Basic Information

Faculty

• 医学部

Academic Degree

• 修士（教育学）(東京学芸大学)
• 博士（数理学）(九州大学)

Research History

• Kyoto University

ID,URL

• J-Global ID

  201401032678052822

researchmap URL

• https://researchmap.jp/7000008047

Research

Research Topics, Overview of the research

• Research Topics

  Development of analytical method for highly polymorphic genomic region.
  Construction of AI based analysis system for rare diseases data on integrated registries.

Research Areas

• Life sciences, Genomics

Papers

• Genomic and transcriptomic profiling of pre- and postneoadjuvant chemotherapy triple negative breast cancer tumors.

  Tomomi Nishimura; Ravi Velaga; Norikazu Masuda; Kosuke Kawaguchi; Shuji Kawaguchi; Masahiro Takada; Yurina Maeshima; Sunao Tanaka; Yuichiro Kikawa; Takayuki Kadoya; Hiroko Bando; Rikiya Nakamura; Yutaka Yamamoto; Takayuki Ueno; Hiroyuki Yasojima; Hiroshi Ishiguro; Satoshi Morita; Shinji Ohno; Hironori Haga; Fumihiko Matsuda; Seishi Ogawa; Masakazu Toi

  Cancer science, 07 Oct. 2024, Peer-reviewed

  Access this paper :

  
• Identification of epistatic SNP combinations in rheumatoid arthritis using LAMPLINK and Japanese cohorts.

  Mio Shibata; Aika Terada; Takahisa Kawaguchi; Yoichiro Kamatani; Daigo Okada; Kazuhisa Nagashima; Koichiro Ohmura; Fumihiko Matsuda; Shuji Kawaguchi; Jun Sese; Ryo Yamada

  Journal of human genetics, 16 Jul. 2024, Peer-reviewed, Corresponding author

  
• Proteogenomics in cerebrospinal fluid and plasma reveals new biological fingerprint of cerebral small vessel disease.

  Stephanie Debette; Ilana Caro; Daniel Western; Shinichi Namba; Na Sun; Shuji Kawaguchi; Yunye He; Masashi Fujita; Gennady Roshchupkin; Tim D'Aoust; Marie-Gabrielle Duperron; Murali Sargurupremraj; Ami Tsuchida; Masaru Koido; Marziehsadat Ahmadi; Chengran Yang; Jigyasha Timsina; Laura Ibanez; Koichi Matsuda; Yutaka Suzuki; Yoshiya Oda; Akinori Kanai; Pouria Jandaghi; Hans Markus Munter; Dan Auld; Iana Astafeva; Raquel Puerta; Jerome Rotter; Bruce Psaty; Joshua Bis; Will Longstreth; Thierry Couffinhal; Pablo Garcia-Gonzalez; Vanesa Pytel; Marta Marquié; Amanda Cano; Mercè Boada; Marc Joliot; Mark Lathrop; Quentin Le Grand; Lenore Launer; Joanna Wardlaw; Myriam Heiman; Agustin Ruiz; Paul Matthews; Sudha Seshadri; Myriam Fornage; Hieab Adams; Aniket Mishra; David-Alexandre Trégouët; Yukinori Okada; Manolis Kellis; Philip De Jager; Christophe Tzourio; Yoichiro Kamatani; Fumihiko Matsuda; Carlos Cruchaga

  Research square, 02 Jul. 2024

  
• Comprehensive HLA Typing from a Current Allele Database Using Next-Generation Sequencing Data.

  Shuji Kawaguchi; Koichiro Higasa; Ryo Yamada; Fumihiko Matsuda

  Methods in molecular biology (Clifton, N.J.), 2024, Lead author

  
• Protocol for genome-wide association study of human blood metabolites

  Takeshi Iwasaki; Yoichiro Kamatani; Kazuhiro Sonomura; Shuji Kawaguchi; Fumihiko Matsuda

  STAR Protocols, Jun. 2024, Peer-reviewed

  
• A phenome-wide association study (PheWAS) to identify the health impacts of 4-cresol sulfate in the Nagahama Study.

  Huiting Ou; Shuji Kawaguchi; Kazuhiro Sonomura; Takahisa Kawaguchi; Seri Kitada; Satoshi Yoshiji; François Brial; Dominique Gauguier; Jianguo Xia; Fumihiko Matsuda

  Scientific reports, 25 Aug. 2023, Peer-reviewed

  
• Improved genetic prediction of the risk of knee osteoarthritis using the risk factor-based polygenic score.

  Yugo Morita; Yoichiro Kamatani; Hiromu Ito; Shiro Ikegawa; Takahisa Kawaguchi; Shuji Kawaguchi; Meiko Takahashi; Chikashi Terao; Shuji Ito; Kohei Nishitani; Shinichiro Nakamura; Shinichi Kuriyama; Yasuharu Tabara; Fumihiko Matsuda; Shuichi Matsuda

  Arthritis research & therapy, 12 Jun. 2023, Peer-reviewed

  
• Identification of risk factors for elevated serum IgG4 levels in subjects in a large-scale health checkup cohort study.

  Yoshika Tsuji; Tomohiro Koga; Fumiaki Nonaka; Kenichi Nobusue; Shin-Ya Kawashiri; Hirotomo Yamanashi; Takahiro Maeda; Kazuhiko Arima; Kiyoshi Aoyagi; Meiko Takahashi; Shuji Kawaguchi; Fumihiko Matsuda; Hiroshi Fujii; Mitsuhiro Kawano; Hiroyuki Nakamura; Atsushi Kawakami; Mami Tamai

  Frontiers in immunology, 2023, Peer-reviewed

  
• Genetic influences on human blood metabolites in the Japanese population

  Takeshi Iwasaki; Yoichiro Kamatani; Kazuhiro Sonomura; Shuji Kawaguchi; Takahisa Kawaguchi; Meiko Takahashi; Koichiro Ohmura; Taka-Aki Sato; Fumihiko Matsuda

  iScience, Jan. 2023, Peer-reviewed

  Access this paper :

  
• Systemic Chronic Diseases Coexist with and Affect Locomotive Syndrome: The Nagahama Study.

  Yugo Morita; Hiromu Ito; Shuji Kawaguchi; Kohei Nishitani; Shinichiro Nakamura; Shinichi Kuriyama; Tome Ikezoe; Tadao Tsuboyama; Noriaki Ichihashi; Yasuharu Tabara; Fumihiko Matsuda; Shuichi Matsuda

  Modern rheumatology, 12 May 2022, Peer-reviewed

  
• Physical and Financial Impacts Caused by the COVID-19 Pandemic Exacerbate Knee Pain: A Longitudinal Study of a Large-Scale General Population.

  Yugo Morita; Hiromu Ito; Shuji Kawaguchi; Kohei Nishitani; Shinichiro Nakamura; Shinichi Kuriyama; Yoshihiro Sekine; Yasuharu Tabara; Fumihiko Matsuda; Shuichi Matsuda

  Modern rheumatology, 30 Mar. 2022, Peer-reviewed

  
• Genome wide association study of HTLV-1-associated myelopathy/tropical spastic paraparesis in the Japanese population.

  Marina Penova; Shuji Kawaguchi; Jun-Ichirou Yasunaga; Takahisa Kawaguchi; Tomoo Sato; Meiko Takahashi; Masakazu Shimizu; Mineki Saito; Kunihiro Tsukasaki; Masanori Nakagawa; Norihiro Takenouchi; Hideo Hara; Eiji Matsuura; Satoshi Nozuma; Hiroshi Takashima; Shuji Izumo; Toshiki Watanabe; Kaoru Uchimaru; Masako Iwanaga; Atae Utsunomiya; Yasuharu Tabara; Richard Paul; Yoshihisa Yamano; Masao Matsuoka; Fumihiko Matsuda

  Proceedings of the National Academy of Sciences of the United States of America, 16 Mar. 2021, Peer-reviewed, Lead author

  
• Combination of host immune metabolic biomarkers for the PD-1 blockade cancer immunotherapy.

  Ryusuke Hatae; Kenji Chamoto; Young Hak Kim; Kazuhiro Sonomura; Kei Taneishi; Shuji Kawaguchi; Hironori Yoshida; Hiroaki Ozasa; Yuichi Sakamori; Maryam Akrami; Sidonia Fagarasan; Izuru Masuda; Yasushi Okuno; Fumihiko Matsuda; Toyohiro Hirai; Tasuku Honjo

  JCI insight, 30 Jan. 2020, Peer-reviewed

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• High-Definition Genomic Analysis of HLA Genes Via Comprehensive HLA Allele Genotyping.

  Shuji Kawaguchi; Fumihiko Matsuda

  Methods in molecular biology (Clifton, N.J.), 2020, Lead author

  
• IgG4-related disease in the Japanese population: a genome-wide association study

  Chikashi Terao; Masao Ota; Takeshi Iwasaki; Masahiro Shiokawa; Shuji Kawaguchi; Katsutoshi Kuriyama; Takahisa Kawaguchi; Yuzo Kodama; Izumi Yamaguchi; Kazushige Uchida; Koichiro Higasa; Motohisa Yamamoto; Kensuke Kubota; Shujiro Yazumi; Kenji Hirano; Yasufumi Masaki; Hiroyuki Maguchi; Tomoki Origuchi; Shoko Matsui; Takahiro Nakazawa; Hideyuki Shiomi; Terumi Kamisawa; Osamu Hasebe; Eisuke Iwasaki; Kazuo Inui; Yoshiya Tanaka; Koh ichi Ohshima; Takashi Akamizu; Shigeo Nakamura; Seiji Nakamura; Takako Saeki; Hisanori Umehara; Tooru Shimosegawa; Nobumasa Mizuno; Mitsuhiro Kawano; Atsushi Azumi; Hiroki Takahashi; Tsuneyo Mimori; Yoichiro Kamatani; Kazuichi Okazaki; Tsutomu Chiba; Shigeyuki Kawa; Fumihiko Matsuda; Atsushi Kanno; Yoshihiro Okabe; Shinji Katsushima; Tetsuro Inokuma; Yukitaka Yamashita; Yoshitaka Nakai; Takayoshi Nishino; Kozo Kajimura; Mitsushige Shibatoge; Naoki Kanda; Akio Ido; Masaya Ohana; Ichiro Moriyama; Hiroshi Tatsuta; Kazuyoshi Matsumura; Keita Fujikawa; Norimoto Gotoh; Takanobu Tsutsumi; Masakazu Shimizu; Kazuya Setoh; Meiko Takahashi; Yasuharu Tabara; Jun Mimura; Takefumi Nakamura; Toshiyuki Kimura; Chiharu Kawanami

  The Lancet Rheumatology, Sep. 2019, Peer-reviewed

  
• Comprehensive HLA Typing from a Current Allele Database Using Next-Generation Sequencing Data.

  Shuji Kawaguchi; Koichiro Higasa; Ryo Yamada; Fumihiko Matsuda

  Methods in molecular biology (Clifton, N.J.), 2018, Lead author

  
• HLA-HD: An accurate HLA typing algorithm for next-generation sequencing data

  Shuji Kawaguchi; Koichiro Higasa; Masakazu Shimizu; Ryo Yamada; Fumihiko Matsuda

  HUMAN MUTATION, Jul. 2017, Peer-reviewed, Lead author

  
• KS-3 IgG4関連疾患はHLA領域とFCGR2B領域に関連する

  寺尾 知可史; 日笠 幸一郎; 三森 経世; 岡崎 和一; 千葉 勉; 川 茂幸; 松田 文彦; 太田 正穂; 塩川 雅広; 栗山 勝利; 児玉 裕三; 内田 一茂; 山口 泉; 川口 喬久; 川口 修治

  日本臨床免疫学会会誌, 2017, Peer-reviewed

  
• A promoter-level mammalian expression atlas.

  Alistair R R Forrest; Hideya Kawaji; Michael Rehli; J Kenneth Baillie; Michiel J L de Hoon; Vanja Haberle; Timo Lassmann; Ivan V Kulakovskiy; Marina Lizio; Masayoshi Itoh; Robin Andersson; Christopher J Mungall; Terrence F Meehan; Sebastian Schmeier; Nicolas Bertin; Mette Jørgensen; Emmanuel Dimont; Erik Arner; Christian Schmidl; Ulf Schaefer; Yulia A Medvedeva; Charles Plessy; Morana Vitezic; Jessica Severin; Colin A Semple; Yuri Ishizu; Robert S Young; Margherita Francescatto; Intikhab Alam; Davide Albanese; Gabriel M Altschuler; Takahiro Arakawa; John A C Archer; Peter Arner; Magda Babina; Sarah Rennie; Piotr J Balwierz; Anthony G Beckhouse; Swati Pradhan-Bhatt; Judith A Blake; Antje Blumenthal; Beatrice Bodega; Alessandro Bonetti; James Briggs; Frank Brombacher; A Maxwell Burroughs; Andrea Califano; Carlo V Cannistraci; Daniel Carbajo; Yun Chen; Marco Chierici; Yari Ciani; Hans C Clevers; Emiliano Dalla; Carrie A Davis; Michael Detmar; Alexander D Diehl; Taeko Dohi; Finn Drabløs; Albert S B Edge; Matthias Edinger; Karl Ekwall; Mitsuhiro Endoh; Hideki Enomoto; Michela Fagiolini; Lynsey Fairbairn; Hai Fang; Mary C Farach-Carson; Geoffrey J Faulkner; Alexander V Favorov; Malcolm E Fisher; Martin C Frith; Rie Fujita; Shiro Fukuda; Cesare Furlanello; Masaaki Furino; Jun-ichi Furusawa; Teunis B Geijtenbeek; Andrew P Gibson; Thomas Gingeras; Daniel Goldowitz; Julian Gough; Sven Guhl; Reto Guler; Stefano Gustincich; Thomas J Ha; Masahide Hamaguchi; Mitsuko Hara; Matthias Harbers; Jayson Harshbarger; Akira Hasegawa; Yuki Hasegawa; Takehiro Hashimoto; Meenhard Herlyn; Kelly J Hitchens; Shannan J Ho Sui; Oliver M Hofmann; Ilka Hoof; Furni Hori; Lukasz Huminiecki; Kei Iida; Tomokatsu Ikawa; Boris R Jankovic; Hui Jia; Anagha Joshi; Giuseppe Jurman; Bogumil Kaczkowski; Chieko Kai; Kaoru Kaida; Ai Kaiho; Kazuhiro Kajiyama; Mutsumi Kanamori-Katayama; Artem S Kasianov; Takeya Kasukawa; Shintaro Katayama; Sachi Kato; Shuji Kawaguchi; Hiroshi Kawamoto; Yuki I Kawamura; Tsugumi Kawashima; Judith S Kempfle; Tony J Kenna; Juha Kere; Levon M Khachigian; Toshio Kitamura; S Peter Klinken; Alan J Knox; Miki Kojima; Soichi Kojima; Naoto Kondo; Haruhiko Koseki; Shigeo Koyasu; Sarah Krampitz; Atsutaka Kubosaki; Andrew T Kwon; Jeroen F J Laros; Weonju Lee; Andreas Lennartsson; Kang Li; Berit Lilje; Leonard Lipovich; Alan Mackay-Sim; Ri-ichiroh Manabe; Jessica C Mar; Benoit Marchand; Anthony Mathelier; Niklas Mejhert; Alison Meynert; Yosuke Mizuno; David A de Lima Morais; Hiromasa Morikawa; Mitsuru Morimoto; Kazuyo Moro; Efthymios Motakis; Hozumi Motohashi; Christine L Mummery; Mitsuyoshi Murata; Sayaka Nagao-Sato; Yutaka Nakachi; Fumio Nakahara; Toshiyuki Nakamura; Yukio Nakamura; Kenichi Nakazato; Erik van Nimwegen; Noriko Ninomiya; Hiromi Nishiyori; Shohei Noma; Shohei Noma; Tadasuke Noazaki; Soichi Ogishima; Naganari Ohkura; Hiroko Ohimiya; Hiroshi Ohno; Mitsuhiro Ohshima; Mariko Okada-Hatakeyama; Yasushi Okazaki; Valerio Orlando; Dmitry A Ovchinnikov; Arnab Pain; Robert Passier; Margaret Patrikakis; Helena Persson; Silvano Piazza; James G D Prendergast; Owen J L Rackham; Jordan A Ramilowski; Mamoon Rashid; Timothy Ravasi; Patrizia Rizzu; Marco Roncador; Sugata Roy; Morten B Rye; Eri Saijyo; Antti Sajantila; Akiko Saka; Shimon Sakaguchi; Mizuho Sakai; Hiroki Sato; Suzana Savvi; Alka Saxena; Claudio Schneider; Erik A Schultes; Gundula G Schulze-Tanzil; Anita Schwegmann; Thierry Sengstag; Guojun Sheng; Hisashi Shimoji; Yishai Shimoni; Jay W Shin; Christophe Simon; Daisuke Sugiyama; Takaai Sugiyama; Masanori Suzuki; Naoko Suzuki; Rolf K Swoboda; Peter A C 't Hoen; Michihira Tagami; Naoko Takahashi; Jun Takai; Hiroshi Tanaka; Hideki Tatsukawa; Zuotian Tatum; Mark Thompson; Hiroo Toyodo; Tetsuro Toyoda; Elvind Valen; Marc van de Wetering; Linda M van den Berg; Roberto Verado; Dipti Vijayan; Ilya E Vorontsov; Wyeth W Wasserman; Shoko Watanabe; Christine A Wells; Louise N Winteringham; Ernst Wolvetang; Emily J Wood; Yoko Yamaguchi; Masayuki Yamamoto; Misako Yoneda; Yohei Yonekura; Shigehiro Yoshida; Susan E Zabierowski; Peter G Zhang; Xiaobei Zhao; Silvia Zucchelli; Kim M Summers; Harukazu Suzuki; Carsten O Daub; Jun Kawai; Peter Heutink; Winston Hide; Tom C Freeman; Boris Lenhard; Vladimir B Bajic; Martin S Taylor; Vsevolod J Makeev; Albin Sandelin; David A Hume; Piero Carninci; Yoshihide Hayashizaki

  Nature, 27 Mar. 2014, Peer-reviewed

  
• Positional correlation analysis improves reconstruction of full-length transcripts and alternative isoforms from noisy array signals or short reads

  Shuji Kawaguchi; Kei Iida; Erimi Harada; Kousuke Hanada; Akihiro Matsui; Masanori Okamoto; Kazuo Shinozaki; Motoaki Seki; Tetsuro Toyoda

  BIOINFORMATICS, Apr. 2012, Peer-reviewed, Lead author

  
• ARTADE2DB: Improved Statistical Inferences for Arabidopsis Gene Functions and Structure Predictions by Dynamic Structure-Based Dynamic Expression (DSDE) Analyses

  Kei Iida; Shuji Kawaguchi; Norio Kobayashi; Yuko Yoshida; Manabu Ishii; Erimi Harada; Kousuke Hanada; Akihiro Matsui; Masanori Okamoto; Junko Ishida; Maho Tanaka; Taeko Morosawa; Motoaki Seki; Tetsuro Toyoda

  PLANT AND CELL PHYSIOLOGY, Feb. 2011, Peer-reviewed, Lead author

  
• Arabidopsis tiling array analysis to identify the stress-responsive genes.

  Akihiro Matsui; Junko Ishida; Taeko Morosawa; Masanori Okamoto; Jong-Myong Kim; Yukio Kurihara; Makiko Kawashima; Maho Tanaka; Taiko Kim To; Kentaro Nakaminami; Eli Kaminuma; Takaho A Endo; Yoshiki Mochizuki; Shuji Kawaguchi; Norio Kobayashi; Kazuo Shinozaki; Tetsuro Toyoda; Motoaki Seki

  Methods in molecular biology (Clifton, N.J.), 2010

  
• OmicBrowse: a Flash-based high-performance graphics interface for genomic resources

  Akihiro Matsushima; Norio Kobayashi; Yoshiki Mochizuki; Manabu Ishii; Shuji Kawaguchi; Takaho A. Endo; Ryo Umetsu; Yuko Makita; Tetsuro Toyoda

  NUCLEIC ACIDS RESEARCH, Jul. 2009, Peer-reviewed

  
• PosMed-plus: An Intelligent Search Engine that Inferentially Integrates Cross-Species Information Resources for Molecular Breeding of Plants

  Yuko Makita; Norio Kobayashi; Yoshiki Mochizuki; Yuko Yoshida; Satomi Asano; Naohiko Heida; Mrinalini Deshpande; Rinki Bhatia; Akihiro Matsushima; Manabu Ishii; Shuji Kawaguchi; Kei Iida; Kosuke Hanada; Takashi Kuromori; Motoaki Seki; Kazuo Shinozaki; Tetsuro Toyoda

  PLANT AND CELL PHYSIOLOGY, Jul. 2009, Peer-reviewed

  
• A Secure Data Repository Integrating Huge Volumes of Digital Contents as a Semantic Web.

  Norio Kobayashi; Yuko Makita; Eli Kaminuma; Shuji Kawaguchi; Yuko Yoshida; Yoshiki Mochizuki; Akihiro Matsushima; Manabu Ishii; Ryo Umetsu; Satomi Asano; Naohiko Heida; Tetsuya Sakurai; Takashi Kuromori; Kazuo Shinozaki; Tetsuro Toyoda

  Proceedings of the Workshop on Semantic Web Applications and Tools for Life Sciences ( SWAT4LS ) Edinburgh, United Kingdom, November 28, 2008., 2008, Peer-reviewed

  
• Contextual unmixing of geospatial data based on gaussian mixture models and markov random fields

  R. Nishii; Y. Sawamura; A. Nakamoto; S. Kawaguchi

  International Geoscience and Remote Sensing Symposium (IGARSS), 2008, Peer-reviewed

  
• mRNAの転写活性を示すncRNA遺伝子の網羅的な探索

  花田 耕介; 川口 修治; 豊田 哲郎; 篠崎 一雄

  日本化学会情報化学部会誌, 2008, Peer-reviewed

  
• Hyperspectral image classification by bootstrap AdaBoost with random decision stumps

  Shuji Kawaguchi; Ryuei Nishii

  IEEE TRANSACTIONS ON GEOSCIENCE AND REMOTE SENSING, Nov. 2007, Peer-reviewed, Lead author

  
• Hyperspectral image classification by recursive spatial boosting based on the bootstrap method

  Shuji Kawaguchi; Ryuei Nishii

  IGARSS: 2007 IEEE INTERNATIONAL GEOSCIENCE AND REMOTE SENSING SYMPOSIUM, VOLS 1-12, 2007, Peer-reviewed, Lead author

  
• Unsupervised Contextual Classification of Remotely Sensed Imagery by Taking Mixel Information into Account

  KAWAGUCHI Shuji; YAMAZAKI Kensuke; NISHII Ryuei

  Journal of the Remote Sensing Society of Japan, Apr. 2006, Peer-reviewed, Lead author

  
• Contextual unsupervised classification of remotely sensed imagery with mixels - art. no. 63650R

  Shuji Kawaguchi; Ryuei Nishii

  Image and Signal Processing for Remote Sensing XII, 2006, Peer-reviewed, Lead author

  
• AdaBoost with different costs for misclassification and its applications to contextual image classification - art. no. 63650S

  Ryuei Nishii; Shuji Kawaguchi

  Image and Signal Processing for Remote Sensing XII, 2006, Peer-reviewed

  
• Hyperspectral Image Classification by AdaBoost with Decision Stumps Based on Composed Feature Variables

  Shuji Kawaguchi; Ryuei Nishii

  2006 IEEE INTERNATIONAL GEOSCIENCE AND REMOTE SENSING SYMPOSIUM, VOLS 1-8, 2006, Peer-reviewed, Lead author

  

Misc.

• HTLV-1高浸淫地域における大規模HLA解析による感染およびHAM/TSP発症リスクの関連解析

  川口修治; ペノヴァ マリナ; 川口喬久; 清水正和; 高橋めい子; 日笠幸一郎; 日笠幸一郎; 松田文彦

  日本HTLV-1学会学術集会, 2018

  
• 科学教育と情報教育の融合的教材―WebGISに基づく空間情報eラーニングシステム―

  山崎謙介; 蓮沼賢; 川口修治; 栗田勝実; 尾田博仁

  情報教育シンポジウム2003論文集, 22 Aug. 2003

  
• 人工知能を用いたデータマイニングと全ゲノムデータ解析技術の融合によるメンデル遺伝性疾患の新規疾患遺伝子同定への試み

  川口修治; 徳増玲太郎; 日笠幸一郎; 日笠幸一郎; 高野敦司; 松田文彦

  日本人類遺伝学会大会プログラム・抄録集, 2018

  
• 次世代シークエンサーと国際データベースを用いた高効率・高精度なHLA遺伝子群の包括的タイピング技術の確立

  川口修治; 日笠幸一郎; 日笠幸一郎; 清水正和; 山田亮; 松田文彦

  日本人類遺伝学会大会プログラム・抄録集, 2018

  
• I-071 Category classification for remotely sensed satellite image using the Markov Random Field model

  Kawaguchi Shuuji; Yamazaki Kensuke

  情報科学技術フォーラム一般講演論文集, 20 Aug. 2004

  
• HLA Allele Typing Using Next-generation Sequencing Data and International Database

  川口 修治; 日笠 幸一郎; 山田 亮; 松田 文彦

  最新醫學 = The medical frontline, Feb. 2019

  
• CONTEXTUAL CLUSTERING AND UNMIXING OF GEOSPATIAL DATA BASED ON GAUSSIAN MIXTURE MODELS AND MARKOV RANDOM FIELDS

  Sawamura Yoko; Kawaguchi Shuji; Ozaki Tomohiko

  Bulletin of informatics and cybernetics, Dec. 2009

  

Industrial Property Rights

• 特開2021-076561, 特願2019-205747, ＨＡＭ／ＴＳＰ発症リスク判定方法

  松田 文彦; 川口 修治

  
• 特許6798697, 特開2018-130036, 特願2017-024397, HLA遺伝子のPCRプライマーセット及びそれを用いたシークエンス法

  松田 文彦; 川口 修治; 清水 正和; 日笠 幸一郎

  
• 特開2018-108042, 特願2016-257041, 被験者のHLA遺伝子のアレルペアを判定する方法

  松田 文彦; 川口 修治; 日笠 幸一郎; 山田 亮

  

Awards

• 06 Dec. 2007

  日本リモートセンシング学会, 平成１９年度　日本リモートセンシング学会誌 論文奨励賞
• 08 Sep. 2006

  統計関連学会連合, 2006年度統計関連学会連合大会 最優秀報告賞

External funds: Kakenhi

• Elucidation of novel causative genes for rare diseases via high quality genomic information

  Grant-in-Aid for Scientific Research (C)

  Basic Section 48040:Medical biochemistry-related

  Kyoto University

  Shuji Kawaguchi

  From 01 Apr. 2019, To 31 Mar. 2022, Project Closed

  HLA;人工知能;機械学習;希少難治性疾患;バイオインフォマティクス;次世代シークエンサー;HTLV-1 関連脊髄症;網膜色素変性;KIR;宿主・ウイルスゲノム統合解析;深層学習;遺伝統計学;NGS;難病解明;統計遺伝学;データベース

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-19K07349/
• Development of association analysis method for rare diseases based on comprehensive HLA typing with multiple risk factors

  Grant-in-Aid for Young Scientists (B)

  Kyoto University

  Shuji Kawaguchi

  From 01 Apr. 2016, To 31 Mar. 2019, Project Closed

  HLA;次世代シークエンサー;タイピング;アルゴリズム;遺伝統計学;マルチプレックスPCR;ジェノタイピング;ソフトウェア;関連解析;HTLV-1;ゲノム;免疫学;バイオインフォマティクス

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-16K18474/

Education

Teaching subject(s)

• From 01 Apr. 2024, To 31 Mar. 2025

  Genome Analysis Using NGS and Its Applications

  S001, Spring, Graduate School of Medicine, 2
• From 01 Apr. 2024, To 31 Mar. 2025

  Genome Science and Medicine

  M022, Fall, Graduate School of Medicine, 2
• From 01 Apr. 2024, To 31 Mar. 2025

  Genomic Medicine II

  S003, Fall, Graduate School of Medicine, 4
• From 01 Apr. 2023, To 31 Mar. 2024

  Genome Science and Medicine

  M022, Fall, Graduate School of Medicine, 2
• From 01 Apr. 2023, To 31 Mar. 2024

  Genome Analysis Using NGS and Its Applications

  S001, Fall, Graduate School of Medicine, 2
• From 01 Apr. 2023, To 31 Mar. 2024

  Genomic Medicine II

  S003, Fall, Graduate School of Medicine, 4
• From 01 Apr. 2022, To 31 Mar. 2023

  Genome Analysis Using NGS and Its Applications

  S001, Fall, Graduate School of Medicine, 2
• From 01 Apr. 2022, To 31 Mar. 2023

  Genome Science and Medicine

  M022, Fall, Graduate School of Medicine, 2
• From 01 Apr. 2022, To 31 Mar. 2023

  Genomic Medicine II

  S003, Fall, Graduate School of Medicine, 4
• From Apr. 2021, To Mar. 2022

  Genomic Medicine II

  Fall, 医学研究科
• From Apr. 2021, To Mar. 2022

  Genome Analysis Using NGS and Its Applications

  Fall, 医学研究科
• From Apr. 2021, To Mar. 2022

  Genome Science and Medicine

  Fall, 医学研究科