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Robert, Martin

Graduate School of Pharmaceutical Sciences, Division of Bioinformatics and Chemical Genomics Program-Specific Associate Professor

Robert, Martin
list
    Last Updated :2022/05/14

    Basic Information

    Faculty

    • 国際高等教育院

    Email Address

    • Email Address

      robert.martin.4mkyoto-u.ac.jp

    Professional Memberships

    • From May 2021
      American Society for Microbiology
    • From Oct. 2020
      The Molecular Biology Society of Japan
    • Institute of Physics
    • Japanese Society for Bioinformatics
    • Metabolomics Society
    • The Institute of Complex Medical Engineering (ICME)
    • Complex Systems Society (CSS)

    Academic Degree

    • Ph.D.(McGill University)

    Research History

    • From 2003, To 2008
      :大学専任講師(有期・山形研究費「先端生命科学研究所プロジェクト」)(大学院政策・メディア研究科)
    • From 2003, To 2008
      :Assistant Professor
    • Graduate School of Media and Governance

    Language of Instruction

    • English
    • Japanese
    • French

    ID,URL

    Website(s) (URL(s))

    researchmap URL

    list
      Last Updated :2022/05/14

      Research

      Research Interests

      • microbiology
      • proteomics
      • metabolomics
      • complex systems
      • systems biology
      • 生化学一般
      • Biochemistry in general

      Research Areas

      • Life sciences, Bacteriology, metabolism, biofilm
      • Life sciences, Cell biology
      • Life sciences, Molecular biology
      • Nanotechnology/Materials, Molecular biochemistry, Biochemistry
      • Informatics, Biological, health, and medical informatics, complex systems

      Papers

      • Complexity and Possible Emergence of Intelligence in Bacterial Collectives
        Robert, Martin
        Journal of Cognitive Science, 2018, Peer-reviewed
      • Amino acid acetylation by orphan enzyme YhhY in Escherichia coli ー 大腸菌機能未知酵素YhhYによる特異的なアミノ酸のアセチル化
        Iuchi, Hitoshi; Tomita, Masaru; Robert, Martin
        Keio SFC Journal, 2016, Peer-reviewed
      • Amino acid acetylation by orphan enzyme YhhY in Escherichia coli
        Iuchi H; Tomita M; Robert M
        Keio SFC Journal, 01 Dec. 2015, Peer-reviewed
      • Global metabolic network reorganization by adaptive mutations allows fast growth of Escherichia coli on glycerol
        Cheng, Kian-Kai; Lee, Baek-Seok; Masuda, Takeshi; Ito, Takuro; Ikeda, Kazutaka; Hirayama, Akiyoshi; Deng, Lingli; Dong, Jiyang; Shimizu, Kazuyuki; Soga, Tomoyoshi; et al.
        Nature Communications, 2014, Peer-reviewed
      • Open Access and Individual Merits in Scientific Publishing
        Selvarajoo K; Robert M
        Advances in Systems Biology, 28 Mar. 2013, Peer-reviewed
      • A Broader Perspective About Organization and Coherence in Biological Systems
        Robert M
        Proceedings of the European Conference on Complex Systems 2012, 01 Jan. 2013, Peer-reviewed
      • Bioinformatics tools for mass spectroscopy-based metabolomic data processing and analysis
        Masahiro Sugimoto; Masato Kawakami; Martin Robert; Tomoyoshi Soga; Masaru Tomita
        Current Bioinformatics, Mar. 2012
      • Extracellular metabolite dynamics and temporal organization of metabolic function in E. coli
        Martin Robert; Douglas Murray; Masayuki Honma; Kenji Nakahigashi; Tomoyoshi Soga; Masaru Tomita
        2012 ICME International Conference on Complex Medical Engineering, CME 2012 Proceedings, 2012, Peer-reviewed
      • Bioinformatics Education at Keio University
        Robert M
        Asia Pacific Biotech News, Bioinformatics in Japan, 01 Jun. 2007, Peer-reviewed
      • All systems go: Launching cell simulation fueled by integrated experimental biology data
        Arita, M.; Robert, M.; Tomita, M.
        Current Opinion in Biotechnology, 2005, Peer-reviewed
      • Qualitative and quantitative analysis of amino acids by capillary electrophoresis-electrospray ionization-tandem mass spectrometry
        Soga, T.; Kakazu, Y.; Robert, M.; Tomita, M.; Nishioka, T.
        Electrophoresis, 2004, Peer-reviewed
      • Semenogelin I: A coagulum forming, multifunctional seminal vesicle protein
        Robert, M.; Gagnon, C.
        Cellular and Molecular Life Sciences, 1999, Peer-reviewed
      • Inactivation of tumor suppressor p53 by mot-2, a hsp70 family member
        Wadhwa, R.; Takano, S.; Robert, M.; Yoshida, A.; Nomura, H.; Reddel, R.R.; Mitsui, Y.; Kaul, S.C.
        Journal of Biological Chemistry, 1998, Peer-reviewed
      • Characterization of prostate-specific antigen proteolytic activity on its major physiological substrate, the sperm motility inhibitor precursor/semenogelin I
        Robert, M.; Gibbs, B.F.; Jacobson, E.; Gagnon, C.
        Biochemistry, 1997, Peer-reviewed
      • Purification and characterization of the active precursor of a human sperm motility inhibitor secreted by the seminal vesicles: Identity with semenogelin
        Robert, M.; Gagnon, C.
        Biology of Reproduction, 1996, Peer-reviewed
      • Sperm motility inhibitor from human seminal plasma: Association with semen coagulum
        Robert, M.; Gagnon, C.
        Human Reproduction, 1995, Peer-reviewed
      • Sperm motility inhibitor from human seminal plasma: Presence of a precursor molecule in seminal vesicle fluid and its molecular processing after ejaculation
        Robert, M.; Gagnon, C.
        International Journal of Andrology, 1994, Peer-reviewed

      Misc.

      • Invitation to Metabolomics 2011
        Robert Martin
        Metabolomics, 2011
      • メタボロミクスによる酵素機能解析研究
        斎藤 菜摘; ロベール マルタン
        生化学, 2011
      • [Metabolomics approach for enzyme discovery].
        Saito, N.; Robert, M.
        Seikagaku. The Journal of Japanese Biochemical Society, 2011, Peer-reviewed
      • Prediction of metabolite identity from accurate mass, migration time prediction and isotopic pattern information in CE-TOFMS data
        Sugimoto, M.; Hirayama, A.; Robert, M.; Abe, S.; Soga, T.; Tomita, M.
        Electrophoresis, 2010, Peer-reviewed
      • Differential metabolomics software for capillary electrophoresis-mass spectrometry data analysis
        Sugimoto, M.; Hirayama, A.; Ishikawa, T.; Robert, M.; Baran, R.; Uehara, K.; Kawai, K.; Soga, T.; Tomita, M.
        Metabolomics, 2010, Peer-reviewed
      • Metabolite profiling reveals YihU as a novel hydroxybutyrate dehydrogenase for alternative succinic semialdehyde metabolism in Escherichia coli
        Saito, N.; Robert, M.; Kochi, H.; Matsuo, G.; Kakazu, Y.; Soga, T.; Tomita, M.
        Journal of Biological Chemistry, 2009, Peer-reviewed
      • E. coli metabolomics: Capturing the complexity of a "simple" model
        Martin Robert; Tomoyoshi Soga; Masaru Tomita
        Topics in Current Genetics, 2007
      • Multiple high-throughput analyses monitor the response of E. coli to perturbations
        Ishii, N.; Nakahigashi, K.; Baba, T.; Robert, M.; Soga, T.; Kanai, A.; Hirasawa, T.; Naba, M.; Hirai, K.; Hoque, A.; Ho, P.Y.; Kakazu, Y.; Sugawara, K.; Igarashi, S.; Harada, S.; Masuda, T.; Sugiyama, N.; Togashi, T.; Hasegawa, M.; Takai, Y.; Yugi, K.; Arakawa, K.; Iwata, N.; Toya, Y.; Nakayama, Y.; Nishioka, T.; Shimizu, K.; Mori, H.; Tomita, M.
        Science, 2007, Peer-reviewed
      • Visualization of three-way comparisons of omics data
        Baran, R.; Robert, M.; Suematsu, M.; Soga, T.; Tomita, M.
        BMC Bioinformatics, 2007, Peer-reviewed
      • Prediction of liquid chromatographic retention times of peptides generated by protease digestion of the Escherichia coli proteome using artificial neural networks
        Kosaku Shinoda; Masahiro Sugimoto; Nozomu Yachie; Naoyuki Sugiyama; Takeshi Masuda; Martin Robert; Tomoyoshi Soga; Masaru Tomita
        JOURNAL OF PROTEOME RESEARCH, Dec. 2006
      • MathDAMP: A package for differential analysis of metabolite profiles
        Baran, R.; Kochi, H.; Saito, N.; Suematsu, M.; Soga, T.; Nishioka, T.; Robert, M.; Tomita, M.
        BMC Bioinformatics, 2006, Peer-reviewed
      • Prediction of liquid chromatographic retention times of peptides generated by protease digestion of the Escherichia coli proteome usina artificial neural networks
        Shinoda, K.; Sugimoto, M.; Yachie, N.; Sugiyama, N.; Masuda, T.; Robert, M.; Soga, T.; Tomita, M.
        Journal of Proteome Research, 2006, Peer-reviewed
      • Differential metabolomics reveals ophthalmic acid as an oxidative stress biomarker indicating hepatic glutathione consumption
        Soga, T.; Baran, R.; Suematsu, M.; Ueno, Y.; Ikeda, S.; Sakurakawa, T.; Kakazu, Y.; Ishikawa, T.; Robert, M.; Nishioka, T.; Tomita, M.
        Journal of Biological Chemistry, 2006, Peer-reviewed
      • Metabolomics approach for enzyme discovery
        Saito, N.; Robert, M.; Kitamura, S.; Baran, R.; Soga, T.; Mori, H.; Nishioka, T.; Tomita, M.
        Journal of Proteome Research, 2006, Peer-reviewed
      • Toward large-scale modeling of the microbial cell for computer simulation
        Ishii, N.; Robert, M.; Nakayama, Y.; Kanai, A.; Tomita, M.
        Journal of Biotechnology, 2004, Peer-reviewed

      Presentations

      • Exo-metabolome dynamics during continuous culture of E. coli.
        The 12th International Conference on Systems Biology (ICSB 2011), 2011
      • Analysis of extracellular metabolite dynamics during E. coli continuous culture.
        6th Metabolome symposium, 2011
      • Exo-metabolome dynamics during continuous culture of E. coli.
        The 12th International Conference on Systems Biology (ICSB 2011), 2011
      • Analysis of extracellular metabolite dynamics during E. coli continuous culture.
        6th Metabolome symposium, 2011
      • Enzyme discovery and metabolic pathway elucidation in E. coli using metabolomics
        UK-Japan workshop on systems biology., 2010
      • Improving metabolite annotation in untargeted MS-based metabolomics datasets.
        Metabolomics 2010, 2010
      • Improving metabolite annotation in untargeted MS-based metabolomics datasets.
        Metabolomics 2010, 2010
      • Enzyme discovery and metabolic pathway elucidation in E. coli using metabolomics
        UK-Japan workshop on systems biology., 2010
      • A generic mass spectrometry-based strategy to assign activity to orphan metabolic enzymes.
        5th Metabolomics Society Conference, 2009
      • Metabolite profiling reveals a novel enzyme involved in succinic semialdehyde metabolic pathway in Escherichia coli.
        5th Metabolomics Society Conference, 2009
      • Automatic processing of CE-TOFMS metabolome data.
        5th Metabolomics Society Conference 2009, 2009
      • A mass spectrometry-based strategy to assign activity to uncharacterized metabolic enzymes.
        4th Metabolome symposium, 2009
      • Automatic processing of CE-TOFMS metabolome data.
        5th Metabolomics Society Conference 2009, 2009
      • Metabolite profiling by capillary electrophoresis mass spectrometry for enzyme discovery.
        92nd Canadian Chemistry Conference and Exhibition, 2009
      • Metabolite profiling by capillary electrophoresis mass spectrometry for enzyme discovery.
        92nd Canadian Chemistry Conference and Exhibition, 2009
      • A generic mass spectrometry-based strategy to assign activity to orphan metabolic enzymes.
        5th Metabolomics Society Conference, 2009
      • Metabolite profiling reveals a novel enzyme involved in succinic semialdehyde metabolic pathway in Escherichia coli.
        5th Metabolomics Society Conference, 2009
      • A mass spectrometry-based strategy to assign activity to uncharacterized metabolic enzymes.
        4th Metabolome symposium, 2009
      • Filling metabolic pathway gaps using generic mass spectrometry assays.
        9th International Conference on Systems Biology, 2008
      • A Software Tool for Differential Analysis of CE-MS based Metabolome Data.
        Fourth Annual Meeting of the Metabolomics Society, 2008
      • Associating uncharacterized enzymes with missing metabolic reactions using simple mass spectrometry-based in vitro assays.
        5th International Conference on Plant Metabolomics, 2008
      • Associating uncharacterized enzymes with missing metabolic reactions using simple mass spectrometry-based in vitro assays.
        5th International Conference on Plant Metabolomics, 2008
      • A Software Tool for Differential Analysis of CE-MS based Metabolome Data.
        Fourth Annual Meeting of the Metabolomics Society, 2008

      Books and Other Publications

      External funds: Kakenhi

      • Spatiotemporal mapping of gene expression to reveal mechanisms of cellular differentiation in E. coli biofilms
        Grant-in-Aid for Scientific Research (C)
        Basic Section 38020:Applied microbiology-related
        Kyoto University
        Robert Martin
        From 01 Apr. 2021, To 31 Mar. 2024, Granted
        Escherichia coli;biofilm;gene expression;proteome;differentiation
      • Visualization of metabolic dynamics during pattern formation in bacteria
        Grant-in-Aid for Scientific Research (C)
        Tohoku University
        Martin Robert
        From 01 Apr. 2016, To 31 Mar. 2019, Project Closed
        gene expression;bacterial colony;biofilm;division of labor;time-lapse fluorescence;differentiation;pattern formation;metabolic activity;fluorescent reporter;fusion protein;cyclic di-nucleotides;bacterial macro-colonies;fluorescence;c-di-GMP;bacterial colonies;bacterial strains;細胞間情報伝達;メタボロミックス;生化学;微生物代謝;複雑系
      • Functional proteomics and metabolomics for enzyme discovery in E. coli
        Grant-in-Aid for Scientific Research (C)
        Keio University
        Martin ROBERT
        Project Closed
        プロテオーム;メタボローム;機能ゲノミックス;分析科学;酵素;バイオテクノロジー;ゲノム;バイォテクノロジー, proteomics;metabolomics;functional genomics;analytical chemistry;enzyme;biotechnology;genome
      list
        Last Updated :2022/05/14

        Education

        Teaching subject(s)

        • From Apr. 2021, To Mar. 2022
          Data Analysis Practice I-E2
          Spring, 全学共通科目
        • From Apr. 2021, To Mar. 2022
          Introduction to Biological Data Analysis-E2
          Spring, 全学共通科目
        • From Apr. 2021, To Mar. 2022
          Introduction to Computational Molecular Biology-E2
          Fall, 全学共通科目
        • From Apr. 2021, To Mar. 2022
          Research Training(Microbial Systems Biology)
          Year-long, 薬学部
        • From Apr. 2021, To Mar. 2022
          Theory and Practice in Scientific Writing and Discussion (Pharmaceutical Sciences, English)B-E3
          Fall, 全学共通科目
        list
          Last Updated :2022/05/14

          Administration

          Faculty management (title, position)

          • From 01 Apr. 2020, To 31 Mar. 2022
            建物・設備・機器管理運営委員会 委員
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            Last Updated :2022/05/14

            Academic, Social Contribution

            Committee Memberships

            • From Feb. 2012
              Member of Editorial Board, Frontiers in Plant Systems Biology
            • From Feb. 2012
              Member of Editorial Board, Frontiers in Plant Systems Biology
            • From Sep. 2009, To Nov. 2011
              Member and web site developer, workshop co-organizer., UK-Japan Microbial Systems Biology Workgroup
            • From Sep. 2009, To Nov. 2011
              Member and web site developer, workshop co-organizer., UK-Japan Microbial Systems Biology Workgroup
            • From 2005
              Member, Metabolomics Society
            • From 2005
              Member, Metabolomics Society
            • From 2004
              Member, Japanese Society for Bioinformatics (日本バイオインフォマティクス学会
            • From 2004
              Member, Japanese Society for Bioinformatics (日本バイオインフォマティクス学会)

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