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Honda, Shinnosuke
Graduate School of Agriculture, Division of Applied Biosciences Assistant Professor
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Last Updated :2025/07/18
Basic Information
Faculty
Academic Degree
Academic Resume (Graduate Schools)
- 京都大学, 大学院農学研究科博士後期課程応用生物科学専攻, 修了
- 京都大学, 大学院農学研究科博士後期課程応用生物科学専攻, 研究指導認定退学
- 京都大学, 大学院農学研究科修士課程応用生物科学専攻, 修了
Academic Resume (Undergraduate School/Majors)
Research History
- From Apr. 2019, To Mar. 2022日本学術振興会 特別研究員(DC1)
- From Apr. 2022, To PresentKyoto University, Graduate School of Agriculture, 助教
ID,URL
ORCID ID
J-Global ID
Researcher number
60964484
researchmap URL
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Last Updated :2025/07/18
Research
Research Topics, Overview of the research
Research Topics
Functional analysis of transposons expressed in mammalian embryos
Research Interests
- early embryo
- mammalian development
- developmental biology
- epigenetics
- endogenous retrovirus
- mammalian evolution
Research Areas
- Life sciences, Animal production science, 発生工学
- Life sciences, Evolutionary biology, mammalian evolution
- Life sciences, Developmental biology, mammalian early embryo development
Papers
- Transgenic Bax gene efficiently induces lethality in mouse early embryosYuzuki Goto; Takuto Yamamoto; Masahiro Sakata; Satoshi Mashiko; Daiki Shikata; Shinnosuke Honda; Naojiro Minami; Shuntaro Ikeda30 May 2025
- Endogenous retrovirus-driven Pcgf5 plays critical roles in zygotic genome activation and noncanonical imprintingSatoshi Mashiko; Takuto Yamamoto; Naojiro Minami; Shuntaro Ikeda; Shinnosuke Honda24 Jan. 2025
- NSUN5 is essential for proper cell proliferation and differentiation of mouse preimplantation embryosDan Liu; Takuto Yamamoto; Haoxue Wang; Naojiro Minami; Shinnosuke Honda; Shuntaro IkedaReproduction, 25 Apr. 2024
- Evaluating histone modification analysis of individual preimplantation embryos.Yiren Zeng; Yoichiro Hoshino; Kazuki Susami; Shinnosuke Honda; Naojiro Minami; Shuntaro IkedaBMC genomics, 18 Jan. 2024
- Chimeric PRMT6 protein produced by an endogenous retrovirus promoter regulates cell fate decision in mouse preimplantation embryos.Shinnosuke Honda; Maho Hatamura; Yuri Kunimoto; Shuntaro Ikeda; Naojiro MinamiBiology of reproduction, 09 Jan. 2024
- MYC-MAX heterodimerization is essential for the induction of major zygotic genome activation and subsequent preimplantation development.Takuto Yamamoto; Haoxue Wang; Hana Sato; Shinnosuke Honda; Shuntaro Ikeda; Naojiro MinamiScientific reports, 25 Sep. 2023
- Analysis of histone
H3K4me3 modifications in bovine placenta derived from different calf‐production methodsKanoko Hattori; Yoichiro Hoshino; Masayuki Kachi; Yasumitsu Masuda; Satoshi Yamamoto; Shinnosuke Honda; Naojiro Minami; Shuntaro IkedaReproduction in Domestic Animals, 09 Jan. 2024 - A more accurate analysis of maternal effect genes by siRNA electroporation into mouse oocytesTakuto YAMAMOTO; Shinnosuke HONDA; Issei IDEGUCHI; Motoki SUEMATSU; Shuntaro IKEDA; Naojiro MINAMIJournal of Reproduction and Development, 2023
- Genome-wide profiling of histone H3K4me3 and H3K27me3 modifications in individual blastocysts by CUT&Tag without a solid support (NON-TiE-UP CUT&Tag)Kazuki Susami; Shuntaro Ikeda; Yoichiro Hoshino; Shinnosuke Honda; Naojiro MinamiScientific Reports, 11 Jul. 2022
- H4K20 monomethylation inhibition causes loss of genomic integrity in mouse preimplantation embryos.Daiki Shikata; Takuto Yamamoto; Shinnosuke Honda; Shuntaro Ikeda; Naojiro MinamiThe Journal of reproduction and development, 13 Oct. 2020
- Membrane fusogenic high-density lipoprotein nanoparticles.Hyungjin Kim; Tomohiro Nobeyama; Shinnosuke Honda; Kaori Yasuda; Nobuhiro Morone; Tatsuya MurakamiBiochimica et biophysica acta. Biomembranes, 01 Oct. 2019
- Oocyte-specific gene Oog1 suppresses the expression of spermatogenesis-specific genes in oocytes.Shinnosuke Honda; Yuka Miki; Yuya Miyamoto; Yu Kawahara; Satoshi Tsukamoto; Hiroshi Imai; Naojiro MinamiThe Journal of reproduction and development, 20 Aug. 2018, Lead author
Presentations
- マウス初期胚発生におけるヒストンアルギニンメチル化酵素Prmt6の役割本多慎之介; 国本悠里; 池田俊太郎; 南直治郎第112回日本繁殖生物学会大会, 03 Sep. 2019
- The role of SMYD3 in methylation of H3K4 of Hmgpi promoter regions in mouse preimplantation embryosShinnosuke Honda; Shinnosuke Suzuki; Satoshi Tsukamoto; Takehito Kaneko; Hiroshi Imai; Naojiro Minami4th World Congress of Reproductive Biology, 28 Sep. 2017
- Studies on methylation of H3K4 of Hmgpi promoter regions by SMYD3 in mouse preimplantation embryosShinnosuke Honda; Shinnosuke Suzuki; Satoshi Tsukamoto; Takehito Kaneko; Hiroshi Imai; Naojiro Minami50th Annual Meeting of the Society for the Study of Reproduction, 13 Jul. 2017
- マウス着床前胚で発現するMERVLとPRMT6のキメラタンパク質は細胞分化を制御する本多慎之介; 池田俊太郎; 南直治郎第45回⽇本分⼦⽣物学会年会, 02 Dec. 2022
- マウス初期胚発生におけるType Iアルギニンメチル化酵素間の補完作用に関する研究本多慎之介; 池田俊太郎; 南直治郎第115回日本繁殖生物学会大会, 12 Sep. 2022
- ERVL-PRMT6 chimeric protein regulates cell fate decision in mouse preimplantation embryosShinnosuke Honda; Shuntaro Ikeda; Naojiro Minami55th Annual Meeting of the Society for the Study of Reproduction, 28 Jul. 2022
- Elucidation of translation control of histone arginine methyltransferase Prmt6 during early mouse embryogenesis.本多慎之介; 池田俊太郎; 南直治郎第114回日本繁殖生物学会大会, 22 Sep. 2021
- Role of Prmt6 and asymmetric dimethylation of H3R2 on mouse preimplantation embryosShinnosuke Honda; Yuri Kunimoto; Naojiro Minami52th Annual Meeting of the Society for the Study of Reproduction, 21 Jul. 2019
Awards
- 23 Sep. 2021優秀発表賞（日本繁殖生物学会）
- 21 Jul. 2019Best International Abstract Award（The Society for the Study of Reproduction）
- 01 Apr. 2019Journal of Reproduction and Development Outstanding Paper Award 2018
External funds: Kakenhi
- Comprehensive search for novel translational regions of transposon-derived chimeric mRNAs expressed in mammalian embryosGrant-in-Aid for Research Activity Start-up0605:Veterinary medical science, animal science, and related fieldsKyoto UniversityShinnosuke HondaFrom 31 Aug. 2022, To 31 Mar. 2024, Project Closedトランスポゾン;受精卵;胚性ゲノムの活性化;キメラ転写産物;哺乳類;進化;GTICT-seq;ロングリードシーケンス;キメラmRNA;哺乳類受精卵;CDS;ロングリードシーケンサー
- エレクトロポレーション法を用いたエピゲノム編集による哺乳類卵母細胞の質の向上Grant-in-Aid for Early-Career ScientistsBasic Section 42010:Animal production science-relatedKyoto University本多 慎之介From 01 Apr. 2023, To 31 Mar. 2026, Declined
- improvement of mammalian oocyte quality by epigenome editing with electroporationGrant-in-Aid for Early-Career ScientistsBasic Section 42010:Animal production science-relatedKyoto University本多 慎之介From 01 Apr. 2025, To 31 Mar. 2028, Grantedエレクトロポレーション;エピゲノム編集;卵母細胞;哺乳類
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Last Updated :2025/07/18
Education
Teaching subject(s)
- From 01 Apr. 2025, To 31 Mar. 2026Seminar for Reproductive BiologyDF13, Spring, Graduate School of Agriculture, 1.5
- From 01 Apr. 2025, To 31 Mar. 2026Seminar for Reproductive BiologyDF13, Fall, Graduate School of Agriculture, 1.5
- From 01 Apr. 2025, To 31 Mar. 2026Laboratory Course in Animal Science II5363, Fall, Faculty of Agriculture, 6
- From 01 Apr. 2025, To 31 Mar. 2026Laboratory Course in Animal Science I5361, Spring, Faculty of Agriculture, 6
- From 01 Apr. 2025, To 31 Mar. 2026Laboratory Course for Reproductive BiologyDG13, Spring, Graduate School of Agriculture, 3
- From 01 Apr. 2025, To 31 Mar. 2026Laboratory Course for Reproductive BiologyDG13, Fall, Graduate School of Agriculture, 3
- From 01 Apr. 2025, To 31 Mar. 2026Seminar for Applied Animal Science I5293, Year-long, Faculty of Agriculture, 2
- From 01 Apr. 2025, To 31 Mar. 2026Animal Science5699, Spring, Faculty of Agriculture, 2
- From 01 Apr. 2025, To 31 Mar. 2026Seminar for Applied Animal Science II5295, Year-long, Faculty of Agriculture, 2
- From 01 Apr. 2024, To 31 Mar. 2025Seminar for Reproductive BiologyDF13, Spring, Graduate School of Agriculture, 1.5
- From 01 Apr. 2024, To 31 Mar. 2025Seminar for Reproductive BiologyDF13, Fall, Graduate School of Agriculture, 1.5
- From 01 Apr. 2024, To 31 Mar. 2025Laboratory Course in Animal Science II5363, Fall, Faculty of Agriculture, 6
- From 01 Apr. 2024, To 31 Mar. 2025Laboratory Course in Animal Science I5361, Spring, Faculty of Agriculture, 6
- From 01 Apr. 2024, To 31 Mar. 2025Laboratory Course for Reproductive BiologyDG13, Fall, Graduate School of Agriculture, 3
- From 01 Apr. 2024, To 31 Mar. 2025Laboratory Course for Reproductive BiologyDG13, Spring, Graduate School of Agriculture, 3
- From 01 Apr. 2024, To 31 Mar. 2025Seminar for Applied Animal Science I5293, Year-long, Faculty of Agriculture, 2
- From 01 Apr. 2024, To 31 Mar. 2025Animal Science5699, Spring, Faculty of Agriculture, 2
- From 01 Apr. 2024, To 31 Mar. 2025Seminar for Applied Animal Science II5295, Year-long, Faculty of Agriculture, 2
- From 01 Apr. 2023, To 31 Mar. 2024Seminar for Reproductive Biology1DB30, Year-long, Graduate School of Agriculture, 3
- From 01 Apr. 2023, To 31 Mar. 2024Seminar for Reproductive Biology2DB31, Year-long, Graduate School of Agriculture, 3
- From 01 Apr. 2023, To 31 Mar. 2024Laboratory Course for Reproductive Biology1DC30, Year-long, Graduate School of Agriculture, 6
- From 01 Apr. 2023, To 31 Mar. 2024Laboratory Course for Reproductive Biology2DC31, Year-long, Graduate School of Agriculture, 6
- From 01 Apr. 2023, To 31 Mar. 2024Animal Science5699, Spring, Faculty of Agriculture, 2
- From 01 Apr. 2023, To 31 Mar. 2024Seminar for Applied Animal Science II5295, Year-long, Faculty of Agriculture, 2
- From 01 Apr. 2023, To 31 Mar. 2024Seminar for Applied Animal Science I5293, Year-long, Faculty of Agriculture, 2
- From 01 Apr. 2022, To 31 Mar. 2023Laboratory Course for Reproductive Biology2DC31, Year-long, Graduate School of Agriculture, 6
- From 01 Apr. 2022, To 31 Mar. 2023Seminar for Reproductive Biology1DB30, Year-long, Graduate School of Agriculture, 3
- From 01 Apr. 2022, To 31 Mar. 2023Laboratory Course for Reproductive Biology1DC30, Year-long, Graduate School of Agriculture, 6
- From 01 Apr. 2022, To 31 Mar. 2023Seminar for Reproductive Biology2DB31, Year-long, Graduate School of Agriculture, 3
