Basic Information

Affiliated programs (koza)

• Graduate School of Science, 生物科学専攻 生体分子情報学講座, 助教

Professional Memberships

• Japanese society for bioinformatics
• アメリカ微生物学会(ASM)
• 国際微生物生態学会(ISME)
• 日本陸水学会
• 日本微生物生態学会

Academic Degree

• M.Sc(Kyoto University)
• Ph.D(Kyoto University)

Academic Resume (Graduate Schools)

• Kyoto University, 大学院理学研究科生物科学専攻修士課程, 修了
• Kyoto University, 大学院理学研究科生物科学専攻博士後期課程, 修了

Academic Resume (Undergraduate School/Majors)

• Kyoto University, 理学部理学科, 卒業

Research History

• From Apr. 2023, To Present

  Kyoto University, 創発PI
• From Dec. 2020, To Present

  Kyoto University, Institute for Chemical Research, 助教
• From Apr. 2018, To Nov. 2020

  日本学術振興会特別研究員（PD)
• From Apr. 2015, To Mar. 2018

  日本学術振興会特別研究員（DC1)
• From Apr. 2012, To Mar. 2015

  三菱総合研究所 研究員

ID,URL

• ORCID ID

  0000-0001-8770-2774

• J-Global ID

  201801012716341050

• Researcher number

  40823745

• External link

  https://yusukeokazaki.weebly.com/

Website(s) (URL(s))

• https://yusukeokazaki.weebly.com/

researchmap URL

• https://researchmap.jp/yokazaki

Research

Research Topics, Overview of the research

• Research Topics

  Microbial ecology in freshwater lakes
  
  

• Overview of the research

  My research has been focusing on microbial ecology in deep freshwater lakes. Using a combination of field (lake sampling), dry (meta-omics), and wet (cultivation and microscopy)-based approaches, I am trying to challenge broader research topics of microbiology, ecology, and life sciences in general.

Research Interests

• ウイルス
• 細菌
• メタゲノム
• 琵琶湖
• 陸水学
• 微生物生態学

Research Areas

• Life sciences, Genomics
• Life sciences, Evolutionary biology
• Life sciences, Ecology and environmental science
• Life sciences, Marine/Aquatic life sciences

Papers

• Genome-resolved year-round dynamics reveal a broad range of giant virus microdiversity

  Yue Fang; Lingjie Meng; Jun Xia; Yasuhiro Gotoh; Tetsuya Hayashi; Keizo Nagasaki; Hisashi Endo; Yusuke Okazaki; Hiroyuki Ogata

  mSystems, 26 Dec. 2024, Peer-reviewed

  
• Taxon-specific contributions of microeukaryotes to biological carbon pump in the Oyashio region

  Qingwei Yang; Yanhui Yang; Jun Xia; Hideki Fukuda; Yusuke Okazaki; Toshi Nagata; Hiroyuki Ogata; Hisashi Endo

  ISME Communications, 04 Nov. 2024, Peer-reviewed

  Access this paper :

  
• Contrasting defense strategies of oligotrophs and copiotrophs revealed by single-cell-resolved virus–host pairing of freshwater bacteria

  Yusuke Okazaki; Yohei Nishikawa; Ryota Wagatsuma; Haruko Takeyama; Shin-ichi Nakano

  BioRxiv, 24 Jul. 2024

  
• Spatiotemporal dynamics of giant viruses within a deep freshwater lake reveal a distinct dark-water community

  Liwen Zhang; Lingjie Meng; Yue Fang; Hiroyuki Ogata; Yusuke Okazaki

  The ISME Journal, 23 Sep. 2024, Peer-reviewed, Last author, Corresponding author

  Access this paper :

  
• Gene transfer among viruses substantially contributes to gene gain of giant viruses.

  Junyi Wu; Lingjie Meng; Morgan Gaïa; Hiroyuki Hikida; Yusuke Okazaki; Hisashi Endo; Hiroyuki Ogata

  Molecular biology and evolution, 02 Aug. 2024, Peer-reviewed

  
• Frontiers of lake microbial ecology opened up by new technologies.

  Yusuke Okazaki

  Japanese Journal of Limnology (Rikusuigaku Zasshi), Feb. 2024, Peer-reviewed, Invited, Lead author, Corresponding author

  
• DiGAlign: Versatile and Interactive Visualization of Sequence Alignment for Comparative Genomics

  Yosuke Nishimura; Kohei Yamada; Yusuke Okazaki; Hiroyuki Ogata

  Microbes and Environments, Mar. 2024, Peer-reviewed

  
• A 1.5-Mb continuous endogenous viral region in the arbuscular mycorrhizal fungus Rhizophagus irregularis

  Hongda Zhao; Ruixuan Zhang; Junyi Wu; Lingjie Meng; Yusuke Okazaki; Hiroyuki Hikida; Hiroyuki Ogata

  Virus Evolution, 2023, Peer-reviewed

  Access this paper :

  
• A rapid genome-wide analysis of isolated giant viruses using MinION sequencing.

  Hiroyuki Hikida; Yusuke Okazaki; Ruixuan Zhang; Thi Tuyen Nguyen; Hiroyuki Ogata

  Environmental microbiology, 05 Aug. 2023, Peer-reviewed

  
• Metagenomic analysis of ecological niche overlap and community collapse in microbiome dynamics

  Hiroaki Fujita; Masayuki Ushio; Kenta Suzuki; Masato S. Abe; Masato Yamamichi; Yusuke Okazaki; Alberto Canarini; Ibuki Hayashi; Keitaro Fukushima; Shinji Fukuda; E. Toby Kiers; Hirokazu Toju

  Frontiers in Microbiology, 15 Nov. 2023, Peer-reviewed

  
• Facilitative interaction networks in experimental microbial community dynamics

  Hiroaki Fujita; Masayuki Ushio; Kenta Suzuki; Masato S. Abe; Masato Yamamichi; Yusuke Okazaki; Alberto Canarini; Ibuki Hayashi; Keitaro Fukushima; Shinji Fukuda; E. Toby Kiers; Hirokazu Toju

  Frontiers in Microbiology, 11 Apr. 2023, Peer-reviewed

  
• A Fast and Easy Method to Co-extract DNA and RNA from an Environmental Microbial Sample

  Yusuke Okazaki; Tuyen Thi Nguyen; Arisa Nishihara; Hisashi Endo; Hiroyuki Ogata; Shin-ichi Nakano; Hideyuki Tamaki

  Microbes and Environments, 2023, Peer-reviewed, Lead author, Corresponding author

  
• Characterization of a bloom-associated alphaproteobacterial lineage, ‘Candidatus Phycosocius’: insights into freshwater algal-bacterial interactions

  Yuuhiko Tanabe; Haruyo Yamaguchi; Masaki Yoshida; Atsushi Kai; Yusuke Okazaki

  ISME Communications, 11 Mar. 2023, Peer-reviewed

  Access this paper :

  
• Long-Read-Resolved, Ecosystem-Wide Exploration of Nucleotide and Structural Microdiversity of Lake Bacterioplankton Genomes

  Yusuke Okazaki; Shin-ichi Nakano; Atsushi Toyoda; Hideyuki Tamaki

  mSystems, 08 Aug. 2022, Peer-reviewed, Lead author, Corresponding author

  Access this paper :

  
• Ecogenomics sheds light on diverse lifestyle strategies in freshwater CPR.

  Maria-Cecilia Chiriac; Paul-Adrian Bulzu; Adrian-Stefan Andrei; Yusuke Okazaki; Shin-Ichi Nakano; Markus Haber; Vinicius Silva Kavagutti; Paul Layoun; Rohit Ghai; Michaela M Salcher

  Microbiome, 04 Jun. 2022, Peer-reviewed

  
• Microdiversity and phylogeographic diversification of bacterioplankton in pelagic freshwater systems revealed through long-read amplicon sequencing

  Yusuke Okazaki; Shohei Fujinaga; Michaela M. Salcher; Cristiana Callieri; Atsushi Tanaka; Ayato Kohzu; Hideo Oyagi; Hideyuki Tamaki; Shin-ichi Nakano

  Microbiome, Jan. 2021, Peer-reviewed, Lead author, Corresponding author

  Access this paper :

  
• Long-read metagenomics using PromethION uncovers oral bacteriophages and their interaction with host bacteria

  Koji Yahara; Masato Suzuki; Aki Hirabayashi; Wataru Suda; Masahira Hattori; Yutaka Suzuki; Yusuke Okazaki

  Nature Communications, Jan. 2021, Peer-reviewed, Last author

  
• Describing macroecological patterns in microbes: Approaches for comparative analyses of operational taxonomic unit read number distribution with a case study of global oceanic bacteria

  Ryosuke Nakadai; Yusuke Okazaki; Shunsuke Matsuoka

  Environmental DNA, Oct. 2020, Peer-reviewed

  
• Genome‐resolved viral and cellular metagenomes revealed potential key virus‐host interactions in a deep freshwater lake

  Yusuke Okazaki; Yosuke Nishimura; Takashi Yoshida; Hiroyuki Ogata; Shin‐ichi Nakano

  Environmental Microbiology, Dec. 2019, Peer-reviewed, Lead author, Corresponding author

  
• Metaepigenomic analysis reveals the unexplored diversity of DNA methylation in an environmental prokaryotic community.

  Satoshi Hiraoka; Yusuke Okazaki; Mizue Anda; Atsushi Toyoda; Shin-Ichi Nakano; Wataru Iwasaki

  Nature communications, 11 Jan. 2019, Peer-reviewed

  Access this paper :

  
• Widespread Dominance of Kinetoplastids and Unexpected Presence of Diplonemids in Deep Freshwater Lakes.

  Mukherjee I; Hodoki Y; Okazaki Y; Fujinaga S; Ohbayashi K; Nakano SI

  Frontiers in microbiology, 2019, Peer-reviewed

  
• The Broad Habitat Spectrum of the CL500-11 Lineage (Phylum Chloroflexi), a Dominant Bacterioplankton in Oxygenated Hypolimnia of Deep Freshwater Lakes

  Yusuke Okazaki; Michaela M. Salcher; Cristiana Callieri; Shin-ichi Nakano

  Frontiers in Microbiology, 27 Nov. 2018, Peer-reviewed, Lead author, Corresponding author

  
• Hidden in plain sight-highly abundant and diverse planktonic freshwater Chloroflexi.

  Mehrshad M; Salcher MM; Okazaki Y; Nakano SI; Šimek K; Andrei AS; Ghai R

  Microbiome, Oct. 2018, Peer-reviewed

  
• Distributions and geochemical behaviors of oxyanion-forming trace elements and uranium in the Hövsgöl–Baikal–Yenisei water system of Mongolia and Russia

  Akihito Mochizuki; Takahiro Murata; Ko Hosoda; Toshiya Katano; Yuji Tanaka; Tetsuro Mimura; Osamu Mitamura; Shin ichi Nakano; Yusuke Okazaki; Yuko Sugiyama; Yasuhiro Satoh; Yasunori Watanabe; Ayuriin Dulmaa; Chananbaatar Ayushsuren; Darmaa Ganchimeg; Valentin V. Drucker; Vladimir A. Fialkov; Masahito Sugiyama

  Journal of Geochemical Exploration, May 2018, Peer-reviewed

  
• Ubiquity and quantitative significance of bacterioplankton lineages inhabiting the oxygenated hypolimnion of deep freshwater lakes

  Yusuke Okazaki; Shohei Fujinaga; Atsushi Tanaka; Ayato Kohzu; Hideo Oyagi; Shin-ichi Nakano

  ISME JOURNAL, Oct. 2017, Peer-reviewed, Lead author, Corresponding author

  
• Vertical partitioning of freshwater bacterioplankton community in a deep mesotrophic lake with a fully oxygenated hypolimnion (Lake Biwa, Japan)

  Yusuke Okazaki; Shin-Ichi Nakano

  ENVIRONMENTAL MICROBIOLOGY REPORTS, Oct. 2016, Peer-reviewed, Lead author, Corresponding author

  
• A novel alphaproteobacterial ectosymbiont promotes the growth of the hydrocarbon-rich green alga Botryococcus braunii

  Yuuhiko Tanabe; Yusuke Okazaki; Masaki Yoshida; Hiroshi Matsuura; Atsushi Kai; Takashi Shiratori; Ken-ichiro Ishida; Shin-ichi Nakano; Makoto M. Watanabe

  SCIENTIFIC REPORTS, Jul. 2015, Peer-reviewed

  Access this paper :

  
• Seasonal dominance of CL500-11 bacterioplankton (phylum Chloroflexi) in the oxygenated hypolimnion of Lake Biwa, Japan

  Yusuke Okazaki; Yoshikuni Hodoki; Shin-ichi Nakano

  FEMS MICROBIOLOGY ECOLOGY, Jan. 2013, Peer-reviewed, Lead author

  Access this paper :

  

Misc.

• 世界の湖の好気的深水層で優占するCL500-11細菌

  岡嵜 友輔

  日本微生物生態学会誌, 01 Mar. 2025

  
• パンドラウイルスにおける大きなゲノム断片の水平伝播

  疋田弘之; ZHANG Ruixuan; CHEN Jingjie; 岡嵜友輔; 緒方博之

  日本微生物生態学会大会(Web), 2024

  
• 夏季成層期におけるイシク・クル湖の微生物相

  程木義邦; 中野伸一; MUKHERJEE Indranil; 岡崎友輔; 齋藤圭; 大久保賢治; SATYLKANOV Rysbek; 朴紫暎; 杉山雅人

  日本陸水学会大会講演要旨集, 2018

  
• Genomic analysis of a giant virus using only nanopore sequencing data

  疋田弘之; 岡崎友輔; 緒方博之

  日本分子生物学会年会プログラム・要旨集(Web), 2021

  
• 大水深淡水湖のユニークな微生物生態系

  岡崎友輔

  海洋化学研究, Apr. 2022, Lead author

  
• 湖沼の微生物生態系が教えてくれること

  岡﨑 友輔

  日本微生物生態学会誌, 2021

  
• 一杯の湖水に秘められた難題

  岡崎友輔

  生物工学会誌, Nov. 2020, Lead author

  
• ネオウイルス学に出会うまで

  岡崎友輔

  ネオウイルス学ニュースレター, Nov. 2019, Lead author

  
• 琵琶湖堆積物からの過去100年のウイルス叢復元の試み

  本庄三恵; 槻木玲美; 加三千宣; 岡崎友輔; 木村成子; 吉田天士; 左子芳彦; 工藤洋

  日本生態学会大会講演要旨(Web), 2019

  
• メタゲノム解析でひも解く淡水湖のファージの多様性と生態

  岡崎友輔; 西村陽介; 吉田天士; 緒方博之; 中野伸一

  日本微生物生態学会大会(Web), 2019

  
• Comment from award winner at 8th JSPS IKUSHI PRIZE

  岡崎 友輔

  陸水学雑誌 = Japanese journal of limnology, May 2018

  
• Metagenomics of prokaryotes and viruses in pelagic Lake Biwa

  岡崎 友輔

  京都大学化学研究所スーパーコンピュータシステム研究成果報告書, 2017

  
• P-19 Effects of surface planktonic production on bacterial abundance, composition and activity in hypolimnion of Lake Biwa(Poster Session)

  OKAZAKI YUSUKE; NAKANO SHIN-ICHI

  日本微生物生態学会講演要旨集, 2010

  

Presentations

• Unraveling genomic diversification in lake bacterioplankton through high-resolution eco-genomics

  Yusuke Okazaki

  The 19th International Symposium on River and Lake Environment, Nov. 2024, Invited

  
• シングルセルゲノム解析を用いた環境ウイルスの宿主同定と感染率評価

  岡崎友輔

  第37回日本微生物生態学会大会, Oct. 2024, Invited

  
• 深水層の微生物生態系に迫る新技術の進撃

  岡崎友輔

  日本陸水学会第88回大会, Oct. 2024

  
• Low Infection Rate and Heterogeneous Virus-Host Interaction Among Freshwater Bacteria Revealed at the Single-Cell Resolution

  Okazaki Y; Nishikawa Y; Wagatsuma R; Takeyama H; Nakano S

  Viruses of Microbes meeting 2024, Jul. 2024

  
• 大水深淡水湖を対象とした微生物網羅的環境ゲノムデータベースの構築

  岡崎友輔; 大八木英夫; 程木義邦; 知北和久; 齋藤圭; 中野伸一

  日本陸水学会 第87回大会, Oct. 2023

  
• High-resolution microbial eco-genomics in deep freshwater lakes

  Yusuke Okazaki

  13th Asian Symposium on Microbial Ecology, 30 Nov. 2023, Invited

  
• Single-cell genomics uncovers microbial genomic microdiversity and virus-host interactions that had eluded high-resolution metagenomics

  Okazaki Y; Nishikawa Y; Wagatsuma R; Takeyama H; Nakano S

  The Local Pangenome workshop, Oct. 2023

  
• Single cell genomics uncovered uncultured virus-host links in a deep freshwater lake

  Okazaki Y; Nishikawa Y; Wagatsuma R; Takeyama H; Nakano S

  Symposium of Aquatic Microbial Ecology (SAME17), Aug. 2023

  
• “湖の微生物生態系”を対象としたゲノム・多型・遺伝子発現の網羅的比較解析

  岡崎友輔; 中野 伸一; 豊田 敦; 玉木 秀幸

  日本微生物生態学会第35回大会, 01 Nov. 2022

  
• 湖沼深⽔層の細菌の⽣態学

  岡崎友輔; 中野伸一

  日本陸水学会第86回大会, Sep. 2022

  
• Long-read-resolved, ecosystem-wide exploration of nucleotide and structural microdiversity of lake bacterioplankton genomes

  Yusuke Okazaki; Shin-ichi Nakano; Atsushi Toyoda; Hideyuki Tamaki

  18th International Symposium on Microbial Ecology, Aug. 2022

  
• Long- and short-read-resolved microdiversity of lake bacterioplankton genomes

  Yusuke Okazaki

  METAGENOMICS FORUM, Apr. 2022, Invited

  
• ロングリード解析で拓くメタゲノムビニングの限界と環境細菌ゲノムの微小多様性

  岡崎友輔; 中野伸一; 豊田敦; 玉木秀幸

  微生物生態学会第34回大会, Oct. 2021

  
• ロングリードメタゲノム解析で拓く環境微生物の多様性

  岡崎友輔

  大隅基礎科学創成財団 微生物コンソーシアム, Oct. 2021, Invited

  
• 湖内および湖間の細菌のゲノム多様性の解明

  岡崎友輔; 藤永承平; 田中敦; 高津文人; 大八木英夫; 中野伸一

  日本陸水学会第85回大会, Sep. 2021

  
• Ecogenomics of bacteria and viruses in the water column of Lake Biwa

  Yusuke Okazaki

  35th Congress of the International Society of Limnology, Aug. 2021

  
• 大水深淡水湖のユニークな微生物生態系

  岡崎友輔

  京都化学者クラブ 第374 回例会, Aug. 2021, Invited

  
• ロングリードアンプリコンシーケンスで紐解く湖沼細菌の系統内多様性

  岡崎友輔

  2021 PacBio Japan Virtual User Group Meeting, May 2021, Invited

  

Awards

• 18 Sep. 2022

  The Japanese society of limnology, The 24th Shinkichi Yoshimura Award
• Mar. 2018

  JSPS, Ikushi Prize

Media Coverage

• ゲノムから地球規模の循環まで。湖に棲む微生物を多角的に探究する。「環境微生物・ウイルスのドライな謎にウェットに迫る」

  K.U. RESEARCH, https://research.kyoto-u.ac.jp/documentary/d040/, Sep. 2022, Internet

  
• Exposing the Bacterial Enigma of the Lake - Microbial Ecologist Yusuke OKAZAKI

  NHK World, Science View, Jul. 2023, Media report

  

External funds: Kakenhi

• Who is the host of uncultivated viruses? Linking viral and bacterial genomes in the environment

  Grant-in-Aid for Early-Career Scientists

  Basic Section 45040:Ecology and environment-related

  Kyoto University

  岡崎 友輔

  From 01 Apr. 2022, To 31 Mar. 2025, Granted

  微生物生態学;琵琶湖;ウイルス;細菌;シングルセルゲノム解析;メタゲノム

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-22K15182/
• Elucidating the molecular heterogeneity of dissolved organic matter that governs its long-term persistence

  Grant-in-Aid for Scientific Research (B)

  Basic Section 63010:Environmental dynamic analysis-related

  Kobe University

  木田 森丸

  From 01 Apr. 2022, To 31 Mar. 2025, Granted

  溶存有機物;長期残存性;微生物;分子多様性;低分子

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-22H03733/
• Molecular ecological mechanism of bloom disintegration by viral infection

  Grant-in-Aid for Scientific Research (A)

  Medium-sized Section 40:Forestry and forest products science, applied aquatic science, and related fields

  Kochi University

  長崎 慶三

  From 01 Apr. 2022, To 31 Mar. 2027, Granted

  赤潮プランクトン;ウイルス;糖鎖認識機構;巨大蛋白質;長鎖反復配列;赤潮;二本鎖DNAウイルスHaV;特異的感染性;感受性;クローン多様性;生え戻り現象;高度アミノ酸反復領域;長鎖反復アミノ酸長鎖配列;糖鎖;宿主特異性

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-22H00385/
• Ecology of giant viruses inhabiting the aphotic zone of the sea

  Grant-in-Aid for Scientific Research (A)

  Medium-sized Section 40:Forestry and forest products science, applied aquatic science, and related fields

  Kyoto University

  緒方 博之

  From 01 Apr. 2022, To 31 Mar. 2026, Granted

  巨大ウイルス;無光層;生態;進化

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-22H00384/
• Unveiling the organic matter dynamics functioning in lake hypolimnion

  Grant-in-Aid for Scientific Research (A)

  Medium-sized Section 40:Forestry and forest products science, applied aquatic science, and related fields

  Kyoto University

  中野 伸一

  From 01 Apr. 2022, To 31 Mar. 2026, Granted

  湖沼深水層;有機物動態;高分子溶存有機物;沈降粒子;微生物ループ

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-22H00382/
• Microbial Nitrogen Pump: Bacterial semi-labile dissolved organic nitrogen as a nutrient transport pathway in aquatic systems

  Grant-in-Aid for Scientific Research (B)

  Basic Section 63010:Environmental dynamic analysis-related

  Lake Biwa Environmental Research Institute

  山口 保彦

  From 01 Apr. 2021, To 31 Mar. 2024, Granted

  溶存有機物;窒素循環;アミノ酸;細菌;窒素同位体

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-21H03584/
• Research on microbial loop unique to lake hypolimnion

  Grant-in-Aid for Challenging Research (Exploratory)

  Kyoto University

  Shin-ichi Nakano

  From 30 Jun. 2017, To 31 Mar. 2019, Project Closed

  湖沼;深水層;微生物ループ;CL500-11細菌;キネトプラスチド鞭毛虫;ピコ植物プランクトン;微生物群集組成;細菌;原生生物;鞭毛虫;湖沼深水層;群集ゲノム解析;食物連鎖

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-17K19289/
• Exploring the potential of bacteria-derived submicron particles to drive biological pumps

  Grant-in-Aid for Scientific Research (B)

  Basic Section 63010:Environmental dynamic analysis-related

  Lake Biwa Environmental Research Institute

  山口 保彦

  From 01 Apr. 2024, To 31 Mar. 2027, Granted

  有機物動態;D-アミノ酸;窒素循環;微生物;琵琶湖

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-24K03078/
• Elucidating the molecular heterogeneity of dissolved organic matter that governs its long-term persistence

  Grant-in-Aid for Scientific Research (B)

  Basic Section 63010:Environmental dynamic analysis-related

  Kobe University

  木田 森丸

  From 01 Apr. 2022, To 31 Mar. 2025, Granted

  溶存有機物;微生物;複雑多様性;琵琶湖;FT-ICR MS;長期残存性;分子多様性;低分子

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-23K24987/

External funds: others

• Developing a high-resolution eco-genomics platform through inter-lake comparisons

  Japan science and technology agency, JST FOREST program

  From 01 Apr. 2023, To 31 Mar. 2030

  Yusuke Okazaki
• 先端的環境ゲノム解析で迫る原核生物の種内ゲノム多様化の謎

  京都大学教育研究振興財団 令和3年度 研究活動推進助成

  From 01 Jul. 2021, To 31 Mar. 2022

  岡崎友輔
• 環境微生物・ウイルスのドライな謎にウェットに迫る

  京都大学創立 125 周年記念ファンド【くすのき・125】

  From 13 Sep. 2021, To 31 Mar. 2025

  岡崎友輔

Education

Teaching subject(s)

• From 01 Apr. 2024, To 31 Mar. 2025

  Research Proposal Writing Practice B

  8403, Year-long, Graduate School of Pharmaceutical Sciences, 1
• From 01 Apr. 2024, To 31 Mar. 2025

  Research Proposal Writing Practice A

  8402, Year-long, Graduate School of Pharmaceutical Sciences, 1
• From 01 Apr. 2024, To 31 Mar. 2025

  Pharmaceutical Laboratory Coaching Practice A

  8301, Year-long, Graduate School of Pharmaceutical Sciences, 1
• From 01 Apr. 2024, To 31 Mar. 2025

  Seminar on Bioinformatics IID

  9068, Fall, Graduate School of Science, 1
• From 01 Apr. 2024, To 31 Mar. 2025

  Seminar on Bioinformatics IIC

  9067, Spring, Graduate School of Science, 1
• From 01 Apr. 2024, To 31 Mar. 2025

  Seminar on Bioinformatics IIB

  9066, Fall, Graduate School of Science, 1
• From 01 Apr. 2024, To 31 Mar. 2025

  Seminar on Bioinformatics IB

  9062, Fall, Graduate School of Science, 1
• From 01 Apr. 2024, To 31 Mar. 2025

  Seminar on Bioinformatics IA

  9061, Spring, Graduate School of Science, 1
• From 01 Apr. 2024, To 31 Mar. 2025

  Seminar on Bioinformatics IIA

  9065, Spring, Graduate School of Science, 1
• From 01 Apr. 2024, To 31 Mar. 2025

  Seminar on Bioinformatics ID

  9064, Fall, Graduate School of Science, 1
• From 01 Apr. 2024, To 31 Mar. 2025

  Seminar on Bioinformatics IC

  9063, Spring, Graduate School of Science, 1
• From 01 Apr. 2024, To 31 Mar. 2025

  Bioinformatics

  3768, Spring, Faculty of Science, 2
• From 01 Apr. 2024, To 31 Mar. 2025

  Bioinformatics

  9136, Spring, Graduate School of Science, 2
• From 01 Apr. 2024, To 31 Mar. 2025

  Advanced Course on Biological Science B

  9012, Fall, Graduate School of Science, 2
• From 01 Apr. 2024, To 31 Mar. 2025

  Genome Informatics

  C408, Spring, Faculty of Pharmaceutical Sciences, 2
• From 01 Apr. 2024, To 31 Mar. 2025

  Medicinal Frontier Science Research C

  8408, Year-long, Graduate School of Pharmaceutical Sciences, 4
• From 01 Apr. 2024, To 31 Mar. 2025

  Medicinal Frontier Science Research B

  8407, Year-long, Graduate School of Pharmaceutical Sciences, 4
• From 01 Apr. 2024, To 31 Mar. 2025

  Medicinal Frontier Science Research A

  8406, Year-long, Graduate School of Pharmaceutical Sciences, 4
• From 01 Apr. 2024, To 31 Mar. 2025

  Seminar on Critical Reading of Scientific Papers A

  8404, Year-long, Graduate School of Pharmaceutical Sciences, 2
• From 01 Apr. 2024, To 31 Mar. 2025

  Bioinformatics I: Target Discovery

  1113, Fall, Graduate School of Pharmaceutical Sciences, 2
• From 01 Apr. 2024, To 31 Mar. 2025

  Seminar on Critical Reading of Scientific Papers B

  8405, Year-long, Graduate School of Pharmaceutical Sciences, 2
• From 01 Apr. 2023, To 31 Mar. 2024

  Fundamental Chemical Experiments

  N308, Spring, Institute for Liberal Arts and Sciences, 2
• From 01 Apr. 2023, To 31 Mar. 2024

  Research Proposal Writing Practice A

  8402, Year-long, Graduate School of Pharmaceutical Sciences, 1
• From 01 Apr. 2023, To 31 Mar. 2024

  Pharmaceutical Laboratory Coaching Practice A

  8301, Year-long, Graduate School of Pharmaceutical Sciences, 1
• From 01 Apr. 2023, To 31 Mar. 2024

  Advanced Bioinformatics for Drug Discovery

  8207, Fall, Graduate School of Pharmaceutical Sciences, 1
• From 01 Apr. 2023, To 31 Mar. 2024

  Research Proposal Writing Practice B

  8403, Year-long, Graduate School of Pharmaceutical Sciences, 1
• From 01 Apr. 2023, To 31 Mar. 2024

  Seminar on Bioinformatics IB

  9062, Fall, Graduate School of Science, 1
• From 01 Apr. 2023, To 31 Mar. 2024

  Seminar on Bioinformatics IA

  9061, Spring, Graduate School of Science, 1
• From 01 Apr. 2023, To 31 Mar. 2024

  Seminar on Bioinformatics IIA

  9065, Spring, Graduate School of Science, 1
• From 01 Apr. 2023, To 31 Mar. 2024

  Seminar on Bioinformatics ID

  9064, Fall, Graduate School of Science, 1
• From 01 Apr. 2023, To 31 Mar. 2024

  Seminar on Bioinformatics IC

  9063, Spring, Graduate School of Science, 1
• From 01 Apr. 2023, To 31 Mar. 2024

  Seminar on Bioinformatics IIB

  9066, Fall, Graduate School of Science, 1
• From 01 Apr. 2023, To 31 Mar. 2024

  Seminar on Bioinformatics IID

  9068, Fall, Graduate School of Science, 1
• From 01 Apr. 2023, To 31 Mar. 2024

  Seminar on Bioinformatics IIC

  9067, Spring, Graduate School of Science, 1
• From 01 Apr. 2023, To 31 Mar. 2024

  Bioinformatics :Advanced Course

  9137, Fall, Graduate School of Science, 2
• From 01 Apr. 2023, To 31 Mar. 2024

  Bioinformatics

  9136, Spring, Graduate School of Science, 2
• From 01 Apr. 2023, To 31 Mar. 2024

  Advanced Course on Biological Science B

  9012, Fall, Graduate School of Science, 2
• From 01 Apr. 2023, To 31 Mar. 2024

  Bioinformatics

  3768, Spring, Faculty of Science, 2
• From 01 Apr. 2023, To 31 Mar. 2024

  Skill Development for Bioinformatics

  5001, Year-long, Graduate School of Pharmaceutical Sciences, 4
• From 01 Apr. 2023, To 31 Mar. 2024

  Medicinal Frontier Science Research A

  8406, Year-long, Graduate School of Pharmaceutical Sciences, 4
• From 01 Apr. 2023, To 31 Mar. 2024

  Medicinal Frontier Science Research B

  8407, Year-long, Graduate School of Pharmaceutical Sciences, 4
• From 01 Apr. 2023, To 31 Mar. 2024

  Genome Informatics

  C408, Spring, Faculty of Pharmaceutical Sciences, 2
• From 01 Apr. 2023, To 31 Mar. 2024

  Bioinformatics I: Target Discovery

  1113, Fall, Graduate School of Pharmaceutical Sciences, 2
• From 01 Apr. 2023, To 31 Mar. 2024

  Seminar on Critical Reading of Scientific Papers A

  8404, Year-long, Graduate School of Pharmaceutical Sciences, 2
• From 01 Apr. 2023, To 31 Mar. 2024

  Seminar on Critical Reading of Scientific Papers B

  8405, Year-long, Graduate School of Pharmaceutical Sciences, 2
• From 01 Apr. 2022, To 31 Mar. 2023

  Seminar on Critical Reading of Scientific Papers A

  8404, Year-long, Graduate School of Pharmaceutical Sciences, 2
• From 01 Apr. 2022, To 31 Mar. 2023

  Seminar on Bioinformatics IB

  9062, Fall, Graduate School of Science, 1
• From 01 Apr. 2022, To 31 Mar. 2023

  Skill Development for Bioinformatics

  5001, Year-long, Graduate School of Pharmaceutical Sciences, 4
• From 01 Apr. 2022, To 31 Mar. 2023

  Advanced Course on Biological Science B

  9012, Fall, Graduate School of Science, 2
• From 01 Apr. 2022, To 31 Mar. 2023

  Pharmaceutical Laboratory Coaching Practice A

  8301, Year-long, Graduate School of Pharmaceutical Sciences, 1
• From 01 Apr. 2022, To 31 Mar. 2023

  Seminar on Bioinformatics IC

  9063, Spring, Graduate School of Science, 1
• From 01 Apr. 2022, To 31 Mar. 2023

  Seminar on Bioinformatics IIB

  9066, Fall, Graduate School of Science, 1
• From 01 Apr. 2022, To 31 Mar. 2023

  Seminar on Bioinformatics IIA

  9065, Spring, Graduate School of Science, 1
• From 01 Apr. 2022, To 31 Mar. 2023

  Bioinformatics

  3768, Spring, Faculty of Science, 2
• From 01 Apr. 2022, To 31 Mar. 2023

  Seminar on Bioinformatics IA

  9061, Spring, Graduate School of Science, 1
• From 01 Apr. 2022, To 31 Mar. 2023

  Seminar on Bioinformatics IID

  9068, Fall, Graduate School of Science, 1
• From 01 Apr. 2022, To 31 Mar. 2023

  Seminar on Bioinformatics IIC

  9067, Spring, Graduate School of Science, 1
• From 01 Apr. 2022, To 31 Mar. 2023

  Research Proposal Writing Practice A

  8402, Year-long, Graduate School of Pharmaceutical Sciences, 1
• From 01 Apr. 2022, To 31 Mar. 2023

  Medical Frontier Science Research A

  8406, Year-long, Graduate School of Pharmaceutical Sciences, 4
• From 01 Apr. 2022, To 31 Mar. 2023

  Bioinformatics

  9136, Spring, Graduate School of Science, 2
• From 01 Apr. 2022, To 31 Mar. 2023

  Seminar on Bioinformatics ID

  9064, Fall, Graduate School of Science, 1
• From Apr. 2021, To Mar. 2022

  Bioinformatics

  Spring, 理学研究科
• From Apr. 2021, To Mar. 2022

  Bioinformatics

  Spring, 理学部
• From Apr. 2021, To Mar. 2022

  Seminar on Bioinformatics IA

  Spring, 理学研究科
• From Apr. 2021, To Mar. 2022

  Seminar on Bioinformatics IB

  Fall, 理学研究科
• From Apr. 2021, To Mar. 2022

  Seminar on Bioinformatics IC

  Spring, 理学研究科
• From Apr. 2021, To Mar. 2022

  Seminar on Bioinformatics ID

  Fall, 理学研究科
• From Apr. 2021, To Mar. 2022

  Seminar on Bioinformatics IIA

  Spring, 理学研究科
• From Apr. 2021, To Mar. 2022

  Seminar on Bioinformatics IIB

  Fall, 理学研究科
• From Apr. 2021, To Mar. 2022

  Seminar on Bioinformatics IIC

  Spring, 理学研究科
• From Apr. 2021, To Mar. 2022

  Seminar on Bioinformatics IID

  Fall, 理学研究科
• From Apr. 2021, To Mar. 2022

  Skill Development for Bioinformatics

  Year-long, 薬学研究科
• From Apr. 2021, To Mar. 2022

  Bioinformatics :Advanced Course

  Fall, 理学研究科
• From Apr. 2021, To Mar. 2022

  Bioinformatics I: Target Discovery

  Fall, 薬学研究科

Part-time lecturer

• From 01 Apr. 2024, To 30 Sep. 2024

  バイオインフォマティクス

  週2時間　合計6時間 , 京都大学, 理学部
• From 01 Apr. 2023, To 30 Sep. 2023

  バイオインフォマティクス

  週2時間　合計6時間, 京都大学, 理学部
• From 01 Apr. 2022, To 30 Sep. 2022

  バイオインフォマティクス

  期間内120時間, 理学部

Administration

Faculty management (title, position)

• From 01 Apr. 2021, To 31 Mar. 2022

  化学研究所広報委員会委員

Academic, Social Contribution

Committee Memberships

• From Apr. 2025, To Mar. 2027

  Councilor of Japanese Society of Microbial Ecology
• From Jan. 2025, To Dec. 2026

  Limnology Associate Editor
• From Jan. 2023, To Dec. 2024

  Working group for future planning, Japanese society of limnology
• From Feb. 2022, To Dec. 2025

  Planning committee, Japanese society of limnology