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Takada, Shoji

Graduate School of Science, Division of Biological Sciences Professor

Takada, Shoji
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    Last Updated :2025/04/23

    Basic Information

    Faculty

    • 理学部

    Academic Degree

    • 理学修士(京都大学)
    • 博士（理学）(総合研究大学院大学)

    Research History

    • From 2013, To Present
      京都大学理学研究科生物科学専攻生物物理教室 教授
    • From 2007, To 2013
      京都大学理学研究科生物科学専攻生物物理教室 准教授
    • From 2001, To 2006
      Kobe University, Faculty of Science
    • From 1998, To 2001
      Kobe University, Faculty of Science
    • From 1995, To 1998
      日本学術振興会研究員（イリノイ大学化学科）
    • From 1991, To 1995
      岡崎国立共同研究機構技官（分子科学研究所）

    ID,URL

    researchmap URL

    list
      Last Updated :2025/04/23

      Research

      Research Areas

      • Life sciences, Biophysics

      Papers

      • Molecular dynamics simulations of human cohesin subunits identify DNA binding sites and their potential roles in DNA loop extrusion
        Chenyang Gu; Shoji Takada; Giovanni B. Brandani; Tsuyoshi Terakawa
        PLOS Computational Biology, 04 Apr. 2025
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      • Modeling lipid-protein interactions for coarse-grained lipid and Cα protein models
        Diego Ugarte La Torre; Shoji Takada
        Journal of Chemical Physics, 21 Oct. 2021
      • Micelle-like clusters in phase-separated Nanog condensates: A molecular simulation study
        Azuki Mizutani; Cheng Tan; Yuji Sugita; Shoji Takada
        PLOS Computational Biology, 24 Jul. 2023
      • Using incomplete Cholesky factorization to increase the time step in molecular dynamics simulations
        Takumi Washio; Xiaoke Cui; Ryo Kanada; Jun-ichi Okada; Seiryo Sugiura; Yasushi Okuno; Shoji Takada; Toshiaki Hisada
        Journal of Computational and Applied Mathematics, Dec. 2022, Peer-reviewed
      • Histone chaperone Nap1 dismantles an H2A/H2B dimer from a partially unwrapped nucleosome
        Fritz Nagae; Shoji Takada; Tsuyoshi Terakawa
        Nucleic Acids Research, 13 May 2023
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      • Coarse-grained molecular dynamics simulations of base-pair mismatch recognition protein MutS sliding along DNA
        Keisuke Inoue; Shoji Takada; Tsuyoshi Terakawa
        Biophysics and Physicobiology, 2022
      • Particle Smoother to Assimilate Asynchronous Movie Data of High-Speed AFM with MD Simulations
        Suguru Kato; Shoji Takada; Sotaro Fuchigami
        Journal of Chemical Theory and Computation, 25 Jul. 2023, Peer-reviewed
      • Molecular dynamics simulations for the study of chromatin biology
        Giovanni B. Brandani; Soundhararajan Gopi; MasatakaYamauchi; Shoji Takada
        Current Opinion in Structural Biology, Oct. 2022, Peer-reviewed, Invited
      • Implementation of residue-level coarse-grained models in GENESIS for large-scale molecular dynamics simulations
        Cheng Tan; Jaewoon Jung; Chigusa Kobayashi; Diego Ugarte La Torre; Shoji Takada; Yuji Sugita
        PLOS Computational Biology, 05 Apr. 2022, Peer-reviewed
      • Inferring Conformational State of Myosin Motor in an Atomic Force Microscopy Image via Flexible Fitting Molecular Simulations
        Sotaro Fuchigami; Shoji Takada
        Frontiers in Molecular Biosciences, 29 Apr. 2022, Peer-reviewed
      • Rotational Mechanism of FO Motor in the F-Type ATP Synthase Driven by the Proton Motive Force
        Shintaroh Kubo; Shoji Takada
        Frontiers in Microbiology, 16 Jun. 2022
      • End-to-end differentiable blind tip reconstruction for noisy atomic force microscopy images.
        Yasuhiro Matsunaga; Sotaro Fuchigami; Tomonori Ogane; Shoji Takada
        Scientific reports, 04 Jan. 2023
      • 3P118 Coarse-grained simulation of chromatosome : H1-mediated dynamic compaction of nucleosome structure(04. Nucleic acid binding proteins,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))
        Shirai Nobu C.; Takada Shoji
        Seibutsu Butsuri, 2014
      • 2P051 Quantifying how actin filament is stretched, twisted and bent : A coarse grained molecular dynamics simulation study(01C. Protein: Property,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))
        Matsushita Shinji; Takada Shoji
        Seibutsu Butsuri, 2014
      • 3P276 Comprehensive analysis of protein folding energy landscape by multicanonical Go-model molecular dynamics simulation(24. Mathematical biology,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))
        Ito Mashiho; Takada Shoji
        Seibutsu Butsuri, 2014
      • 2P120 Structural dynamics of tri-nucleosome studied by combination of coarse grained molecular simulation and SAXS(05A. Nucleic acid: Structure & Property,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))
        Takagi Yusuke; Kokabu Yuichi; Oda Takashi; Tachiwana Hiroaki; Kenzaki Hiroo; Kurumizaka Hitoshi; Sato Mamoru; Ikeguchi Mitsunori; Takada Shoji
        Seibutsu Butsuri, 2014
      • 1P148 Molecular mechanism of the epsilon subunit from F-type ATP synthases studied by Molecular Dynamics simulations(11. Molecular motor,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))
        Krah Alexander; Takada Shoji
        Seibutsu Butsuri, 2014
      • 2P056 Domain swapping of myoglobin dimer studied by coarsegrained molecular dynamics simulations(01C. Protein: Property)
        Ono Koji; Takada Shoji
        Seibutsu Butsuri, 2013
      • 2P049 Folding coupled with binding and allosteric motions in calmodulin domains(01B. Protein: Structure & Function,Poster)
        LI Wenfei; WANG Wei; Takada Shoji
        Seibutsu Butsuri, 2013
      • 3P120 DNA unwinding mechanisms in E. coli, oriC region studied by coarse grained molecular dynamics simulations(05A. Nucleic acid: Structure & Property,Poster)
        Shimizu Masahiro; Takada Shoji
        Seibutsu Butsuri, 2013
      • 3P104 Coarse grained molecular dynamics simulations toward the mechanism elucidation of membrane protein topogenesis(03. Membrane proteins,Poster)
        Sakuma Kouya; Takada Shoji
        Seibutsu Butsuri, 2013
      • Round-Table Discussion on "Future of Biophysics"
        Ishimori Koichiro; Ito Etsuro; Takada Shoji; Terakita Akihisa; Harada Yoshie; Mochizuki Atsushi; Yasuda Kenji; Wakatsuki Soichi; Kandori Hideki; Kidera Akinori
        Seibutsu Butsuri, 25 Mar. 2012
      • 2E1558 Protein specific partial charges by Ab-initio fragment molecular orbital method for more accurate protein simulations(Proteins:Property II,Oral Presentation,The 50th Annual Meeting of the Biophysical Society of Japan)
        Chang Le; Takada Shoji
        Seibutsu Butsuri, 2012
      • 1P190 1B1435 Structural basis for the coordinated processive movement of kinesin-1 studied by structural and single molecule analyses(Molecular motor,Oral Presentations,The 48th Annual Meeting of the Biophysical Society of Japan)
        Makino Tsukasa; Kanada Ryo; Mori Teppei; Miyazono Ken-ichi; Tanokura Masaru; Takada Shoji; Tomishige Michio
        Seibutsu Butsuri, 2010
      • Physico-chemical approach to protein structure prediction by coarse-grained model
        Fujitsuka Y.; Fukunishi H.; Takada S.
        Seibutsu Butsuri, 2001
      • Towerd protein structure prediction : Hydrophobicity replica exchange method
        Fukunishi H; Watanabe O; Takada S
        Seibutsu Butsuri, 2001
      • Structure formation of proteins and "Molecular crowding" : Molecular dynamics simulation
        TAKAGI Fumiko; TAKADA Syoji
        Seibutsu Butsuri, 2001
      • de novo design of proteins-3 helix bundle : (I)sequence design by energy landscape theory
        Jin W.; Kambara O.; Tamura A.; Takada S.
        Seibutsu Butsuri, 2001
      • Key residue on cytoplasmic dynein for asymmetric unbinding and unidirectional movement along microtubule
        Shintaroh Kubo; Tomohiro Shima; Takahide Kon; Shoji Takada
        27 Mar. 2022
      • F0-F1 coupling and symmetry mismatch in ATP synthase resolved in every F0 rotation step
        Shintaroh Kubo; Toru Niina; Shoji Takada
        14 Nov. 2021
      • Testing mechanisms of DNA sliding by architectural DNA-binding proteins: dynamics of single wild-type and mutant protein molecules in vitro and in vivo.
        Kiyoto Kamagata; Yuji Itoh; Cheng Tan; Eriko Mano; Yining Wu; Sridhar Mandali; Shoji Takada; Reid C Johnson
        Nucleic acids research, 07 Sep. 2021
      • The lane-switch mechanism for nucleosome repositioning by DNA translocase.
        Fritz Nagae; Giovanni B Brandani; Shoji Takada; Tsuyoshi Terakawa
        Nucleic acids research, 07 Aug. 2021
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      • Rigid-body fitting to atomic force microscopy images for inferring probe shape and biomolecular structure
        Toru Niina; Yasuhiro Matsunaga; Shoji Takada
        PLoS Computational Biology, Jul. 2021
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      • The kinetic landscape of nucleosome assembly: A coarse-grained molecular dynamics study
        Giovanni B. Brandani; Cheng Tan; Shoji Takada
        PLoS Computational Biology, Jul. 2021
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      • Modeling of DNA binding to the condensin hinge domain using molecular dynamics simulations guided by atomic force microscopy
        Hiroki Koide; Noriyuki Kodera; Shveta Bisht; Shoji Takada; Tsuyoshi Terakawa
        PLoS Computational Biology, Jul. 2021
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      • Role of bacterial RNA polymerase gate opening dynamics in DNA loading and antibiotics inhibition elucidated by quasi-Markov State Model.
        Ilona Christy Unarta; Siqin Cao; Shintaroh Kubo; Wei Wang; Peter Pak-Hang Cheung; Xin Gao; Shoji Takada; Xuhui Huang
        Proceedings of the National Academy of Sciences of the United States of America, 27 Apr. 2021
      • Opening of cohesin's SMC ring is essential for timely DNA replication and DNA loop formation.
        Ryota Sakata; Kyoma Niwa; Diego Ugarte La Torre; Chenyang Gu; Eri Tahara; Shoji Takada; Tomoko Nishiyama
        Cell reports, 27 Apr. 2021
      • Cooperation among c-subunits of FoF1-ATP synthase in rotation-coupled proton translocation
        Noriyo Mitome; Shintaroh Kubo; Sumie Ohta; Hikaru Takashima; Yuto Shigefuji; Toru Niina; Shoji Takada
        25 Mar. 2021
      • Linker DNA Length is a Key to Tri-nucleosome Folding.
        Hiroo Kenzaki; Shoji Takada
        Journal of molecular biology, 19 Mar. 2021
      • Semi-Implicit Time Integration with Hessian Eigenvalue Corrections for a Larger Time Step in Molecular Dynamics Simulations
        Takumi Washio; Ryo Kanada; Xiaoke Cui; Jun Ichi Okada; Seiryo Sugiura; Shoji Takada; Toshiaki Hisada
        Journal of Chemical Theory and Computation, 2021
      • Case Report: Bayesian Statistical Inference of Experimental Parameters via Biomolecular Simulations: Atomic Force Microscopy.
        Sotaro Fuchigami; Toru Niina; Shoji Takada
        Frontiers in molecular biosciences, 2021
      • Coarse-grained implicit solvent lipid force field with a compatible resolution to the Cα protein representation.
        Diego Ugarte La Torre; Shoji Takada
        The Journal of chemical physics, 28 Nov. 2020
      • The HMGB chromatin protein Nhp6A can bypass obstacles when traveling on DNA.
        Kiyoto Kamagata; Kana Ouchi; Cheng Tan; Eriko Mano; Sridhar Mandali; Yining Wu; Shoji Takada; Satoshi Takahashi; Reid C Johnson
        Nucleic acids research, 04 Nov. 2020
      • Resolving the data asynchronicity in high-speed atomic force microscopy measurement via the Kalman Smoother.
        Shintaroh Kubo; Suguru Kato; Kazuyuki Nakamura; Noriyuki Kodera; Shoji Takada
        Scientific reports, 27 Oct. 2020
      • Particle Filter Method to Integrate High-Speed Atomic Force Microscopy Measurements with Biomolecular Simulations.
        Sotaro Fuchigami; Toru Niina; Shoji Takada
        Journal of chemical theory and computation, 13 Oct. 2020
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      • Nucleosome allostery in pioneer transcription factor binding.
        Cheng Tan; Shoji Takada
        Proceedings of the National Academy of Sciences of the United States of America, 25 Aug. 2020
      • Nucleosomes as allosteric scaffolds for genetic regulation.
        Shoji Takada; Giovanni B Brandani; Cheng Tan
        Current opinion in structural biology, Jun. 2020, Peer-reviewed
      • Molecular dynamics simulation of proton-transfer coupled rotations in ATP synthase FO motor.
        Shintaroh Kubo; Toru Niina; Shoji Takada
        Scientific reports, 19 May 2020, Peer-reviewed
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      • How Cytoplasmic Dynein Couples ATP Hydrolysis Cycle to Diverse Stepping Motions: Kinetic Modeling.
        Shintaroh Kubo; Tomohiro Shima; Shoji Takada
        Biophysical journal, 21 Apr. 2020, Peer-reviewed
      • Flexible Fitting of Biomolecular Structures to Atomic Force Microscopy Images via Biased Molecular Simulations.
        Toru Niina; Sotaro Fuchigami; Shoji Takada
        Journal of chemical theory and computation, 11 Feb. 2020, Peer-reviewed
      • Nucleosome Crowding in Chromatin Slows the Diffusion but Can Promote Target Search of Proteins.
        Ryo Kanada; Tsuyoshi Terakawa; Hiroo Kenzaki; Shoji Takada
        Biophysical journal, 18 Jun. 2019, Peer-reviewed
      • Overcoming the Bottleneck of the Enzymatic Cycle by Steric Frustration.
        Wenfei Li; Jun Wang; Jian Zhang; Shoji Takada; Wei Wang
        Physical review letters, 14 Jun. 2019, Peer-reviewed
      • Gō model revisited.
        Shoji Takada
        Biophysics and physicobiology, 2019, Peer-reviewed
      • Chromatin remodelers couple inchworm motion with twist-defect formation to slide nucleosomal DNA.
        Giovanni B Brandani; Shoji Takada
        PLoS computational biology, Nov. 2018, Peer-reviewed
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      • Dynamic and Structural Modeling of the Specificity in Protein-DNA Interactions Guided by Binding Assay and Structure Data.
        Cheng Tan; Shoji Takada
        Journal of chemical theory and computation, 10 Jul. 2018, Peer-reviewed
      • Interactions of HP1 Bound to H3K9me3 Dinucleosome by Molecular Simulations and Biochemical Assays.
        Shuhei Watanabe; Yuichi Mishima; Masahiro Shimizu; Isao Suetake; Shoji Takada
        Biophysical journal, 22 May 2018, Peer-reviewed
      • DNA sliding in nucleosomes via twist defect propagation revealed by molecular simulations.
        Giovanni B Brandani; Toru Niina; Cheng Tan; Shoji Takada
        Nucleic acids research, 06 Apr. 2018, Peer-reviewed
      • Reconstruction of Atomistic Structures from Coarse-Grained Models for Protein-DNA Complexes.
        Masahiro Shimizu; Shoji Takada
        Journal of chemical theory and computation, 13 Mar. 2018, Peer-reviewed
      • Sequence-dependent nucleosome sliding in rotation-coupled and uncoupled modes revealed by molecular simulations.
        Toru Niina; Giovanni B Brandani; Cheng Tan; Shoji Takada
        PLoS computational biology, Dec. 2017, Peer-reviewed
      • Allosteric conformational change cascade in cytoplasmic dynein revealed by structure-based molecular simulations.
        Shintaroh Kubo; Wenfei Li; Shoji Takada
        PLoS computational biology, Sep. 2017, Peer-reviewed
      • How one-dimensional diffusion of transcription factors are affected by obstacles: coarse-grained molecular dynamics study
        Mami Saito; Tsuyoshi Terakawa; Shoji Takada
        MOLECULAR SIMULATION, 2017, Peer-reviewed
      • The structural basis of a high affinity ATP binding ε subunit from a bacterial ATP synthase.
        Alexander Krah; Yasuyuki Kato-Yamada; Shoji Takada
        PloS one, 2017, Peer-reviewed
      • Near-atomic structural model for bacterial DNA replication initiation complex and its functional insights.
        Masahiro Shimizu; Yasunori Noguchi; Yukari Sakiyama; Hironori Kawakami; Tsutomu Katayama; Shoji Takada
        Proceedings of the National Academy of Sciences of the United States of America, 13 Dec. 2016, Peer-reviewed
      • Histone acetylation dependent energy landscapes in tri-nucleosome revealed by residue-resolved molecular simulations.
        Le Chang; Shoji Takada
        Scientific reports, 04 Oct. 2016, Peer-reviewed
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      • Dynamic Coupling among Protein Binding, Sliding, and DNA Bending Revealed by Molecular Dynamics.
        Cheng Tan; Tsuyoshi Terakawa; Shoji Takada
        Journal of the American Chemical Society, 13 Jul. 2016, Peer-reviewed
      • On the ATP binding site of the epsilon subunit from bacterial F-type ATP synthases
        Alexander Krah; Shoji Takada
        BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS, Apr. 2016, Peer-reviewed
      • On the ATP binding site of the ε subunit from bacterial F-type ATP synthases.
        Alexander Krah; Shoji Takada
        Biochimica et biophysica acta, Apr. 2016, Peer-reviewed
      • Modeling Structural Dynamics of Biomolecular Complexes by Coarse-Grained Molecular Simulations
        Shoji Takada; Ryo Kanada; Cheng Tan; Tsuyoshi Terakawa; Wenfei Li; Hiroo Kenzaki
        ACCOUNTS OF CHEMICAL RESEARCH, Dec. 2015, Peer-reviewed
      • p53 dynamics upon response element recognition explored by molecular simulations
        Tsuyoshi Terakawa; Shoji Takada
        SCIENTIFIC REPORTS, Nov. 2015, Peer-reviewed
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      • On the Mg2+ binding site of the epsilon subunit from bacterial F-type ATP synthases
        Alexander Krah; Shoji Takada
        BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS, Oct. 2015, Peer-reviewed
      • Partial Unwrapping and Histone Tail Dynamics in Nucleosome Revealed by Coarse-Grained Molecular Simulations
        Hiroo Kenzaki; Shoji Takada
        PLOS COMPUTATIONAL BIOLOGY, Aug. 2015, Peer-reviewed
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      • How Co-translational Folding of Multidomain Protein Is Affected by Elongation Schedule: Molecular Simulations
        Tomohiro Tanaka; Naoto Hori; Shoji Takada
        PLOS COMPUTATIONAL BIOLOGY, Jul. 2015, Peer-reviewed
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      • Couplings between hierarchical conformational dynamics from multi-time correlation functions and two-dimensional lifetime spectra: Application to adenylate kinase
        Junichi Ono; Shoji Takada; Shinji Saito
        JOURNAL OF CHEMICAL PHYSICS, Jun. 2015, Peer-reviewed
      • Dimer domain swapping versus monomer folding in apo-myoglobin studied by molecular simulations
        Koji Ono; Mashiho Ito; Shun Hirota; Shoji Takada
        PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2015, Peer-reviewed
      • Multi-scale Ensemble Modeling of Modular Proteins with Intrinsically Disordered Linker Regions: Application to p53
        Tsuyoshi Terakawa; Junichi Higo; Shoji Takada
        BIOPHYSICAL JOURNAL, Aug. 2014, Peer-reviewed
      • Energy landscape views for interplays among folding, binding, and allostery of calmodulin domains
        Wenfei Li; Wei Wang; Shoji Takada
        PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, Jul. 2014, Peer-reviewed
      • RESPAC: Method to Determine Partial Charges in Coarse-Grained Protein Model and Its Application to DNA-Binding Proteins
        Tsuyoshi Terakawa; Shoji Takada
        JOURNAL OF CHEMICAL THEORY AND COMPUTATION, Feb. 2014, Peer-reviewed
      • 2SEA-04 Drug uptake pathways in multi-drug transporter studied by coarse-grained simulations(2SEA Which is important for biophysicists, pump or channel?,Symposium,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))
        Takada Shoji
        Seibutsu Butsuri, 2014
      • 2P124 Structural sampling of polynucleosome by coarse-grained simulations(05B. Nucleic acid: Interaction & Complex formation,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))
        Kenzaki Hiroo; Takada Shoji
        Seibutsu Butsuri, 2014
      • 1P119 How transcription factor can bypass obstacles? : Molecular simulation approaches(04. Nucleic acid binding proteins,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))
        Saito Mami; Terakawa Tsuyoshi; Takada Shoji
        Seibutsu Butsuri, 2014
      • 3P022 Coarse-grained Generalized Born and surface area models and its application to protein docking(01B. Protein: Structure & Function,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))
        Chang Le; Li Wenfei; Hori Naoto; Takada Shoji
        Seibutsu Butsuri, 2014
      • 3P028 Interactions of MEK1 with ERK2 in mammalian MAPK pathway studied by coarse-grained molecular simulations(01B. Protein: Structure & Function,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))
        Kanada Ryo; Takada Shoji
        Seibutsu Butsuri, 2014
      • Folding Coupled with Assembly in Split Green Fluorescent Proteins Studied by Structure-based Molecular Simulations
        Mashiho Ito; Takeaki Ozawa; Shoji Takada
        JOURNAL OF PHYSICAL CHEMISTRY B, Oct. 2013, Peer-reviewed
      • Bayesian Parameter Inference by Markov Chain Monte Carlo with Hybrid Fitness Measures: Theory and Test in Apoptosis Signal Transduction Network
        Yohei Murakami; Shoji Takada
        PLOS ONE, Sep. 2013, Peer-reviewed
      • Adenosine Triphosphate Hydrolysis Mechanism in Kinesin Studied by Combined Quantum-Mechanical/Molecular-Mechanical Metadynamics Simulations
        Matthew J. McGrath; I. -F. Will Kuo; Shigehiko Hayashi; Shoji Takada
        JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, Jun. 2013, Peer-reviewed
      • Drug Uptake Pathways of Multidrug Transporter AcrB Studied by Molecular Simulations and Site-Directed Mutagenesis Experiments
        Xin-Qiu Yao; Nobuhiro Kimura; Satoshi Murakami; Shoji Takada
        JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, May 2013, Peer-reviewed
      • Protein-specific force field derived from the fragment molecular orbital method can improve protein-ligand binding interactions
        Le Chang; Takeshi Ishikawa; Kazuo Kuwata; Shoji Takada
        JOURNAL OF COMPUTATIONAL CHEMISTRY, May 2013, Peer-reviewed
      • Structure-based Molecular Simulations Reveal the Enhancement of Biased Brownian Motions in Single-headed Kinesin
        Ryo Kanada; Takeshi Kuwata; Hiroo Kenzaki; Shoji Takada
        PLoS Computational Biology, Feb. 2013, Peer-reviewed
      • 2P058 Analysis of co-translational folding of SUFI by coarse grained MD simulation(01C. Protein: Property)
        Tanaka Tomohiro; Hori Naoto; Takada Shoji
        Seibutsu Butsuri, 2013
      • 2P048 Molecular simulation study on signaling control in yeast MAPK pathway(01B. Protein: Structure & Function,Poster)
        Hori Naoto; Takada Shoji
        Seibutsu Butsuri, 2013
      • 2P047 Docking dynamics of MAP kinase : MEK1-ERK2 complex system studied by coarse-grained simulation(01B. Protein: Structure & Function,Poster)
        Kanada Ryo; Takada Shoji
        Seibutsu Butsuri, 2013
      • 3P118 Specific DNA sequence search and recognition mechanism of transcription factor p53 : multi-scale simulation study(04. Nucleic acid binding proteins,Poster)
        Terakawa Tsuyoshi; Higo Junichi; Takada Shoji
        Seibutsu Butsuri, 2013
      • 3P121 Poly-nucleosome structural dynamics by coarse-grained simulations(05A. Nucleic acid: Structure & Property,Poster)
        Kenzaki Hiroo; Takada Shoji
        Seibutsu Butsuri, 2013
      • 3P116 The coarse grained GBSA method for simulations of biomolecular system(04. Nucleic acid binding proteins,Poster)
        Chang Le; Li Wenfei; Hori Naoto; Takada Shoji
        Seibutsu Butsuri, 2013
      • 3P117 How DNA-binding proteins can bypass obstacles? Molecular simulation approaches(04. Nucleic acid binding proteins,Poster)
        Saito Mami; Terakawa Tsuyoshi; Takada Shoji
        Seibutsu Butsuri, 2013
      • 2SCP-03 Structure of model chromatin and dynamics of transcription factors studied by coarse-grained simulations(2SCP Functional dynamics of Nucleosome and Chromathin in Nuclear Crowding Environment,Symposium,The 51th Annual Meeting of the Biophysical Society of Japan)
        Takada Shoji
        Seibutsu Butsuri, 2013
      • Energy landscape and multiroute folding of topologically complex proteins adenylate kinase and 2ouf-knot
        Wenfei Li; Tsuyoshi Terakawa; Wei Wang; Shoji Takada
        PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, Oct. 2012, Peer-reviewed
      • Coarse-Grained Structure-Based Model for RNA-Protein Complexes Developed by Fluctuation Matching
        Naoto Hori; Shoji Takada
        JOURNAL OF CHEMICAL THEORY AND COMPUTATION, Sep. 2012, Peer-reviewed
      • p53 Searches on DNA by Rotation-Uncoupled Sliding at C-Terminal Tails and Restricted Hopping of Core Domains
        Tsuyoshi Terakawa; Hiroo Kenzaki; Shoji Takada
        JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, Sep. 2012, Peer-reviewed
      • Coarse-grained molecular simulations of large biomolecules
        Shoji Takada
        CURRENT OPINION IN STRUCTURAL BIOLOGY, Apr. 2012, Peer-reviewed
      • 1PT178 Folding of topologically complex proteins by an atomic interaction based coarse grained model(The 50th Annual Meeting of the Biophysical Society of Japan)
        Li Wenfei; Terakawa Tsuyoshi; Wang Wei; Takada Shoji
        Seibutsu Butsuri, 2012
      • 1PT172 Stability and dynamics of satellite tobacco mosaic viruses studied by coarse-grained simulations(The 50th Annual Meeting of the Biophysical Society of Japan)
        Ono Koji; Hori Naoto; Takada Shoji
        Seibutsu Butsuri, 2012
      • 1SE-05 Folding and conformational dynamics of multi-domain proteins(1SE Conformational dynamics: Folding to function,Symposium,The 50th Annual Meeting of the Biophysical Society of Japan)
        Takada Shoji
        Seibutsu Butsuri, 2012
      • 3PT009 Mono- and poly-nucleosome structural dynamics by coarse-grained simulations(The 50th Annual Meeting of the Biophysical Society of Japan)
        Kenzaki Hiroo; Takada Shoji
        Seibutsu Butsuri, 2012
      • 3PT011 Diffusion of TFIIIA zinc fingers along DNA studied by molecular simulations(The 50th Annual Meeting of the Biophysical Society of Japan)
        Miyoshi Yohei; Terakawa Tsuyoshi; Takada Shoji
        Seibutsu Butsuri, 2012
      • 3PT006 Transcription factor p53 searching dynamics on nucleosomal DNA: Coarse-grained molecular dynamics simulation study(The 50th Annual Meeting of the Biophysical Society of Japan)
        Terakawa Tsuyoshi; Takada Shoji
        Seibutsu Butsuri, 2012
      • 3PT007 Movement of T4 sliding clamp on DNA studied by coarse-grained molecular simulations(The 50th Annual Meeting of the Biophysical Society of Japan)
        Narihara Itaru; Terakawa Tsuyoshi; Kenzaki Hiroo; Takada Shoji
        Seibutsu Butsuri, 2012
      • 3C0948 Dynamical motions of tRNA and ribosome complex during translation elongation studied by coarse-grained molecular simulations(Nucleic Acids,Oral Presentation,The 50th Annual Meeting of the Biophysical Society of Japan)
        Hori Naoto; Takada Shoji
        Seibutsu Butsuri, 2012
      • Rigor of cell fate decision by variable p53 pulses and roles of cooperative gene expression by p53
        Yohei Murakami; Shoji Takada
        Biophysics, 2012, Peer-reviewed
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      • Multiscale Ensemble Modeling of Intrinsically Disordered Proteins: p53 N-Terminal Domain
        Tsuyoshi Terakawa; Shoji Takada
        BIOPHYSICAL JOURNAL, Sep. 2011, Peer-reviewed
      • CafeMol: A Coarse-Grained Biomolecular Simulator for Simulating Proteins at Work
        Hiroo Kenzaki; Nobuyasu Koga; Naoto Hori; Ryo Kanada; Wenfei Li; Kei-ichi Okazaki; Xin-Qiu Yao; Shoji Takada
        JOURNAL OF CHEMICAL THEORY AND COMPUTATION, Jun. 2011, Peer-reviewed
      • On Easy Implementation of a Variant of the Replica Exchange with Solute Tempering in GROMACS
        Tsuyoshi Terakawa; Tomoshi Kameda; Shoji Takada
        JOURNAL OF COMPUTATIONAL CHEMISTRY, May 2011, Peer-reviewed
      • Structural Comparison of F-1-ATPase: Interplay among Enzyme Structures, Catalysis, and Rotations
        Kei-ichi Okazaki; Shoji Takada
        STRUCTURE, Apr. 2011, Peer-reviewed
      • Frustration, specific sequence dependence, and nonlinearity in large-amplitude fluctuations of allosteric proteins
        Wenfei Li; Peter G. Wolynes; Shoji Takada
        PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, Mar. 2011, Peer-reviewed
      • 1L1624 Coarse-grained molecular simulation study of ribosomal translocation dynamics(Molecular motor 1,The 49th Annual Meeting of the Biophysical Society of Japan)
        Hori Naoto; Takada Shoji
        Seibutsu Butsuri, 2011
      • 1M1348 The interface structure between kinesin and microtubule refined by all-atom MD simulations(Molecular motor 2,The 49th Annual Meeting of the Biophysical Society of Japan)
        Kanada Ryo; Makino Tsukasa; Tomishige Michio; Takada Shoji
        Seibutsu Butsuri, 2011
      • Drug export and allosteric coupling in a multidrug transporter revealed by molecular simulations
        Xin-Qiu Yao; Hiroo Kenzaki; Satoshi Murakami; Shoji Takada
        NATURE COMMUNICATIONS, Nov. 2010, Peer-reviewed
      • Characterizing Protein Energy Landscape by Self-Learning Multiscale Simulations: Application to a Designed beta-Hairpin
        Wenfei Li; Shoji Takada
        BIOPHYSICAL JOURNAL, Nov. 2010, Peer-reviewed
      • Multiscale methods for protein folding simulations
        Wenfei Li; Hiroaki Yoshii; Naoto Hori; Tomoshi Kameda; Shoji Takada
        METHODS, Sep. 2010, Peer-reviewed
      • 35 Years of the Go Model
        TAKADA Shoji
        Seibutsu Butsuri, 25 Jul. 2010
      • 1P056 Molecular Dynamics Simulation Study of p53 Intrinsically Disordered N Terminal Domain(Protein:Property,The 48th Annual Meeting of the Biophysical Society of Japan)
        Terakawa Tsuyoshi; Takada Shoji
        Seibutsu Butsuri, 2010
      • 3P163 Structural comparison of F_1-ATPase : Coupling among enzyme structures, reaction sites, and rotations(Molecular motor,The 48th Annual Meeting of the Biophysical Society of Japan)
        Okazaki Kei-ichi; Takada Shoji
        Seibutsu Butsuri, 2010
      • 1P137 Coarse-grained model of RNA-protein complexes based on all-atom simulations(Nucleic acid:Interaction & Complex formation,The 48th Annual Meeting of the Biophysical Society of Japan)
        Hori Naoto; Li Wenfei; Takada Shoji
        Seibutsu Butsuri, 2010
      • Paddling mechanism for the substrate translocation by AAA plus motor revealed by multiscale molecular simulations
        Nobuyasu Koga; Tomoshi Kameda; Kei-ichi Okazaki; Shoji Takada
        PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, Oct. 2009, Peer-reviewed
      • Self-learning multiscale simulation for achieving high accuracy and high efficiency simultaneously
        Wenfei Li; Shoji Takada
        JOURNAL OF CHEMICAL PHYSICS, Jun. 2009, Peer-reviewed
      • Bimodal protein solubility distribution revealed by an aggregation analysis of the entire ensemble of Escherichia coli proteins
        Tatsuya Niwa; Bei-Wen Ying; Katsuyo Saito; WenZhen Jin; Shoji Takada; Takuya Ueda; Hideki Taguchi
        PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, Mar. 2009, Peer-reviewed
      • Folding energy landscape and network dynamics of small globular proteins
        Naoto Hori; George Chikenji; R. Stephen Berry; Shoji Takada
        PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, Jan. 2009, Peer-reviewed
      • 2SP5-04 Large-amplitude fluctuation and function of proteins studied by molecular simulations(2SP5 How are biological molecules fluctuating?,The 47th Annual Meeting of the Biophysical Society of Japan)
        Takada Shoji
        Seibutsu Butsuri, 2009
      • 1TA4-02 Mechanism of unidirectional move of KIF1A motor studied by coarse-grained simulations(The 47th Annual Meeting of the Biophysical Society of Japan)
        Kanada Ryo; Okazaki Kei-ichi; Kenzaki Hiroo; Takada Shoji
        Seibutsu Butsuri, 2009
      • 1P-098 Replica exchange simulations applied for coarse-grained models of giant protein-nucleic acid complex(Nucleic acid:Interaction & Complex formation, The 47th Annual Meeting of the Biophysical Society of Japan)
        Hori Naoto; Kenzaki Hiroo; Takada Shoji
        Seibutsu Butsuri, 2009
      • Dynamic energy landscape view of coupled binding and protein conformational change: Induced-fit versus population-shift mechanisms
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        PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, Aug. 2008, Peer-reviewed
      • In silico chaperonin-like cycle helps folding of proteins for structure prediction
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        BIOPHYSICAL JOURNAL, Apr. 2008, Peer-reviewed
      • Asymmetry in membrane protein sequence and structure: Glycine outside rule
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        JOURNAL OF MOLECULAR BIOLOGY, Mar. 2008, Peer-reviewed
      • 2P-199 Mechanical principle of the motor protein KIF1A studied by molecular dynamics simulation (2)(The 46th Annual Meeting of the Biophysical Society of Japan)
        Kuwata Takeshi; Okazaki Kei-ichi; Kanada Ryo; Kenzaki Hiroo; Takada Shoji
        Seibutsu Butsuri, 2008
      • 2P-159 Coarse-grained simulation for understanding working mechanism of F_1-ATPase(The 46th Annual Meeting of the Biophysical Society of Japan)
        Okazaki Kei-ichi; Takada Shoji
        Seibutsu Butsuri, 2008
      • 1P-145 Simulation study on stepping mechanism of Conventional Kinesin by coarse-grained model(The 46th Annual Meeting of the Biophysical Society of Japan)
        Kanada Ryo; Okazaki Kei-ichi; Takada Shoji
        Seibutsu Butsuri, 2008
      • 2S4-4 Structure change coupled with binding and its application to biomolecular systems(2S4 What protein tertiary structure tells us,The 46th Annual Meeting of the Biophysical Society of Japan)
        Okazaki Kei-ichi; Takada Shoji
        Seibutsu Butsuri, 2008
      • 1P-065 Simulating large-scale conformational change in a virus protein that mediates membrane fusion(The 46th Annual Meeting of the Biophysical Society of Japan)
        FUjiwara Shinji; Okazaki Keiichi; Takada Shoji
        Seibutsu Butsuri, 2008
      • S09A4 Rotary mechanisms of F1-ATPase revealed by molecular simulations(Mechanism of F_1-ATPase Molecular Motor-A Cross Talk among Single Molecule, Structural Biology, and Molecular Simulation Studies-)
        Koga Nobuyasu; Takada Shoji
        Seibutsu Butsuri, 2007
      • 2P145 Mechanical principle of the motor protein KIF1A studied by molecular dynamics simulation(Molecular motors,Poster Presentations)
        Kuwata Takeshi; Okazaki Kei-ichi; Tatsumi Rie; Koga Nobuyasu; Takada Shoji
        Seibutsu Butsuri, 2007
      • 3P279 Can new-folds emerge by protein module shuffling? : Computer experiment(Proteins- protein engineering, and evolutionary engineering,Poster Presentations)
        Yoshii Hiroaki; Park Sung-Joon; Jin Wenzhen; Takada Shoji
        Seibutsu Butsuri, 2007
      • 2P107 Network and energy landscape of a folding protein revealed by multicanonical fragment assembly simulations(Proteins-stability, folding, and other physicochemical properties,Oral Presentations)
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        Seibutsu Butsuri, 2007
      • 3P074 Coupled protein conformational change and ligand-binding affinity revealed by coarse-grained simulations : application to molecular motors(Proteins-stability, folding, and other physicochemical properties,Oral Presentations)
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        Seibutsu Butsuri, 2007
      • What we can learn about protein folding from recent progress in structure prediction
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        FRONTIERS OF COMPUTATIONAL SCIENCE, 2007, Peer-reviewed
      • Secondary structure provides a template for the folding of nearby polypeptides
        Tomoshi Kameda; Shoji Takada
        PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, Nov. 2006, Peer-reviewed
      • Multiple-basin energy landscapes for large-amplitude conformational motions of proteins: Structure-based molecular dynamics simulations
        Kei-ichi Okazaki; Nobuyasu Koga; Shoji Takada; Jose N. Onuchic; Peter G. Wolynes
        PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, Aug. 2006, Peer-reviewed
      • Protein grabs a ligand by extending anchor residues: Molecular simulation for Ca2+ binding to calmodulin loop
        C Kobayashi; S Takada
        BIOPHYSICAL JOURNAL, May 2006, Peer-reviewed
      • Folding-based molecular simulations reveal mechanisms of the rotary motor F-1-ATPase
        N Koga; S Takada
        PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, Apr. 2006, Peer-reviewed
      • Shaping up the protein folding funnel by local interaction: Lesson from a structure prediction study
        G Chikenji; Y Fujitsuka; S Takada
        PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, Feb. 2006, Peer-reviewed
      • SimFold energy function for de novo protein structure prediction: Consensus with Rosetta
        Y Fujitsuka; G Chikenji; S Takada
        PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, Feb. 2006, Peer-reviewed
      • 1P589 Coupling between protein conformational change and ligand binding reaction studied by multiple-basin energy landscape model(27. Molecular dynamics simulation,Poster Session,Abstract,Meeting Program of EABS & BSJ 2006)
        Okazaki Kei-ichi; Takada Shoji
        Seibutsu Butsuri, 2006
      • 2P099 Energy landscape of folding proteins revealed by large-scale multicanonical fragment assembly simulations(31. Protein folding and misfolding (II),Poster Session,Abstract,Meeting Program of EABS & BSJ 2006)
        Hori Naoto; Chikenji George; Takada Shoji
        Seibutsu Butsuri, 2006
      • A computing system for protein structure prediction with trial-and-error process
        Hiroshi Arikawa; Shingo Masuda; Tadaomi Furuta; Wenzhen Jin; Sung-Joon Park; Shoji Takada; Kazutoshi Fujikawa; Hideki Sunahara
        IPSJ Transactions on Advanced Computing Systems, Aug. 2005, Peer-reviewed
      • CASP6 Meeting Report : Japanese Predictors Achieved Good Scores
        CHIKENJI George; TAKADA Shoji; MOTONO Chie; TOMII Kentaro
        Biophysics, 25 May 2005
      • 3P171 Approach to the mechanical principle of myosin motors using coarse-grained models
        Tatsumi R.; Koga N.; Takada S.
        Seibutsu Butsuri, 2005
      • 2P173 Molecular mechanisms of the rotary motor F1-ATPase : molecular dynamics simulation
        Koga N.; Okazaki K.; Takeuchi S.; Takada S.
        Seibutsu Butsuri, 2005
      • 3P002 Structure Prediction of Membrane Proteins by the Fragment Assembly Method
        Jin W.; Miki T.; Takada S.
        Seibutsu Butsuri, 2005
      • 3P004 Towards highresolution protein modeling : Fragment assembly method with an allatom energy function
        Ito H.; Fujitsuka Y.; Chikenji G.; Takada S.
        Seibutsu Butsuri, 2005
      • 1P108 Understanding the Mechanism of ATP-dependent protein unfolding and translocation by the Molecular Dynamics Simulation
        Takeuchi S.; Takada S.; Koga N.; Kobayashi C.
        Seibutsu Butsuri, 2005
      • 1P062 Understanding protein conformational change by using Multiple GO Model
        Okazaki K.; Koga N.; Takada S.
        Seibutsu Butsuri, 2005
      • 1P099 Protein grabs a ligand by extending anchor residues : Molecular Simulation for Ca^<2+> binding to Calmodulin loop
        Kobayashi C.; Takada S.
        Seibutsu Butsuri, 2005
      • 1SD01 Multiple funnels for protein dynamical function
        Okazaki K.; Koga N.; Takada S.
        Seibutsu Butsuri, 2005
      • Applying a Grid Technology to Protein Structure Predictor "ROKKY"
        Kazutoshi Fujikawa; Wenzhen Jin; Sung-Joon Park; Tadaomi Furuta; Shoji Takada; Hiroshi Arikawa; Susumu Date; Shinji Shimojo
        FROM GRID TO HEALTHGRID, 2005, Peer-reviewed
      • Protein folding mechanisms and energy landscape of src SH3 domain studied by a structure prediction toolbox
        G Chikenji; Y Fujitsuka; S Takada
        CHEMICAL PHYSICS, Dec. 2004, Peer-reviewed
      • Guiding the search for a protein's maximum rate of folding
        YJ Zhu; XR Fu; T Wang; A Tamura; S Takada; JG Savan; F Gai
        CHEMICAL PHYSICS, Dec. 2004, Peer-reviewed
      • Roles of physical interactions in determining protein folding mechanisms: Molecular simulation of protein G and alpha spectrin SH3
        SY Lee; Y Fujitsuka; DH Kim; S Takada
        PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, Apr. 2004, Peer-reviewed
      • Optimizing physical energy functions for protein folding
        Y Fujitsuka; S Takada; ZA Luthey-Schulten; PG Wolynes
        PROTEINS-STRUCTURE FUNCTION AND GENETICS, Jan. 2004, Peer-reviewed
      • 3P118 Computational protein design system with allatom models
        Ito H.; Takada S.
        Seibutsu Butsuri, 2004
      • 2P042 A study of fragment selection for fragment assembly method predicting protein tertiary structures
        Park S.J.; Chikenji G.; Fujitsuka Y.; Takada S.
        Seibutsu Butsuri, 2004
      • 2P041 Extension of the method of Fragment Assenbly for membrane proteins
        Miki T.; Hujitsuka Y.; Takada S.
        Seibutsu Butsuri, 2004
      • 3P097 The role of locally stable structure of protein in forming structural topology:molecular dynamics simulation
        Koga N.; Chikenji G.; Takada S.
        Seibutsu Butsuri, 2004
      • 3P067 ROKKY : Protein Structure Prediction Server
        Jin W.; Furuta T.; Park S.J.; Koga N.; Takada S.
        Seibutsu Butsuri, 2004
      • 3P069 Understanding principles of protein structure from structure prediction
        Chikenji G.; Fujitsuka Y.; Park S.J.; Takada S.
        Seibutsu Butsuri, 2004
      • 3P095 Analysis of large scale protein conformational change using Multiple Go Model
        Okazaki K.; Koga N.; Takada S.
        Seibutsu Butsuri, 2004
      • 3P070 De novo protein structure prediction : Successes and failures in CASP6
        Fujitsuka Y.; Chikenji G.; Park S.J.; Takada S.
        Seibutsu Butsuri, 2004
      • 3P071 Study of a protein structure sampling method simulating molecular chaperone toward the de novo structure prediction
        Furuta T.; Takada S.
        Seibutsu Butsuri, 2004
      • 1P073 Calcium binding reaction in Calmodulin : Change in solvation of protein and calcium ions
        Kobayashi C.; Takada S.
        Seibutsu Butsuri, 2004
      • 1P074 ATP dependent protein unfolding and translocation by the molecular dynamics simulation
        Takeuchi S.; Koga N.; Takada S.
        Seibutsu Butsuri, 2004
      • 2SD05 Protein structure predictions for new fold targets in CASP6
        Chikenji G.; Fujitsuka Y.; Park S.J.; Takada S.
        Seibutsu Butsuri, 2004
      • Competition between protein folding and aggregation with molecular chaperones in crowded solutions: Insight from mesoscopic simulations
        AR Kinjo; S Takada
        BIOPHYSICAL JOURNAL, Dec. 2003, Peer-reviewed
      • A reversible fragment assembly method for de novo protein structure prediction
        G Chikenji; Y Fujitsuka; S Takada
        JOURNAL OF CHEMICAL PHYSICS, Oct. 2003, Peer-reviewed
      • How protein thermodynamics and folding mechanisms are altered by the chaperonin cage: Molecular simulations
        F Takagi; N Koga; S Takada
        PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, Sep. 2003, Peer-reviewed
      • De novo design of foldable proteins with smooth folding funnel: Automated negative design and experimental verification
        WZ Jin; O Kambara; H Sasakawa; A Tamura; S Takada
        STRUCTURE, May 2003, Peer-reviewed
      • Negative design of foldable proteins : new algorithm
        Jin W.; Fujitsuka Y.; Chikenji G.; Takada S.
        Seibutsu Butsuri, 2003
      • Molecular evolution simulation of zinc-binding proteins : Evolution of foldability induced by improvement of a function
        Fuchigami S.; Fujitsuka Y.; Chikenji G.; Takada S.
        Seibutsu Butsuri, 2003
      • Molecular mechanisms of the rotary motor protein F1-ATPase: Molecular dynamics simulation by applying folding model
        Koga N.; Takada S.
        Seibutsu Butsuri, 2003
      • Simulating 3D structure of Membrane Proteins
        Miki T.; Fujitsuka Y.; Takada S.
        Seibutsu Butsuri, 2003
      • The effect on protein-folding of encapsion and forced-unfolding by chaperonin cage : Molecular dynamics simulations
        Takagi F.; Takada S.
        Seibutsu Butsuri, 2003
      • Environment induced secondary structure of proteins : Molecular dynamics : Sampling by replica exchange method
        Kameda T.; Takada S.
        Seibutsu Butsuri, 2003
      • The fragment length and energy landscape in fragment assembly method
        Chikenji G.; Fujitsuka Y.; Takada S.
        Seibutsu Butsuri, 2003
      • De novo protein structure prediction : Optimization of potential function
        Fujitsuka Y.; Chikenji G.; Takada S.
        Seibutsu Butsuri, 2003
      • Effects of macromolecular crowding on protein folding and aggregation studied by density functional theory: Dynamics
        AR Kinjo; S Takada
        PHYSICAL REVIEW E, Nov. 2002, Peer-reviewed
      • Effects of macromolecular crowding on protein folding and aggregation studied by density functional theory: Statics
        AR Kinjo; S Takada
        PHYSICAL REVIEW E, Sep. 2002, Peer-reviewed
      • On the Hamiltonian replica exchange method for efficient sampling of biomolecular systems: Application to protein structure prediction
        H Fukunishi; O Watanabe; S Takada
        JOURNAL OF CHEMICAL PHYSICS, May 2002, Peer-reviewed
      • 1I1715 {\it In vivo \/} protein structure formation molecular dynamics simulation
        Takagi F.; Takada S.
        Seibutsu Butsuri, 2002
      • 1I1545 Roles of local structure in protein structure : Detabase analysis and structure prediction
        Takada S.; Fujitsuka Y.
        Seibutsu Butsuri, 2002
      • 1L1045 Theoretical analysis towards de novo design of beta proteins
        Jin W.; Fujitsuka Y.; Takada S.
        Seibutsu Butsuri, 2002
      • 1J1645 The reversible fragment assembly Monte Carlo method for ab initio-like protein structure prediction
        Chikenji G.; Fujitsuka Y.; Takada S.
        Seibutsu Butsuri, 2002
      • 1I1700 Theoretical model for in vivo protein supramolecular structures
        Kinjo A. R.; Takada S.
        Seibutsu Butsuri, 2002
      • 1I1515 De novo Protein Structure Prediction Based on All-Atom Force Field
        Fujitsuka Y.; Takada S.
        Seibutsu Butsuri, 2002
      • 2O1630 Molecular mechanisms of the rotary motor protein F1-ATPase : molecular dynamics simulation
        Koga N.; S. Shoji
        Seibutsu Butsuri, 2002
      • Roles of native topology and chain-length scaling in protein folding: A simulation study with a Go-like model
        N Koga; S Takada
        JOURNAL OF MOLECULAR BIOLOGY, Oct. 2001, Peer-reviewed
      • Microscopic theory of protein folding rates. II. Local reaction coordinates and chain dynamics
        JJ Portman; S Takada; PG Wolynes
        JOURNAL OF CHEMICAL PHYSICS, Mar. 2001, Peer-reviewed
      • Microscopic theory of protein folding rates. I. Fine structure of the free energy profile and folding routes from a variational approach
        JJ Portman; S Takada; PG Wolynes
        JOURNAL OF CHEMICAL PHYSICS, Mar. 2001, Peer-reviewed
      • Protein folding simulation with solvent-induced force field: Folding pathway ensemble of three-helix-bundle proteins
        S Takada
        PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, Jan. 2001, Peer-reviewed
      • Protein structures prediction using coarse-grained model : Optimizing energy function with Z score
        Fujitsuka Y; Takada S
        Seibutsu Butsuri, 2001
      • Density functional theory of macromolecular crowding
        Kinjo A.R; Takada S
        Seibutsu Butsuri, 2001
      • What determines mechanisms of protein folding, topology or sequence?
        Koga N; Takada S
        Seibutsu Butsuri, 2001
      • Protein folding simulation for genome sequence
        Takada S.
        Seibutsu Butsuri, 2000
      • Predictin of protein 3D structures : Evolutionary information and physicochemical model
        Fujitsuka Y.; Takada S.
        Seibutsu Butsuri, 2000
      • Speeding up protein conformational exploration by phantom chain model and replica exchange method
        Fukunishi H.; Watanabe O.; Takada S.
        Seibutsu Butsuri, 2000
      • Protein design and foldability
        Jin W.; Takada S.
        Seibutsu Butsuri, 2000
      • Simulating folding of helical proteins with coarse grained models
        S Takada
        PROGRESS OF THEORETICAL PHYSICS SUPPLEMENT, 2000, Peer-reviewed
      • G(o)over-bar-ing for the prediction of protein folding mechanisms
        S Takada
        PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, Oct. 1999, Peer-reviewed
      • Folding dynamics with nonadditive forces: A simulation study of a designed helical protein and a random heteropolymer
        S Takada; Z Luthey-Schulten; PG Wolynes
        JOURNAL OF CHEMICAL PHYSICS, Jun. 1999, Peer-reviewed
      • Protein folding simulation with a coarse graind model : towards structure prediction
        Takada Shoji
        Seibutsu Butsuri, 1999
      • Variational theory for site resolved protein folding free energy surfaces
        JJ Portman; S Takada; PG Wolynes
        PHYSICAL REVIEW LETTERS, Dec. 1998, Peer-reviewed
      • Microscopic theory of critical folding nuclei and reconfiguration activation barriers in folding proteins
        S Takada; PG Wolynes
        JOURNAL OF CHEMICAL PHYSICS, Dec. 1997, Peer-reviewed
      • Statics, metastable states, and barriers in protein folding: A replica variational approach
        S Takada; PG Wolynes
        PHYSICAL REVIEW E, Apr. 1997, Peer-reviewed
      • Glassy dynamics of random heteropolymers
        S Takada; PG Wolynes
        PROGRESS OF THEORETICAL PHYSICS SUPPLEMENT, 1997, Peer-reviewed
      • Multidimensional tunneling in terms of complex classical mechanics: Wave functions, energy splittings, and decay rates in nonintegrable systems
        S Takada
        JOURNAL OF CHEMICAL PHYSICS, Mar. 1996, Peer-reviewed
      • TRANSFER-MATRIX APPROACH TO TUNNELING BETWEEN KOLMOGOROV-ARNOLD-MOSER TORI
        S TAKADA; PN WALKER; M WILKINSON
        PHYSICAL REVIEW A, Nov. 1995, Peer-reviewed
      • EFFECTS OF VIBRATIONAL-EXCITATION ON MULTIDIMENSIONAL TUNNELING - GENERAL STUDY AND PROTON TUNNELING IN TROPOLONE
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        JOURNAL OF CHEMICAL PHYSICS, Mar. 1995, Peer-reviewed
      • CONSTANT CENTRIFUGAL POTENTIAL APPROXIMATION FOR ATOM-DIATOM CHEMICAL-REACTION DYNAMICS
        K MORIBAYASHI; S TAKADA; H NAKAMURA
        JOURNAL OF CHEMICAL PHYSICS, Mar. 1994, Peer-reviewed
      • WENTZEL-KRAMERS-BRILLOUIN THEORY OF MULTIDIMENSIONAL TUNNELING - GENERAL-THEORY FOR ENERGY SPLITTING
        S TAKADA; H NAKAMURA
        JOURNAL OF CHEMICAL PHYSICS, Jan. 1994, Peer-reviewed
      • REACTION DYNAMICS OF D + H2-]DH + H - EFFECTS OF POTENTIAL-ENERGY SURFACE-TOPOGRAPHY AND USEFULNESS OF THE CONSTANT CENTRIFUGAL POTENTIAL APPROXIMATION
        S TAKADA; A OHSAKI; H NAKAMURA
        JOURNAL OF CHEMICAL PHYSICS, Jan. 1992, Peer-reviewed

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        Ryo Kanada; Takeshi Kuwata; Hiroo Kenzaki; Shoji Takada
        BIOPHYSICAL JOURNAL, Jan. 2010
      • Structural Basis for the Coordinated Processive Movement of Kinesin-1 studied by Structural and Single Molecule Analyses
        Tsukasa Makino; Teppei Mori; Ryo Kanada; Ken-ichi Miyazono; Shoji Takada; Masaru Tanokura; Michio Tomishige
        BIOPHYSICAL JOURNAL, Feb. 2011
      • 1PS037 The effect of the internal tension between two heads on the nucleotide binding site of kinesin-1 studied by All-atom MD(The 50th Annual Meeting of the Biophysical Society of Japan)
        Kanada Ryo; Makino Tsukasa; Tomishige Michio; Takada Shoji
        Seibutsu Butsuri, 2012
      • 巨大生体分子のダイナミクス
        高田彰二
        CSJ Current Review, 2012
      • Protein Allostery and Sequence Design Principle
        高田彰二
        生物物理, 2012
      • Energy landscape and multiroute folding of topologically complex proteins adenylate kinase and 2out-knot (vol 109, pg 17789, 2012)
        Wenfei Li; Tsuyoshi Terakawa; Wei Wang; Shoji Takada
        PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, Nov. 2012, Peer-reviewed
      • 物理はどこまで生命を理解できるか タンパク質折れたたみ問題はどこまで理解できたか?
        高田彰二
        パリティ, 2013
      • Molecular Dynamics Simulations of Biomolecules
        TAKADA Shoji
        Journal of the Japan Society of Mechanical Engineers, 05 Feb. 2013
      • G0210202 Mechanical Behaviors of Neuro-filament:A Coarse Graining Simulation Study
        MATSUSHITA Shinji; SAFINYA Cyrus; TAKADA Shoji
        Mechanical Engineering Congress, Japan, 07 Sep. 2014
      • Heterochromatin protein 1 binding to nucleosomes studied by coarse-grained simulations
        WATANABE Shuhei; MISHIMA Yuichi; SUETAKE Isao; TAKADA Shoji
        生物物理(Web), 2015
      • Molecular Mechanism of Multi-drug Efflux Transporter, AcrB Revealed by the Synergy between Molecular Dynamics Simulation and Crystallography
        村上聡; 山根努; 池口満徳; 高田彰二
        生物物理, 2015
      • 染色体はどのようにして折り畳まれるのか?2.分子動力学シミュレーションでみるクロマチン動態
        高田彰二
        実験医学, 2018
      • Coarse-grained Biomolecular Simulations
        高田彰二
        生物物理(Web), 2021

      Books and Other Publications

      • タンパク質の立体構造入門 : 基礎から構造バイオインフォマティクスへ
        藤, 博幸; 太田, 元規; 川端, 猛; 木下, 賢吾; 白井, 剛; 諏訪, 牧子; 高田, 彰二; 高橋, 聡; 廣明, 秀一; 真柳, 浩太; 倭, 剛久; 由良, 敬
        講談社, Dec. 2010
        Find Kyoto University's collection of books :

      External funds: Kakenhi

      • Development of next-generation coarse-grained simulations towards analysis of cellular-scale assembly
        Grant-in-Aid for Scientific Research (B)
        Basic Section 43040:Biophysics-related
        Kyoto University
        高田 彰二
        From 01 Apr. 2021, To 31 Mar. 2024, Granted
        粗視化シミュレーションクロマチン;GPU計算;CafeMol;粗視化シミュレーション;クロマチン
        https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-21H02441/
      • Multiscale Theories of Genome Modality
        Grant-in-Aid for Transformative Research Areas (A)
        Transformative Research Areas, Section (III)
        Kyoto University
        高田 彰二
        From 19 Nov. 2020, To 31 Mar. 2025, Granted
        クロマチン構造転移ダイナミクス;ゲノムDNAの構造転移ダイナミクス;SMCタンパク質;染色体ダイナミクス
        https://kaken.nii.ac.jp/grant/KAKENHI-PLANNED-20H05934/
      • Theoretical study on transition path search algorithms in complex biomolecular systems
        Grant-in-Aid for Scientific Research (B)
        Kyoto University
        Shoji TAKADA
        From 19 Jul. 2016, To 31 Mar. 2019, Project Closed
        計算生物物理;生体分子シミュレーション;遷移経路探索;マルコフ状態モデル;マルコフ状態モデリング;ヌクレオソームスライディング;ストリング法
        https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-16KT0054/
      • ヌクレオソーム動構造とそのエピジェネティック制御の分子シミュレーション研究
        Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
        Biological Sciences
        Kyoto University
        高田 彰二
        From 01 Apr. 2016, To 31 Mar. 2018, Project Closed
        ヌクレオソーム;スライディング;分子シミュレーション;粗視化モデル;パイオニア因子;リモデラー;エピジェネティック
        https://kaken.nii.ac.jp/grant/KAKENHI-PUBLICLY-16H01303/
      • クロマチン構造と共役した転写因子動態の分子シミュレーション研究
        Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
        Biological Sciences
        Kyoto University
        高田 彰二
        From 01 Apr. 2015, To 31 Mar. 2017, Project Closed
        クロマチン;転写因子;分子シミュレーション;ChIP-seq;ヌクレオソーム
        https://kaken.nii.ac.jp/grant/KAKENHI-PUBLICLY-15H01351/
      • 柔らかいタンパク質・DNA分子認識のマルチスケール計算研究
        Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
        Science and Engineering
        Kyoto University
        高田 彰二
        From 01 Apr. 2014, To 31 Mar. 2016, Project Closed
        柔らかい;DNA;分子認識;マルチスケール;シミュレーション
        https://kaken.nii.ac.jp/grant/KAKENHI-PUBLICLY-26104517/
      • Theoretical studies of conformation transition dynamics and functions of biomolecules
        Grant-in-Aid for Scientific Research (B)
        Institute for Molecular Science
        Shinji SAITO
        From 01 Apr. 2013, To 31 Mar. 2016, Project Closed
        階層的動力学;構造変化;概日リズム;時計タンパク質KaiC;二次元寿命スペクトル;三時間相関関数;分子動力学;時計タンパク質;タンパク質;構造変化動力学;階層ダイナミクス;動的構造;反応座標;分子シミュレーション;多時間相関関数;生体分子;構造遍歴
        https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-25288011/
      • Structural plasticity and functional integration of multi-functional and multi-domain proteins: From structures to systems
        Grant-in-Aid for Scientific Research (A)
        Kyoto University
        Shoji Takada
        From 01 Apr. 2013, To 31 Mar. 2017, Project Closed
        タンパク質;ｐ53;DnaA;Ste5;シミュレーション;p53
        https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-25251019/
      • 転写因子DNA探索のエネルギーランドスケープ理論：速度‐親和性パラドックス
        Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
        Biological Sciences
        Kyoto University
        高田 彰二
        From 01 Apr. 2013, To 31 Mar. 2016, Project Closed
        転写因子;エネルギーランドスケープ;シミュレーション
        https://kaken.nii.ac.jp/grant/KAKENHI-PUBLICLY-25118509/
      • Ｆ型ＡＴＰ合成酵素のＦＩ複合体の構造、機能および選択性
        Grant-in-Aid for JSPS Fellows
        Kyoto University
        高田 彰二
        From 01 Apr. 2013, To 31 Mar. 2015, Project Closed
        F型ATP合成酵素;εサブユニット;分子動力学シミュレーション
        https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-13F03705/
      • 蛋白質の大振幅ゆらぎの理論解析：構造変化経路から天然変性まで
        Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
        Science and Engineering
        Kyoto University
        高田 彰二
        From 01 Apr. 2011, To 31 Mar. 2013, Project Closed
        蛋白質;シミュレーション;大振幅ゆらぎ;天然変性
        https://kaken.nii.ac.jp/grant/KAKENHI-PUBLICLY-23107716/
      • Simulation study of biomolecular motors: Structural analysis of regulation mechanisms of chemical reaction by motor movements
        Grant-in-Aid for Scientific Research (B)
        Kyoto University
        Shoji TAKADA
        From 01 Apr. 2010, To 31 Mar. 2013, Project Closed
        キネシン;ATP加水分解;分子動力学;粗視化モデル;APT加水分解
        https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-22370057/
      • Construction of protein-structure prediction method based on liquid state theory
        Grant-in-Aid for Scientific Research (B)
        Kyoto University
        Masahiro KINOSHITA
        From 01 Apr. 2010, To 31 Mar. 2013, Project Closed
        蛋白質;フォールディング;立体構造予測;水和;自由エネルギー関数;α-ヘリックス;エントロピー;膜蛋白質;ケミカルシフト;水和エントロピー;積分方程式論;形態熱力学理論;フラグメントアセンブリ法;分子性流体用積分方程式論;比較モデリング法
        https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-22300100/
      • 蛋白質のレアな大振幅ゆらぎの理論解析:クラッキングの探索
        Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
        Science and Engineering
        Kyoto University
        高田 彰二
        From 01 Apr. 2009, To 31 Mar. 2011, Project Closed
        蛋白質;シミュレーション;大振幅ゆらぎ;クラッキング
        https://kaken.nii.ac.jp/grant/KAKENHI-PUBLICLY-21107512/
      • Molecular simulation study of membrane morphology change induced by proteins
        Grant-in-Aid for Scientific Research (B)
        Kyoto University
        Shoji TAKADA
        From 01 Apr. 2007, To 31 Mar. 2010, Project Closed
        ベシクル融合;ベシクル発芽;ラフト;粗視化モデル;シミュレーション;インフルエンザ;SNARE
        https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-19370069/
      • タンパク質のフォールディング理論、立体構造予測、及び分子設計
        Grant-in-Aid for Scientific Research on Priority Areas
        Science and Engineering
        Kyoto University;Kobe University
        高田 彰二
        From 01 Apr. 2003, To 31 Mar. 2008, Project Closed
        フォールディング;立体構造予測;フラグメントアセンブリ;シャペロニン;ランドスケープ;ネットワーク;膜蛋白質;フラグメントアセンブリ法;SimFold;構造予測;デノボ;CASP;化学物理;生物物理;蛋白質;生体分子;分子機械
        https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-15076207/
      • プロテオーム時代におけるタンパク質立体構造の第一原理的予測
        Grant-in-Aid for Scientific Research on Priority Areas
        Biological Sciences
        Kobe University
        高田 彰二
        From 01 Apr. 2002, To 31 Mar. 2003, Project Closed
        立体構造予測;de novo予測;フラグメント組合せ法;CASP
        https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-14015220/
      • プロテオーム時代におけるタンパク質立体構造の第一原理的予測
        Grant-in-Aid for Scientific Research on Priority Areas (C)
        Biological Sciences
        Kobe University
        高田 彰二
        From 01 Apr. 2001, To 31 Mar. 2002, Project Closed
        ゲノム;生体分子;蛋白質;バイオテクノロジー;プロテオーム
        https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-13208018/
      • プロテオーム時代におけるタンパク質立体構造の第一原理的予測
        Grant-in-Aid for Scientific Research on Priority Areas (C)
        Biological Sciences
        Kobe University
        高田 彰二
        From 01 Apr. 2000, To 31 Mar. 2001, Project Closed
        構造予測;フォールディング;レプリカ交換法;βシート;CASP;2次構造予測
        https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-12208031/
      • 人工タンパク質の理論設計と合成
        Grant-in-Aid for Scientific Research on Priority Areas (A)
        Science and Engineering
        Kobe University
        高田 彰二
        From 01 Apr. 2000, To 31 Mar. 2002, Project Closed
        人工設計;フォールディング;エネルギーランドスケープ理論;3本ヘリクッス束;タンパク質;Zスコア;3本ヘリックス束
        https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-12042255/
      • 人工タンパク質の理論設計と合成
        Grant-in-Aid for Scientific Research on Priority Areas (A)
        Science and Engineering
        Kobe University
        高田 彰二
        From 01 Apr. 1999, To 31 Mar. 2000, Project Closed
        タンパク質;人工設計;デザイン;遺伝子合成;3本へリックス束;Zスコア;配列空間アニーリング
        https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-11166243/
      • 細胞内複雑環境下の相分離による生体分子凝縮体形成の生物物理
        Grant-in-Aid for Scientific Research (B)
        Basic Section 43040:Biophysics-related
        Kyoto University
        高田 彰二
        From 01 Apr. 2024, To 31 Mar. 2027, Granted
        生体分子凝縮体;液液相分離;転写制御;シナプス可塑性
        https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-24K01991/
      list
        Last Updated :2025/04/23

        Education

        Teaching subject(s)

        • From 01 Apr. 2024, To 31 Mar. 2025
          Introduction to Biophysics
          N488, Spring, Institute for Liberal Arts and Sciences, 2
        • From 01 Apr. 2024, To 31 Mar. 2025
          Seminar on Theoretical Biophysics IIC
          9027, Spring, Graduate School of Science, 1
        • From 01 Apr. 2024, To 31 Mar. 2025
          Seminar on Theoretical Biophysics IIB
          9026, Fall, Graduate School of Science, 1
        • From 01 Apr. 2024, To 31 Mar. 2025
          Seminar on Theoretical Biophysics IIA
          9025, Spring, Graduate School of Science, 1
        • From 01 Apr. 2024, To 31 Mar. 2025
          Seminar on Theoretical Biophysics IID
          9028, Fall, Graduate School of Science, 1
        • From 01 Apr. 2024, To 31 Mar. 2025
          Seminar on Theoretical Biophysics IA
          9021, Spring, Graduate School of Science, 1
        • From 01 Apr. 2024, To 31 Mar. 2025
          Seminar on Theoretical Biophysics ID
          9024, Fall, Graduate School of Science, 1
        • From 01 Apr. 2024, To 31 Mar. 2025
          Seminar on Theoretical Biophysics IC
          9023, Spring, Graduate School of Science, 1
        • From 01 Apr. 2024, To 31 Mar. 2025
          Seminar on Theoretical Biophysics IB
          9022, Fall, Graduate School of Science, 1
        • From 01 Apr. 2024, To 31 Mar. 2025
          Special Study CourseII(Biological Sciences) 23
          8726, Year-long, Faculty of Science, 12
        • From 01 Apr. 2024, To 31 Mar. 2025
          Seminars in Biological Science B
          4732, Fall, Faculty of Science, 2
        • From 01 Apr. 2024, To 31 Mar. 2025
          Laboratory work in Biological Science A
          3762, Spring, Faculty of Science, 2
        • From 01 Apr. 2024, To 31 Mar. 2025
          Molecular Biophysics
          3759, Fall, Faculty of Science, 2
        • From 01 Apr. 2024, To 31 Mar. 2025
          Biomolecular Science I
          2716, Spring, Faculty of Science, 2
        • From 01 Apr. 2024, To 31 Mar. 2025
          Biomolecular Science II
          2715, Fall, Faculty of Science, 2
        • From 01 Apr. 2024, To 31 Mar. 2025
          Advanced course on Theoretical Biophysics
          9001, Fall, Graduate School of Science, 2
        • From 01 Apr. 2024, To 31 Mar. 2025
          Advanced Course on Biological Science A
          9011, Spring, Graduate School of Science, 2
        • From 01 Apr. 2023, To 31 Mar. 2024
          Introduction to Biophysics
          N488, Spring, Institute for Liberal Arts and Sciences, 2
        • From 01 Apr. 2023, To 31 Mar. 2024
          Seminar on Theoretical Biophysics IC
          9023, Spring, Graduate School of Science, 1
        • From 01 Apr. 2023, To 31 Mar. 2024
          Seminar on Theoretical Biophysics IB
          9022, Fall, Graduate School of Science, 1
        • From 01 Apr. 2023, To 31 Mar. 2024
          Seminar on Theoretical Biophysics IA
          9021, Spring, Graduate School of Science, 1
        • From 01 Apr. 2023, To 31 Mar. 2024
          Seminar on Theoretical Biophysics IIB
          9026, Fall, Graduate School of Science, 1
        • From 01 Apr. 2023, To 31 Mar. 2024
          Seminar on Theoretical Biophysics IIA
          9025, Spring, Graduate School of Science, 1
        • From 01 Apr. 2023, To 31 Mar. 2024
          Seminar on Theoretical Biophysics ID
          9024, Fall, Graduate School of Science, 1
        • From 01 Apr. 2023, To 31 Mar. 2024
          Seminar on Theoretical Biophysics IID
          9028, Fall, Graduate School of Science, 1
        • From 01 Apr. 2023, To 31 Mar. 2024
          Seminar on Theoretical Biophysics IIC
          9027, Spring, Graduate School of Science, 1
        • From 01 Apr. 2023, To 31 Mar. 2024
          Special Study CourseII(Biological Sciences) 23
          8726, Year-long, Faculty of Science, 12
        • From 01 Apr. 2023, To 31 Mar. 2024
          Structural Biology
          8736, Fall, Faculty of Science, 2
        • From 01 Apr. 2023, To 31 Mar. 2024
          Seminars in Biological Science B
          4732, Fall, Faculty of Science, 2
        • From 01 Apr. 2023, To 31 Mar. 2024
          Laboratory work in Biological Science B
          3763, Spring, Faculty of Science, 2
        • From 01 Apr. 2023, To 31 Mar. 2024
          Molecular Biophysics
          3759, Fall, Faculty of Science, 2
        • From 01 Apr. 2023, To 31 Mar. 2024
          Advanced Course on Biological Science A
          9011, Spring, Graduate School of Science, 2
        • From 01 Apr. 2023, To 31 Mar. 2024
          Advanced course on Theoretical Biophysics
          9001, Fall, Graduate School of Science, 2
        • From 01 Apr. 2022, To 31 Mar. 2023
          Seminar on Theoretical Biophysics ID
          9024, Fall, Graduate School of Science, 1
        • From 01 Apr. 2022, To 31 Mar. 2023
          Seminar on Theoretical Biophysics IC
          9023, Spring, Graduate School of Science, 1
        • From 01 Apr. 2022, To 31 Mar. 2023
          Advanced Course on Biological Science A
          9011, Spring, Graduate School of Science, 2
        • From 01 Apr. 2022, To 31 Mar. 2023
          Special Study CourseII(Biological Sciences) 23
          8726, Year-long, Faculty of Science, 12
        • From 01 Apr. 2022, To 31 Mar. 2023
          Advanced course on Theoretical Biophysics
          9001, Fall, Graduate School of Science, 2
        • From 01 Apr. 2022, To 31 Mar. 2023
          Seminar on Theoretical Biophysics IIC
          9027, Spring, Graduate School of Science, 1
        • From 01 Apr. 2022, To 31 Mar. 2023
          Seminars in Biological Science B
          4732, Fall, Faculty of Science, 2
        • From 01 Apr. 2022, To 31 Mar. 2023
          Laboratory work in Biological Science B
          3763, Spring, Faculty of Science, 2
        • From 01 Apr. 2022, To 31 Mar. 2023
          Introduction to Biophysics
          N488, Spring, Institute for Liberal Arts and Sciences, 2
        • From 01 Apr. 2022, To 31 Mar. 2023
          Seminar on Theoretical Biophysics IID
          9028, Fall, Graduate School of Science, 1
        • From 01 Apr. 2022, To 31 Mar. 2023
          Seminar on Theoretical Biophysics IIA
          9025, Spring, Graduate School of Science, 1
        • From 01 Apr. 2022, To 31 Mar. 2023
          Molecular Biophysics
          3759, Fall, Faculty of Science, 2
        • From 01 Apr. 2022, To 31 Mar. 2023
          Seminar on Theoretical Biophysics IA
          9021, Spring, Graduate School of Science, 1
        • From 01 Apr. 2022, To 31 Mar. 2023
          Structural Biology
          8736, Fall, Faculty of Science, 2
        • From 01 Apr. 2022, To 31 Mar. 2023
          Seminar on Theoretical Biophysics IIB
          9026, Fall, Graduate School of Science, 1
        • From 01 Apr. 2022, To 31 Mar. 2023
          Special Lecture on Biological Sciences 7
          7746, Year-long, Faculty of Science, 1
        • From 01 Apr. 2022, To 31 Mar. 2023
          Special Lecture on Biological Science 7
          9911, Year-long, Graduate School of Science, 1
        • From 01 Apr. 2022, To 31 Mar. 2023
          Seminar on Theoretical Biophysics IB
          9022, Fall, Graduate School of Science, 1
        • From Apr. 2011, To Mar. 2012
          理論生物物理学特論
          Fall, 理学研究科
        • From Apr. 2011, To Mar. 2012
          理論生物物理学ゼミナールⅠＡ
          Spring, 理学研究科
        • From Apr. 2011, To Mar. 2012
          理論生物物理学ゼミナールＩＢ
          Fall, 理学研究科
        • From Apr. 2011, To Mar. 2012
          理論生物物理学ゼミナールⅠＣ
          Spring, 理学研究科
        • From Apr. 2011, To Mar. 2012
          理論生物物理学ゼミナールⅠＤ
          Fall, 理学研究科
        • From Apr. 2011, To Mar. 2012
          理論生物物理学ゼミナールⅡＡ
          Spring, 理学研究科
        • From Apr. 2011, To Mar. 2012
          理論生物物理学ゼミナールⅡＢ
          Fall, 理学研究科
        • From Apr. 2011, To Mar. 2012
          理論生物物理学ゼミナールⅡＣ
          Spring, 理学研究科
        • From Apr. 2011, To Mar. 2012
          理論生物物理学ゼミナールⅡＤ
          Fall, 理学研究科
        • From Apr. 2011, To Mar. 2012
          分子生物物理学
          Fall, 理学部
        • From Apr. 2011, To Mar. 2012
          生物学実習Ｅ　（３）
          Fall, 理学部
        • From Apr. 2011, To Mar. 2012
          生物学セミナ－Ｂ　（７）
          Fall, 理学部
        • From Apr. 2011, To Mar. 2012
          Biophysical Basis of Biological Phenomena
          Spring, 全学共通科目
        • From Apr. 2011, To Mar. 2012
          生物科学課題研究２３
          Year-long, 理学部
        • From Apr. 2011, To Mar. 2012
          Basic Biology B
          Fall, 全学共通科目
        • From Apr. 2012, To Mar. 2013
          Molecular Biophysics
          Fall, 理学部
        • From Apr. 2012, To Mar. 2013
          Basic Biology B
          Fall, 全学共通科目
        • From Apr. 2012, To Mar. 2013
          Biophysical Basis of Biological Phenomena
          Spring, 全学共通科目
        • From Apr. 2012, To Mar. 2013
          Seminars in Biological Science B
          Fall, 理学部
        • From Apr. 2012, To Mar. 2013
          Laboratory work in Biological Science E
          Fall, 理学部
        • From Apr. 2012, To Mar. 2013
          Special Study CourseII(Biological Sciences) 23
          Year-long, 理学部
        • From Apr. 2013, To Mar. 2014
          Molecular Biophysics
          Fall, 理学部
        • From Apr. 2013, To Mar. 2014
          Laboratory work in Biological Science E
          Fall, 理学部
        • From Apr. 2013, To Mar. 2014
          Seminars in Biological Science B
          Fall, 理学部
        • From Apr. 2013, To Mar. 2014
          Special Study CourseII(Biological Sciences) 23
          Year-long, 理学部
        • From Apr. 2013, To Mar. 2014
          Structural Biology
          Fall, 理学部
        • From Apr. 2013, To Mar. 2014
          Biophysical Basis of Biological Phenomena
          Spring, 全学共通科目
        • From Apr. 2014, To Mar. 2015
          Molecular Biophysics
          Fall, 理学部
        • From Apr. 2014, To Mar. 2015
          Laboratory work in Biological Science E
          Fall, 理学部
        • From Apr. 2014, To Mar. 2015
          Seminars in Biological Science B
          Fall, 理学部
        • From Apr. 2014, To Mar. 2015
          Special Study CourseII(Biological Sciences) 23
          Year-long, 理学部
        • From Apr. 2014, To Mar. 2015
          Structural Biology
          Fall, 理学部
        • From Apr. 2014, To Mar. 2015
          Advanced course on Theoretical Biophysics
          Fall, 理学研究科
        • From Apr. 2014, To Mar. 2015
          Seminar on Theoretical Biophysics IA
          Spring, 理学研究科
        • From Apr. 2014, To Mar. 2015
          Seminar on Theoretical Biophysics IB
          Fall, 理学研究科
        • From Apr. 2014, To Mar. 2015
          Seminar on Theoretical Biophysics IC
          Spring, 理学研究科
        • From Apr. 2014, To Mar. 2015
          Seminar on Theoretical Biophysics ID
          Fall, 理学研究科
        • From Apr. 2014, To Mar. 2015
          Seminar on Theoretical Biophysics IIA
          Spring, 理学研究科
        • From Apr. 2014, To Mar. 2015
          Seminar on Theoretical Biophysics IIB
          Fall, 理学研究科
        • From Apr. 2014, To Mar. 2015
          Seminar on Theoretical Biophysics IIC
          Spring, 理学研究科
        • From Apr. 2014, To Mar. 2015
          Seminar on Theoretical Biophysics IID
          Fall, 理学研究科
        • From Apr. 2014, To Mar. 2015
          Biophysical Basis of Biological Phenomena
          Spring, 全学共通科目
        • From Apr. 2015, To Mar. 2016
          Molecular Biophysics
          Fall, 理学部
        • From Apr. 2015, To Mar. 2016
          Structural Biology
          Fall, 理学部
        • From Apr. 2015, To Mar. 2016
          Seminar on Theoretical Biophysics IA
          Spring, 理学研究科
        • From Apr. 2015, To Mar. 2016
          Seminar on Theoretical Biophysics IB
          Fall, 理学研究科
        • From Apr. 2015, To Mar. 2016
          Seminar on Theoretical Biophysics IC
          Spring, 理学研究科
        • From Apr. 2015, To Mar. 2016
          Seminar on Theoretical Biophysics ID
          Fall, 理学研究科
        • From Apr. 2015, To Mar. 2016
          Seminar on Theoretical Biophysics IIA
          Spring, 理学研究科
        • From Apr. 2015, To Mar. 2016
          Seminar on Theoretical Biophysics IIB
          Fall, 理学研究科
        • From Apr. 2015, To Mar. 2016
          Seminar on Theoretical Biophysics IIC
          Spring, 理学研究科
        • From Apr. 2015, To Mar. 2016
          Seminar on Theoretical Biophysics IID
          Fall, 理学研究科
        • From Apr. 2015, To Mar. 2016
          Advanced course on Theoretical Biophysics
          Fall, 理学研究科
        • From Apr. 2015, To Mar. 2016
          Biophysical Basis of Biological Phenomena
          Spring, 全学共通科目
        • From Apr. 2015, To Mar. 2016
          Seminars in Biological Science B
          Fall, 理学部
        • From Apr. 2015, To Mar. 2016
          Laboratory work in Biological Science E
          Fall, 理学部
        • From Apr. 2015, To Mar. 2016
          Special Study CourseII(Biological Sciences) 23
          Year-long, 理学部
        • From Apr. 2016, To Mar. 2017
          Molecular Biophysics
          Fall, 理学部
        • From Apr. 2016, To Mar. 2017
          Structural Biology
          Fall, 理学部
        • From Apr. 2016, To Mar. 2017
          Seminar on Theoretical Biophysics IA
          Spring, 理学研究科
        • From Apr. 2016, To Mar. 2017
          Seminar on Theoretical Biophysics IB
          Fall, 理学研究科
        • From Apr. 2016, To Mar. 2017
          Seminar on Theoretical Biophysics IC
          Spring, 理学研究科
        • From Apr. 2016, To Mar. 2017
          Seminar on Theoretical Biophysics ID
          Fall, 理学研究科
        • From Apr. 2016, To Mar. 2017
          Seminar on Theoretical Biophysics IIA
          Spring, 理学研究科
        • From Apr. 2016, To Mar. 2017
          Seminar on Theoretical Biophysics IIB
          Fall, 理学研究科
        • From Apr. 2016, To Mar. 2017
          Seminar on Theoretical Biophysics IIC
          Spring, 理学研究科
        • From Apr. 2016, To Mar. 2017
          Seminar on Theoretical Biophysics IID
          Fall, 理学研究科
        • From Apr. 2016, To Mar. 2017
          Advanced course on Theoretical Biophysics
          Fall, 理学研究科
        • From Apr. 2016, To Mar. 2017
          Seminars in Biological Science B
          Fall, 理学部
        • From Apr. 2016, To Mar. 2017
          Laboratory work in Biological Science E
          Fall, 理学部
        • From Apr. 2016, To Mar. 2017
          Introduction to Biophysics
          Spring, 全学共通科目
        • From Apr. 2016, To Mar. 2017
          Special Study CourseII(Biological Sciences) 23
          Year-long, 理学部
        • From Apr. 2017, To Mar. 2018
          Molecular Biophysics
          Fall, 理学部
        • From Apr. 2017, To Mar. 2018
          Structural Biology
          Fall, 理学部
        • From Apr. 2017, To Mar. 2018
          Seminar on Theoretical Biophysics IA
          Spring, 理学研究科
        • From Apr. 2017, To Mar. 2018
          Seminar on Theoretical Biophysics IB
          Fall, 理学研究科
        • From Apr. 2017, To Mar. 2018
          Seminar on Theoretical Biophysics IC
          Spring, 理学研究科
        • From Apr. 2017, To Mar. 2018
          Seminar on Theoretical Biophysics ID
          Fall, 理学研究科
        • From Apr. 2017, To Mar. 2018
          Seminar on Theoretical Biophysics IIA
          Spring, 理学研究科
        • From Apr. 2017, To Mar. 2018
          Seminar on Theoretical Biophysics IIB
          Fall, 理学研究科
        • From Apr. 2017, To Mar. 2018
          Seminar on Theoretical Biophysics IIC
          Spring, 理学研究科
        • From Apr. 2017, To Mar. 2018
          Seminar on Theoretical Biophysics IID
          Fall, 理学研究科
        • From Apr. 2017, To Mar. 2018
          Advanced course on Theoretical Biophysics
          Fall, 理学研究科
        • From Apr. 2017, To Mar. 2018
          Seminars in Biological Science B
          Fall, 理学部
        • From Apr. 2017, To Mar. 2018
          Laboratory work in Biological Science E
          Fall, 理学部
        • From Apr. 2017, To Mar. 2018
          Introduction to Biophysics
          Spring, 全学共通科目
        • From Apr. 2017, To Mar. 2018
          Special Study CourseII(Biological Sciences) 23
          Year-long, 理学部
        • From Apr. 2018, To Mar. 2019
          Molecular Biophysics
          Fall, 理学部
        • From Apr. 2018, To Mar. 2019
          Structural Biology
          Fall, 理学部
        • From Apr. 2018, To Mar. 2019
          Seminar on Theoretical Biophysics IA
          Spring, 理学研究科
        • From Apr. 2018, To Mar. 2019
          Seminar on Theoretical Biophysics IB
          Fall, 理学研究科
        • From Apr. 2018, To Mar. 2019
          Seminar on Theoretical Biophysics IC
          Spring, 理学研究科
        • From Apr. 2018, To Mar. 2019
          Seminar on Theoretical Biophysics ID
          Fall, 理学研究科
        • From Apr. 2018, To Mar. 2019
          Seminar on Theoretical Biophysics IIA
          Spring, 理学研究科
        • From Apr. 2018, To Mar. 2019
          Seminar on Theoretical Biophysics IIB
          Fall, 理学研究科
        • From Apr. 2018, To Mar. 2019
          Seminar on Theoretical Biophysics IIC
          Spring, 理学研究科
        • From Apr. 2018, To Mar. 2019
          Seminar on Theoretical Biophysics IID
          Fall, 理学研究科
        • From Apr. 2018, To Mar. 2019
          Advanced course on Theoretical Biophysics
          Fall, 理学研究科
        • From Apr. 2018, To Mar. 2019
          Seminars in Biological Science B
          Fall, 理学部
        • From Apr. 2018, To Mar. 2019
          Laboratory work in Biological Science E
          Fall, 理学部
        • From Apr. 2018, To Mar. 2019
          Introduction to Biophysics
          Spring, 全学共通科目
        • From Apr. 2018, To Mar. 2019
          Special Study CourseII(Biological Sciences) 23
          Year-long, 理学部
        • From Apr. 2019, To Mar. 2020
          Molecular Biophysics
          Fall, 理学部
        • From Apr. 2019, To Mar. 2020
          Structural Biology
          Fall, 理学部
        • From Apr. 2019, To Mar. 2020
          Seminar on Theoretical Biophysics IA
          Spring, 理学研究科
        • From Apr. 2019, To Mar. 2020
          Seminar on Theoretical Biophysics IB
          Fall, 理学研究科
        • From Apr. 2019, To Mar. 2020
          Seminar on Theoretical Biophysics IC
          Spring, 理学研究科
        • From Apr. 2019, To Mar. 2020
          Seminar on Theoretical Biophysics ID
          Fall, 理学研究科
        • From Apr. 2019, To Mar. 2020
          Seminar on Theoretical Biophysics IIA
          Spring, 理学研究科
        • From Apr. 2019, To Mar. 2020
          Seminar on Theoretical Biophysics IIB
          Fall, 理学研究科
        • From Apr. 2019, To Mar. 2020
          Seminar on Theoretical Biophysics IIC
          Spring, 理学研究科
        • From Apr. 2019, To Mar. 2020
          Seminar on Theoretical Biophysics IID
          Fall, 理学研究科
        • From Apr. 2019, To Mar. 2020
          Advanced course on Theoretical Biophysics
          Fall, 理学研究科
        • From Apr. 2019, To Mar. 2020
          Seminars in Biological Science B
          Fall, 理学部
        • From Apr. 2019, To Mar. 2020
          Laboratory work in Biological Science E
          Fall, 理学部
        • From Apr. 2019, To Mar. 2020
          Introduction to Biophysics
          Spring, 全学共通科目
        • From Apr. 2019, To Mar. 2020
          Special Study CourseII(Biological Sciences) 23
          Year-long, 理学部
        • From Apr. 2020, To Mar. 2021
          Molecular Biophysics
          Fall, 理学部
        • From Apr. 2020, To Mar. 2021
          Structural Biology
          Fall, 理学部
        • From Apr. 2020, To Mar. 2021
          Seminar on Theoretical Biophysics IA
          Spring, 理学研究科
        • From Apr. 2020, To Mar. 2021
          Seminar on Theoretical Biophysics IB
          Fall, 理学研究科
        • From Apr. 2020, To Mar. 2021
          Seminar on Theoretical Biophysics IC
          Spring, 理学研究科
        • From Apr. 2020, To Mar. 2021
          Seminar on Theoretical Biophysics ID
          Fall, 理学研究科
        • From Apr. 2020, To Mar. 2021
          Seminar on Theoretical Biophysics IIA
          Spring, 理学研究科
        • From Apr. 2020, To Mar. 2021
          Seminar on Theoretical Biophysics IIB
          Fall, 理学研究科
        • From Apr. 2020, To Mar. 2021
          Seminar on Theoretical Biophysics IIC
          Spring, 理学研究科
        • From Apr. 2020, To Mar. 2021
          Seminar on Theoretical Biophysics IID
          Fall, 理学研究科
        • From Apr. 2020, To Mar. 2021
          Advanced course on Theoretical Biophysics
          Fall, 理学研究科
        • From Apr. 2020, To Mar. 2021
          Seminars in Biological Science B
          Fall, 理学部
        • From Apr. 2020, To Mar. 2021
          Laboratory Work in Biological Science E
          Fall, 理学部
        • From Apr. 2020, To Mar. 2021
          Introduction to Biophysics
          Spring, 全学共通科目
        • From Apr. 2020, To Mar. 2021
          Advanced Course on Biological Science A
          Spring, 理学研究科
        • From Apr. 2020, To Mar. 2021
          Special Study CourseII(Biological Sciences) 23
          Year-long, 理学部
        • From Apr. 2021, To Mar. 2022
          Molecular Biophysics
          Fall, 理学部
        • From Apr. 2021, To Mar. 2022
          Structural Biology
          Fall, 理学部
        • From Apr. 2021, To Mar. 2022
          Seminar on Theoretical Biophysics IA
          Spring, 理学研究科
        • From Apr. 2021, To Mar. 2022
          Seminar on Theoretical Biophysics IB
          Fall, 理学研究科
        • From Apr. 2021, To Mar. 2022
          Seminar on Theoretical Biophysics IC
          Spring, 理学研究科
        • From Apr. 2021, To Mar. 2022
          Seminar on Theoretical Biophysics ID
          Fall, 理学研究科
        • From Apr. 2021, To Mar. 2022
          Seminar on Theoretical Biophysics IIA
          Spring, 理学研究科
        • From Apr. 2021, To Mar. 2022
          Seminar on Theoretical Biophysics IIB
          Fall, 理学研究科
        • From Apr. 2021, To Mar. 2022
          Seminar on Theoretical Biophysics IIC
          Spring, 理学研究科
        • From Apr. 2021, To Mar. 2022
          Seminar on Theoretical Biophysics IID
          Fall, 理学研究科
        • From Apr. 2021, To Mar. 2022
          Advanced course on Theoretical Biophysics
          Fall, 理学研究科
        • From Apr. 2021, To Mar. 2022
          Seminars in Biological Science B
          Fall, 理学部
        • From Apr. 2021, To Mar. 2022
          Laboratory Work in Biological Science E
          Fall, 理学部
        • From Apr. 2021, To Mar. 2022
          Introduction to Biophysics
          Spring, 全学共通科目
        • From Apr. 2021, To Mar. 2022
          Advanced Course on Biological Science A
          Spring, 理学研究科
        • From Apr. 2021, To Mar. 2022
          Special Study CourseII(Biological Sciences) 23
          Year-long, 理学部

        Participation in PhD Defense

        • シロイヌナズナの光発芽におけるリボソーム関連遺伝子の発現についての解析
          AKAGI CHIKA, Graduate School of Science, Sub-chief Examiner
          23 Mar. 2023
        • Novel metabarcoding method reveals pronounced seasonality and high turnover rate of Imitervirales in coastal communities
          Florian Prodinger, Graduate School of Science, Sub-chief Examiner
          23 May 2022
        • Force field development for performing coarse-grained molecular dynamics simulations of biological membranes
          Ugarte La Torre Diego Renato, Graduate School of Science, Chief Examiner
          26 Jul. 2021
        list
          Last Updated :2025/04/23

          Administration

          School management (title, position)

          • From 01 Oct. 2022, To 30 Sep. 2024
            理事補
          • From 01 Apr. 2024, To 31 Mar. 2026
            学生生活委員会 委員
          • From 01 Apr. 2024, To 31 Mar. 2025
            国際高等教育院 企画評価専門委員会 情報学部会
          • From 01 Apr. 2024, To 31 Mar. 2025
            京都大学スーパーグローバルコース実施運営協議会 委員
          • From 01 Apr. 2024, To 31 Mar. 2025
            大学院教育支援機構 大学院共通・横断教育企画評価専門委員会 情報学部会
          • From 01 Apr. 2024, To 31 Mar. 2026
            大学院横断教育プログラム運営委員会 委員
          • From 11 Oct. 2023, To 30 Sep. 2024
            国際教育委員会国費外国人留学生選考小委員会 委員
          • From 01 Oct. 2022, To 30 Sep. 2024
            国際教育委員会 委員
          • From 01 Apr. 2023
            教育制度委員会共同学位プログラム専門委員会 副委員長
          • From 01 Apr. 2023
            教育制度委員会教育質保証専門委員会 委員長
          • From 01 Apr. 2023
            教育制度委員会 委員
          • From 01 Oct. 2022, To 30 Sep. 2024
            戦略調整会議 委員
          • From 01 Feb. 2022, To 30 Jun. 2022
            戦略調整会議研究戦略・人材育成検討委員会 委員
          • From 01 Apr. 2022
            大学評価委員会点検・評価実行委員会 委員長
          • From 01 Apr. 2022, To 31 Mar. 2023
            京都大学スーパーグローバルコース実施運営協議会 委員
          • From 01 Apr. 2022, To 31 Mar. 2024
            大学院横断教育プログラム運営委員会 委員
          • From 01 Apr. 2015, To 31 Mar. 2017
            広報委員会 委員
          • From 01 Apr. 2015, To 31 Mar. 2017
            広報委員会 ホームページ企画専門部会
          • From 01 Apr. 2015, To 31 Mar. 2017
            広報委員会 ホームページ企画専門部会
          • From 01 Apr. 2018, To 31 Mar. 2019
            国際高等教育院 企画評価専門委員会 初修外国語部会 委員
          • From 01 Apr. 2019, To 31 Mar. 2020
            国際高等教育院 企画評価専門委員会 初修外国語部会 委員
          • From 01 Apr. 2020, To 31 Mar. 2021
            国際高等教育院 企画評価専門委員会 初修外国語部会 委員
          • From 01 Apr. 2021
            大学評価委員会 委員
          • From 01 Oct. 2020, To 30 Sep. 2022
            戦略調整会議 委員
          • From 01 Oct. 2020, To 27 Apr. 2021
            戦略調整会議人文・社会科学の未来形発信小委員会 委員
          • From 01 Oct. 2020, To 31 Mar. 2021
            戦略調整会議ジェンダー平等の促進策小委員会 委員
          • From 01 Oct. 2020, To 31 Mar. 2022
            戦略調整会議若手研究者リクルーティング促進策小委員会 委員
          • From 01 Jun. 2021, To 31 Mar. 2022
            戦略調整会議研究支援体制の再構築（技術職員）小委員会 委員
          • From 01 Oct. 2020, To 30 Sep. 2022
            理事補
          • From 01 Oct. 2020
            スーパーグローバルコース企画運営幹事会 副議長
          • From 01 Oct. 2020, To 30 Sep. 2021
            スーパーグローバルコース企画運営幹事会 協議員
          • From 01 Oct. 2020
            教育制度委員会共同学位プログラム専門委員会 副委員長
          • From 01 Oct. 2020
            教育制度委員会教育質保証専門委員会 委員長
          • From 01 Oct. 2020, To 30 Sep. 2022
            国際教育委員会 委員
          • From 01 Oct. 2020, To 30 Sep. 2022
            国際教育委員会企画運営委員会 委員
          • From 01 Oct. 2020, To 30 Sep. 2022
            研究公正委員会 委員
          • From 01 Oct. 2020, To 30 Sep. 2022
            研究公正推進委員会 委員
          • From 01 Oct. 2020, To 30 Sep. 2022
            全学共用スペース有効活用専門委員会 委員

          Faculty management (title, position)

          • From 01 Apr. 2024, To 31 Mar. 2025
            理学部・教育委員会委員
          • From 01 Apr. 2024, To 31 Mar. 2025
            理学部・教育委員会　常任委員会委員
          • From 01 Apr. 2024, To 31 Mar. 2025
            理学部・教育委員会　情報・統計・データ科学教育委員会委員長
          • From 01 Apr. 2023, To 31 Mar. 2024
            理学研究科将来計画委員会・プロジェクトスペース委員会委員
          • From 01 Apr. 2023, To 31 Mar. 2024
            理学部・教育委員会委員
          • From 01 Apr. 2023, To 31 Mar. 2024
            理学部・教育委員会　情報・統計・データ科学教育委員会委員
          • From 01 Apr. 2023, To 31 Mar. 2024
            理学研究科SACRA学際融合部門委員会委員
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            理学研究科情報セキュリティ委員会委員
          • From 01 Apr. 2022, To 31 Mar. 2023
            理学研究科将来計画委員会委員
          • From 01 Apr. 2022, To 31 Mar. 2023
            理学部・教育委員会委員
          • From 01 Apr. 2022, To 31 Mar. 2023
            理学部・教育委員会　情報・統計・データ科学教育委員会委員
          • From 01 Apr. 2022, To 31 Mar. 2023
            理学研究科動物実験委員会委員
          • From 01 Apr. 2022, To 31 Mar. 2023
            理学研究科情報セキュリティ委員会委員
          • From 01 Apr. 2022, To 31 Mar. 2023
            理学研究科研究科会議構成員
          • From 01 Apr. 2022, To 31 Mar. 2023
            理学研究科専攻長会議構成員
          • From 01 Apr. 2022, To 31 Mar. 2023
            理学研究科危機管理委員会委員
          • From 01 Apr. 2014, To 31 Mar. 2015
            生物科学専攻・副専攻長
          • From 01 Apr. 2014, To 31 Mar. 2015
            理学研究科動物実験委員会委員
          • From 01 Apr. 2014, To 01 May 2015
            理学研究科会議構成員
          • From 01 Apr. 2015, To 31 Mar. 2016
            理学研究科自己点検・評価委員会委員
          • From 01 Apr. 2014, To 31 Mar. 2015
            理学研究科会議構成員
          • From 01 Apr. 2015, To 31 Mar. 2016
            理学研究科人権擁護委員会委員
          • From 01 Apr. 2015, To 31 Mar. 2016
            理学研究科情報・広報委員会委員
          • From 01 Apr. 2015, To 31 Mar. 2016
            理学研究科情報セキュリティ委員会委員
          • From 01 Apr. 2016, To 31 Mar. 2017
            理学研究科人権擁護委員会委員
          • From 01 Apr. 2016, To 31 Mar. 2017
            理学研究科情報・広報委員会委員
          • From 01 Apr. 2016, To 31 Mar. 2017
            理学研究科情報セキュリティ委員会委員
          • From 01 Apr. 2017, To 31 Mar. 2018
            理学研究科動物実験委員会委員
          • From 01 Apr. 2017, To 31 Mar. 2018
            理学研究科情報セキュリティ委員会委員
          • From 01 Apr. 2017, To 31 Mar. 2019
            理学研究科セミナーハウス管理運営委員会委員
          • From 01 Apr. 2017, To 31 Mar. 2018
            理学研究科基金運営委員会委員
          • From 01 Apr. 2017, To 31 Mar. 2018
            理学研究科サイエンス倶楽部運営委員会委員
          • From 01 Apr. 2017, To 31 Mar. 2018
            理学研究科会議構成員
          • From 01 Apr. 2017, To 31 Mar. 2018
            理学研究科専攻長会議構成員
          • From 01 Apr. 2017, To 31 Mar. 2018
            理学研究科生物科学専攻副専攻長
          • From 01 Apr. 2015, To 31 Mar. 2019
            福井謙一記念研究センター運営委員会委員
          • From 01 Apr. 2017, To 31 Mar. 2018
            理学研究科セミナーハウス管理運営委員会委員
          • From 01 Apr. 2017, To 31 Mar. 2019
            理学研究科基金運営委員会委員
          • From 01 May 2017, To 31 Mar. 2018
            理学研究科サイエンス倶楽部運営委員会委員
          • From 01 May 2016, To 31 Mar. 2019
            国際高等教育院企画評価専門委員会分野別部会委員
          • From 01 Apr. 2018, To 31 Mar. 2019
            理学部・教育委員会委員
          • From 01 Apr. 2018, To 31 Mar. 2019
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