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Okada, Takashi
Institute for Life and Medical Sciences (LiMe) Associate Professor
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Last Updated :2025/05/29
Basic Information
Email Address
Email Address
okada.takashi.3z
kyoto-u.ac.jp
Professional Memberships
Academic Degree
Academic Resume (Graduate Schools)
Academic Resume (Undergraduate School/Majors)
ID,URL
ORCID ID
J-Global ID
researchmap URL
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Last Updated :2025/05/29
Research
Research Interests
Research Areas
- Natural sciences, Applied mathematics and statistics, Network science
- Life sciences, Evolutionary biology, Population genetics, evolutionary biology
Papers
- Uncovering heterogeneous inter-community disease transmission from neutral allele frequency time seriesTakashi Okada; Giulio Isacchini; QinQin Yu; Oskar Hallatschek05 Dec. 2024
- Structural Reduction of Hypergraphs Based on TopologyYuji Hirono; Takashi Okada; Hiroyasu Miyazaki; Yoshimasa HidakaProceedings of Blockchain in Kyoto 2021 (BCK21), 10 Nov. 2021
- Uncovering Bifurcation Behaviors of Biochemical Reaction Systems from Network TopologyYong-Jin Huang; Takashi Okada; Atsushi Mochizuki21 Nov. 2024
- BayesianSSA: a Bayesian statistical model based on structural sensitivity analysis for predicting responses to enzyme perturbations in metabolic networksShion Hosoda; Hisashi Iwata; Takuya Miura; Maiko Tanabe; Takashi Okada; Atsushi Mochizuki; Miwa Sato16 Mar. 2024
- Patterns of change in regulatory modules of chemical reaction systems induced by network modificationAtsuki Hishida; Takashi Okada; Atsushi MochizukiPNAS Nexus, 21 Dec. 2023
- Patterns of change in regulatory modules of chemical reaction systems induced by network modificationAtsuki Hishida; Takashi Okada; Atsushi MochizukiPNAS Nexus, 24 Nov. 2023
- Information-transfer characteristics in network motifsFumito Mori; Takashi OkadaPhysical Review Research, 24 Jan. 2023
- Information-transfer characteristics in network motifsFumito Mori; Takashi OkadaPhysical Review Research, 24 Jan. 2023, Peer-reviewed
- Lineage frequency time series reveal elevated levels of genetic drift in SARS-CoV-2 transmission in EnglandQinQin Yu; Joao Ascensao; Takashi Okada; Olivia Boyd; Erik Volz; Oskar Hallatschek22 Nov. 2022
- Dynamic sampling bias and overdispersion induced by skewed offspring distributionsTakashi Okada; Oskar HallatschekGenetics, 10 Mar. 2021
- Flux-augmented bifurcation analysis in chemical reaction network systemsTakashi Okada; Atsushi Mochizuki; Mikio Furuta; Je-Chiang TsaiPhysical Review E, 15 Jun. 2021
- Diagrammatic expansion of information flows in stochastic Boolean networksFumito Mori; Takashi OkadaPhysical Review Research, 29 Dec. 2020
- Finding regulatory modules of chemical reaction systemsYuhei Yamauchi; Atsuki Hishida; Takashi Okada; Atsushi Mochizuki16 Oct. 2023
Misc.
- Dynamic sampling bias and overdispersion induced by skewed offspring distributionsTakashi Okada; Oskar Hallatschek10 Mar. 2021
- Dynamic sampling bias and overdispersion induced by skewed offspring distributionsTakashi Okada; Oskar Hallatschek; K JainGenetics, 10 Dec. 2021
- Flux-augmented bifurcation analysis in chemical reaction network systemsTakashi Okada; Atsushi Mochizuki; Mikio Furuta; Je-Chiang TsaiPhysical Review E, 15 Jun. 2021
- Structural reduction of chemical reaction networks based on topologyYuji Hirono; Takashi Okada; Hiroyasu Miyazaki; Yoshimasa HidakaPhysical Review Research, 15 Feb. 2021
- Diagrammatic expansion of information flows in stochastic Boolean networksFumito Mori; Takashi OkadaPhysical Review Research, 29 Dec. 2020
- Structural Bifurcation Analysis in Chemical Reaction NetworksTakashi Okada; Je-Chiang Tsai; Atsushi Mochizuki01 Nov. 2017
- Sensitivity and Network Topology in Chemical Reaction SystemsTakashi Okada; Atsushi Mochizuki30 Mar. 2017
- Law of localization in chemical reaction networksTakashi Okada; Atsushi Mochizuki28 Jun. 2016
- Defect branes as Alice stringsTakashi Okada; Yuho Sakatani04 Nov. 2014
- Emergent bubbling geometries in the plane wave matrix modelYuhma Asano; Goro Ishiki; Takashi Okada; Shinji Shimasaki20 Jan. 2014
- Exact results for perturbative partition functions of theories with SU(2|4) symmetryYuhma Asano; Goro Ishiki; Takashi Okada; Shinji Shimasaki02 Nov. 2012
- Rotating string in doubled geometry with generalized isometriesToru Kikuchi; Takashi Okada; Yuho Sakatani24 May 2012
- Large-N reduction for N=2 quiver Chern-Simons theories on S^3 and localization in matrix modelsYuhma Asano; Goro Ishiki; Takashi Okada; Shinji Shimasaki02 Mar. 2012
- Solving the Naturalness Problem by Baby Universes in the Lorentzian MultiverseHikaru Kawai; Takashi Okada11 Oct. 2011
- Evidence for Duality of Conifold from Fundamental StringTakahiro Nishinaka; Takashi Okada; Tadashi Okazaki; Satoshi YamaguchiJournal of High Energy Physics, 19 Jul. 2011
- Asymptotically Vanishing Cosmological Constant in the MultiverseHikaru Kawai; Takashi Okada10 Apr. 2011
- A Realistic Extension of Gauge-Mediated SUSY-Breaking Model with Superconformal Hidden SectorMasaki Asano; Junji Hisano; Takashi Okada; Shohei Sugiyama25 Oct. 2008
Awards
- 17 Aug. 2019第15回日本数理学会研究奨励賞
- 14 Mar. 2019第13回日本物理学会領域11若手奨励賞
- 12 Sep. 2017第12回素粒子メダル奨励賞（素粒子論グループ）
- 29 Jun. 2017第8回数理デザイン道場ポスター賞（JST/CREST数理デザイン道場）
External funds: Kakenhi
- 適応度進行波モデルと集団遺伝学に基づくクローン干渉を伴う適応進化の解明Grant-in-Aid for Scientific Research (C)Basic Section 45020:Evolutionary biology-relatedKyoto University岡田 崇From 01 Apr. 2022, To 31 Mar. 2025, Granted集団遺伝学;ウイルス進化;クローン干渉;領域拡大;進化;コロナウイルス;子孫数分布;季節性インフルエンザ
- 情報流のパス展開理論と神経ネットワーク活動計測に基づく生物の行動決定機構の解明Grant-in-Aid for Scientific Research (C)Basic Section 13010:Mathematical physics and fundamental theory of condensed matter physics-relatedKyushu University森 史From 01 Apr. 2022, To 31 Mar. 2025, Granted複雑ネットワーク;情報流;神経回路;摂動論;全脳イメージング
- Theory of information flow on complex networks and elucidation of adaptation mechanisms of organisms to their environmentsGrant-in-Aid for Scientific Research (C)Basic Section 13010:Mathematical physics and fundamental theory of condensed matter physics-relatedKyushu University;The University of Electro-CommunicationsFumito MoriFrom 01 Apr. 2019, To 31 Mar. 2023, Project Closed複雑ネットワーク;情報流;ブーリアンネットワーク;数理生物学;環境適応
- 過分散を伴う遺伝的浮動の進化理論と集団遺伝学的統計手法の革新Grant-in-Aid for Scientific Research (C)Basic Section 45020:Evolutionary biology-relatedKyoto University岡田 崇From 01 Apr. 2025, To 31 Mar. 2028, Adopted
list
Last Updated :2025/05/29
Education
Teaching subject(s)
- From 01 Apr. 2024, To 31 Mar. 2025Seminar on Mathematical Bioscience IID9145, Fall, Graduate School of Science, 1
- From 01 Apr. 2024, To 31 Mar. 2025Seminar on Mathematical Bioscience IIC9144, Spring, Graduate School of Science, 1
- From 01 Apr. 2024, To 31 Mar. 2025Seminar on Mathematical Bioscience IIB9143, Fall, Graduate School of Science, 1
- From 01 Apr. 2024, To 31 Mar. 2025Seminar on Mathematical Bioscience IB9139, Fall, Graduate School of Science, 1
- From 01 Apr. 2024, To 31 Mar. 2025Seminar on Mathematical Bioscience IA9138, Spring, Graduate School of Science, 1
- From 01 Apr. 2024, To 31 Mar. 2025Seminar on Mathematical Bioscience IIA9142, Spring, Graduate School of Science, 1
- From 01 Apr. 2024, To 31 Mar. 2025Seminar on Mathematical Bioscience ID9141, Fall, Graduate School of Science, 1
- From 01 Apr. 2024, To 31 Mar. 2025Seminar on Mathematical Bioscience IC9140, Spring, Graduate School of Science, 1
- From 01 Apr. 2024, To 31 Mar. 2025Advanced Course on Biological Science A9011, Spring, Graduate School of Science, 2
- From 01 Apr. 2023, To 31 Mar. 2024Seminar on Mathematical Bioscience IB9139, Fall, Graduate School of Science, 1
- From 01 Apr. 2023, To 31 Mar. 2024Seminar on Mathematical Bioscience IA9138, Spring, Graduate School of Science, 1
- From 01 Apr. 2023, To 31 Mar. 2024Seminar on Mathematical Bioscience IIA9142, Spring, Graduate School of Science, 1
- From 01 Apr. 2023, To 31 Mar. 2024Seminar on Mathematical Bioscience ID9141, Fall, Graduate School of Science, 1
- From 01 Apr. 2023, To 31 Mar. 2024Seminar on Mathematical Bioscience IC9140, Spring, Graduate School of Science, 1
- From 01 Apr. 2023, To 31 Mar. 2024Seminar on Mathematical Bioscience IIB9143, Fall, Graduate School of Science, 1
- From 01 Apr. 2023, To 31 Mar. 2024Seminar on Mathematical Bioscience IID9145, Fall, Graduate School of Science, 1
- From 01 Apr. 2023, To 31 Mar. 2024Seminar on Mathematical Bioscience IIC9144, Spring, Graduate School of Science, 1
- From 01 Apr. 2023, To 31 Mar. 2024Advanced Course on Biological Science A9011, Spring, Graduate School of Science, 2
