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Ophinni, Youdiil

The HAKUBI Center for Advanced Research Program-Specific Assistant Professor

Ophinni, Youdiil
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    Last Updated :2026/01/28

    Basic Information

    Concurrent Affiliation

    • Center for Southeast Asian Studies (CSEAS), Division of Environmental Coexistence, Program-specific Assistant Professor

    Email Address

    • Email Address

      ophinni.youdiil.5dkyoto-u.ac.jp

    Professional Memberships

    • From Oct. 2011, To Present
      Indonesian Physician Association
    • From May 2019, To Apr. 2020
      International AIDS Society
    • From Oct. 2017, To Sep. 2018
      European AIDS Clinical Society
    • From Jul. 2012, To Sep. 2014
      Indonesian Association of Physicians in AIDS Care
    • From Aug. 2024, To Present
      The Japanese Society for Virology
    • From Nov. 2018, To Oct. 2019
      The Molecular Biology Society of Japan
    • From Oct. 2016, To Sep. 2017
      The Japanese Society for Virology

    Academic Degree

    • 09 Aug. 2011
      Medical Doctor (M.D.) (Universitas Indonesia)
    • 25 Sep. 2018
      Doctor of Philosophy (Ph.D., Medical Science) (Kobe University)

    Academic Resume (Graduate Schools)

    • Kobe University, Graduate School of Medicine, Medical Science, Graduated

    Academic Resume (Undergraduate School/Majors)

    • Universitas Indonesia, Faculty of Medicine, Graduated

    High School

    • High School

      SMA Negeri 8 Jakarta

    Research History

    • From Sep. 2011, To Sep. 2014
      Cipto Mangunkusumo Hospital of University of Indonesia, HIV Integrated Service Unit, Research Physician
    • From Sep. 2012, To Jul. 2014
      Sukapura Islamic Hospital, Physician
    • From Sep. 2011, To Aug. 2012
      Cikijing Puskesmas (community health center), General Practitioner
    • From Sep. 2011, To Aug. 2012
      Majalengka District Hospital, General Practitioner
    • From Apr. 2024, To Present
      Kobe University, Graduate School of Medicine Center for Infectious Diseases, Visiting Researcher
    • From Apr. 2024, To Present
      Osaka University, WPI Immunology Frontier Research Center, Visiting Researcher
    • From Apr. 2024, To Present
      Kyoto University, The Hakubi Center for Advanced Studies, Program-specific Assistant Professor
    • From May 2023, To Mar. 2024
      Kyoto University, Center for Southeast Asian Studies, Affiliated Assistant Professor
    • From May 2023, To Oct. 2023
      Center for Infectious Diseases, Graduate School of Medicine, Kobe University, Division of Clinical Virology, Program-specific Assistant Professor
    • From Aug. 2021, To Mar. 2023
      Immunology Frontier Research Center (IFReC) Osaka University, Host Defense, Specially Appointed Researcher
    • From Apr. 2020, To Jul. 2021
      Ragon Institute of MGH, MIT and Harvard, T Cell Immunotherapy (Allen Lab), Research Fellow
    • From Oct. 2018, To Mar. 2020
      Kobe University Graduate School of Medicine, Division of Molecular Medicine & Medical Genetics, Department of Pathology, Postdoctoral Researcher

    ID,URL

    researchmap URL

    list
      Last Updated :2026/01/28

      Research

      Research Interests

      • Infectious disease
      • Virology
      • Metaviromics
      • HIV/AIDS
      • Zoonosis/anthroponosis
      • Vaccinology
      • Harm reduction
      • Substance use
      • Indonesia area studies
      • Area genomics
      • Metagenomics
      • Gene editing
      • CRISPR-Cas
      • Viral vector
      • Innate immunity
      • T cell immunity
      • Flowcytometry

      Research Areas

      • Life sciences, Infectious disease
      • Life sciences, Virology
      • Life sciences, Genomics
      • Other, Other, Area study
      • Life sciences, Healthcare management, medical sociology
      • Life sciences, Immunology
      • Life sciences, Molecular biology
      • Life sciences, Biomedical engineering

      Papers

      • Drosophila melanogaster as a prospective model organism for monkeypox virus research
        Mukarram Mudjahid; Andri Frediansyah; Youdiil Ophinni; Firzan Nainu
        Frontiers in Microbiology, 16 Dec. 2025, Peer-reviewed, Corresponding author
      • Longitudinal changes in immune biomarkers following direct‐acting antiviral therapy in HIV/HCV‐coinfected individuals in Indonesia
        Evy Yunihastuti; Youdiil Ophinni; Vidya Sari; Imam Adli; Chika Yamada; Alvina Widhani; Andri Sanityoso; Rino Alvani Gani
        Journal of Medical Virology, 06 Oct. 2025, Peer-reviewed, Lead author
      • Drosophila-based screening of herbal compounds targeting FOXO signaling pathway in type 2 diabetes mellitus
        Mukarram Mudjahid; Nadila Pratiwi Latada; Youdiil Ophinni; Firzan Nainu
        Frontiers in Pharmacology, 31 Jul. 2025, Peer-reviewed
      • High frequency CCR5 editing in human hematopoietic stem progenitor cells protects xenograft mice from HIV infection
        Daniel T. Claiborne; Zachary Detwiler; Steffen S. Docken; Todd D. Borland; Deborah Cromer; Amanda Simkhovich; Youdiil Ophinni; Ken Okawa; Timothy Bateson; Tao Chen; Wesley Hudson; Radiana Trifonova; Miles P. Davenport; Tony W. Ho; Christian L. Boutwell; Todd M. Allen
        Nature Communications, 07 Jan. 2025, Peer-reviewed
      • The role of heat shock proteins in HIV-1 pathogenesis: a systematic review investigating HSPs-HIV-1 correlations and interactions
        Chyntia Tresna Nastiti; Noer Halimatus Syakdiyah; R.M. Firzha Hawari; Youdiil Ophinni; Ni Luh Ayu Megasari
        PeerJ, 19 Sep. 2024, Peer-reviewed
      • Correction to: Suicidal ideation, psychopathology and associated factors among HIV-infected adults in Indonesia (BMC Psychiatry, (2020), 20, 1, (255), 10.1186/s12888-020-02666-1)
        Youdiil Ophinni; Adrian; Kristiana Siste; Martina Wiwie; Gina Anindyajati; Enjeline Hanafi; Reza Damayanti; Yoshitake Hayashi
        BMC Psychiatry, 01 Dec. 2020
      • Relapse prevention group therapy in Indonesia involving peers via videoconferencing for substance use disorder: development and feasibility study
        Kristiana Siste; Youdiil Ophinni; Enjeline Hanafi; Chika Yamada; Reza Novalino; Albert P Limawan; Evania Beatrice; Vania Rafelia; Peter Alison; Toshihiko Matsumoto; Ryota Sakamoto
        JMIR Formative Research, 18 Jun. 2024, Peer-reviewed, Lead author
      • Efficacy, immunogenicity, and safety of COVID-19 vaccines in patients with autoimmune diseases: a systematic review and meta-analysis
        Alvina Widhani; Anshari Saifuddin Hasibuan; Retia Rismawati; Suzy Maria; Sukamto Koesnoe; Muhammad Ikrar Hermanadi; Youdiil Ophinni; Chika Yamada; Kuntjoro Harimurti; Aldean Nadhyia Laela Sari; Evy Yunihastuti; Samsuridjal Djauzi
        Vaccines, 04 Sep. 2023, Peer-reviewed
      • Monkeypox: immune response, vaccination and preventive efforts
        Youdiil Ophinni; Andri Frediansyah; Salin Sirinam; Dewi Megawati; Ana M. Stoian; Seyi S. Enitan; Richard Y. Akele; Ranjit Sah; Krit Pongpirul; Ziad Abdeen; Sevda Aghayeva; Aamer Ikram; Yohannes Kebede; Uwe Wollina; Kannan Subbaram; Ai Koyanagi; Abdulwahed Al Serouri; H. Blaise Nguendo-Yongsi; Jeffrey Edwards; Dina E. Sallam; Yousef Khader; Sandro G. Viveiros-Rosa; Ziad A. Memish; Mehrdad Amir-Behghadami; Sandro Vento; Marius Rademaker; Malik Sallam
        Narra J, 22 Oct. 2022, Peer-reviewed, Invited, Lead author
      • Monkeypox: a comprehensive review
        Harapan, H.; Ophinni, Y.; Megawati, D.; Frediansyah, A.; Mamada, S.S.; Salampe, M.; Bin Emran, T.; Winardi, W.; Fathima, R.; Sirinam, S.; Sittikul, P.; Stoian, A.M.; Nainu, F.; Sallam, M.
        Viruses, 29 Sep. 2022, Peer-reviewed
      • Perceived risk of infection and death from COVID-19 among community members of low- and middle-income countries: a cross-sectional study
        Mahir Gachabayov; Khan Sharun; Daniel M. Felsenreich; Firzan Nainu; Samsul Anwar; Amanda Yufika; Youdiil Ophinni; Chika Yamada; Marhami Fahriani; Milda Husnah; Rawan Raad; Namareg ME. Khiri; Rashed YA. Abdalla; Rashed Y. Adam; Mohajer IH. Ismaeil; Asma Y. Ismail; Wajdi Kacem; Zeineb Teyeb; Khaoula Aloui; Montacer Hafsi; Manel Ferjani; Nasrine Ben Hadj Dahman; Dalia A. Deeb; Dina Emad; Kirellos Said Abbas; Fatma A. Monib; Farah S. Sami; Subramaniam Ramanarayanan; Suhrud Panchawagh; Sunil Anandu; Md Ariful Haque; Lirane ED. Ferreto; María FC. Briones; Rocío BI. Morales; Sebastián Lazcano-Díaz; José TO. Aburto; Jorge ET. Rojas; Emmanuel O. Balogun; Hendrix I. Kusuma; Cut Meurah Yeni; Niken Asri Utami; Seyi S. Enitan; Akele R. Yomi; Abiodun Durosinmi; Esther N. Adejumo; Eyiuche D. Ezigbo; Elham Babadi; Edris Kakemam; Irfan Ullah; Najma I. Malik; Francesco Rosiello; Talha B. Emran; Eva Imelda; Guilherme W. Wendt; Morteza Arab-Zozani; Kuldeep Dhama; Mudatsir Mudatsir; Harapan Harapan
        F1000Research, 07 Sep. 2022, Peer-reviewed
      • Molnupiravir: a lethal mutagenic drug against rapidly mutating severe acute respiratory syndrome coronavirus 2—A narrative review
        Masyeni, S.; Iqhrammullah, M.; Frediansyah, A.; Nainu, F.; Tallei, T.; Emran, T.B.; Ophinni, Y.; Dhama, K.; Harapan, H.
        Journal of Medical Virology, 21 Mar. 2022, Peer-reviewed
      • Psychotherapy co-provision by peers and healthcare workers for substance use disorders in Indonesia
        Chika Yamada; Youdiil Ophinni
        Japan-ASEAN Transdisciplinary Studies Working Paper Series, Mar. 2022, Peer-reviewed
      • Beliefs on social distancing and face mask practices during the COVID-19 pandemic in low- and middle-income countries: a cross-sectional study [version 1; peer review: 1 approved, 1 approved with reservations]
        Harapan Harapan; Amanda Yufika; Samsul Anwar; Youdiil Ophinni; Chika Yamada; Khan Sharun; Mahir Gachabayov; Marhami Fahriani; Milda Husnah; Rawan Raad; Namareg ME. Khiri; Rashed YA Abdalla; Wajdi Kacem; Zeineb Teyeb; Khaoula Aloui; Manel Ferjani; Dalia A. Deeb; Dina Emad; Kirellos S Abbas; Suhrud Panchawagh; Sunil Anandu; Md Ariful Haque; Lirane ED. Ferreto; María FC. Briones; Rocío BI. Morales; Sebastián Lazcano-Díaz; Abiodun Durosinmi; Esther N. Adejumo; Elham Babadi; Edris Kakemam; Irfan Ullah; Najma I. Malik; Francesco Rosiello; Talha B. Emran; Firzan Nainu; Guilherme W. Wendt; Morteza Arab-Zozani; Abram L. Wagner; Mudatsir Mudatsir
        F1000Research, 17 Feb. 2022, Peer-reviewed
      • Global prevalence of persistent neuromuscular symptoms and the possible pathomechanisms in COVID-19 recovered individuals: A systematic review and meta-analysis
        Jhonny K. Fajar; Muhammad Ilmawan; Sukamto Mamada; Endang Mutiawati; Milda Husnah; Hanifah Yusuf; Firzan Nainu; Salin Sirinam; Synat Keam; Youdiil Ophinni; Francesco Rosiello; Marhami Fahriani; Sandro GV. Rosa
        Narra J, 01 Dec. 2021
      • Designing an epitope vaccine against Dermatophagoides pteronyssinus: an in silico study
        Aryani Adji; Nurdjannah J. Niode; Ventje V. Memah; Jimmy Posangi; Greta J.P. Wahongan; Youdiil Ophinni; Rinaldi Idroes; Shafi Mahmud; Talha Bin Emran; Firzan Nainu; Trina E. Tallei; Harapan Harapan
        Acta Tropica, Oct. 2021, Peer-reviewed
      • Relapse prevention group therapy via video-conferencing for substance use disorder: protocol for a multicentre randomised controlled trial in Indonesia
        Chika Yamada; Kristiana Siste; Enjeline Hanafi; Youdiil Ophinni; Evania Beatrice; Vania Rafelia; Peter Alison; Albert Limawan; Tomohiro Shinozaki; Toshihiko Matsumoto; Ryota Sakamoto
        BMJ Open, Sep. 2021, Peer-reviewed, Lead author
      • Persistence of long COVID symptoms in COVID-19 survivors worldwide and its potential pathogenesis: a systematic review and meta-analysis
        Marhami Fahriani; Muhammad Ilmawan; Jonny K. Fajar; Helnida A. Maliga; Andri Frediansyah; Sri Masyeni; Hanifah Yusuf; Firzan Nainu; Francesco Rosiello; Salin Sirinam; Synat Keam; Youdiil Ophinni
        Narra J, 01 Aug. 2021, Peer-reviewed
      • Global prevalence of prolonged gastrointestinal symptoms in COVID-19 survivors and potential pathogenesis: a systematic review and meta-analysis
        Fauzi Yusuf; Marhami Fahriani; Sukamto S. Mamada; Andri Frediansyah; Azzaki Abubakar; Desi Maghfirah; Jonny Karunia Fajar; Helnida Anggun Maliga; Muhammad Ilmawan; Talha Bin Emran; Youdiil Ophinni; Meutia Rizki Innayah; Sri Masyeni; Abdulla Salem Bin Ghouth; Hanifah Yusuf; Kuldeep Dhama; Firzan Nainu; Harapan Harapan
        F1000Research, 19 Apr. 2021, Peer-reviewed
      • Anosmia and dysgeusia in SARS-CoV-2 infection: incidence and effects on COVID-19 severity and mortality, and the possible pathobiology mechanisms - a systematic review and meta-analysis
        Endang Mutiawati; Marhami Fahriani; Sukamto S. Mamada; Jonny Karunia Fajar; Andri Frediansyah; Helnida Anggun Maliga; Muhammad Ilmawan; Talha Bin Emran; Youdiil Ophinni; Ichsan Ichsan; Nasrul Musadir; Ali A. Rabaan; Kuldeep Dhama; Syahrul Syahrul; Firzan Nainu; Harapan Harapan
        F1000Research, 21 Jan. 2021, Peer-reviewed
      • COVID-19 vaccines: current status and implication for use in Indonesia
        Youdiil Ophinni
        Acta Medica Indonesiana, 30 Dec. 2020, Peer-reviewed, Invited, Lead author, Corresponding author
      • Suicidal ideation, psychopathology and associated factors among HIV-infected adults in Indonesia
        Youdiil Ophinni; Adrian; Kristiana Siste; Martina Wiwie; Gina Anindyajati; Enjeline Hanafi; Reza Damayanti; Yoshitake Hayashi
        BMC Psychiatry, Dec. 2020, Peer-reviewed, Lead author
      • Multiplexed tat-targeting CRISPR-Cas9 protects T cells from acute HIV-1 infection with inhibition of viral escape
        Youdiil Ophinni; Sayaka Miki; Yoshitake Hayashi; Masanori Kameoka
        Viruses, 28 Oct. 2020, Peer-reviewed, Lead author, Corresponding author
      • Characterization of HIV-1 CRF01_AE env genes derived from recently infected Indonesian individuals
        Maho Sasaki; Tomohiro Kotaki; Siti Qamariyah Khairunisa; Shingo Tachibana; Youdiil Ophinni; Yoshitake Hayashi; Nasronudin; Masanori Kameoka
        AIDS Research and Human Retroviruses, 01 Mar. 2020, Peer-reviewed
      • piRNA-guided CRISPR-like immunity in eukaryotes
        Ophinni, Y.; Palatini, U.; Hayashi, Y.; Parrish, N.F.
        Trends in Immunology, 31 Oct. 2019, Peer-reviewed, Lead author
      • Frailty among HIV-1 infected adults under antiretroviral therapy in Indonesia
        Wulunggono Wulunggono; Evy Yunihastuti; Hamzah Shatri; Edy Rizal Wahyudi; Youdiil Ophinni
        Current HIV Research, 23 Oct. 2019, Peer-reviewed
      • CRISPR/Cas9 targeting HIV-1 regulatory genes inactivates latent proviral DNA and prevents new infection in T cell culture with inhibition of viral escape
        Y. Ophinni; M. Inoue; T. Kotaki; M. Kameoka; Y. Hayashi
        Journal of Virus Eradication, Jul. 2019, Peer-reviewed, Lead author
      • CRISPR/Cas9 system targeting regulatory genes of HIV-1 inhibits viral replication in infected T-cell cultures
        Youdiil Ophinni; Mari Inoue; Tomohiro Kotaki; Masanori Kameoka
        Scientific Reports, Dec. 2018, Peer-reviewed, Lead author
      • A 2-4-amino acid deletion in the V5 region of HIV-1 Env gp120 confers viral resistance to the broadly neutralizing human monoclonal antibody, VRC01
        Youdiil Ophinni
        AIDS Research and Human Retroviruses, 17 Oct. 2017, Peer-reviewed

      Misc.

      • New staff: Youdiil Ophinni
        Youdiil Ophinni
        CSEAS Newsletter, 10 Jul. 2024, Invited
      • Cryptographic footprints of life: deciphering organismal encounters through area genomics
        Youdiil Ophinni
        CSEAS Newsletter, 11 Sep. 2024, Peer-reviewed, Invited, Lead author
      • Identification of human-to-primates viral spillover in Southeast Asia
        Youdiil Ophinni; Chika Yamada; Michiko Fujisawa; Ryota Sakamoto; Hidayat; Wataru Yamazaki
        FY2023 Report of Research Unit for Realization of Sustainable Society Kyoto University, Mar. 2024, Lead author
      • Development of wastewater-based epidemiology fo psychoactive substance in Japan
        Chika Yamada; Haruka Takeuchi; Ryota Sakamoto; Youdiil Ophinni; Toshihiko Matsumoto
        FY2022 Report of Research Unit for Realization of Sustainable Society Kyoto University, Mar. 2023
      • Strategies for sustainable social inclusion of people who use drugs in Southeast Asia
        Chika Yamada; Ryota Sakamoto; Kristiana Siste; Enjeline Hanafi; Youdiil Ophinni; Tomohiro Shinozaki; Toshihiko Matsumoto
        FY2021 Report of Research Unit for Realization of Sustainable Society Kyoto University, Mar. 2022
      • Feasibility of tele-delivered cognitive behavioral therapy for substance use disorders
        Chika Yamada; Ryota Sakamoto; Kristiana Siste; Enjeline Hanafi; Youdiil Ophinni; Tomohiro Shinozaki; Toshihiko Matsumoto
        FY2020 Report of Research Unit for Realization of Sustainable Society Kyoto University, Mar. 2021
      • SARS-CoV-2 mutation and dissemination in Southeast Asia: implications for a prospective vaccine
        Youdiil Ophinni
        CSEAS Newsletter, 05 Jun. 2020, Peer-reviewed, Invited, Lead author

      Presentations

      • Disasters and responses in each country and region: The Indonesian case
        Youdiil Ophinni
        Japan Society for Southeast Asian Studies Research Meeting: Social Resilience in the Wake of the 2025 Southeast Asia Heavy Rainfall Disasters, 24 Dec. 2025, Japan Society for Southeast Asian Studies, Invited
      • Nutritional stress or dietary restriction? Nutrition role in immunity and viral infectious disease
        Youdiil Ophinni
        Guest Lecture, Faculty of Medicine, Public Health, and Nursing, Universitas Gadjah Mada, 18 Nov. 2025, Universitas Gadjah Mada, Invited
      • CRISPR-Cas9 to cure HIV-1 infection: from bench to bedside
        Youdiil Ophinni
        15th Asia-Pacific Conference of Human Genetics (APCHG), 07 Nov. 2025, Asia Pacific Society Human Genetics (APSHG)
      • CRISPR-Cas gene editing to cure HIV: from bench to bedside
        Youdiil Ophinni
        65th Indonesian Medical Education and Research Institute (IMERI) Innovation Meeting, 22 Oct. 2025, Universitas Indonesia, Invited
      • Socio-ecological effect of pharmaceutical water pollution on aquatic biodiversity and coastal communities in Indonesia
        Youdiil Ophinni; Chika Yamada
        Toyota Foundation Grant Award Ceremony and Kickoff Meeting for the Research Grant Program 2025 “Interlinkages and Innovation for Future Societies”, 21 Oct. 2025, The Toyota Foundation, Invited
      • Integrating ground-based observations and remote sensing for LULCC analysis around Indonesia’s new capital city, Nusantara
        Shindai Kanai; Ulfah Karmila Sari; Youdiil Ophinni; Osamu Kozan
        22nd Annual Meeting of the Asia Oceania Geosciences Society, 29 Jul. 2025, Asia Oceania Geosciences Society
      • Policy diffusion mechanism and the roles of local governance and civil society: The case of harm reduction in Indonesia
        Chika Yamada; Dellvin Sergio; Youdiil Ophinni
        Global Collaborative Research research meeting, 10 Sep. 2025, Center for Southeast Asian Studies, Kyoto University, Invited
      • One Health approach in managing viral diseases
        Youdiil Ophinni; Chika Yamada
        Guest Lecture, Faculty of Animal Husbandry, Sam Ratulangi University, 25 Aug. 2025, Sam Ratulangi University, Invited
      • Transdisciplinarity at the intersection of health and ecology: Insights from area studies
        Youdiil Ophinni
        Guest Lecture, Faculty of Medicine and Health Sciences, Universitas Muhammadiyah Yogyakarta, 28 Jun. 2025, Universitas Muhammadiyah Yogyakarta, Invited
      • Centering harm reduction in Jakarta, Indonesia: The life story of a pioneering activist
        Chika Yamada; Youdiil Ophinni
        10th International Conference on the History of Medicine in Southeast Asia (HOMSEA), 26 Jun. 2025, History of Medicine in Southeast Asia
      • High-dimensional flow cytometry for translational research in cellular immunology and host defense
        Youdiil Ophinni
        Guest Lecture, Faculty of Medicine, Universitas Indonesia, 19 Jun. 2025, Universitas Indonesia, Invited
      • CRISPR gene editing in CAR T cells for infection and immunotherapy: current updates
        Youdiil Ophinni
        Jakarta Clinical Allergy and Immunology Network 2025 Symposium, 15 Jun. 2025, Jakarta Clinical Allergy and Immunology Network (JACIN), Invited
      • Reimagining harm reduction through its genealogy in Indonesia
        Chika Yamada; Youdiil Ophinni
        28th Harm Reduction International Conference, 28 Apr. 2025, Harm Reduction International
      • Identification of human-to-primates viral spillover in Indonesia
        Youdiil Ophinni
        Research meeting of the Center for the Evolutionary Origins of Human Behavior, 20 Dec. 2024, Invited
      • CRISPR-Cas to cure HIV infection: Bridging basic science and clinical application
        Youdiil Ophinni
        Guest Lecture, Faculty of Pharmacy, Hasanuddin University, 05 Dec. 2024, Invited
      • Gene editing to cure HIV infection: Bridging basic science, translational research, and clinical application
        Youdiil Ophinni
        International Symposium: Interdisciplinary Perspectives in Biomedical Research, 19 Nov. 2024, Sam Ratulangi University, Invited
      • Advancing HIV-1 cure using CRISPR-Cas9: From cell culture to human stem cells and humanized mice
        Youdiil Ophinni; Todd Mackenzie Allen; Masanori Kameoka
        The 71st Annual Meeting of the Japanese Society for Virology, 05 Nov. 2024, The Japanese Society for Virology
      • Applications of CRISPR-Cas systems in infectious disease management
        Youdiil Ophinni
        6th Scientific Health Seminar of Clinical Laboratory Experts (SIKLIK), 02 Nov. 2024, Airlangga University, Invited
      • Sense of belonging in substance use disorder
        Youdiil Ophinni
        Guest Lecture, School of Medicine and Health Sciences, Atma Jaya Catholic University of Indonesia, 19 Aug. 2024, Invited
      • Efektivitas terapi perilaku kognitif online dalam tatalaksana pasien dengan gangguan penyalahgunaan zat di Indonesia: sebuah uji randomisasi klinis (Effectiveness of online cognitive behavioral therapy in the management of patients with substance abuse disorders in Indonesia: a randomized clinical trial)
        Siste, K; Yamada, C; Hanafi, E; Ophinni, Y; Matsumoto, T; Sakamoto, R; Sieto, N. L; Beatrice, E; Rafelia, V; Alison, P; Siswidiani, L. P; Putri, I. K; Adrian; Sari, M. P; Harianja, F
        2022 National Congress of Indonesian Psychiatrists Association, 25 Nov. 2022
      • Indo-DARPP: Psikoterapi untuk gangguan penggunaan zat berbasis komunitas dan pengaplikasian daring pada pandemi COVID-19 (Indo-DARPP: Community-based psychotherapy for substance use disorders and online applications during the COVID-19 pandemic)
        Chika Yamada; Youdiil Ophinni
        Technical Working Meeting of the Rehabilitation Division, National Narcotics Board of Indonesia, 30 Aug. 2022
      • Advancing HIV/AIDS cure using CRISPR-Cas9: From cell culture to humanized mice and human stem cells
        Youdiil Ophinni
        Guest Lecture of Postgraduate Students in Universitas Indonesia, Faculty of Medicine, Department of Microbiology & Clinical Microbiology, 26 Jun. 2024, Invited
      • One Health approach to infectious diseases: Viral metagenomic analyses from Indonesia
        Youdiil Ophinni
        Research Units Exploring Future Horizons Report Meeting, 08 Jun. 2024, Kyoto University Research Coordination Alliance, Invited
      • Urban living in Indonesia in the era of climate crisis
        Youdiil Ophinni; Chika Yamada
        Guest Lecture, Airlangga University Postgraduate Summer School, 04 Jun. 2024, Airlangga University, Invited
      • Reimagining harm reduction through its genealogy in Indonesia
        Chika Yamada; Youdiil Ophinni
        1st International Conference on Drug Research and Policy, 14 May 2024
      • Gene editing to cure chronic viral infections: From in vitro to in vivo
        Youdiil Ophinni
        Guest Lecture of Postgraduate Students in Airlangga University, 14 Sep. 2023, Airlangga University, Invited
      • Eradicating HIV/AIDS with CRISPR-Cas: From in vitro to in vivo
        Youdiil Ophinni
        2023 Indonesian Diaspora Scientific Forum (FIDI): "Towards 2045, Unifying Indonesia's Scientific Excellence for an Advanced and Sustainable Nation", 25 Aug. 2023, Indonesia National Research and Innovation Agency, Invited
      • CRISPR-Cas9 to cure viral infection
        Youdiil Ophinni
        MSHG-InaSHG Joint Live Webinar, 24 Jul. 2022, Invited
      • Gene editing as a drug: CRISPR-Cas9 to cure viral infection
        Youdiil Ophinni
        4th International Conference on Bioinformatics, Biotechnology, and Biomedical Engineering (BioMIC) 2021, 06 Oct. 2021, Universitas Gadjah Mada, Invited
      • Evidence of telemedicine from a developing country during the COVID-19 pandemic: A virtual relapse prevention program among a clinical sample of substance use disorder patients
        Hanafi, E; Siste, K; Yamada, C; Ophinni, Y; Sakamoto, R; Limawan, A; Shinozaki, T; Matsumoto, T
        National Institute of Drug Abuse (NIDA) International Forum 2021, 23 Jun. 2021, National Institute of Drug Abuse (NIDA)
      • Cutting the virus: gene editing to cure chronic viral infection
        Youdiil Ophinni
        Guest Lecture Series of Doctoral Program in Medical Sciences Faculty of Medicine Universitas Indonesia, 03 Nov. 2020, Universitas Indonesia, Invited
      • Harnessing CRISPR/Cas9 gene editing to cure HIV-1 infection
        Youdiil Ophinni
        International Course for Health Sciences, 12 Sep. 2019, Kobe University Graduate School of Health Sciences, Invited
      • CRISPR/Cas9 system targeting HIV-1 regulatory genes prevents new infection in T cell culture with inhibition of viral escape
        Ophinni Y; Inoue M; Kotaki T; Kameoka M; Hayashi Y
        10th International AIDS Society Conference on HIV Science, 24 Jul. 2019, International AIDS Society
      • CRISPR/Cas9 system targeting regulatory genes of HIV-1 inhibits viral replication in infected T cell cultures
        Ophinni Y; Inoue M; Kotaki T; Kameoka M; Hayashi Y
        41st Annual Meeting of the Molecular Biology Society of Japan, 29 Nov. 2018, Molecular Biology Society of Japan
      • CRISPR/Cas9 system targeting HIV-1 regulatory genes tat and rev inhibits viral replication in persistently- and latently-infected cells
        Ophinni Y; Inoue M; Kameoka M
        16th European AIDS Conference, 26 Oct. 2017, European AIDS Clinical Society
      • CRISPR/Cas9 system targeting HIV-1 regulatory genes tat and rev successfully inhibits viral replication in persistently infected cells
        Ophinni Y; Inoue M; Kameoka M
        64th Annual Meeting of the Japanese Society for Virology, 25 Oct. 2016
      • CRISPR/Cas9 system targeting regulatory genes tat and rev successfully inhibits HIV-1 replication in persistently-infected cells
        Youdiil Ophinni; Mari Inoue; Norifumi Matake; Ami Matsumoto; Tomohiro Kotaki; Masanori Kameoka
        30th Kinki AIDS Research Society Annual Meeting, 04 Jun. 2016
      • Inactivation of integrated HIV-1 genome by gene editing technique with CRISPR/Cas 9 system
        Youdiil Ophinni
        Teleconference Research Seminar on Infectious Disease and Health Promotion of Kobe University, Airlangga University, and Chiang Mai University, 05 Feb. 2016, Invited
      • Outcomes of antiretroviral therapy re-initiation after unplanned stopping in patients with HIV infection
        Gebrina M; Putri RF; Wulunggono; Ophinni Y; Yunihastuti E
        8th Jakarta Allergy and Clinical Immunology Network (JACIN) Meeting Symposium, 15 Jun. 2013
      • Changes in renal function associated with tenofovir disoproxil fumarate
        Ophinni Y; Putri RF; Gebrina M; Wulunggono; Yunihastuti E
        8th Jakarta Allergy and Clinical Immunology Network (JACIN) Meeting Symposium, 15 Jun. 2013
      • Association between knowledge and drug adherence in patients with hypertension in West Java in 2012
        Neldy FA; Ophinni Y; Gebrina M; Hasibuan AS; Fitriani KF; Agustina DR; Ferdi; Gaol EL; Iskandar Y; Indrarespati A; Melita; Harris L; Faisha K
        12th Holistic Approaches in Cardiovascular Diseases Symposium (HOPECARDIS), 07 Jun. 2013
      • Prevalence of anemia related to zidovudine as first-line therapy in subjects with HIV/AIDS
        Wulunggono; Fanani RA; Gebrina M; Ophinni Y; Putri RF; Agustina DR; Nugraheni P; Pramudita RA; Nufus H; Yunihastuti E
        Clinical Research Meeting of Indonesian Association of Physicians in AIDS Care (PDPAI): Updates in HIV Medicine, 08 Dec. 2012
      • Body fat composition and distribution among HIV patients with long term antiretroviral therapy
        Ophinni Y; Kusumayanti RR; Nugroho W; Fanani RA; Pramudita RA; Nugraheni P; Agustina DR; Putri RF; Gebrina M; Wulunggono; Setiawan R; Sain A; Siregar NJ; Yunihastuti E
        Clinical Research Meeting of Indonesian Association of Physicians in AIDS Care (PDPAI): Updates in HIV Medicine, 08 Dec. 2012
      • Adherence to antiretroviral post-exposure prophylaxis and subsequent HIV testing among health care workers in Cipto Mangunkusumo hospital
        Pramudita RA; Nugraheni P; Nugroho W; Fanani RA; Ophinni Y; Yunihastuti E
        Annual Scientific Meeting of Internal Medicine of Indonesia, 13 Jul. 2012
      • Emotional and behavioral problems and their association with history of sexual abuse among street children in Central Jakarta, Indonesia
        Pangestu N; Savitri AI; Saidah F; Handoko Y; Siregar NN; Ophinni Y
        National Research Paper Competition of Liga Medika Sains, Indonesia, 24 Jul. 2008

      Books and Other Publications

      • Virus-Infected Cells
        Firzan Nainu; Youdiil Ophinni; Akiko Shiratsuchi; Yoshinobu Nakanishi, Joint work, Apoptosis and phagocytosis as antiviral mechanisms
        Springer Cham, Dec. 2023
      • Adult Immunization Guideline 2022
        Sukamto Koesnoe; Samsuridjal Djauzi; Evy Yunihastuti; Anshari Saifuddin Hasibuan; Youdiil Ophinni, Joint work, New SARS-CoV-2 variants and their influence toward COVID-19 vaccine efficacy; Development of COVID-19 vaccine; Development of HIV vaccine
        Interna Publishing, May 2022, Not refereed
      • Handbook of Social Inclusion, Research and Practices in Health and Social Sciences
        Chika Yamada; Youdiil Ophinni; Hervita Diatri, Joint work, Social Exclusion among People with Mental Health Conditions in Indonesia: The Case of Pasung
        Springer Nature, 11 Dec. 2021, Not refereed
      • Indonesia Drug Addiction Relapse Prevention Program (Indo-DARPP)
        Kristiana Siste; Chika Yamada; Enjeline Hanafi; Ryota Sakamoto; Youdiil Ophinni; Fumi Imamura; Toshihiko Matsumoto, Joint work
        Universitas Indonesia Publishing, Jan. 2021, Not refereed

      Awards

      • 15 May 2024
        最優秀口頭発表賞(ICDR,ICJR,インドネシアアトマジャヤカトリック大学)

      Media Coverage

      • Fighting two infections at once
        Kyoto University, 01 Dec. 2025, Internet
      • Fighting two infections at once: Curing hepatitis C can rebalance immunity in Indonesians living with HIV
        EurekAlert!, 26 Nov. 2025, Internet
      • New study uncovers immune recovery after hepatitis C treatment in people living with HIV in Indonesia
        Center for Southeast Asian Studies, Kyoto University, 16 Oct. 2025, Internet
      • Utilizing fruit flies to screen herbal compounds for type 2 diabetes mellitus
        Center for Southeast Asian Studies, Kyoto University, 20 Aug. 2025, Internet
      • Tele-group therapy for relapse prevention of substance use disorders in Indonesia: Development process and pilot study results
        Center for Southeast Asian Studies, Kyoto University, 26 Jun. 2024, Internet
      • Cryptographic footprints of life: deciphering organismal encounters through area genomics
        Center for Southeast Asian Studies, Kyoto University, 11 Sep. 2024, Internet
      • New staff: Youdiil Ophinni
        Center for Southeast Asian Studies, Kyoto University, 10 Jul. 2024, Internet
      • Review paper on piRNA antiviral immunity
        Kobe University, 28 Nov. 2019, Internet
      • Genome editing method targets AIDS virus
        Kobe University, 18 May 2018, Internet
      • エイズ「2030年終結」挑む [Challenge to end AIDS in 2030]
        Yomiuri Shimbun, Japan, 26 Oct. 2018, Paper
      • CRISPR eradicates latent HIV-1, offering hope of “functional cures”
        Mary Ann Liebert, Inc., GEN News, 21 May 2018, Internet

      External funds: Kakenhi

      • A One-Health metagenomic study of viruses at Indonesia's threatened human-nature interface
        Grant-in-Aid for Early-Career Scientists
        Basic Section 58020:Hygiene and public health-related: including laboratory approach
        Kyoto University
        オフィンニ ユディル
        From 01 Apr. 2024, To 31 Mar. 2026, Granted
        Metagenome;Cross-species;Zoonosis;Reverse zoonosis;Viral infection;One Health;Indonesia
      • Interdisciplinary analysis of drug use and its state control in Indonesia
        Grant-in-Aid for Scientific Research (B)
        Basic Section 80010:Area studies-related
        Kyoto University
        山田 千佳
        From 01 Apr. 2022, To 31 Mar. 2027, Granted
        アーカイブ;ハームリダクション;精神作用物質;下水疫学;インドネシア;薬物使用;社会史;統制
      • Generation of HIV-1 resistant T cells from induced pluripotent stem cell using CRISPR/Cas9 system
        Grant-in-Aid for Early-Career Scientists
        Basic Section 54030:Infectious disease medicine-related
        Osaka University;Kobe University
        オフィンニ ユディル
        From 01 Mar. 2021, To 31 Mar. 2023, Discontinued
        HIV-1;iPSC;CRISPR/Cas9;T cell;Feeder-free;Lentivirus
      • An Interdisciplinary One Health Approach to Inclusive Animal Infectious Disease Control in the Philippines
        Grant-in-Aid for Scientific Research (A)
        Medium-sized Section 4:Geography, cultural anthropology, folklore, and related fields
        Kyoto University
        山崎 渉
        From 01 Apr. 2024, To 31 Mar. 2029, Granted
        ワンヘルス;動物感染症;精神保健;スピルオーバ ー;アフリカ豚熱
      • Interdisciplinary analysis of drug use and its state control in Indonesia
        Grant-in-Aid for Scientific Research (B)
        Basic Section 80010:Area studies-related
        Kyoto University
        山田 千佳
        From 01 Apr. 2024, To 31 Mar. 2027, Granted
        社会運動;グローバル・ヘルス;薬物;ハーム・リダクション;インドネシア;下水疫学;アーカイブ;ハームリダクション;精神作用物質;逸脱;薬物使用;社会史;統制
      • Challenging Deviance at the Intersection of Social Activism, Global Health, and Coloniality in Indonesia
        Grant-in-Aid for Challenging Research (Exploratory)
        Medium-sized Section 4:Geography, cultural anthropology, folklore, and related fields
        Kyoto University
        山田 千佳
        From 27 Jun. 2025, To 31 Mar. 2028, Granted
        脱逸脱;社会運動;公衆衛生;薬物;HIV/AIDS
      list
        Last Updated :2026/01/28

        Education

        Teaching subject(s)

        • From 01 Apr. 2025, To 31 Mar. 2026
          Environment and Infection
          5107, Fall, Graduate School of Asian and African Area Studies, 2
        • From 01 Apr. 2025, To 31 Mar. 2026
          Environment and Infection
          H152, Fall, Graduate School of Medicine, 2
        list
          Last Updated :2026/01/28

          Academic, Social Contribution

          Committee Memberships

          • From Jan. 2025, To Present
            Guest Editor, Frontiers in Virology
          • From Apr. 2024, To Present
            Editor, Indonesian Internal Medicine Journal

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