基本情報

学部兼担

• 国際高等教育院

学位

• Ｐｈ．Ｄ．(Lund University)
• Ｍ．Ｓｃ．(Lund University)

ID,URL

• J-Global ID

  201401012105964630

研究

研究分野

• 情報通信, 数理情報学

論文

• Polynomial-time equivalences and refined algorithms for longest common subsequence variants

  Yuichi Asahiro; Jesper Jansson; Guohui Lin; Eiji Miyano; Hirotaka Ono; Tadatoshi Utashima

  Discrete Applied Mathematics, 2024年08月15日

  
• A Faster Algorithm for Constructing the Frequency Difference Consensus Tree

  Jesper Jansson; Wing Kin Sung; Seyed Ali Tabatabaee; Yutong Yang

  Leibniz International Proceedings in Informatics, LIPIcs, 2024年03月

  
• Shortest Longest-Path Graph Orientations

  Yuichi Asahiro; Jesper Jansson; Avraham A. Melkman; Eiji Miyano; Hirotaka Ono; Quan Xue; Shay Zakov

  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2024年

  
• Normalized L3-based link prediction in protein–protein interaction networks

  Ho Yin Yuen; Jesper Jansson

  BMC Bioinformatics, 2023年12月

  
• Building a small and informative phylogenetic supertree

  Jesper Jansson; Konstantinos Mampentzidis; T. P. Sandhya

  Information and Computation, 2023年10月

  
• Online and Approximate Network Construction from Bounded Connectivity Constraints

  Jesper Jansson; Christos Levcopoulos; Andrzej Lingas

  International Journal of Foundations of Computer Science, 2023年08月01日

  
• MUL-Tree Pruning for Consistency and Compatibility

  Christopher Hampson; Daniel J. Harvey; Costas S. Iliopoulos; Jesper Jansson; Zara Lim; Wing Kin Sung

  Leibniz International Proceedings in Informatics, LIPIcs, 2023年06月

  
• Approximation Algorithms for the Longest Run Subsequence Problem

  Yuichi Asahiro; Mingyang Gong; Guohui Lin; Hirotaka Ono; Hiroshi Eto; Jesper Jansson; Eiji Miyano; Shunichi Tanaka

  Leibniz International Proceedings in Informatics, LIPIcs, 2023年06月

  
• Editorial: Surveys in Algorithm Analysis and Complexity Theory (Special Issue)

  Jesper Jansson

  Algorithms, 2023年04月

  
• Finding the Cyclic Covers of a String

  Roberto Grossi; Costas S. Iliopoulos; Jesper Jansson; Zara Lim; Wing Kin Sung; Wiktor Zuba

  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2023年

  
• Polynomial-Time Equivalences and Refined Algorithms for Longest Common Subsequence Variants

  Yuichi Asahiro; Jesper Jansson; Guohui Lin; Eiji Miyano; Hirotaka Ono; Tadatoshi Utashima

  Leibniz International Proceedings in Informatics, LIPIcs, 2022年06月01日

  
• Efficient Assignment of Identities in Anonymous Populations

  Leszek Gąsieniec; Jesper Jansson; Christos Levcopoulos; Andrzej Lingas

  Leibniz International Proceedings in Informatics, LIPIcs, 2022年02月01日

  
• Upper and lower degree-constrained graph orientation with minimum penalty

  Yuichi Asahiro; Jesper Jansson; Eiji Miyano; Hirotaka Ono

  Theoretical Computer Science, 2022年01月08日

  
• New and improved algorithms for unordered tree inclusion

  Tatsuya Akutsu; Jesper Jansson; Ruiming Li; Atsuhiro Takasu; Takeyuki Tamura

  Theoretical Computer Science, 2021年09月03日

  
• Foreword: Selected papers from the 22nd International Symposium on Fundamentals of Computation Theory (FCT 2019)

  Leszek Gąsieniec; Jesper Jansson; Christos Levcopoulos

  Journal of Computer and System Sciences, 2021年09月

  
• Pushing the Online Boolean Matrix-vector Multiplication conjecture off-line and identifying its easy cases

  Leszek Gąsieniec; Jesper Jansson; Christos Levcopoulos; Andrzej Lingas; Mia Persson

  Journal of Computer and System Sciences, 2021年06月

  
• Computing the Rooted Triplet Distance Between Phylogenetic Networks

  Jesper Jansson; Konstantinos Mampentzidis; Ramesh Rajaby; Wing Kin Sung

  Algorithmica, 2021年06月

  
• Graph Orientation with Edge Modifications

  Yuichi Asahiro; Jesper Jansson; Eiji Miyano; Hirotaka Ono; T. P. Sandhya

  International Journal of Foundations of Computer Science, 2021年02月

  
• Online and Approximate Network Construction from Bounded Connectivity Constraints

  Jesper Jansson; Christos Levcopoulos; Andrzej Lingas

  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2021年

  
• Fast Algorithms for the Rooted Triplet Distance Between Caterpillars

  Jesper Jansson; Wing Lik Lee

  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2021年

  
• Graph orientation with splits

  Yuichi Asahiro; Jesper Jansson; Eiji Miyano; Hesam Nikpey; Hirotaka Ono

  Theoretical Computer Science, 2020年12月06日

  
• Exact algorithms for the repetition-bounded longest common subsequence problem

  Yuichi Asahiro; Jesper Jansson; Guohui Lin; Eiji Miyano; Hirotaka Ono; Tadatoshi Utashima

  Theoretical Computer Science, 2020年10月24日

  
• Better Link Prediction for Protein-Protein Interaction Networks

  Ho Yin Yuen; Jesper Jansson

  Proceedings - IEEE 20th International Conference on Bioinformatics and Bioengineering, BIBE 2020, 2020年10月

  
• An efficient algorithm for the rooted triplet distance between galled trees

  Jesper Jansson; Ramesh Rajaby; Wing Kin Sung

  Journal of Computational Biology, 2019年09月

  
• Building a small and informative phylogenetic supertree

  Jesper Jansson; Konstantinos Mampentzidis; T. P. Sandhya

  Leibniz International Proceedings in Informatics, LIPIcs, 2019年09月

  
• Editorial: Special issue on efficient data structures

  Jesper Jansson

  Algorithms, 2019年07月

  
• The approximability of maximum rooted triplets consistency with fan triplets and forbidden triplets

  Katharina Dannenberg; Jesper Jansson; Andrzej Lingas; Eva Marta Lundell

  Discrete Applied Mathematics, 2019年03月31日

  
• Graph orientation with edge modifications

  Yuichi Asahiro; Jesper Jansson; Eiji Miyano; Hirotaka Ono; Sandhya T. P

  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2019年

  
• Computing the rooted triplet distance between phylogenetic networks

  Jesper Jansson; Konstantinos Mampentzidis; Ramesh Rajaby; Wing Kin Sung

  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2019年

  
• Pushing the online matrix-vector conjecture off-line and identifying its easy cases

  Leszek Gąsieniec; Jesper Jansson; Christos Levcopoulos; Andrzej Lingas; Mia Persson

  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2019年

  
• Preface

  Leszek Antoni Gąsieniec; Jesper Jansson; Christos Levcopoulos

  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2019年

  
• Exact Algorithms for the Bounded Repetition Longest Common Subsequence Problem

  Yuichi Asahiro; Jesper Jansson; Guohui Lin; Eiji Miyano; Hirotaka Ono; Tadatoshi Utashima

  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2019年

  
• New and improved algorithms for unordered tree inclusion

  Tatsuya Akutsu; Jesper Jansson; Ruiming Li; Atsuhiro Takasu; Takeyuki Tamura

  Leibniz International Proceedings in Informatics, LIPIcs, 2018年12月01日

  
• Determining the consistency of resolved triplets and fan triplets

  Jesper Jansson; Andrzej Lingas; Ramesh Rajaby; Wing Kin Sung

  Journal of Computational Biology, 2018年07月

  
• Determining the minimum number of protein-protein interactions required to support known protein complexes

  Natsu Nakajima; Morihiro Hayashida; Jesper Jansson; Osamu Maruyama; Tatsuya Akutsu

  PLoS ONE, 2018年04月

  
• Preface

  Jesper Jansson; Carlos Martín-Vide; Miguel A. Vega-Rodríguez

  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2018年

  
• Graph Orientation with Splits

  Yuichi Asahiro; Jesper Jansson; Eiji Miyano; Hesam Nikpey; Hirotaka Ono

  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2018年

  
• 3D Rectangulations and Geometric Matrix Multiplication

  Peter Floderus; Jesper Jansson; Christos Levcopoulos; Andrzej Lingas; Dzmitry Sledneu

  Algorithmica, 2018年01月01日

  
• Algorithms for the Majority Rule (+) Consensus Tree and the Frequency Difference Consensus Tree

  Jesper Jansson; Ramesh Rajaby; Chuanqi Shen; Wing Kin Sung

  IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2018年

  
• On finding the Adams consensus tree

  Jesper Jansson; Zhaoxian Li; Wing Kin Sung

  Information and Computation, 2017年10月

  
• A More Practical Algorithm for the Rooted Triplet Distance

  Jesper Jansson; Ramesh Rajaby

  Journal of Computational Biology, 2017年02月

  
• On the parameterized complexity of associative and commutative unification

  Tatsuya Akutsu; Jesper Jansson; Atsuhiro Takasu; Takeyuki Tamura

  Theoretical Computer Science, 2017年01月17日

  この論文にアクセスする：

  
• Determining the consistency of resolved triplets and fan triplets

  Jesper Jansson; Andrzej Lingas; Ramesh Rajaby; Wing Kin Sung

  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2017年

  
• An efficient algorithm for the rooted triplet distance between galled trees

  Jesper Jansson; Ramesh Rajaby; Wing Kin Sung

  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2017年

  
• Faster Algorithms for Computing the R* Consensus Tree

  Jesper Jansson; Wing Kin Sung; Hoa Vu; Siu Ming Yiu

  Algorithmica, 2016年12月01日

  
• Minimal phylogenetic supertrees and local consensus trees

  Jesper Jansson; Wing Kin Sung

  Leibniz International Proceedings in Informatics, LIPIcs, 2016年08月01日

  
• Similar subtree search using extended tree inclusion

  Tomoya Mori; Atsuhiro Takasu; Jesper Jansson; Jaewook Hwang; Takeyuki Tamura; Tatsuya Akutsu

  2016 IEEE 32nd International Conference on Data Engineering, ICDE 2016, 2016年06月22日

  
• Improved algorithms for constructing consensus trees

  Jesper Jansson; Chuanqi Shen; Wing Kin Sung

  Journal of the ACM, 2016年06月

  
• Degree-Constrained Graph Orientation: Maximum Satisfaction and Minimum Violation

  Yuichi Asahiro; Jesper Jansson; Eiji Miyano; Hirotaka Ono

  Theory of Computing Systems, 2016年01月01日

  
• Similar Subtree Search Using Extended Tree Inclusion

  Tomoya Mori; Atsuhiro Takasu; Jesper Jansson; Jaewook Hwang; Takeyuki Tamura; Tatsuya Akutsu

  IEEE Transactions on Knowledge and Data Engineering, 2015年12月01日

  
• Graph orientations optimizing the number of light or heavy vertices

  Yuichi Asahiro; Jesper Jansson; Eiji Miyano; Hirotaka Ono

  Journal of Graph Algorithms and Applications, 2015年08月01日

  
• Linked Dynamic Tries with Applications to LZ-Compression in Sublinear Time and Space

  Jesper Jansson; Kunihiko Sadakane; Wing Kin Sung

  Algorithmica, 2015年04月

  
• On finding the Adams consensus tree

  Jesper Jansson; Zhaoxian Li; Wing Kin Sung

  Leibniz International Proceedings in Informatics, LIPIcs, 2015年02月01日

  
• The approximability of maximum rooted triplets consistency with fan triplets and forbidden triplets

  Jesper Jansson; Andrzej Lingas; Eva Marta Lundell

  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2015年

  
• A more practical algorithm for the rooted triplet distance

  Jesper Jansson; Ramesh Rajaby

  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2015年

  
• Computing the rooted triplet distance between galled trees by counting triangles

  Jesper Jansson; Andrzej Lingas

  Journal of Discrete Algorithms, 2014年03月

  
• Degree-constrained graph orientation: Maximum satisfaction and minimum violation

  Yuichi Asahiro; Jesper Jansson; Eiji Miyano; Hirotaka Ono

  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2014年

  
• On the parameterized complexity of associative and commutative unification

  Tatsuya Akutsu; Jesper Jansson; Atsuhiro Takasu; Takeyuki Tamura

  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2014年

  
• 3D rectangulations and geometric matrix multiplication

  Peter Floderus; Jesper Jansson; Christos Levcopoulos; Andrzej Lingas; Dzmitry Sledneu

  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2014年

  
• Faster algorithms for computing the R* Consensus tree

  Jesper Jansson; Wing Kin Sung; Hoa Vu; Siu Ming Yiu

  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2014年

  
• Fast relative Lempel-Ziv self-index for similar sequences

  Huy Hoang Do; Jesper Jansson; Kunihiko Sadakane; Wing Kin Sung

  Theoretical Computer Science, 2014年

  
• 次数制約のあるグラフ有向化問題の近似について (Theoretical Foundations of Computing)

  朝廣 雄一; ジャンソン ジェスパー; 宮野 英次; 小野 廣隆

  電子情報通信学会技術研究報告 = IEICE technical report : 信学技報, 2013年12月20日

  
• Constructing the R*consensus tree of two trees in subcubic time

  Jesper Jansson; Wing Kin Sung

  Algorithmica, 2013年06月

  
• Improved algorithms for constructing consensus trees

  Jesper Jansson; Chuanqi Shen; Wing Kin Sung

  Proceedings of the Annual ACM-SIAM Symposium on Discrete Algorithms, 2013年

  
• An optimal algorithm for building the majority rule consensus tree

  Jesper Jansson; Chuanqi Shen; Wing Kin Sung

  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2013年

  
• Algorithms for the majority rule (+) consensus tree and the frequency difference consensus tree

  Jesper Jansson; Chuanqi Shen; Wing Kin Sung

  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2013年

  
• Editorial: Special issue on graph algorithms

  Jesper Jansson

  Algorithms, 2013年

  
• Improved algorithms for constructing consensus trees

  J. Jansson; C. Shen; W.-K. Sung

  Proceedings of the Annual ACM-SIAM Symposium on Discrete Algorithms, 2013年, 査読有り

  
• Polynomial-time algorithms for building a consensus MUL-tree

  Yun Cui; Jesper Jansson; Wing Kin Sung

  Journal of Computational Biology, 2012年09月01日

  
• Faster computation of the Robinson-Foulds distance between phylogenetic networks

  Tetsuo Asano; Jesper Jansson; Kunihiko Sadakane; Ryuhei Uehara; Gabriel Valiente

  Information Sciences, 2012年08月15日

  
• More efficient periodic traversal in anonymous undirected graphs

  Jurek Czyzowicz; Stefan Dobrev; Leszek Gasieniec; David Ilcinkas; Jesper Jansson; Ralf Klasing; Ioannis Lignos; Russell Martin; Kunihiko Sadakane; Wing Kin Sung

  Theoretical Computer Science, 2012年07月27日

  
• Inferring a graph from path frequency

  Tatsuya Akutsu; Daiji Fukagawa; Jesper Jansson; Kunihiko Sadakane

  Discrete Applied Mathematics, 2012年07月

  この論文にアクセスする：

  
• Ultra-succinct representation of ordered trees with applications

  Jesper Jansson; Kunihiko Sadakane; Wing Kin Sung

  Journal of Computer and System Sciences, 2012年03月

  
• Upper and lower degree bounded graph orientation with minimum penalty

  Yuichi Asahiro; Jesper Jansson; Eiji Miyano; Hirotaka Ono

  Conferences in Research and Practice in Information Technology Series, 2012年

  
• Asymptotic limits of a new type of maximization recurrence with an application to bioinformatics

  Kun Mao Chao; An Chiang Chu; Jesper Jansson; Richard S. Lemence; Alban Mancheron

  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2012年

  
• Fast relative Lempel-Ziv self-index for similar sequences

  Huy Hoang Do; Jesper Jansson; Kunihiko Sadakane; Wing Kin Sung

  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2012年

  
• The complexity of inferring a minimally resolved phylogenetic supertree

  Jesper Jansson; Richard S. Lemence; Andrzej Lingas

  SIAM Journal on Computing, 2012年

  
• Computing the rooted triplet distance between galled trees by counting triangles

  Jesper Jansson; Andrzej Lingas

  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2012年

  
• Graph orientations optimizing the number of light or heavy vertices

  Yuichi Asahiro; Jesper Jansson; Eiji Miyano; Hirotaka Ono

  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2012年

  
• CRAM: Compressed Random Access Memory

  Jesper Jansson; Kunihiko Sadakane; Wing Kin Sung

  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2012年

  
• Upper and lower degree bounded graph orientation with minimum penalty

  Y. Asahiro; J. Jansson; E. Miyano; H. Ono

  Conferences in Research and Practice in Information Technology Series, 2012年, 査読有り

  
• Minimizing Penalty on Upper and Lower Degree Constrained Graph Orientation (コンピュテーション)

  朝廣 雄一; JANSSON Jesper; 宮野 英次; 小野 廣隆

  電子情報通信学会技術研究報告 : 信学技報, 2011年12月16日

  
• Approximation algorithms for buy-at-bulk geometric network design

  Artur Czumaj; Jurek Czyzowicz; Leszek Ga̧sieniec; Jesper Jansson; Andrzej Lingas; Pawel Zylinski

  International Journal of Foundations of Computer Science, 2011年12月

  
• Approximation algorithms for the graph orientation minimizing the maximum weighted outdegree

  Yuichi Asahiro; Jesper Jansson; Eiji Miyano; Hirotaka Ono; Kouhei Zenmyo

  Journal of Combinatorial Optimization, 2011年07月

  
• Algorithms for Finding a Most Similar Subforest

  Jesper Jansson; Zeshan Peng

  Theory of Computing Systems, 2011年05月

  
• Graph orientation to maximize the minimum weighted outdegree

  Yuichi Asahiro; Jesper Jansson; Eiji Miyano; Hirotaka Ono

  International Journal of Foundations of Computer Science, 2011年04月

  
• Flexible taxonomic assignment of ambiguous sequencing reads

  José C. Clemente; Jesper Jansson; Gabriel Valiente

  BMC Bioinformatics, 2011年01月07日

  
• Computing a smallest multilabeled phylogenetic tree from rooted triplets

  Sylvain Guillemot; Jesper Jansson; Wing Kin Sung

  IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2011年

  
• Algorithms for building consensus MUL-trees

  Yun Cui; Jesper Jansson; Wing Kin Sung

  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2011年

  
• New results on optimizing rooted triplets consistency

  Jaroslaw Byrka; Sylvain Guillemot; Jesper Jansson

  Discrete Applied Mathematics, 2010年06月06日

  
• Linear-time protein 3-D structure searching with insertions and deletions

  Tetsuo Shibuya; Jesper Jansson; Kunihiko Sadakane

  Algorithms for Molecular Biology, 2010年01月04日

  
• Accurate taxonomic assignment of short pyrosequencing reads

  José C. Clemente; Jesper Jansson; Gabriel Valiente

  Pacific Symposium on Biocomputing 2010, PSB 2010, 2010年

  
• More efficient periodic traversal in anonymous undirected graphs

  Jurek Czyzowicz; Stefan Dobrev; Leszek Ga̧sieniec; David Ilcinkas; Jesper Jansson; Ralf Klasing; Ioannis Lignos; Russell Martin; Kunihiko Sadakane; Wing Kin Sung

  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2010年

  
• The complexity of inferring a minimally resolved phylogenetic supertree

  Jesper Jansson; Richard S. Lemence; Andrzej Lingas

  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2010年

  
• Constructing the R* consensus tree of two trees in subcubic time

  Jesper Jansson; Wing Kin Sung

  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2010年

  
• Faster computation of the Robinson-Foulds distance between phylogenetic networks

  Tetsuo Asano; Jesper Jansson; Kunihiko Sadakane; Ryuhei Uehara; Gabriel Valiente

  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2010年

  
• ACCURATE TAXONOMIC ASSIGNMENT OF SHORT PYROSEQUENCING READS

  Jose C. Clemente; Jesper Jansson; Gabriel Valiente

  PACIFIC SYMPOSIUM ON BIOCOMPUTING 2010, 2010年, 査読有り

  
• Graph Orientation to Maximize the Minimum Weighted Outdegree

  Yuichi Asahiro; Jesper Jansson; Eiji Miyano; Hirotaka Ono

  2009 IEEE INTERNATIONAL SYMPOSIUM ON PARALLEL & DISTRIBUTED PROCESSING, VOLS 1-5, 2009年, 査読有り

  
• Linear-time protein 3-D structure searching with insertions and deletions

  Tetsuo Shibuya; Jesper Jansson; Kunihiko Sadakane

  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2009年

  
• Approximation algorithms for buy-at-bulk geometric network design

  Artur Czumaj; Jurek Czyzowicz; Leszek Ga̧sieniec; Jesper Jansson; Andrzej Lingas; Pawel Zylinski

  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2009年

  
• Computing a smallest multi-labeled phylogenetic tree from rooted triplets

  Sylvain Guillemot; Jesper Jansson; Wing Kin Sung

  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2009年

  
• New results on optimizing rooted triplets consistency

  Jaroslaw Byrka; Sylvain Guillemot; Jesper Jansson

  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2008年

  
• Polynomial-time algorithms for the ordered maximum agreement subtree problem

  Anders Dessmark; Jesper Jansson; Andrzej Lingas; Eva Marta Lundell

  Algorithmica (New York), 2007年07月

  
• Online and dynamic recognition of squarefree strings

  Jesper Jansson; Zeshan Peng

  International Journal of Foundations of Computer Science, 2007年04月

  
• On the approximability of maximum and minimum edge clique partition problems

  Anders Dessmark; Andrzej Lingas; Eva Marta Lundell; Mia Persson; Jesper Jansson

  International Journal of Foundations of Computer Science, 2007年04月

  
• Approximation algorithms for the graph orientation minimizing the maximum weighted outdegree

  Yuichi Asahiro; Jesper Jansson; Eiji Miyano; Hirotaka Ono; Kouhei Zenmyo

  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2007年

  
• Compressed dynamic tries with applications to LZ-compression in sublinear time and space

  Jesper Jansson; Kunihiko Sadakane; Wing Kin Sung

  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2007年

  
• Ultra-succinct representation of ordered trees

  Jesper Jansson; Kunihiko Sadakane; Wing Kin Sung

  Proceedings of the Annual ACM-SIAM Symposium on Discrete Algorithms, 2007年

  
• Inferring a level-1 phylogenetic network from a dense set of rooted triplets

  Jesper Jansson; Wing Kin Sung

  Theoretical Computer Science, 2006年10月25日

  
• A faster and more space-efficient algorithm for inferring arc-annotations of RNA sequences through alignment

  Jesper Jansson; See Kiong Ng; Wing Kin Sung; Hugo Willy

  Algorithmica (New York), 2006年10月

  
• Reconstructing an ultrametric galled phylogenetic network from a distance matrix

  Ho Leung Chan; Jesper Jansson; Tak Wah Lam; Siu Ming Yiu

  Journal of Bioinformatics and Computational Biology, 2006年08月

  
• 最大重み付き出次数を最小化するグラフ有向化問題の近似（不）可能性

  朝廣雄一; Jesper Jansson; 宮野 英次; 小野 廣隆; 善明紘平

  情報処理学会研究報告アルゴリズム（AL）, 2006年07月03日

  
• Local gapped subforest alignment and its application in finding RNA structural motifs

  Jesper Jansson; Ngo Trung Hieu; Wing Kin Sung

  Journal of Computational Biology, 2006年04月

  
• Algorithms for finding a most similar subforest

  Jesper Jansson; Zeshan Peng

  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2006年

  
• Inferring phylogenetic relationships avoiding forbidding rooted triplets

  Ying Jun He; Trinh N.D. Huynh; Jesper Jansson; Wing Kin Sung

  Journal of Bioinformatics and Computational Biology, 2006年

  
• Algorithms for combining rooted triplets into a galled phylogenetic network

  Jesper Jansson; Nguyen Bao Nguyen; Wing Kin Sung

  SIAM Journal on Computing, 2006年

  
• On the approximability of maximum and minimum edge clique partition problems

  Anders Dessmark; Jesper Jansson; Andrzej Lingas; Eva Marta Lundell; Mia Persson

  Conferences in Research and Practice in Information Technology Series, 2006年

  
• Rooted maximum agreement supertrees

  Jesper Jansson; Joseph H.K. Ng; Kunihiko Sadakane; Wing Kin Sung

  Algorithmica (New York), 2005年12月

  
• Computing the maximum agreement of phylogenetic networks

  Charles Choy; Jesper Jansson; Kunihiko Sadakane; Wing Kin Sung

  Theoretical Computer Science, 2005年05月20日

  
• Algorithms for combining rooted triplets into a galled phylogenetic network

  Jesper Jansson; Nguyen Bao Nguyen; Wing Kin Sung

  Proceedings of the Annual ACM-SIAM Symposium on Discrete Algorithms, 2005年

  
• Finding short right-hand-on-the-wall walks in graphs

  Stefan Dobrev; Jesper Jansson; Kunihiko Sadakane; Wing Kin Sung

  Lecture Notes in Computer Science, 2005年

  
• Constructing a smallest refining galled phylogenetic network

  Trinh N.D. Huynh; Jesper Jansson; Nguyen Bao Nguyen; Wing Kin Sung

  Lecture Notes in Bioinformatics (Subseries of Lecture Notes in Computer Science), 2005年

  
• Reconstructing an ultrametric galled phylogenetic network from a distance matrix

  Ho Leung Chan; Jesper Jansson; Tak Wah Lam; Siu Ming Yiu

  Lecture Notes in Computer Science, 2005年

  
• Online and dynamic recognition of squarefree strings

  Jesper Jansson; Zeshan Peng

  Lecture Notes in Computer Science, 2005年

  
• Inferring phylogenetic relationships avoiding Forbidden rooted triplets

  Ying Jun He; Trinh N.D. Huynh; Jesper Jansson; Wing Kin Sung

  Series on Advances in Bioinformatics and Computational Biology, 2005年

  
• Approximation algorithms for Hamming clustering problems

  Leszek Ga̧sieniec; Jesper Jansson; Andrzej Lingas

  Journal of Discrete Algorithms, 2004年06月

  
• Computing the maximum agreement of phylogenetic networks

  Charles Choy; Jesper Jansson; Kunihiko Sadakane; Wing Kin Sung

  Electronic Notes in Theoretical Computer Science, 2004年02月16日

  
• Inferring a level-1 phylogenetic network from a dense set of rooted triplets

  Jesper Jansson; Wing Kin Sung

  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2004年

  
• Rooted maximum agreement supertrees

  Jesper Jansson; Joseph H.K. Ng; Kunihiko Sadakane; Wing Kin Sung

  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2004年

  
• Local gapped subforest alignment and its application in finding RNA structural motifs

  Jesper Jansson; Ngo Trung Hieu; Wing Kin Sung

  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2004年

  
• The maximum agreement of two nested phylogenetic networks

  Jesper Jansson; Wing Kin Sung

  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2004年

  
• A faster and more space-efficient algorithm for inferring Arc-annotations of RNA sequences through alignment

  Jesper Jansson; See Kiong Ng; Wing Kin Sung; Hugo Willy

  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2004年

  
• Polynomial-time algorithms for the ordered maximum agreement subtree problem

  Anders Dessmark; Jesper Jansson; Andrzej Lingas; Eva Marta Lundell

  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2004年

  
• Semi-balanced colorings of graphs: Generalized 2-colorings based on a relaxed discrepancy condition

  Jesper Jansson; Takeshi Tokuyama

  Graphs and Combinatorics, 2004年

  
• A Fast Algorithm for Optimal Alignment between Similar Ordered Trees

  Jesper Jansson; Andrzej Lingas

  Fundamenta Informaticae, 2003年07月

  
• グラフの準平衡彩色 ? ディスクレパンシー条件による2色彩色

  ジェスパージャンソン; 徳山 豪

  情報処理学会研究報告アルゴリズム（AL）, 2002年07月25日

  
• On the complexity of inferring rooted evolutionary trees

  Jesper Jansson

  Electronic Notes in Discrete Mathematics, 2001年04月

  
• A fast algorithm for optimal alignment between similar ordered trees

  Jesper Jansson; Andrzej Lingas

  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2001年

  
• Approximation algorithms for hamming clustering problems

  Leszek G Ą Sieniec; Jesper Jansson; Andrzej Lingas

  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2000年

  
• Efficient approximation algorithms for the Hamming center problem

  Leszek Gasieniec; Jesper Jansson; Andrzej Lingas

  Proceedings of the Annual ACM-SIAM Symposium on Discrete Algorithms, 1999年

  
• On the Complexity of Constructing Evolutionary Trees

  Leszek Ga̧sieniec; Jesper Jansson; Andrzej Lingas; Anna Östlin

  Journal of Combinatorial Optimization, 1999年

  
• Efficient approximation algorithms for the Hamming center problem

  Leszek Gasieniec; Jesper Jansson; Andrzej Lingas

  Proceedings of the Annual ACM-SIAM Symposium on Discrete Algorithms, 1999年, 査読有り

  
• On the complexity of computing evolutionary trees

  Leszek Gasieniec; Jesper Jansson; Andrzej Lingas; Anna Östlin

  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 1997年

  

受賞

• 2020年10月28日

  Institute of Electrical and Electronics Engineers (IEEE), Best Paper Award in Bioinformatics at The Twentieth IEEE International Conference on BioInformatics and BioEngineering (IEEE BIBE 2020)

  "Better Link Prediction for Protein-Protein Interaction Networks", アメリカ合衆国, 国内外の国際的学術賞

  Ho Yin Yuen, Jesper Jansson

外部資金：科学研究費補助金

• Phylogenetic Network Simplification

  基盤研究(B)

  小区分60010:情報学基礎論関連

  京都大学

  ジャンソン ジェスパー

  自 2022年04月01日, 至 2025年03月31日, 交付

  algorithm;computational complexity;phylogenetic network;distance functions;structural parameters;MUL-tree;pruning;phylogenetics

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-23K24807/
• Phylogenetic Network Simplification

  基盤研究(B)

  小区分60010:情報学基礎論関連

  京都大学

  ジャンソン ジェスパー

  自 2022年04月01日, 至 2025年03月31日, 交付

  algorithm;computational complexity;phylogenetic network;distance functions;structural parameters;MUL-tree;pruning;phylogenetics

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-22H03550/
• Fast Graph Algorithms for Phylogenetics

  基盤研究(C)

  京都大学

  ジャンソン ジェスパー

  自 2014年04月01日, 至 2018年03月31日, 完了

  Algorithm theory;Computational complexity;Implementations;Graph algorithms;Phylogenetic tree;Consensus tree;Supertree;algorithm;computational complexity;phylogenetic tree;consensus tree

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-26330014/
• Ｃｏｍｐａｒｉｎｇ　ａｎｄ　Ｃｏｍｂｉｎｉｎｇ　Ｔｒｅｅｓ

  若手研究(B)

  京都大学;お茶の水女子大学

  ジャンソン ジェスパー

  自 2011年04月01日, 至 2014年03月31日, 完了

  アルゴリズム;計算複雑さ;系統樹;algorithm;computational complexity;phylogenetic tree;consensus tree;rooted triplet distance;計算複雑性;順序木;超系統樹;合意樹;類似度

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-23700011/
• Matrix multiplication via 3D partitioning

  挑戦的研究(萌芽)

  中区分60:情報科学、情報工学およびその関連分野

  京都大学

  ジャンソン ジェスパー

  自 2024年06月28日, 至 2027年03月31日, 採択

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-24K22294/
• Matrix multiplication via 3D partitioning

  挑戦的研究(萌芽)

  中区分60:情報科学、情報工学およびその関連分野

  京都大学

  ジャンソン ジェスパー

  自 2024年06月28日, 至 2027年03月31日, 交付

  algorithm;time complexity;matrix multiplication;histogram;partitioning

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-24K22294/

教育

担当科目

• 自 2021年04月01日, 至 2022年03月31日

  Introduction to Formal Languages-E2

  T065, 前期, 国際高等教育院
• 自 2021年04月01日, 至 2022年03月31日

  Introduction to Formal Languages-E2

  T065, 後期, 国際高等教育院
• 自 2022年04月01日, 至 2023年03月31日

  Introduction to Formal Languages-E2

  T065, 前期, 国際高等教育院, 2
• 自 2022年04月01日, 至 2023年03月31日

  Introduction to Formal Languages-E2

  T065, 後期, 国際高等教育院, 2
• 自 2023年04月01日, 至 2024年03月31日

  Introduction to Formal Languages-E2

  T065, 前期, 国際高等教育院, 2
• 自 2023年04月01日, 至 2024年03月31日

  Introduction to Formal Languages-E2

  T065, 後期, 国際高等教育院, 2
• 自 2024年04月01日, 至 2025年03月31日

  Introduction to Formal Languages-E2

  T065, 前期, 国際高等教育院, 2
• 自 2024年04月01日, 至 2025年03月31日

  Introduction to Formal Languages-E2

  T065, 後期, 国際高等教育院, 2
• 自 2021年04月01日, 至 2022年03月31日

  Introduction to Algorithms-E2

  T052, 前期, 国際高等教育院
• 自 2021年04月01日, 至 2022年03月31日

  Introduction to Algorithms-E2

  T052, 後期, 国際高等教育院
• 自 2022年04月01日, 至 2023年03月31日

  Introduction to Algorithms-E2

  T052, 前期, 国際高等教育院, 2
• 自 2022年04月01日, 至 2023年03月31日

  Introduction to Algorithms-E2

  T052, 後期, 国際高等教育院, 2
• 自 2023年04月01日, 至 2024年03月31日

  Introduction to Algorithms-E2

  T052, 前期, 国際高等教育院, 2
• 自 2023年04月01日, 至 2024年03月31日

  Introduction to Algorithms-E2

  T052, 後期, 国際高等教育院, 2
• 自 2024年04月01日, 至 2025年03月31日

  Introduction to Algorithms-E2

  T052, 前期, 国際高等教育院, 2
• 自 2024年04月01日, 至 2025年03月31日

  Introduction to Algorithms-E2

  T052, 後期, 国際高等教育院, 2
• 自 2021年04月01日, 至 2022年03月31日

  アルゴリズムと情報学入門

  M307, 前期, 国際高等教育院
• 自 2022年04月01日, 至 2023年03月31日

  Introduction to Algorithms and Informatics

  M307, 前期, 国際高等教育院, 2
• 自 2023年04月01日, 至 2024年03月31日

  Introduction to Algorithms and Informatics

  M307, 前期, 国際高等教育院, 2
• 自 2024年04月01日, 至 2025年03月31日

  Introduction to Algorithms and Informatics

  M307, 前期, 国際高等教育院, 2
• 自 2021年04月01日, 至 2022年03月31日

  アルゴリズムと情報学入門

  3618, 前期, 情報学研究科, 2
• 自 2022年04月01日, 至 2023年03月31日

  アルゴリズムと情報学入門

  3618, 前期, 情報学研究科, 2
• 自 2023年04月01日, 至 2024年03月31日

  アルゴリズムと情報学入門

  3618, 前期, 情報学研究科, 2
• 自 2024年04月01日, 至 2025年03月31日

  アルゴリズムと情報学入門

  3618, 前期, 情報学研究科, 2
• 自 2021年04月01日, 至 2022年03月31日

  計算量理論

  3614, 後期, 情報学研究科, 2
• 自 2022年04月01日, 至 2023年03月31日

  計算量理論

  3614, 後期, 情報学研究科, 2
• 自 2023年04月01日, 至 2024年03月31日

  計算量理論

  3614, 後期, 情報学研究科, 2
• 自 2024年04月01日, 至 2025年03月31日

  計算量理論

  3614, 後期, 情報学研究科, 2
• 自 2021年04月01日, 至 2022年03月31日

  情報学展望5

  8045, 後期, 情報学研究科, 2
• 自 2022年04月01日, 至 2023年03月31日

  情報学展望５

  8045, 後期, 情報学研究科, 2
• 自 2023年04月01日, 至 2024年03月31日

  情報学展望５

  8045, 後期, 情報学研究科, 2
• 自 2024年04月01日, 至 2025年03月31日

  情報学展望５

  8045, 後期, 情報学研究科, 2

学外学位論文審査

• On Phylogenetic Encodings and Orchard Networks

  Yukihiro Murakami, TU Delft, The Netherlands, 副査

  2021年11月29日
• Dynamic and Probabilistic Models in Optimization: Algorithms for Combinatorial Problems with Applications in Machine Learning

  Bo Wang, The University of Hong Kong (HKU), China, 副査

  2024年01月10日