Environmental DNA from an Invasive Fish Species

  Hideyuki Doi; Teruhiko Takahara; Toshifumi Minamoto; Saeko Matsuhashi; Kimiko Uchii; Hiroki Yamanaka

  ENVIRONMENTAL SCIENCE & TECHNOLOGY, May 2015, Peer-reviewed

  
• Use of Droplet Digital PCR for Estimation of Fish Abundance and Biomass in Environmental DNA Surveys

  Hideyuki Doi; Kimiko Uchii; Teruhiko Takahara; Saeko Matsuhashi; Hiroki Yamanaka; Toshifumi Minamoto

  PLOS ONE, Mar. 2015, Peer-reviewed

  
• Effects of sample processing on the detection rate of environmental DNA from the Common Carp (Cyprinus carpio)

  Teruhiko Takahara; Toshifumi Minamoto; Hideyuki Doi

  BIOLOGICAL CONSERVATION, Mar. 2015, Peer-reviewed

  
• Radiocesium accumulation in the anuran frog, Rana tagoi tagoi, in forest ecosystems after the Fukushima Nuclear Power Plant accident

  Takahara, Teruhiko; Endo, Satoru; Takada, Momo; Oba, Yurika; Nursal, Wim Ikbal; Igawa, Takeshi; Doi, Hideyuki; Yamada, Toshihiro; Okuda, Toshinori

  Environmental Pollution, 2015, Peer-reviewed

  
• Effects of daily temperature fluctuation on the survival of carp infected with Cyprinid herpesvirus 3

  Teruhiko Takahara; Mie N. Honjo; Kimiko Uchii; Toshifumi Minamoto; Hideyuki Doi; Takafumi Ito; Zen'ichiro Kawabata

  AQUACULTURE, Sep. 2014, Peer-reviewed

  
• Stream grazers determine their crawling direction on the basis of chemical and particulate microalgal cues

  Izumi Katano; Hideyuki Doi

  PEERJ, Aug. 2014, Peer-reviewed

  
• Differences between domesticated Eurasian and Japanese indigenous strains of the common carp (Cyprinus carpio) in cortisol release following acute stress

  Teruhiko Takahara; Toshifumi Minamoto; Hideyuki Doi; Takafumi Ito; Zen'ichiro Kawabata

  ICHTHYOLOGICAL RESEARCH, Apr. 2014, Peer-reviewed

  
• Scientific Activity Is a Better Predictor of Nobel Award Chances than Dietary Habits and Economic Factors

  Hideyuki Doi; Alexandre Heeren; Pierre Maurage

  PLOS ONE, Mar. 2014, Peer-reviewed

  
• Feeding behavior of the copepod Temora turbinata: Clearance rate and prey preference on the diatom and microbial food web components in coastal area

  Kwang-Hyeon Chang; Hideyuki Doi; Yuichiro Nishibe; Gui-Sook Nam; Shin-Ichi Nakano

  Journal of Ecology and Environment, 2014

  
• Comment: “Four color issue” in ecology

  Doi H

  Japanese Journal of Ecology, 2014, Peer-reviewed

  
• Comment: Food web theories and mass extinction

  Doi H

  Japanese Journal of Ecology, 2014, Peer-reviewed

  
• Isotopic evidence for the spatial heterogeneity of the planktonic food webs in the transition zone between river and lake ecosystems

  Hideyuki Doi; Elena I. Zuykova; Shuichi Shikano; Eisuke Kikuchi; Hiroshi Ota; Natalia I. Yurlova; Elena Yadrenkina

  PEERJ, Dec. 2013, Peer-reviewed

  
• The "four-color issue" in ecology for considering ecosystem boundaries

  H. Doi

  Web Ecology, 28 Oct. 2013, Peer-reviewed

  
• Effects of biodiversity, habitat structure, and water quality on recreational use of rivers

  Hideyuki Doi; Izumi Katano; Junjiro N. Negishi; Seiji Sanada; Yuichi Kayaba

  Ecosphere, 23 Aug. 2013, Peer-reviewed

  
• Lack of Congruence in Species Diversity Indices and Community Structures of Planktonic Groups Based on Local Environmental Factors

  Hideyuki Doi; Kwang-Hyeon Chang; Yuichiro Nishibe; Hiroyuki Imai; Shin-ichi Nakano

  PLOS ONE, Jul. 2013, Peer-reviewed

  
• The discovery of species-abundance distribution in an ecological community

  Hideyuki Doi; Terutaka Mori

  OIKOS, Feb. 2013, Peer-reviewed

  
• Using Environmental DNA to Estimate the Distribution of an Invasive Fish Species in Ponds

  Teruhiko Takahara; Toshifumi Minamoto; Hideyuki Doi

  PLOS ONE, Feb. 2013, Peer-reviewed

  
• Different chemical cues originating from a shared predator induce common defense responses in two prey species

  Teruhiko Takahara; Hideyuki Doi; Yukihiro Kohmatsu; Ryohei Yamaoka

  ANIMAL COGNITION, Jan. 2013, Peer-reviewed

  
• Global meta-analysis for controlling factors on carbon stable isotope ratios of lotic periphyton

  Naoto F. Ishikawa; Hideyuki Doi; Jacques C. Finlay

  OECOLOGIA, Oct. 2012, Peer-reviewed

  
• Response of the Morus bombycis growing season to temperature and its latitudinal pattern in Japan

  Hideyuki Doi

  INTERNATIONAL JOURNAL OF BIOMETEOROLOGY, Sep. 2012, Peer-reviewed

  
• Inducible defense behavior of an anuran tadpole: cue-detection range and cue types used against predator

  Teruhiko Takahara; Yukihiro Kohmatsu; Atsushi Maruyama; Hideyuki Doi; Hiroki Yamanaka; Ryohei Yamaoka

  BEHAVIORAL ECOLOGY, Jul. 2012, Peer-reviewed

  
• Shorter Food Chain Length in Ancient Lakes: Evidence from a Global Synthesis

  Hideyuki Doi; M. Jake Vander Zanden; Helmut Hillebrand

  PLOS ONE, Jun. 2012, Peer-reviewed

  
• Resource productivity and availability impacts for food-chain length

  Hideyuki Doi

  ECOLOGICAL RESEARCH, May 2012, Peer-reviewed

  
• Spring phenology delays in an insular subtropical songbird: is response to climate change constrained by population size?

  Oscar Gordo; Hideyuki Doi

  JOURNAL OF ORNITHOLOGY, Apr. 2012, Peer-reviewed

  
• A perspective on match/mismatch of phenology in community contexts

  Takefumi Nakazawa; Hideyuki Doi

  OIKOS, Apr. 2012, Peer-reviewed

  
• Estimation of Fish Biomass Using Environmental DNA

  Teruhiko Takahara; Toshifumi Minamoto; Hiroki Yamanaka; Hideyuki Doi; Zen'ichiro Kawabata

  PLOS ONE, Apr. 2012, Peer-reviewed

  
• Trophic Position and Metabolic Rate Predict the Long-Term Decay Process of Radioactive Cesium in Fish: A Meta-Analysis

  Hideyuki Doi; Teruhiko Takahara; Kazuya Tanaka

  PLOS ONE, Jan. 2012, Peer-reviewed

  
• Drivers of population variability in phenological responses to climate change in Japanese birds

  Oscar Gordo; Hideyuki Doi

  CLIMATE RESEARCH, 2012, Peer-reviewed

  
• Grazing on Microcystis (Cyanophyceae) by testate amoebae with special reference to cyanobacterial abundance and physiological state

  Seiko Mizuta; Hiroyuki Imai; Kwang-Hyeon Chang; Hideyuki Doi; Yuichiro Nishibe; Shin-ichi Nakano

  LIMNOLOGY, Dec. 2011, Peer-reviewed

  
• N-15/N-14 ratios of amino acids as a tool for studying terrestrial food webs: a case study of terrestrial insects (bees, wasps, and hornets)

  Yoshito Chikaraishi; Nanako O. Ogawa; Hideyuki Doi; Naohiko Ohkouchi

  ECOLOGICAL RESEARCH, Jul. 2011, Peer-reviewed

  
• Host-parasite interactions and global climate oscillations

  Hideyuki Doi; Natalia I. Yurlova

  PARASITOLOGY, Jul. 2011, Peer-reviewed

  
• Host-parasite interactions and global climate oscillations

  Hideyuki Doi; Natalia I. Yurlova

  PARASITOLOGY, Jul. 2011, Peer-reviewed

  
• Consequent Effects of Parasitism on Population Dynamics, Food Webs, and Human Health Under Climate Change

  Hideyuki Doi; Natalia I. Yurlova

  AMBIO, May 2011, Peer-reviewed

  
• Response of the plankton community to herbicide application (triazine herbicide, simetryn) in a eutrophicated system: short-term exposure experiment using microcosms

  Kwang-Hyeon Chang; Masaki Sakamoto; Jin-Yong Ha; Yuichi Miyabara; Shin-ichi Nakano; Hideyuki Doi; Takayuki Hanazato

  LIMNOLOGY, Apr. 2011, Peer-reviewed

  
• Seasonally tracking vertical and horizontal distribution of unionid mussels (Pronodularia japanensis): implications for agricultural drainage management

  Junjiro N. Negishi; Hideyuki Doi; Izumi Katano; Yuichi Kayaba

  AQUATIC CONSERVATION-MARINE AND FRESHWATER ECOSYSTEMS, Jan. 2011, Peer-reviewed

  
• Similarity indices, ordination, and community analysis tests using the software R

  Doi H; Okamura H

  Japanese Journal of Ecology, 2011, Peer-reviewed

  
• Nitrogen and carbon isotope fractionations of zooplankton consumers in ponds: potential effects of seston C : N stoichiometry

  Hideyuki Doi; Kwang-Hyeon Chang; Shin-ichi Nakano

  MARINE AND FRESHWATER RESEARCH, 2011, Peer-reviewed

  
• Trophic niche breadth variability differs among three Neocalanus species in the subarctic Pacific Ocean

  Hideyuki Doi; Toru Kobari; Kayoko Fukumori; Yuichiro Nishibe; Shin-ichi Nakano

  JOURNAL OF PLANKTON RESEARCH, Dec. 2010, Peer-reviewed

  
• Stable isotopes indicate individual level trophic diversity in the freshwater gastropod Lymnaea stagnalis

  Hideyuki Doi; Natalia I. Yurlova; Eisuke Kikuchi; Shuichi Shikano; Elena N. Yadrenkina; Svetlana N. Vodyanitskaya; Elena I. Zuykova

  JOURNAL OF MOLLUSCAN STUDIES, Nov. 2010, Peer-reviewed

  
• Differences in nitrogen and carbon stable isotopes between planktonic and benthic microalgae

  Hideyuki Doi; Eisuke Kikuchi; Shuichi Shikano; Shigeto Takagi

  LIMNOLOGY, Aug. 2010, Peer-reviewed

  
• GLUTAMATE EXOCRINE DYNAMICS AUGMENTED BY PLASMA GLUTAMINE AND THE DISTRIBUTION OF AMINO ACID TRANSPORTERS OF THE RAT PANCREAS

  D. Fukushima; H. Doi; K. Fukushima; K. Katsura; N. Ogawa; S. Sekiguchi; K. Fujimori; A. Sato; S. Satomi; K. Ishida; K. Fukushima

  JOURNAL OF PHYSIOLOGY AND PHARMACOLOGY, Jun. 2010, Peer-reviewed

  
• Integrating elements and energy through the metabolic dependencies of gross growth efficiency and the threshold elemental ratio

  Hideyuki Doi; Mehdi Cherif; Tsubasa Iwabuchi; Izumi Katano; James C. Stegen; Maren Striebel

  OIKOS, May 2010, Peer-reviewed

  
• Shoreline bank construction modifies benthic-pelagic coupling of food webs

  Hideyuki Doi; Kwang-Hyeon Chang; Takamitsu Ando; Hiroyuki Imai; Shin-ichi Nakano

  ECOLOGICAL ENGINEERING, Apr. 2010, Peer-reviewed

  
• ESTIMATING ISOTOPE FRACTIONATION BETWEEN CERCARIAE AND HOST SNAIL WITH THE USE OF ISOTOPE MEASUREMENT DESIGNED FOR VERY SMALL ORGANISMS

  Hideyuki Doi; Natalia I. Yurlova; Svetlana N. Vodyanitskaya; Gen Kanaya; Shuichi Shikano; Eisuke Kikuchi

  JOURNAL OF PARASITOLOGY, Apr. 2010, Peer-reviewed

  
• Macro-scale investigation of climate change effect on plant phenological timings using the phenological dataset of japan metrological agency

  Doi H; Takahashi M

  Japanese Journal of Ecology, 2010, Peer-reviewed

  
• Genetic diversity increases regional variation in phenological dates in response to climate change

  Hideyuki Doi; Mayumi Takahashi; Izumi Katano

  GLOBAL CHANGE BIOLOGY, Jan. 2010, Peer-reviewed

  
• Dispersal, connectivity, and local conditions determine zooplankton community composition in artificially connected ponds

  Hideyuki Doi; Kwang-Hyeon Chang; Shin-ichi Nakano

  AQUATIC BIOLOGY, 2010, Peer-reviewed

  
• Feeding habits of omnivorous Asplanchna: comparison of diet composition among Asplanchna herricki, A. priodonta and A. girodi in pond ecosystems

  Kwang-Hyeon Chang; Hideyuki Doi; Yuichiro Nishibe; Shin-ichi Nakano

  JOURNAL OF LIMNOLOGY, 2010, Peer-reviewed

  
• 土砂還元によるダム下流域の修復効果検証のための指標種の抽出

  片野泉; 根岸淳二郎; 皆川朋子; 土居秀幸; 萱場祐一

  河川技術論文集, 2010, Peer-reviewed

  
• Upstream resource abundance determines the food searching behavior of a stream grazer: Effect of microalgal cues

  Izumi Katano; Hideyuki Doi; Tadashi Oishi

  LIMNOLOGY AND OCEANOGRAPHY, Jul. 2009, Peer-reviewed

  
• Conservation and research in extreme environments

  Hideyuki Doi; Eisuke Kikuchi

  FRONTIERS IN ECOLOGY AND THE ENVIRONMENT, Jun. 2009, Peer-reviewed

  
• Macroalgae and seagrass contribution to gastropods in sub-tropical and temperate tidal flats

  Hideyuki Doi; Masatoshi Matsumasa; Mamoru Fujikawa; Keiich Kanou; Takao Suzuki; Eisuke Kikuchi

  JOURNAL OF THE MARINE BIOLOGICAL ASSOCIATION OF THE UNITED KINGDOM, Mar. 2009, Peer-reviewed

  
• Stable isotope characterization of fluids from the Lake Chany complex, western Siberia, Russian Federation

  C. Mizota; H. Doi; E. Kikuchi; S. Shikano; T. Kakegawa; N. Yurlova; A. K. Yurlov

  APPLIED GEOCHEMISTRY, Feb. 2009, Peer-reviewed

  
• Superiority of Fresh Islets Compared With Cultured Islets

  H. Takahashi; M. Goto; N. Ogawa; Y. Saito; K. Fujimori; Y. Kurokawa; H. Doi; S. Satomi

  TRANSPLANTATION PROCEEDINGS, Jan. 2009, Peer-reviewed

  
• Spatial patterns of autochthonous and allochthonous resources in aquatic food webs

  Hideyuki Doi

  POPULATION ECOLOGY, Jan. 2009, Peer-reviewed

  
• Resource availability and ecosystem size predict food-chain length in pond ecosystems

  Hideyuki Doi; Kwang-Hyeon Chang; Takamitsu Ando; Ippei Ninomiya; Hiroyuki Imai; Shin-ichi Nakano

  OIKOS, Jan. 2009, Peer-reviewed

  
• Contribution of organic matter sources to cyprinid fishes in the Chany Lake-Kargat River estuary, western Siberia

  Gen Kanaya; Elena N. Yadrenkina; Elena I. Zuykova; Eisuke Kikuchi; Hideyuki Doi; Shuichi Shikano; Chitoshi Mizota; Natalia I. Yurlova

  MARINE AND FRESHWATER RESEARCH, 2009, Peer-reviewed

  
• Spatial and temporal distribution of zooplankton communities of coastal marine waters receiving different human activities (fish and pearl oyster farmings)

  Kwang-Hyeon Chang; Hideyuki Doi; Yuichiro Nishibe; Yumiko Obayashi; Shin-ichi Nakano

  The Open Marine Biology Journal, 2009, Peer-reviewed

  
• Photosynthetic property and primary production of phytoplankton in sublittoral sand bank area in the Seto Inland Sea, Japan

  Motomi Genkai-Kato; Miyuki Onishi; Hideyuki Doi; Kentaro Nozaki; Kenji Yoshino; Hitoshi Miyasaka; Koji Omori

  ECOLOGICAL RESEARCH, Nov. 2008, Peer-reviewed

  
• Longitudinal changes in zooplankton distribution below a reservoir outfall with reference to river planktivory

  Kwang-Hyeon Chang; Hideyuki Doi; Hiroyuki Imai; Fusako Gunji; Shin-ichi Nakano

  LIMNOLOGY, Aug. 2008, Peer-reviewed

  
• Bivalve tissue as a carbon and nitrogen isotope baseline indicator in coastal ecosystems

  Kayoko Fukumori; Misa Oi; Hideyuki Doi; Daisuke Takahashi; Noboru Okuda; Todd W. Miller; Michinobu Kuwae; Hitoshi Miyasaka; Motomi Genkai-Kato; Yoshitsugu Koizumi; Koji Omori; Hidetaka Takeoka

  ESTUARINE COASTAL AND SHELF SCIENCE, Aug. 2008, Peer-reviewed

  
• Delayed phenological timing of dragonfly emergence in Japan over five decades

  Hideyuki Doi

  BIOLOGY LETTERS, Aug. 2008, Peer-reviewed

  
• Latitudinal patterns in the phenological responses of leaf colouring and leaf fall to climate change in Japan

  Hideyuki Doi; Mayumi Takahashi

  GLOBAL ECOLOGY AND BIOGEOGRAPHY, Jul. 2008, Peer-reviewed

  
• Distribution patterns of stream grazers and relationships between grazers and periphyton at multiple spatial scales

  Hideyuki Doi; Izumi Katano

  JOURNAL OF THE NORTH AMERICAN BENTHOLOGICAL SOCIETY, Jun. 2008, Peer-reviewed

  
• Heterogeneous intra-annual climatic changes drive different phenological responses at two trophic levels

  Hideyuki Doi; Oscar Gordo; Izumi Katano

  CLIMATE RESEARCH, Jun. 2008, Peer-reviewed

  
• Drifting plankton from a reservoir subsidize downstream food webs and alter community structure

  Hideyuki Doi; Kwang-Hyeon Chang; Takamitsu Ando; Hiroyuki Imai; Shin-ichi Nakano; Akio Kajimoto; Izumi Katano

  OECOLOGIA, May 2008, Peer-reviewed

  
• Relationships between length and weight of freshwater macroinvertebrates in Japan

  Hitoshi Miyasaka; Motomi Genkai-Kato; Yo Miyake; Daisuke Kishi; Izumi Katano; Hideyuki Doi; Shin-ya Ohba; Naotoshi Kuhara

  LIMNOLOGY, Apr. 2008, Peer-reviewed

  
• Phenological timings of leaf budburst with climate change in Japan

  Hideyuki Doi; Izumi Katano

  AGRICULTURAL AND FOREST METEOROLOGY, Mar. 2008, Peer-reviewed

  
• Influence of a current style of culture on the quality of isolated pancreatic islets

  H. Takahashi; M. Goto; N. Ogawa; Y. Saitoh; K. Fujimori; Y. Kurokawa; H. Doi; S. Satomi

  TRANSPLANTATION PROCEEDINGS, Mar. 2008, Peer-reviewed

  
• Parasite-induced changes in nitrogen isotope signatures of host tissues

  Hideyuki Doi; Natalia I. Yurlova; Svetlana N. Vodyanitskaya; Eisuke Kikuchi; Shuichi Shilkano; Elena N. Yadrenkina; Elena I. Zuykova

  JOURNAL OF PARASITOLOGY, Feb. 2008, Peer-reviewed

  
• Food sources of the pearl oyster in coastal ecosystems of Japan: Evidence from diet and stable isotope analysis

  Kayoko Fukumori; Misa Oi; Hideyuki Doi; Noboru Okuda; Hitomi Yamaguchi; Michinobu Kuwae; Hitoshi Miyasaka; Kenji Yoshino; Yoshitsugu Koizumi; Koji Omori; Hidetaka Takeoka

  ESTUARINE COASTAL AND SHELF SCIENCE, Feb. 2008, Peer-reviewed

  
• Attached microalgae contribute to planktonic food webs in bays with fish and pearl oyster farms

  Hideyuki Doi; Kwang-Hyeon Chang; Yumiko Obayashi; Mizuho Yoshihara; Mary Shime; Takako Yamamoto; Yuichiro Nishibe; Shin-ichi Nakano

  MARINE ECOLOGY PROGRESS SERIES, 2008, Peer-reviewed

  
• Changes in periphyton abundance and community structure with the dispersal of a caddisfly grazer, Micrasema quadriloba

  Izumi Katano; Hideyuki Doi; Akiko Houki; Yu Isobe; Tadashi Oishi

  LIMNOLOGY, Dec. 2007, Peer-reviewed

  
• Winter flowering phenology of Japanese apricot Prunus mume reflects climate change across Japan

  Hideyuki Doi

  CLIMATE RESEARCH, Jul. 2007, Peer-reviewed

  
• Stream Macroinvertebrate Community Affected by Point-Source Metal Pollution

  Doi H; Takagi A; Kikuchi E

  International Review of Hydrobiology, Jun. 2007, Peer-reviewed

  
• Development of a novel ELISA for detection of anti-A and anti-B antibodies in recipients of ABO-incompatible living donor liver grafts

  Akefumi Satoh; Naoki Kawagishi; Masayoshi Minegishi; Hiroyuki Takahashi; Yorihiro Akamatsu; Hideyuki Doi; Susumu Satomi

  TOHOKU JOURNAL OF EXPERIMENTAL MEDICINE, Apr. 2007, Peer-reviewed

  
• Stream macroinvertebrate community affected by point-source metal pollution

  Hideyuki Doi; Atsushi Takagi; Eisuke Kikuchi

  INTERNATIONAL REVIEW OF HYDROBIOLOGY, 2007, Peer-reviewed

  
• Effects of reach-scale canopy cover on trophic pathways of caddisfly larvae in a Japanese mountain stream

  Hideyuki Doi; Yasuhiro Takemon; Taichi Ohta; Yuko Ishida; Eisuke Kikuchi

  MARINE AND FRESHWATER RESEARCH, 2007, Peer-reviewed

  
• Changes in carbon and nitrogen stable isotopes of chironomid larvae during growth, starvation and metamorphosis

  Hideyuki Doi; Eisuke Kikuchi; Shigeto Takagi; Shuichi Shikano

  RAPID COMMUNICATIONS IN MASS SPECTROMETRY, 2007, Peer-reviewed

  
• 支川流入がダム下流の河床環境と底生動物群集に与える影響：近畿8ダム河川間での比較

  片野 泉; 土居 秀幸; 根岸 淳二郎; 皆川 朋子; 萱場 祐一

  日本陸水学会 講演要旨集, 2007

  
• 成長・絶食・変態による水生昆虫の炭素・窒素安定同位体比の変化

  土居 秀幸; 菊地 永祐; 高木 茂人; 鹿野 秀一

  日本陸水学会 講演要旨集, 2007

  
• Spatial changes in carbon and nitrogen stable isotopes of the plankton food web in a saline lake ecosystem

  Hideyuki Doi; Elena I. Zuykova; Eisuke Kikuchi; Shuichi Shikano; Keiichi Kanou; Natalia Yurlova; Elena Yadrenkina

  HYDROBIOLOGIA, Nov. 2006, Peer-reviewed

  
• The zooplankton of Lake Chany, West Siberia, Russia

  EI Zuykova; H Doi; E Kikuchi; S Shikano; N Yurlova

  JOURNAL OF FRESHWATER ECOLOGY, Mar. 2006, Peer-reviewed

  
• The use of algal-mat habitats by aquatic insect grazers: Effects of microalgal cues

  Hideyuki Doi; Izumi Katano; Eisuke Kikuchi

  Basic and Applied Ecology, 01 Mar. 2006, Peer-reviewed

  
• Selective assimilation by deposit feeders: Experimental evidence using stable isotope ratios

  Hideyuki Doi; Eisuke Kikuchi; Shigeto Takagi; Shuichi Shikano

  Basic and Applied Ecology, 01 Mar. 2006, Peer-reviewed

  
• The use of algal-mat habitats by aquatic insect grazers: Effects of microalgat cues

  H Doi; Katano, I; E Kikuchi

  BASIC AND APPLIED ECOLOGY, 2006, Peer-reviewed

  
• Selective assimilation by deposit feeders: Experimental evidence using stable isotope ratios

  H Doi; E Kikuchi; S Takagi; S Shikano

  BASIC AND APPLIED ECOLOGY, 2006, Peer-reviewed

  
• Contribution of chemoautotrophic production to freshwater macroinvertebrates in a headwater stream using multiple stable isotopes

  Hideyuki Doi; Atsushi Takagi; Chitoshi Mizota; Jun-ichi Okano; Shin-ichi Nakano; Eisuke Kikuchi

  INTERNATIONAL REVIEW OF HYDROBIOLOGY, 2006, Peer-reviewed

  
• グレイザーの餌探索行動における付着藻類キュー利用の可能性

  片野 泉; 土居 秀幸

  日本陸水学会 講演要旨集, 2006

  
• 空間スケール階層間における藻類食者トップダウン効果検出の違い

  土居 秀幸; 片野 泉

  日本陸水学会 講演要旨集, 2006

  
• 愛媛県鹿野川ダム湖における植物プランクトン群集の現存量・組成といくつかの環境要因の季節動態

  今井 洋幸; 梶本 章生; 張 光玹; 土居 秀幸; 高山 弘太郎; 中野 伸一

  日本陸水学会 講演要旨集, 2006

  
• 強酸性湖潟沼におけるサンユスリカ幼虫の二次生産

  高木 茂人; 菊地 永祐; 土居 秀幸; 鹿野 秀一

  日本陸水学会 講演要旨集, 2006

  
• 近接したため池群におけるプランクトン群集の種組成および食物網構造動態解析

  張 光玄; 土居 秀幸; 西部 裕一郎; 中野 伸一

  日本陸水学会 講演要旨集, 2006

  
• Interannual variations of limnological and ecological characteristics in acidic Lake Katanuma

  Shikano S; Kikuchi E; Takagi S; Doi H

  Korean Journal of Limnology, Dec. 2005, Peer-reviewed

  
• Swimming behaviour of Chironomus acerbiphilus larvae in Lake Katanuma

  S Takagi; E Kikuchi; H Doi; S Shikano

  HYDROBIOLOGIA, Oct. 2005, Peer-reviewed

  
• Swimming Behaviour of Chironomus acerbiphilus Larvae in Lake Katanuma

  Takagi S; Kikuchi E; Doi H; Shikano S

  Hydrobiologia, Oct. 2005, Peer-reviewed

  
• Food selectivity on microalgae by Cheumatopsyche spp. (Trichoptera, Hydropsychidae) in a reservoir-stream system

  Takamitsu Ando; Hiroyuki Imai; Seiko Mizuta; Hideyuki Doi; Yo Miyake; Shin-ichi Nakano

  Proceedings of the Second Japan-Korea Joint Symposium on Limnology, Sep. 2005, Peer-reviewed

  
• Spatial shifts in food sources for macrozoobenthos in an estuarine ecosystem: Carbon and nitrogen stable isotope analyses

  H Doi; M Matsumasa; T Toya; N Satoh; C Mizota; Y Maki; E Kikuchi

  ESTUARINE COASTAL AND SHELF SCIENCE, Aug. 2005, Peer-reviewed

  
• Carbon stable isotope ratios of phytoplankton and benthic diatoms in Lake Katanuma with reference to those of other lakes

  Doi H; Kikuchi E; Takagi S; Shikano S

  Korean Journal of Limnology, Apr. 2005, Peer-reviewed

  
• Microalgal cue for the stream grazer Glossosoma sp.

  Katano Izumi; Doi Hideyuki

  Abstracts of the Annual Meeting of the Ecological Society of Japan, 2005

  
• Does a grazer Glossosoma sp. discriminate the chemical cue from periphyton ?

  KATANO Izumi; DOI Hideyuki

  Proceedings of General Assembly of The Japanese Society of Limnology, 2005

  
• Carbon, nitrogen, and sulfur isotope changes and hydro-geological processes in a saline lake chain

  H Doi; E Kikuchi; C Mizota; N Satoh; S Shikano; N Yurlova; E Yadrenkina; E Zuykova

  HYDROBIOLOGIA, Nov. 2004, Peer-reviewed

  
• Volcanic heat flux and short-term holomixis during the summer stratification period in a crater lake

  S Shikano; E Kikuchi; S Takagi; H Doi

  LIMNOLOGY AND OCEANOGRAPHY, Nov. 2004, Peer-reviewed

  
• A study of the nitrogen stable isotope dynamics of phytoplankton in a simple natural ecosystem

  H Doi; E Kikuchi; S Shikano; S Takagi

  AQUATIC MICROBIAL ECOLOGY, Sep. 2004, Peer-reviewed

  
• Preliminary studies on carbon and nitrogen stable isotope ratios analysis of food web in Lake Chany of Western Siberia

  Kikuchi E; Doi H; Shikano S; Yurlova N; Yadrenkina E; Zuykova E; Ota H

  Research and Education Center for Inlandwater Environment Shinshu University, Feb. 2004, Peer-reviewed

  
• Seasonal changes of carbon and nitrogen stable isotope ratios for dominant species: chironomid larvae, phytoplankton, and benthic diatom inhabiting strongly acidic Lake Katanuma

  Doi H; Kikuchi E; Takagi S; Shikano S

  Research and Education Center for Inlandwater Environment Shinshu University, Feb. 2004, Peer-reviewed

  
• Seasonal dynamics of carbon stable isotope ratios of particulate organic matter and benthic diatoms in strongly acidic Lake Katanuma

  H Doi; E Kikuchi; S Hino; T Itoh; S Takagi; S Shikano

  AQUATIC MICROBIAL ECOLOGY, Aug. 2003, Peer-reviewed

  
• Isotopic (delta C-13) evidence for the autochthonous origin of sediment organic matter in the small and acidic Lake Katanuma, Japan

  H Doi; E Kikuchi; S Hino; T Itoh; S Takagi; S Shikano

  MARINE AND FRESHWATER RESEARCH, 2003, Peer-reviewed

  

Misc.

• Changes in foodweb descibed by stable isotope ratio of carbon and nitrogen along the downstream gradient: an example in Niyodo river.

  Kamauchi Hiromitsu; Arai Hirotsugu; Fukushima Keitaro; Fukuzawa Karibu; Doi Hideyuki; Tominaga Koji; Kondo Kazuma; Tokuchi Naoko

  The Japanese Forest Society Congress, 2009

  
• Detection of freshwater mussels (Sinanodonta spp.) in artificial ponds through environmental DNA: a comparison with traditional hand collection methods (vol 21, pg 59, 2020)

  Daisuke Togaki; Hideyuki Doi; Izumi Katano

  LIMNOLOGY, Apr. 2020

  
• Note on important and novel findings : Detection of freshwater mussels (Sinanodonta spp.) in artificial ponds through environmental DNA : a comparison with traditional hand collection methods

  Togaki Daisuke; Doi Hideyuki; Katano Izumi

  Limnology, Jan. 2020

  
• 河川生態系の調査・分析方法（分担執筆）

  土居 秀幸; 太田 民久; 石川 尚人

  2019

  
• 海底下微生物の全球的な多様性分布と規定環境要因

  星野辰彦; 土居秀幸; XIAO Nan; 諸野祐樹; 浦本豪一郎; 稲垣史生

  日本地質学会学術大会講演要旨, 2018

  
• Issues and prospects of environmental DNA monitoring methods

  MINAMOTO Toshifumi; UCHII Kimiko; TAKAHARA Teruhiko; DOI Hideyuki

  Environmental Conservation Engineering, Dec. 2017, Invited

  
• FUNDAMENTAL STUDY ON ESTIMATING ABUNDANCE OF STREAM FISH USING ENVIRONMENTAL DNA ANALYSIS

  赤松 良久; 乾 隆帝; 一松 晃弘; 河野 誉仁; 土居 秀幸

  水工学論文集 Annual journal of Hydraulic Engineering, JSCE, 2017

  
• 環境DNAを用いたニホンザリガニ生息場の推定における季節影響

  池田幸資; 土居秀幸; 田中一典; 川井唯史; 荒木仁志; 高原輝彦; 源利文; 鈴木透; 小泉逸郎; 根岸淳二郎

  土木学会年次学術講演会講演概要集(CD-ROM), 2016

  
• 安定同位体を用いた餌資源・食物網調査法

  土居 秀幸; 兵藤 不二夫; 石川 尚人

  2016

  
• Environmental DNA analysis: A new monitoring tool for aquatic species

  Kimiko Uchii; Toshifumi Minamoto; Hideyuki Doi; Teruhiko Takahara; Hiroki Yamanaka; Izumi Katano

  Japanese Journal of Ecology, 2016

  
• Environmental DNA analysis in field research

  Hiroki Yamanaka; Toshifumi Minamoto; Teruhiko Takahara; Kimiko Uchii; Hideyuki Doi

  Japanese Journal of Ecology, 2016, Peer-reviewed

  
• Current state of biomonitoring method using environment DNA analysis

  Teruhiko Takahara; Hiroki Yamanaka; Toshifumi Minamoto; Hideyuki Doi; Kimiko Uchii

  Japanese Journal of Ecology, 2016, Peer-reviewed

  
• Towards the further developments of environmental DNA analysis

  Toshifumi Minamoto; Kimiko Uchii; Hiroki Yamanaka; Teruhiko Takahara; Izumi Katano; Hideyuki Doi

  Japanese Journal of Ecology, 2016

  
• Preliminary experiment for detection method of fish inhabiting agricultural drainage canals using environmental DNA

  KOIZUMI Noriyuki; TAKAHARA Teruhiko; MINAMOTO Toshifumi; DOI Hideyuki; MORI Atsushi; WATANABE Keiji; TAKEMURA Takeshi

  Irrigation, Drainage and Rural Engineering Journal, Jun. 2015, Peer-reviewed

  
• Longitudinal macroinvertebrate organization over contrasting discontinuities: effects of a dam and a tributary

  Izumi Katano; Junjiro N. Negishi; Tomoko Minagawa; Hideyuki Doi; Yoichi Kawaguchi; Yuichi Kayaba

  JOURNAL OF THE NORTH AMERICAN BENTHOLOGICAL SOCIETY, Jun. 2009

  
• ダム下流における支川の効果を考える：供給土砂量の異なる２河川間の比較

  片野 泉; 佐川 志朗; 真田 誠至; 土居 秀幸; 根岸 淳二郎; 皆川 朋子; 萱場 祐一

  日本陸水学会 講演要旨集, 2008

  
• Researcher to field: Estimating stream food webs using stable isotopes: trophic pathways to invertebrates under a canopy-covered stream

  土居 秀幸

  河川, Nov. 2007

  
• Analysis of food sources for Chironomus acerbiphilus larvae in strongly acidic Lake Katanuma

  DOI Hideyuki; KIKUCHI Eisuke

  Japanese journal of limnology, 30 Jun. 2002

  
• Dynamics of Stable Isotope Ratios of Diatoms

  DOI Hideyuki

  Radioisotopes, 15 Feb. 2002

  
• Carbon and nitrogen stable isotope ratios analysis of food sources for Chironomus acerbiphilus larvae (Diptera Chironomidae) in strongly acidic Lake Katanuma

  Hideyuki DOI; Eisuke KIKUCHI; Shuichi SHIKANO

  RADIOISOTOPES, 2001

  

Awards

• 07 Apr. 2023

  PLOS ONE Long Service Award

  Publisher

  Hideryuki Dioi
• 08 Mar. 2022

  村尾育英会　学術賞
• 28 Jul. 2021

  兵庫県立大学最優秀研究活動賞
• 28 Oct. 2020

  兵庫県立大学　研究活動特別賞
• 16 Mar. 2010

  第14回日本生態学会宮地賞
• 01 Mar. 2021

  Deep Life Paper Awards 2020（International Center for Deep Life Investigation）
• 10 Mar. 2005

  青葉理学振興会賞
• 25 Mar. 2005

  東北大学生命科学研究科長賞
• 12 Nov. 2011

  信州フィールド賞（信州大学）
• 11 Sep. 2016

  第16回吉村賞（日本陸水学会）
• 31 Aug. 2018

  クリタ水・環境科学研究優秀賞（クリタ水・環境科学振興財団）

External funds: Kakenhi

• Detection of the whole biota with environmental DNA measured PCR-free ultra-deep whole genome sequencing

  Grant-in-Aid for Challenging Research (Pioneering)

  Medium-sized Section 64:Environmental conservation measure and related fields

  University of Hyogo

  土居 秀幸

  From 30 Jun. 2022, To 31 Mar. 2026, Granted

  生物調査;環境DNA;全ゲノムシークエンス

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-22K18429/
• 河川の生物多様性をはぐくむキーハビタット・河床間隙域を環境DNAで評価する

  Grant-in-Aid for Scientific Research (C)

  Basic Section 64040:Social-ecological systems-related

  Nara Women's University

  片野 泉

  From 01 Apr. 2022, To 31 Mar. 2025, Granted

  環境DNA;河床間隙

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-22K12461/
• 湖沼生態系への温暖化対策の影響解明に向けた環境DNAによる新たな評価手法の構築

  Grant-in-Aid for Scientific Research (C)

  Basic Section 63040:Environmental impact assessment-related

  Matsuyama University

  槻木 玲美

  From 01 Apr. 2021, To 31 Mar. 2024, Granted

  近過去;環境DNA;温暖化;湖沼;動物プランクトン;琵琶湖;寄生者;植物プランクトン;環境変化;微生物

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-21K12273/
• 堆積物コアDNAを用いた海跡湖の近過去魚類群集と環境変遷との関係解明

  Grant-in-Aid for Scientific Research (B)

  Basic Section 64040:Social-ecological systems-related

  Shimane University

  高原 輝彦

  From 01 Apr. 2021, To 31 Mar. 2024, Granted

  環境DNA;海跡湖;魚類メタバーコーディング;山陰;堆積物コア;環境DNAメタバーコーディング;種特異的検出;堆積物コアDNA;宍道湖;汽水湖;魚介類;水草;メタバーコーディング;魚類群集

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-21H03649/
• Establishment of key marker dataset of Beppu Bay sediments for ratification of the Anthropocene GSSP

  Grant-in-Aid for Scientific Research (B)

  Basic Section 17030:Human geosciences-related

  Ehime University

  加 三千宣

  From 01 Apr. 2021, To 31 Mar. 2024, Granted

  人新世;標準模式地;別府湾堆積物;環境DNA;GSSP;放射性核種;DNA層序;渦鞭毛藻

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-21H01170/
• 魚類の成長ステージを把握する環境RNA手法の開発：ニホンウナギをモデルとして

  Grant-in-Aid for Challenging Research (Exploratory)

  Medium-sized Section 40:Forestry and forest products science, applied aquatic science, and related fields

  Shimane University

  高原 輝彦

  From 30 Jul. 2020, To 31 Mar. 2023, Granted

  環境RNA;環境DNA;ニホンウナギ;性成熟;黄ウナギ;銀ウナギ;変態

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-20K21335/
• Analysis of biological responses tol toxicity in model organisms using environmental RNA.

  Grant-in-Aid for Challenging Research (Exploratory)

  Medium-sized Section 64:Environmental conservation measure and related fields

  University of Hyogo

  Doi Hideyuki

  From 28 Jun. 2019, To 31 Mar. 2021, Project Closed

  環境RNA;環境DNA;毒性;遺伝子発現;RNAseq;RNシークエンス;トランスクリプトーム;毒性試験;生態毒性

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-19K22934/
• Reconstruction of Past Fish Communities Using eDNA Metabarcoding in Coastal Sediment Cores

  Grant-in-Aid for Scientific Research (B)

  Basic Section 63040:Environmental impact assessment-related

  University of Hyogo

  Hideyuki Doi

  From 01 Apr. 2019, To 31 Mar. 2022, Project Closed

  環境DNA;堆積物;海洋;魚類;メタバーコーディング;近過去復元;哺乳類;環境影響調査

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-19H04284/
• A new environmental DNA analysis to overcome inhibition: construction of a Biomass estimation equation with inhibition factors

  Grant-in-Aid for Scientific Research (C)

  Basic Section 64010:Environmental load and risk assessment-related

  Nara Women's University

  Izumi Katano

  From 01 Apr. 2018, To 31 Mar. 2022, Project Closed

  環境DNA;泥;細菌;植物プランクトン;有機物;POM;PIM;TP;TN;DOC;クロロフィル;細菌数;ゼブラフィッシュ;生物多様性保全;水質

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-18K11678/
• Reconstruction of abundance of small pelagic species using sedimentary DNA

  Grant-in-Aid for Challenging Research (Exploratory)

  Ehime University

  Kuwae Michinobu

  From 30 Jun. 2017, To 31 Mar. 2020, Project Closed

  環境DNA;海洋堆積物;魚類個体数;長期動態;魚類;別府湾堆積物;イワシ類;マアジ;有用魚種;堆積物;別府湾

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-17K20045/
• Development of prediction method for mass death of fish by using eRNA and stress hormone

  Grant-in-Aid for Scientific Research (C)

  Shimane University

  Teruhiko Takahara

  From 01 Apr. 2017, To 31 Mar. 2020, Project Closed

  環境DNA;環境RNA;ストレスホルモン;水生動物;コルチゾール;環境mRNA;環境DNAメタバーコーディング;宍道湖;DNA断片長;魚介類;大量死;環境技術;環境分析;環境変動;生態学

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-17K00581/
• Empirical Study on Sustainable Integrated Sediment Management for River Basin through the Restoration of Sound Sediment Transport System

  Grant-in-Aid for Scientific Research (B)

  Yamaguchi University

  Yoshihisa Akamatsu

  From 01 Apr. 2017, To 31 Mar. 2020, Project Closed

  通砂;生態系モデル;河床変動;UAV;環境DNA;総合土砂管理;流域;ダム通砂;河床変動モデル;流域総合土砂管理;水工水理学;環境水理学

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-17H03314/
• The effects of chemical-communication network in freshwater ecosystem on adaptation evolution of prey species and a community

  Grant-in-Aid for Young Scientists (B)

  Shimane University

  Teruhiko Takahara

  From 01 Apr. 2015, To 31 Mar. 2017, Project Closed

  オタマジャクシ;化学シグナル;ケミカルコミュニケーション;捕食ー被食関係;水圏生態系

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-15K18576/
• Environmental DNA methods for muddy water to develop the noninvasive investigation on organisms in the wetlands

  Grant-in-Aid for Scientific Research (C)

  Nara Women's University;University of Hyogo

  Izumi Katano

  From 01 Apr. 2015, To 31 Mar. 2018, Project Closed

  水生生物;泥;有機物;ため池;湿地;河川

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-15K00596/
• Stoichiometric effects of Light and nutrient balance on aquatic communities: field tests with large manipulation experiments in North America

  Grant-in-Aid for Scientific Research (A)

  Tohoku University

  Urabe Jotaro

  From 01 Apr. 2015, To 31 Mar. 2018, Project Closed

  生物群集;湖沼生態系;操作実験;食物連鎖;地球環境変化;化学量論;プランクトン;水草;生態系;湖沼;食物網;生物生産;光;栄養塩;ストイキオメトリー

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-15H02642/
• Non-invasive monitoring and biomass estimation of salmonid fish using environmental DNA

  Grant-in-Aid for Challenging Exploratory Research

  Hokkaido University

  Hitoshi ARAKI

  From 01 Apr. 2014, To 31 Mar. 2017, Project Closed

  環境DNA;サケ科魚類;モニタリング;サケ;定量;生物量;環境DNA検出;飼育実験;野外調査;国際情報交換

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-26640136/
• Spatial hierarchy for community and ecosystem studies using the ponds on the islands

  Grant-in-Aid for Young Scientists (B)

  Hiroshima University

  HIDEYUKI DOI

  From 01 Apr. 2012, To 31 Mar. 2015, Project Closed

  生物群集;水域生態系;ため池;環境DNA;群集生態学;食物網;生態学;外来種

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-24770022/

Education

Teaching subject(s)

• From 01 Apr. 2023, To 31 Mar. 2024

  Biosphere Informatics

  3224, Fall, Graduate School of Informatics, 2
• From 01 Apr. 2023, To 31 Mar. 2024

  Bioresource and Environmental Informatics II

  6807, Fall, Faculty of Agriculture, 2
• From 01 Apr. 2023, To 31 Mar. 2024

  Bioresource and Environmental Informatics I

  6805, Spring, Faculty of Agriculture, 2
• From 01 Apr. 2023, To 31 Mar. 2024

  Animal Science

  5699, Spring, Faculty of Agriculture, 2
• From 01 Apr. 2023, To 31 Mar. 2024

  Outline of Bioresource Science A

  5112, Spring, Faculty of Agriculture, 2

Administration

Faculty management (title, position)

• From 01 Apr. 2023, To 31 Mar. 2024

  評価・広報委員会　副委員長