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Sakai, Toshiyuki

Graduate School of Agriculture, Division of Applied Biosciences Assistant Professor

Sakai, Toshiyuki
list
    Last Updated :2024/05/22

    Basic Information

    Faculty

    • 農学部

    Academic Degree

    • 修士(農学)(京都大学)

    ID,URL

    researchmap URL

    list
      Last Updated :2024/05/22

      Research

      Papers

      • A chromosome-scale genome assembly of Timorese crabgrass (Digitaria radicosa): a useful genomic resource for the Poaceae
        Koki Minoji; Toshiyuki Sakai
        biorxiv, 17 May 2024
      • The N-terminal domains of NLR immune receptors exhibit structural and functional similarities across divergent plant lineages
        Khong-Sam Chia; Jiorgos Kourelis; Albin Teulet; Martin Vickers; Toshiyuki Sakai; Joseph F Walker; Sebastian Schornack; Sophien Kamoun; Philip Carella
        The Plant Cell, 10 Apr. 2024, Peer-reviewed
      • The NRC0 gene cluster of sensor and helper NLR immune receptors is functionally conserved across asterid plants
        Toshiyuki Sakai; Claudia Martinez-Anaya; Mauricio P Contreras; Sophien Kamoun; Chih-Hang Wu; Hiroaki Adachi
        biorxiv, 23 Oct. 2023
      • Reproductive Responses to Increased Shoot Density and Global Change Drivers in a Widespread Clonal Wetland Species, Schoenoplectus americanus
        Aoi Kudoh; J. Patrick Megonigal; J. Adam Langley; Genevieve L. Noyce; Toshiyuki Sakai; Dennis F. Whigham
        Estuaries and Coasts, 15 Sep. 2023, Peer-reviewed
      • Jurassic NLR: conserved and dynamic evolutionary features of the atypically ancient immune receptor ZAR1
        Hiroaki Adachi; Toshiyuki Sakai; Jiorgos Kourelis; Hsuan Pai; Jose L Gonzalez Hernandez; Yoshinori Utsumi; Motoaki Seki; Abbas Maqbool; Sophien Kamoun
        The Plant Cell, 19 Jul. 2023, Peer-reviewed
      • Whole-genome analysis of recombinant inbred rice lines reveals a quantitative trait locus on chromosome 3 with genotype-by-environment interaction effects
        Toshiyuki Sakai; Tomoaki Fujioka; Toyokazu Uemura; Shinichi Saito; Ryohei Terauchi; Akira Abe
        G3 Genes|Genomes|Genetics, 13 Apr. 2023, Peer-reviewed, Lead author
      • An atypical NLR protein modulates the NRC immune receptor network in Nicotiana benthamiana
        Hiroaki Adachi; Toshiyuki Sakai; Adeline Harant; Hsuan Pai; Kodai Honda; AmirAli Toghani; Jules Claeys; Cian Duggan; Tolga O. Bozkurt; Chih-hang Wu; Sophien Kamoun
        PLOS Genetics, 19 Jan. 2023, Peer-reviewed
      • Isolation of Pikps, an allele of Pik, from the aus rice cultivar Shoni.
        Basavaraj Kovi; Toshiyuki Sakai; Akira Abe; Eiko Kanzaki; Ryohei Terauchi; Motoki Shimizu
        Genes & genetic systems, 07 Jan. 2023
      • RefPlantNLR is a comprehensive collection of experimentally validated plant disease resistance proteins from the NLR family
        Jiorgos Kourelis; Toshiyuki Sakai; Hiroaki Adachi; Sophien Kamoun
        PLOS Biology, 20 Oct. 2021, Peer-reviewed
      • A vector system for fast-forward studies of the HOPZ-ACTIVATED RESISTANCE1 (ZAR1) resistosome in the model plant Nicotiana benthamiana
        Adeline Harant; Hsuan Pai; Toshiyuki Sakai; Sophien Kamoun; Hiroaki Adachi
        Plant Physiology, 11 Oct. 2021, Peer-reviewed
      • Chromatin accessibility landscapes activated by cell-surface and intracellular immune receptors
        Pingtao Ding; Toshiyuki Sakai; Ram Krishna Shrestha; Nicolas Manosalva Perez; Wenbin Guo; Bruno Pok Man Ngou; Shengbo He; Chang Liu; Xiaoqi Feng; Runxuan Zhang; Klaas Vandepoele; Dan MacLean; Jonathan D G Jones
        Journal of Experimental Botany, 13 Aug. 2021, Peer-reviewed
      • RIL-StEp: epistasis analysis of rice recombinant inbred lines (RILs) reveals candidate interacting genes that control seed hull color and leaf chlorophyll content
        Toshiyuki Sakai; Akira Abe; Motoki Shimizu; Ryohei Terauchi
        G3 Genes|Genomes|Genetics, 19 Apr. 2021, Peer-reviewed, Lead author
      • High‐resolution expression profiling of selected gene sets during plant immune activation
        Pingtao Ding; Bruno Pok Man Ngou; Oliver J. Furzer; Toshiyuki Sakai; Ram Krishna Shrestha; Dan MacLean; Jonathan D. G. Jones
        Plant Biotechnology Journal, Jul. 2020, Peer-reviewed
      • An N-terminal motif in NLR immune receptors is functionally conserved across distantly related plant species
        Hiroaki Adachi; Mauricio P Contreras; Adeline Harant; Chih-hang Wu; Lida Derevnina; Toshiyuki Sakai; Cian Duggan; Eleonora Moratto; Tolga O Bozkurt; Abbas Maqbool; Joe Win; Sophien Kamoun
        eLife, 27 Nov. 2019, Peer-reviewed

      Misc.

      • An atypical NLR protein negatively regulates the NRC immune receptor network in Nicotiana benthamiana.
        安達広明; 安達広明; 堺俊之; 堺俊之; WU Chih-hang; WU Chih-hang; KAMOUN Sophien
        日本植物病理学会報, 2022
      • Identification of a novel NRL2-interacting protein involved in leaf morphology in rice
        石川和也; 杉原優; 伊藤和江; 宇津志博恵; 小笠原由美子; 神崎英子; 堺俊之; 寺内良平; 阿部陽
        育種学研究, 2022
      • Evolution of the NLR immune receptors in plants
        安達広明; 安達広明; 大津美奈; 大津美奈; 堺俊之
        月刊細胞, 2022
      • Gene-environment interaction study on agronomic traits using rice recombinant inbred lines
        藤岡智明; 阿部陽; 堺俊之; 堺俊之; 寺内良平; 仲條眞介; 上村豊和; 川島史寛; 斎藤真一; 小林恭子
        日本作物学会講演会要旨集, 2020

      Awards

      • 28 Oct. 2023
        第6回植物インフォマティクス研究会 優秀発表賞
      • 13 Oct. 2022
        日本育種学会 第142回講演会 優秀発表賞
        イネNAM集団を用いたGenomic Predictionモデルの構築および育種への応用, Japan society

      External funds: Kakenhi

      • Elucidation of transcriptional regulation by rice immune response using eQTL analysis
        Grant-in-Aid for Research Activity Start-up
        0602:Agricultural and environmental biology and related fields
        Kyoto University
        Toshiyuki Sakai
        From 30 Aug. 2021, To 31 Mar. 2023, Project Closed
        eQTL解析;発現差異解析;eQTL;遺伝子発現;ゲノムワイド関連解析;抵抗性遺伝子
      • Elucidation of transcriptional regulation of rice immune response using comparative transcriptome analysis
        Grant-in-Aid for Scientific Research (C)
        Basic Section 39040:Plant protection science-related
        Kyoto University
        堺 俊之
        From 01 Apr. 2022, To 31 Mar. 2025, Granted
        種間比較発現解析;生物種間の発現解析;発現差異解析;NLR
      • イネNAM集団を用いた高精度ゲノミックデザインモデルの構築と有用ハプロタイプの解明
        Grant-in-Aid for Scientific Research (B)
        Basic Section 39010:Science in plant genetics and breeding-related
        Iwate Biotechnology Research Center
        阿部 陽
        From 01 Apr. 2023, To 31 Mar. 2026, Granted
        イネ;ゲノミック予測;デザイン育種;QTL;エピスタシス
      • Advancing fundamental knowledge of NLR biology to enhance crop resistance against pathogens
        Fund for the Promotion of Joint International Research (International Leading Research )
        Biological Sciences
        Kyoto University
        寺内 良平
        From 17 Nov. 2023, To 31 Mar. 2030, Granted
        抵抗性タンパク質;植物病害防除;イネ;コムギ;ウリ類
      list
        Last Updated :2024/05/22

        Education

        Teaching subject(s)

        • From 01 Apr. 2024, To 31 Mar. 2025
          Introduction to Bioinformatics for Genome Analysis
          5323, Fall, Faculty of Agriculture, 2
        • From 01 Apr. 2024, To 31 Mar. 2025
          Seminar in Plant Resource Science
          5303, Year-long, Faculty of Agriculture, 2
        • From 01 Apr. 2023, To 31 Mar. 2024
          Practice of Basic Informatics (Faculty of Agriculture)
          T007, Fall, Institute for Liberal Arts and Sciences, 2
        • From 01 Apr. 2023, To 31 Mar. 2024
          Seminar in Origin of Cultivated Plants2
          DB21, Year-long, Graduate School of Agriculture, 3
        • From 01 Apr. 2023, To 31 Mar. 2024
          Seminar in Origin of Cultivated Plants1
          DB20, Year-long, Graduate School of Agriculture, 3
        • From 01 Apr. 2023, To 31 Mar. 2024
          Experiments on Evolution of Cultivated Plants2
          DC21, Year-long, Graduate School of Agriculture, 6
        • From 01 Apr. 2023, To 31 Mar. 2024
          Experiments on Evolution of Cultivated Plants1
          DC20, Year-long, Graduate School of Agriculture, 6
        • From 01 Apr. 2023, To 31 Mar. 2024
          Seminar in Plant Resource Science
          5303, Year-long, Faculty of Agriculture, 2
        • From 01 Apr. 2023, To 31 Mar. 2024
          Introduction to Bioinformatics for Genome Analysis
          5323, Fall, Faculty of Agriculture, 2
        • From 01 Apr. 2022, To 31 Mar. 2023
          Seminar in Origin of Cultivated Plants1
          DB20, Year-long, Graduate School of Agriculture, 3
        • From 01 Apr. 2022, To 31 Mar. 2023
          Seminar in Origin of Cultivated Plants2
          DB21, Year-long, Graduate School of Agriculture, 3
        • From 01 Apr. 2022, To 31 Mar. 2023
          Experiments on Evolution of Cultivated Plants1
          DC20, Year-long, Graduate School of Agriculture, 6
        • From 01 Apr. 2022, To 31 Mar. 2023
          Practice of Basic Informatics (Faculty of Agriculture)
          T007, Fall, Institute for Liberal Arts and Sciences, 2
        • From 01 Apr. 2022, To 31 Mar. 2023
          Experiments on Evolution of Cultivated Plants2
          DC21, Year-long, Graduate School of Agriculture, 6
        • From Apr. 2021, To Mar. 2022
          Practice of Basic Informatics (Faculty of Agriculture)
          Fall, 全学共通科目
        • From Apr. 2021, To Mar. 2022
          Experiments on Evolution of Cultivated Plants1
          Year-long, 農学研究科
        • From Apr. 2021, To Mar. 2022
          Experiments on Evolution of Cultivated Plants2
          Year-long, 農学研究科
        • From Apr. 2021, To Mar. 2022
          Seminar in Origin of Cultivated Plants1
          Year-long, 農学研究科
        • From Apr. 2021, To Mar. 2022
          Seminar in Origin of Cultivated Plants2
          Year-long, 農学研究科

        Other educational achievements

        • IAEA RAS5094 Regional Training Course on Mutation Breeding and
          Molecular Technique for Crop Improvement from 22 April to 3 May 2024 at Kasetsart
          University, Bangkok, Thailand
        • FAO and IAEA joint training course:
          RER5024 – Enhancing Productivity and Resilience to Climate Change of Major Food Crops in Europe and Central Asia – Virtual Event – Regional Training Course on Molecular Techniques for Crop Improvement of Mutant Populations, 1 – 5 August 2022

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