Basic Information

Affiliated programs (koza)

• Graduate School of Science, 生物科学 生物物理学, 教授

Professional Memberships

• Society of Mathematical Biology
• 日本分子生物学会
• 動物学会
• 日本生物物理学会
• 日本発生生物学会
• 数理生物学会
• Society of Mathematical Biology

Academic Degree

• 修士（理学）(九州大学)
• 博士（理学）(九州大学)

Academic Resume (Graduate Schools)

• 九州大学, 大学院理学研究科修士課程生物科学専攻, 修了
• 九州大学, 大学院理学研究科博士後期課程生物科学専攻, 修了

Academic Resume (Undergraduate School/Majors)

• 京都大学, 理学部理学科, 卒業

Research History

• From Apr. 2018, To Present

  Kyoto University, Institute for Frontier Life and Medical Sciences, Professor
• From Aug. 2008, To Mar. 2020

  RIKEN, Theoretical Biology Laboratory, Chief Scientist
• From Sep. 2002, To Jun. 2008

  National Institute for Basic Biology, Division of Theoretical Biology, Associate Professor
• From Jul. 1998, To Aug. 2002

  Kyushu University, Faculty of Sciences Department of Biology, Assistant Professor
• From Apr. 1998, To Jun. 1998

  Kyushu University, JSPS Fellow

Profile

• Profile

  Atsushi Mochizuki graduated from the Faculty of Sciences, Kyoto University, in 1994, and obtained his PhD in 1999 from Kyushu University. He was promoted to assistant professor in 1998 at Kyushu University, to associate professor in 2002 at National Institute for Basic Biology, to chief scientist in 2008, and to professor in 2018 at Kyoto University. His researches focus on the mathematical and computational studies on biological phenomena in molecular and developmental biology. One of his largest achievements is to establish "Structural Theories for Network Systems", by which important aspects of dynamical properties of complex systems are determined from topologies of networks alone. He was awarded 11th JSPS PRIZE (2015) from Japan Society for the Promotion of Science.

Language of Instruction

• Japanese
• English

ID,URL

• ORCID ID

  0000-0002-7714-1755

• J-Global ID

  200901025503069114

• Researcher ID

  A-7917-2015

• External link

  https://mathbio.infront.kyoto-u.ac.jp/en/

researchmap URL

• https://researchmap.jp/atsushi_mochi

Research

Research Topics, Overview of the research

• Research Topics

  Mathematical and computational studies for biological phenomena.

• Overview of the research

  I have studied many biological phenomena at molecular or cellular levels using mathematical methods. My research topics include dynamics of gene regulatory networks, chemical reaction networks, pattern formations in development, and some evolutional modelings. My recent major achievements are developing "structural theories for network systems", by which important aspects of dynamical properties of complex systems are determined from topologies of the networks alone. I have promoted many collaboration projects with experimental biologists to obtain fundamental understanding for the mechanisms governing real biological systems.

Research Interests

• Structural Theories
• Pattern Formation
• Model-Free
• Mathematical Model
• Dynamics
• Reaction Network
• Regulatory Network
• 数理生物学
• Mathematical Biology

Research Areas

• Life sciences, Cell biology
• Life sciences, Molecular biology
• Life sciences, Developmental biology
• Life sciences, Biophysics

Papers

• Network topology creates independent control of G2-M from G1-S checkpoints in the fission yeast cell cycle system

  Yuhei Yamauchi; Hironori Sugiyama; Yuhei Goto; Kazuhiro Aoki; Atsushi Mochizuki

  13 Mar. 2025

  
• 2C1510 Analysis of the internal dynamics for pattern formation in multi cellular cyanobacteria by CA model(Mathematical Biology,Oral Presentation,The 50th Annual Meeting of the Biophysical Society of Japan)

  Ishihara Jun-ichi; Tachikawa Masashi; Iwasaki Hideo; Mochizuki Atsushi

  Seibutsu Butsuri, 2012

  
• Flux-augmented bifurcation analysis in chemical reaction network systems

  Takashi Okada; Atsushi Mochizuki; Mikio Furuta; Je-Chiang Tsai

  Physical Review E, 01 Jun. 2021

  
• Finding regulatory modules of chemical reaction systems

  Yuhei Yamauchi; Atsuki Hishida; Takashi Okada; Atsushi Mochizuki

  16 Oct. 2023

  
• 細胞形態形成の分子メカニズム 低浸透圧によるカベオラのエンドサイトーシスと細胞の表面積の調節

  千住 洋介; 立川 正志; 望月 敦史; 末次 志郎

  日本生化学会大会プログラム・講演要旨集, Dec. 2012

  
• Position of meristems and the angles of the cell division plane regulate the uniqueness of lateral organ shape.

  Ayaka Kinoshita; Makiko Naito; Zining Wang; Yasuhiro Inoue; Atsushi Mochizuki; Hirokazu Tsukaya

  Development (Cambridge, England), 14 Nov. 2022

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• Mathematical Understanding for the Molecular Mechanism of Cyanobacterial Circadian Rhythms

  IMAMURA TAKIGAWA Hisako; MOCHIZUKI Atsushi

  Seibutsu Butsuri, 25 Jul. 2008

  
• 1P299 Predicting molecular regulation of circadian rhythm of cyanobacteria using mathematical models(Mathematical biology, biological rythms, and non-equilibrium phenomena,Oral Presentations)

  Imamura-Takigawa Hisako; Mochizuki Atsushi

  Seibutsu Butsuri, 2007

  
• mathematical study on formation of conc mosaic in the medaka

  Tohya S.; Mochizuki A.; Iwasa Y.

  Seibutsu Butsuri, 1999

  
• The gene regulatory system for specifying germ layers in early embryos of the simple chordate

  Miki Tokuoka; Kazuki Maeda; Kenji Kobayashi; Atsushi Mochizuki; Yutaka Satou

  Science Advances, Jun. 2021

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• Using linkage logic theory to control dynamics of a gene regulatory network of a chordate embryo.

  Kenji Kobayashi; Kazuki Maeda; Miki Tokuoka; Atsushi Mochizuki; Yutaka Satou

  Scientific reports, 17 Feb. 2021

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• Author Correction: Pyrophosphate inhibits gluconeogenesis by restricting UDP-glucose formation in vivo (Scientific Reports, (2018), 8, 1, (14696), 10.1038/s41598-018-32894-1)

  Ali Ferjani; Kensuke Kawade; Mariko Asaoka; Akira Oikawa; Takashi Okada; Atsushi Mochizuki; Masayoshi Maeshima; Masami Yokota Hirai; Kazuki Saito; Hirokazu Tsukaya

  Scientific Reports, 01 Dec. 2019, Peer-reviewed

  
• A Rho-based reaction-diffusion system governs cell wall patterning in metaxylem vessels

  Yoshinobu Nagashima; Satoru Tsugawa; Atsushi Mochizuki; Takema Sasaki; Hiroo Fukuda; Yoshihisa Oda

  Scientific Reports, 01 Dec. 2018, Peer-reviewed

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• Pyrophosphate inhibits gluconeogenesis by restricting UDP-glucose formation in vivo

  Ali Ferjani; Kensuke Kawade; Mariko Asaoka; Akira Oikawa; Takashi Okada; Atsushi Mochizuki; Masayoshi Maeshima; Masami Yokota Hirai; Kazuki Saito; Hirokazu Tsukaya

  Scientific Reports, 01 Dec. 2018, Peer-reviewed

  
• Caspases and matrix metalloproteases facilitate collective behavior of non-neural ectoderm after hindbrain neuropore closure

  Naomi Shinotsuka; Yoshifumi Yamaguchi; Kenichi Nakazato; Yudai Matsumoto; Atsushi Mochizuki; Masayuki Miura

  BMC Developmental Biology, 31 Jul. 2018, Peer-reviewed

  
• Structural bifurcation analysis in chemical reaction networks

  Okada Takashi; Tsai Je-Chiang; Mochizuki Atsushi

  PHYSICAL REVIEW E, 30 Jul. 2018, Peer-reviewed

  
• Structural bifurcation analysis in chemical reaction networks

  Takashi Okada; Je Chiang Tsai; Atsushi Mochizuki

  Physical Review E, 30 Jul. 2018, Peer-reviewed

  
• Controlling Cell Fate Specification System by Key Genes Determined from Network Structure

  Kenji Kobayashi; Kazuki Maeda; Miki Tokuoka; Atsushi Mochizuki; Yutaka Satou

  iScience, 29 Jun. 2018, Peer-reviewed

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• Modeling the functions of condensin in chromosome shaping and segregation

  Yuji Sakai; Atsushi Mochizuki; Kazuhisa Kinoshita; Tatsuya Hirano; Masashi Tachikawa

  PLoS Computational Biology, Jun. 2018, Peer-reviewed

  
• Measurement of caveolin-1 densities in the cell membrane for quantification of caveolar deformation after exposure to hypotonic membrane tension

  Masashi Tachikawa; Nobuhiro Morone; Yosuke Senju; Tadao Sugiura; Kyoko Hanawa-Suetsugu; Atsushi Mochizuki; Shiro Suetsugu

  Scientific Reports, 01 Dec. 2017, Peer-reviewed

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• Dynamical pattern selection of growing cellular mosaic in fish retina

  Noriaki Ogawa; Tetsuo Hatsuda; Atsushi Mochizuki; Masashi Tachikawa

  Physical Review E, 26 Sep. 2017, Peer-reviewed

  
• Sensitivity and network topology in chemical reaction systems

  Takashi Okada; Atsushi Mochizuki

  Physical Review E, 28 Aug. 2017, Peer-reviewed

  
• Expected Number of Fixed Points in Boolean Networks with Arbitrary Topology

  Fumito Mori; Atsushi Mochizuki

  Physical Review Letters, 14 Jul. 2017, Peer-reviewed

  
• Temperature–amplitude coupling for stable biological rhythms at different temperatures

  Gen Kurosawa; Atsuko Fujioka; Satoshi Koinuma; Atsushi Mochizuki; Yasufumi Shigeyoshi

  PLoS Computational Biology, Jun. 2017, Peer-reviewed

  
• Golgi apparatus self-organizes into the characteristic shape via postmitotic reassembly dynamics

  Masashi Tachikawa; Atsushi Mochizuki

  Proceedings of the National Academy of Sciences of the United States of America, 16 May 2017, Peer-reviewed

  
• Controlling segregation speed of entangled polymers by their shapes

  Sakai Yuji; Tachikawa Masashi; Mochizuki Atsushi

  Meeting Abstracts of the Physical Society of Japan, 2017

  
• Controlling segregation speed of entangled polymers by the shapes: A simple model for eukaryotic chromosome segregation

  Yuji Sakai; Masashi Tachikawa; Atsushi Mochizuki

  Physical Review E, 06 Oct. 2016, Peer-reviewed

  
• Law of Localization in Chemical Reaction Networks

  Takashi Okada; Atsushi Mochizuki

  Physical Review Letters, 20 Jul. 2016, Peer-reviewed

  
• Flat leaf formation realized by cell-division control and mutual recessive gene regulation

  Yoshinori Hayakawa; Masashi Tachikawa; Atsushi Mochizuki

  Journal of Theoretical Biology, 2016, Peer-reviewed

  
• Theoretical approaches for the dynamics of complex biological systems from information of networks

  Atsushi Mochizuki

  Proceedings of the Japan Academy Series B: Physical and Biological Sciences, 2016

  
• Sensitivity of chemical reaction networks: A structural approach. 2. Regular monomolecular systems

  Bernold Fiedler; Atsushi Mochizuki

  Mathematical Methods in the Applied Sciences, 15 Nov. 2015, Peer-reviewed

  
• Mathematical study of pattern formation accompanied by heterocyst differentiation in multicellular cyanobacterium

  Jun ichi Ishihara; Masashi Tachikawa; Hideo Iwasaki; Atsushi Mochizuki

  Journal of Theoretical Biology, Apr. 2015, Peer-reviewed

  
• Sensitivity of chemical reaction networks: A structural approach. 1. Examples and the carbon metabolic network

  Atsushi Mochizuki; Bernold Fiedler

  Journal of Theoretical Biology, 01 Feb. 2015, Peer-reviewed

  
• Nonlinearity in cytoplasm viscosity can generate an essential symmetry breaking in cellular behaviors

  Masashi Tachikawa; Atsushi Mochizuki

  Journal of Theoretical Biology, 07 Jan. 2015, Peer-reviewed

  
• Mathematical study for the mechanism of vascular and spot patterns by auxin and pin dynamics in plant development

  Yoshinori Hayakawa; Masashi Tachikawa; Atsushi Mochizuki

  Journal of Theoretical Biology, 01 Jan. 2015, Peer-reviewed

  
• A Boolean Function for Neural Induction Reveals a Critical Role of Direct Intercellular Interactions in Patterning the Ectoderm of the Ascidian Embryo

  Naoyuki Ohta; Kana Waki; Atsushi Mochizuki; Yutaka Satou

  PLoS Computational Biology, 2015, Peer-reviewed

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• General Applicability of Synthetic Gene-Overexpression for Cell-Type Ratio Control via Reprogramming

  Kana Ishimatsu; Takashi Hata; Atsushi Mochizuki; Ryoji Sekine; Masayuki Yamamura; Daisuke Kiga

  ACS Synthetic Biology, 19 Sep. 2014, Peer-reviewed

  
• Live imaging and quantitative analysis of gastrulation in mouse embryos using light-sheet microscopy and 3D tracking tools.

  Takehiko Ichikawa; Kenichi Nakazato; Philipp J Keller; Hiroko Kajiura-Kobayashi; Ernst H K Stelzer; Atsushi Mochizuki; Shigenori Nonaka

  Nature protocols, Mar. 2014, Peer-reviewed

  
• Live imaging and quantitative analysis of gastrulation in mouse embryos using light-sheet microscopy and 3D tracking tools

  Takehiko Ichikawa; Kenichi Nakazato; Philipp J. Keller; Hiroko Kajiura-Kobayashi; Ernst H.K. Stelzer; Atsushi Mochizuki; Shigenori Nonaka

  Nature Protocols, Mar. 2014, Peer-reviewed

  
• Erratum: Live imaging and quantitative analysis of gastrulation in mouse embryos using light-sheet microscopy and 3D tracking tools (Nature Protocols (2014) 9 (575-585))

  Takehiko Ichikawa; Kenichi Nakazato; Philipp J. Keller; Hiroko Kajiura-Kobayashi; Ernst H.K. Stelzer; Atsushi Mochizuki; Shigenori Nonaka

  Nature Protocols, 01 Jan. 2014, Peer-reviewed

  
• Local apoptosis modulates early mammalian brain development through the elimination of morphogen-producing cells

  Keiko Nonomura; Yoshifumi Yamaguchi; Misato Hamachi; Masato Koike; Yasuo Uchiyama; Kenichi Nakazato; Atsushi Mochizuki; Asako Sakaue-Sawano; Atsushi Miyawaki; Hiroki Yoshida; Keisuke Kuida; Masayuki Miura

  Developmental Cell, 23 Dec. 2013, Peer-reviewed

  
• Dynamics and control at feedback vertex sets. II: A faithful monitor to determine the diversity of molecular activities in regulatory networks

  Atsushi Mochizuki; Bernold Fiedler; Gen Kurosawa; Daisuke Saito

  Journal of Theoretical Biology, 21 Oct. 2013, Peer-reviewed

  
• Dynamics and Control at Feedback Vertex Sets. I: Informative and Determining Nodes in Regulatory Networks

  Bernold Fiedler; Atsushi Mochizuki; Gen Kurosawa; Daisuke Saito

  Journal of Dynamics and Differential Equations, Sep. 2013, Peer-reviewed

  
• Live Imaging of Whole Mouse Embryos during Gastrulation: Migration Analyses of Epiblast and Mesodermal Cells

  Takehiko Ichikawa; Kenichi Nakazato; Philipp J. Keller; Hiroko Kajiura-Kobayashi; Ernst H.K. Stelzer; Atsushi Mochizuki; Shigenori Nonaka

  PLoS ONE, 08 Jul. 2013, Peer-reviewed

  
• Raman imaging of the diverse states of the filamentous cyanobacteria

  J. Ishihara; M. Tachikawa; A. Mochizuki; Y. Sako; H. Iwasaki; S. Morita

  Proceedings of SPIE - The International Society for Optical Engineering, 2013, Peer-reviewed

  
• Circadian Regulation of Food-Anticipatory Activity in Molecular Clock-Deficient Mice

  Nana N. Takasu; Gen Kurosawa; Isao T. Tokuda; Atsushi Mochizuki; Takeshi Todo; Wataru Nakamura

  PLoS ONE, 07 Nov. 2012, Peer-reviewed

  
• Principles of branch dynamics governing shape characteristics of cerebellar Purkinje cell dendrites

  Kazuto Fujishima; Ryota Horie; Atsushi Mochizuki; Mineko Kengaku

  Development (Cambridge), 15 Sep. 2012, Peer-reviewed

  
• Fluid flow and interlinked feedback loops establish left-right asymmetric decay of Cerl2 mRNA

  Tetsuya Nakamura; Daisuke Saito; Aiko Kawasumi; Kyosuke Shinohara; Yasuko Asai; Katsuyoshi Takaoka; Fenglan Dong; Atsuko Takamatsu; Jose Antonio Belo; Atsushi Mochizuki; Hiroshi Hamada

  Nature Communications, 2012, Peer-reviewed

  
• Conserved properties of dendritic trees in four cortical interneuron subtypes

  Yoshiyuki Kubota; Fuyuki Karube; Masaki Nomura; Allan T. Gulledge; Atsushi Mochizuki; Andreas Schertel; Yasuo Kawaguchi

  Scientific Reports, 2011, Peer-reviewed

  
• Analyzing steady states of dynamics of bio-molecules from the structure of regulatory networks

  Atsushi Mochizuki; Daisuke Saito

  Journal of Theoretical Biology, Sep. 2010, Peer-reviewed

  
• Structure of regulatory networks and dynamics of bio-molecules: Predicting unknown from known

  Atsushi Mochizuki; Daisuke Saito

  DEVELOPMENTAL BIOLOGY, Aug. 2010, Peer-reviewed

  
• Mathematical modeling of gene regulatory network for somite segmentation in mice

  Daisuke Saito; Jun Takahashi; Shinji Takada; Atsushi Mochizuki

  DEVELOPMENTAL BIOLOGY, Aug. 2010, Peer-reviewed

  
• Analysis of Ripply1/2-deficient mouse embryos reveals a mechanism underlying the rostro-caudal patterning within a somite

  Jun Takahashi; Akiko Ohbayashi; Masayuki Oginuma; Daisuke Saito; Atsushi Mochizuki; Yumiko Saga; Shinji Takada

  Developmental Biology, Jun. 2010, Peer-reviewed

  
• Computational modeling of dendritic tiling by diffusible extracellular suppressor

  Kohei Shimono; Kaoru Sugimura; Mineko Kengaku; Tadashi Uemura; Atsushi Mochizuki

  Genes to Cells, Feb. 2010, Peer-reviewed

  
• Structure of regulatory networks and dynamics of bio-molecules: predicting unknown from known

  Atsushi Mochizuki; Daisuke Saitou

  JOURNAL OF PHYSIOLOGICAL SCIENCES, 2010, Peer-reviewed

  
• Dendritic dimensions and signal conduction properties of cortical nonpyramidal cells

  Yoshiyuki Kubota; Fuyuki Karube; Masaki Nomura; Allan T. Gulledge; Atsushi Mochizuki; Yasuo Kawaguchi

  NEUROSCIENCE RESEARCH, 2010, Peer-reviewed

  
• Dynamics and mechanisms of branch pattern formation of Purkinje cell dendrites

  Mineko Kengaku; Kazuto Fujishima; Ryota Horie; Atsushi Mochizuki

  NEUROSCIENCE RESEARCH, 2010, Peer-reviewed

  
• High-throughput analysis elucidates the complex pattern of sensory-motor integration in thermotactic behavior of C-elegans

  Kenichi Nakazato; Atsushi Kuhara; Ikue Mori; Atsushi Mochizuki

  NEUROSCIENCE RESEARCH, 2010, Peer-reviewed

  
• Steepness of thermal gradient is essential to obtain a unified view of thermotaxis in C. elegans

  Kenichi Nakazato; Atsushi Mochizuki

  Journal of Theoretical Biology, 07 Sep. 2009, Peer-reviewed

  
• Mathematical modeling for self-organizing pattern of neuronal dendrites

  Atsushi Mochizuki; Kohei Shimono; Kaoru Sugimura; Tadashi Uemura

  NEUROSCIENCE RESEARCH, 2009, Peer-reviewed

  
• Mathematical modeling of thermotaxis in C. elegans using video analysis

  Kenichi Nakazato; Atsushi Mochizuki

  NEUROSCIENCE RESEARCH, 2009, Peer-reviewed

  
• Benefits of repeated mine trackings by a parasitoid when the host leafminer has a tortuous feeding pattern

  Yoshiko Ayabe; Midori Tuda; Atsushi Mochizuki

  Animal Behaviour, Dec. 2008, Peer-reviewed

  
• Structure of regulatory networks and diversity of gene expression patterns

  Atsushi Mochizuki

  Journal of Theoretical Biology, 21 Jan. 2008, Peer-reviewed

  
• Characterization of lysozymes from three shellfish

  Kouji Miyauchi; Nobuyasu Tsubuku; Masahiro Matsumiya; Atsushi Mochizuki

  FISHERIES SCIENCE, Dec. 2007, Peer-reviewed

  
• Self-organizing mechanism for development of space-filling neuronal dendrites

  Kaoru Sugimura; Kohei Shimono; Tadashi Uemura; Atsushi Mochizuki

  PLoS Computational Biology, Nov. 2007, Peer-reviewed

  
• A mass conserved reaction-diffusion system captures properties of cell polarity

  Mikiya Otsuji; Shuji Ishihara; Carl Co; Kozo Kaibuchi; Atsushi Mochizuki; Shinya Kuroda

  PLoS Computational Biology, Jun. 2007, Peer-reviewed

  
• Transient and steady state of mass-conserved reaction-diffusion systems

  Shuji Ishihara; Mikiya Otsuji; Atsushi Mochizuki

  Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, 30 Jan. 2007, Peer-reviewed

  
• Dendritic dimensions of cortical nonpyramidal cells

  Yoshiyuki Kubota; Fuyuki Karube; Masaki Nomura; Toshio Aoyagi; Atsushi Mochizuki; Yasuo Kawaguchi

  NEUROSCIENCE RESEARCH, 2007, Peer-reviewed

  
• A Mass Conserved Reaction-Diffusion System Captures Properties of Cell Polarity.

  Mikiya Otsuji; Shuji Ishihara; Carl Co; Kozo Kaibuchi; Atsushi Mochizuki; Shinya Kuroda

  PLoS Computational Biology, 2007, Peer-reviewed

  
• The origin of the diversity of leaf venation pattern

  Hironori Fujita; Atsushi Mochizuki

  Developmental Dynamics, Oct. 2006, Peer-reviewed

  
• Predicting regulation of the phosphorylation cycle of KaiC clock protein using mathematical analysis

  Hisako Takigawa-Imamura; Atsushi Mochizuki

  Journal of Biological Rhythms, Oct. 2006, Peer-reviewed

  
• Generation of Robust Left-Right Asymmetry in the Mouse Embryo Requires a Self-Enhancement and Lateral-Inhibition System

  Tetsuya Nakamura; Naoki Mine; Etsushi Nakaguchi; Atsushi Mochizuki; Masamichi Yamamoto; Kenta Yashiro; Chikara Meno; Hiroshi Hamada

  Developmental Cell, Oct. 2006, Peer-reviewed

  
• Mathematical analysis of leaf venation pattern formation

  Fujita H; Iwasa Y; Mochizuki A

  Plant and Cell Physiology, 2005, Peer-reviewed

  
• Purification and some properties of a chitinase isozyme from the liver of Japanese common squid Todarodes pacificus

  Masahiro Matsumiya; Kouji Miyauchi; Atsushi Mochizuki

  Fisheries Science, Apr. 2003, Peer-reviewed

  
• Difference in the retinal cone mosaic pattern between zebrafish and medaka: Cell-rearrangement model

  Shusaku Tohya; Atsushi Mochizuki; Y. Iwasa

  Journal of Theoretical Biology, 21 Mar. 2003, Peer-reviewed

  
• Lysozyme activity in shellfishes II

  Kouji Miyauchi; Masahiro Matsumiya; Atsushi Mochizuki

  Nippon Suisan Gakkaishi (Japanese Edition), 2002, Peer-reviewed

  

Misc.

• Formation of graded cell arrangement by cell repulsion

  Honda H.; Mochizuki A.

  Seibutsu Butsuri, 2001

  
• Understanding the Robustness of Biological Network Systems by a Mathematical Theory

  望月 敦史

  細胞工学, 2014

  
• シアノバクテリア概日リズムの分子機構の解明へ向けた数理的アプローチ

  今村(滝川)寿子; 今村(滝川)寿子; 望月敦史; 望月敦史; 望月敦史

  時間生物学, 2008

  
• シアノバクテリアの転写のない概日リズムを数理的に解析する

  今村(滝川)寿子; 今村(滝川)寿子; 望月敦史; 望月敦史

  日本発生生物学会大会発表要旨集, 2006

  
• シアノバクテリアの転写のない概日リズムを数理的に解析する

  今村寿子; 今村寿子; 望月敦史; 望月敦史

  日本分子生物学会年会講演要旨集, 2005

  
• 確率モデルを用いたCell Sortingの研究 : パターンから接着力を読み取る(ポスターセッション-離散多体系、生物、粉体、交通流など-,複合系II要素と全体-現象論の視座-,研究会報告)

  望月 敦史; 巌佐 庸; 武田 裕彦

  物性研究, 1996

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• THE EVOLUTION OF GENOMIC IMPRINTING : WHY ARE THERE SO FEW IMPRINTED GENES?

  IWASA Y.; MOCHIZUKI A.; TAKEDA Y.

  The Japanese journal of genetics, 01 Dec. 1995

  
• Cell Sortingのダイナミクスをペア近似を用いて捉える

  望月敦史

  日本生物物理学会第32回年会講演予稿集, 1994

  
• Acute regulation of cell surface area by the balance between flattening and endocytosis of caveolae

  SENJU Yosuke; TACHIKAWA Masashi; MOCHIZUKI Atsushi; SUETSUGU Shiro

  日本細胞生物学会大会要旨集, 2013

  
• 低浸透圧によるカベオラのエンドサイトーシスと細胞の表面積の調節

  千住洋介; 立川正志; 望月敦史; 末次志郎

  日本生化学会大会(Web), 2012

  
• 食事性概日リズムに関する生理学・数理生物学的アプローチ

  黒澤元; 望月敦史; 中村渉

  日本数理生物学会大会講演要旨集, 2011

  
• Patterns on the Fish Skins Induced by Anisotropy in Diffusion (Interfaces, Pulses and Waves in Nonlinear Dissipative Systems : RIMS Project 2000 "Reaction-diffusion systems : theory and applications")

  Mochizuki Atsushi

  RIMS Kokyuroku, Feb. 2001

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• a cell differentiation model of mosaic pattern formation on fish retina

  Tohya S.; Mochizuki A.; Iwasa Y.

  Biophysics, 07 Sep. 1998

  
• Spatial patterns generated by cell-cell adhesion : inferring adhesion force and cone mosaic.

  Mochizuki A.

  Biophysics, 07 Sep. 1998

  
• Cell-cell adhesion in limb-formation, extimated from photographs of cell sorting experiments based on a spatial stochasitic model

  MOCHIZUKI A.; WADA N.; IDE H.; IWASA Y.

  Biophysics, Oct. 1997

  
• A mathematical research on branching pattern formation of the epithelioma

  TOHYA S.; MOCHIZUKI A.; IWASA Y.

  Biophysics, Oct. 1997

  
• Reguler pattern formation of cone mosaic in fish retina : Two theoretical models

  TAKESUE A.; MOCHIZUKI A.; IWASA T.

  Biophysics, Oct. 1997

  
• 生物の形態形成と数理モデル

  望月 敦史; MOCHIZUKI Atsushi

  盛岡応用数学小研究集会報告集, 01 Jan. 2004

  
• オートファゴソーム形成過程における膜曲率安定化因子と膜供給:物理モデルと生細胞観察による研究

  小山(本田)郁子; 立川正志; 境祐二; 田村律人; 望月敦史; 水島昇

  日本生化学会大会(Web), 2018

  
• シミュレーションによるゴルジ体の自己組織化的な形成過程

  立川正志; 望月敦史

  実験医学, Sep. 2017, Invited

  
• 染色体の形と分離の関係

  境祐二; 境祐二; 立川正志; 望月敦史

  日本物理学会講演概要集(CD-ROM), 2017

  
• オートファゴソーム形成の生細胞観察と物理モデル構築

  小山(本田)郁子; 立川正志; 境祐二; 境祐二; 田村律人; 田村律人; 望月敦史; 水島昇

  日本生化学会大会(Web), 2017

  
• 染色体の形成と分離におけるコンデンシン機能のモデル

  境祐二; 境祐二; 望月敦史; 木下和久; 平野達也; 立川正志

  日本数理生物学会年会(Web), 2017

  
• 潜葉虫寄生蜂における最適採餌戦略~観察結果のシミュレーションモデルによる検証~

  綾部慈子; 津田みどり; 望月敦史

  日本生態学会大会講演要旨集, 2008

  
• 生命現象にみられるゆらぎ・振動・波 樹状突起が空間を埋めるための自己組織化機構(Self-organizing Mechanism for Development of Space-filling Dendrites)

  杉村 薫; 上村 匡; 望月 敦史

  日本発生生物学会・日本細胞生物学会合同大会要旨集, May 2007

  
• Transcriptional autoregulation by phosphorylated and non-phosphorylated KaiC in cyanobacterial circadian rhythms

  Hisako Takigawa-Imamura; Atsushi Mochizuki

  Journal of Theoretical Biology, 21 Jul. 2006, Peer-reviewed

  
• Pattern formation of leaf veins by the positive feedback regulation between auxin flow and auxin efflux carrier

  Hironori Fujita; Atsushi Mochizuki

  Journal of Theoretical Biology, 07 Jul. 2006, Peer-reviewed

  
• Genetic addiction: Selfish gene's strategy for symbiosis in the genome

  Atsushi Mochizuki; Koji Yahara; Ichizo Kobayashi; Yoh Iwasa

  Genetics, Feb. 2006, Peer-reviewed

  
• Self-organization of the vascular system in plant leaves: Inter-dependent dynamics of auxin flux and carrier proteins

  Francois G. Feugier; A. Mochizuki; Y. Iwasa

  Journal of Theoretical Biology, 21 Oct. 2005, Peer-reviewed

  
• An analytical study of the number of steady states in gene regulatory networks

  Atsushi Mochizuki

  Journal of Theoretical Biology, 07 Oct. 2005, Peer-reviewed

  
• 何が細胞の多様性を作り出すのか？

  蛋白質核酸酵素 2005年12月号 特集「数理生物学」（編集 巌佐庸）共立出版, 2005

  
• 数理モデルで解く発生

  蛋白質核酸酵素 「発生システムのダイナミクス」（上野直人・八杉貞雄・野地澄晴 編）共立出版, 2005

  
• 潜葉虫の寄生蜂の探索戦略と潜孔の複雑さの関係

  綾部慈子; 望月敦史; 津田みどり; 上野高敏

  日本応用動物昆虫学会大会講演要旨, 2004

  
• Possibility of tissue separation caused by cell adhesion

  Ryohji Takano; Atsushi Mochizuki; Yoh Iwasa

  Journal of Theoretical Biology, Apr. 2003, Peer-reviewed

  
• Origin of directionality in the fish stripe pattern

  Hiroto Shoji; Atsushi Mochizuki; Yoh Iwasa; Masashi Hirata; Tsuyoshi Watanabe; Syozo Hioki; Shigeru Kondo

  Developmental Dynamics, Apr. 2003, Peer-reviewed

  
• Random cell sorting can form cone mosaic patterns in fish retina and explain the difference between zebrafish and medaka.

  J. Theor. Biol., 2003

  
• Comparative study of circadian clock models, in search of processes promoting oscillation

  Gen Kurosawa; Atsushi Mochizuki; Yoh Iwasa

  Journal of Theoretical Biology, 2002, Peer-reviewed

  
• Pattern formation of the cone mosaic in the zebrafish retina: A cell rearrangement model

  Atsushi Mochizuki

  Journal of Theoretical Biology, 2002, Peer-reviewed

  
• Formation and maintenance of distinctive cell patterns by coexpression of membrane-bound ligands and their receptors

  Hisao Honda; Atsushi Mochizuki

  Developmental Dynamics, 2002, Peer-reviewed

  
• Directionality of stripes formed by anisotropic reaction-diffusion models

  Hiroto Shoji; Yoh Iwasa; Atsushi Mochizuki; Shigeru Kondo

  Journal of Theoretical Biology, 2002, Peer-reviewed

  
• Formation of cone mosaic of zebrafish retina

  Shusaku Tohya; Atsushi Mochizuki; Yoh Iwasa

  Journal of Theoretical Biology, 21 Sep. 1999, Peer-reviewed

  
• Estimating cell lineage from distributions of randomly introduced markers

  Atsushi Mochizuki

  Journal of Theoretical Biology, 21 Mar. 1999, Peer-reviewed

  
• The evolution of genomic imprinting: Abortion and overshoot explain aberrations

  Yoh Iwasa; Atsushi Mochizuki; Yasuhiko Takeda

  Evolutionary Ecology Research, Feb. 1999, Peer-reviewed

  
• Cell-differentiation rules that generate regular mosaic patterns: Modelling motivated by cone mosaic formation in fish retina

  Akio Takesue; Atsushi Mochizuki; Yoh Iwasa

  Journal of Theoretical Biology, 21 Oct. 1998, Peer-reviewed

  
• On rugged shape of skin tumor (basal cell carcinoma)

  Shusaku Tohya; Atsushi Mochizuki; Shuhei Imayama; Yoh Iwasa

  Journal of Theoretical Biology, 07 Sep. 1998, Peer-reviewed

  
• Cell-cell adhesion in limb-formation, estimated from photographs of cell sorting experiments based on a spatial stochastic model

  Atsushi Mochizuki; Naoyuki Wada; Hiroyuki Ide; Yoh Iwasa

  Developmental Dynamics, Mar. 1998, Peer-reviewed

  
• Modeling spatio-temporal patterns generated by Bacillus subtilis

  K. Kawasaki; A. Mochizuki; M. Matsushita; T. Umeda; N. Shigesada

  Journal of Theoretical Biology, 21 Sep. 1997, Peer-reviewed

  
• Evolution of genomic imprinting : Why are so few genes imprinted? (共著)

  Journal of Reproduction and Development, 1997

  
• A stochastic model for cell sorting and its application(共著)

  MOCHIZUKI Atsushi; TAKEDA Yasuhiko; IDE Hiroyuki; IWASA Yoh

  Forma, 1997

  
• A stochastic model for cell sorting and measuring cell-cell adhesion

  Atsushi Mochizuki; Yoh Iwasa; Yasuhiko Takeda

  Journal of Theoretical Biology, 14 Mar. 1996, Peer-reviewed

  
• Recent progress of modeling for cell sorthing

  MOCHIZUKI Atsushi

  Seibutsu Butsuri, 1996

  
• Recent progress on theoretical analysis of cell sorting

  Biophysics, 1996

  
• The evolution of genomic imprinting

  Atsushi Mochizuki; Yasuhiko Takeda; Yoh Iwasa

  Genetics, 1996, Peer-reviewed

  
• Special Issue on Recent Topics on Mathematical Biology - Focused on Neural Coding. Mathematical Models of Pattern Formation in Bacterial Colonies.

  KAWASAKI Kokichi; MOCHIZUKI Atsushi; SHIGESADA Nanako

  Journal of The Society of Instrument and Control Engineers, 1995

  
• Mathematical modeling for pattern formation of bacterial colonies

  1995

  

Presentations

• Controlling cell fate specification system based on network structure

  MOCHIZUKI Atsushi

  NetSci Satellite Symposium, 28 May 2019, Invited

  
• Controlling cell fate specification system based on network structure

  MOCHIZUKI Atsushi

  International Workshop on Mathematical Biology 2019, 08 Jan. 2019, Invited

  
• Origin of Adaptation and Modularity in Chemical Reaction Networks

  MOCHIZUKI Atsushi

  Gordon Research Conference 2018 on Oscillations and Dynamic Instabilities in Chemical Systems, 11 Jul. 2018, Invited

  
• Structural analysis for sensitivity of chemical reaction networks

  MOCHIZUKI Atsushi

  International Workshop on Mathematical Biology 2018, 09 Jan. 2018, Invited

  
• Dynamical behaviors of nonlinear complex systems determined from the structure of networks

  MOCHIZUKI Atsushi

  Society for Mathematical Biology Meeting 2017, 19 Jul. 2017, Invited

  
• Observation and Control of Complex Nonlinear Systems Based on Network Structures

  MOCHIZUKI Atsushi

  BIRS Workshop "Mathematical Analysis of Biological Interaction Networks", 06 Jun. 2017, Invited

  
• Dynamics of complex biological systems determined/controlled by minimal subsets of molecules in regulatory networks

  MOCHIZUKI Atsushi

  NetSci Satellite Symposium, 11 May 2016, Invited

  
• Dynamics of complex biological systems determined/controlled by minimal subsets of molecules in regulatory networks

  MOCHIZUKI Atsushi

  MBI Workshop IV 2016, 13 Apr. 2016

  
• Structural approach for sensitivity of chemical reaction networks

  MOCHIZUKI Atsushi

  MBI Workshop I 2016, 27 Jan. 2016, Invited

  
• Structural approach for sensitivity of chemical reaction networks

  MOCHIZUKI Atsushi

  BMB2015, 03 Dec. 2015, Invited

  
• Structural approaches for dynamics of complex network systems

  MOCHIZUKI Atsushi

  International Conference on Mathematical Modeling and Applications 2015, 27 Oct. 2015, Invited

  
• Structural approaches for dynamics of complex network systems

  MOCHIZUKI Atsushi

  2015 JSMB-CJK, 27 Aug. 2015, Invited

  
• Sensitivity of chemical reaction networks: A structural approach

  MOCHIZUKI Atsushi

  8th International Conference for Engineering of Chemical Complexity, 03 Jul. 2015, Invited

  
• Dynamics of complex biological systems determined/controlled by minimal subsets of molecules in regulatory networks

  MOCHIZUKI Atsushi

  10QTDE Colloquium on the Qualitative Theory of Differential Equations, 03 Jul. 2015

  
• Sensitivity of chemical reaction networks: A structural approach

  MOCHIZUKI Atsushi

  The Third BMIRC International Symposium for Virtual Physiological Human, 06 Mar. 2015, Invited

  
• Dynamics of complex biological systems determined/controlled by minimal subsets of molecules in regulatory networks

  MOCHIZUKI Atsushi

  10th AIMS Conference on Dynamical Systems, Differential Equations and Applications, 10 Jul. 2014, Invited

  
• Sensitivity of chemical reaction networks: a structural approach

  MOCHIZUKI Atsushi

  NCBS-RIKEN joint meeting for theoretical approaches in biology, 01 May 2014, Invited

  

Books and Other Publications

• 理論生物学 : 生命科学の新しい潮流

  望月, 敦史

  共立出版, 2011

  Find Kyoto University's collection of books :

  
• 生物の表面パターンと数理モデル

  非線形・非平衡現象の数理２（三村昌泰 監修） 生物に見られるパターンとその起源 （松下貢 編） 東京大学出版, 2005, Not refereed

  
• 生物における形づくりと細胞間相互作用 : ゼブラフィッシュ網膜の錐体モザイクを例に

  望月, 敦史

  [九州大学], 2002

  
• 細胞間接着・細胞間誘導による細胞の配置

  生物の形づくりの数理と物理 (本多久夫編), 2000, Not refereed

  

Awards

• 24 Feb. 2015

  Japan Society for the Promotion of Science, 11th JSPS PRIZE
• 22 Dec. 2017

  Meiji Institute for Advanced Study of Mathematical Sciences (MIMS), 1st MIMS Mimura Award

External funds: Kakenhi

• Mathematical analyses for oscillatory behaviors in plants by integrating molecular dynamics and cellular mechanics

  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)

  Biological Sciences

  Kyoto University

  Atsushi Mochizuki

  From 28 Jun. 2019, To 31 Mar. 2024, Project Closed

  数理モデル;ダイナミクス;形態形成;構造感度解析;構造分岐解析;細胞周期;ネットワーク;植物;花弁;萼;構造理論;バイオメカニクス;数理解析;数理生物学;周期性

  https://kaken.nii.ac.jp/grant/KAKENHI-PLANNED-19H05678/
• Intrinsic periodicity of cellular systems and its modulation as the driving force be

  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)

  Biological Sciences

  Nara Institute of Science and Technology

  中島 敬二

  From 28 Jun. 2019, To 31 Mar. 2024, Granted

  植物発生;周期性;画像解析;数理解析;人間拡張工学;細胞動態

  https://kaken.nii.ac.jp/grant/KAKENHI-ORGANIZER-19H05670/
• Mathematical study for homeostasis in living systems based on network structure

  Grant-in-Aid for Scientific Research (B)

  Basic Section 43040:Biophysics-related

  Kyoto University

  Atsushi Mochizuki

  From 01 Apr. 2019, To 31 Mar. 2022, Project Closed

  反応ネットワーク;制御ネットワーク;数理理論;構造感度解析;構造分岐解析;細胞周期;恒常性;ネットワーク;感度解析;分岐解析;チェックポイント制御;ダイナミクス;数理解析;構造理論;数理生物学

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-19H03196/
• Spatiotemporal regulation of cell division axis as a grand plan of plant developmental evolution

  Grant-in-Aid for Scientific Research (S)

  National Institute for Basic Biology

  Mitsuyasu Hasebe

  From 31 May 2016, To 31 Mar. 2021, Project Closed

  ヒメツリガネゴケ;発生進化;GRAS転写因子;局所細胞伸長;ABC輸送体;クチクラ;細胞分裂軸;ミカヅキモ;分裂面形成;細胞分裂面制御;微小管

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-16H06378/
• 植物発生進化のグランドプランとしての細胞分裂軸制御機構の解明と進化

  Grant-in-Aid for Scientific Research (A)

  National Institute for Basic Biology

  長谷部 光泰

  From 01 Apr. 2016, To 31 Mar. 2017, Discontinued

  細胞分裂軸;細胞分裂面;進化;ヒメツリガネゴケ;グランドプラン;発生進化;植物;細胞

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-16H02520/
• Development and Application of Topological Computation Theory for Dynamical Systems

  Grant-in-Aid for Scientific Research (B)

  Kyoto University

  Hiroshi Kokubu

  From 01 Apr. 2013, To 31 Mar. 2018, Project Closed

  力学系;トポロジー;計算機援用解析;時系列;気象学;位相計算;生命科学;ネットワーク

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-25287029/
• Elucidation of metabolic network underlying plant development

  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)

  Biological Sciences

  Institute of Physical and Chemical Research

  Masami Hirai

  From 28 Jun. 2013, To 31 Mar. 2018, Project Closed

  代謝ネットワーク;発生;メタボロミクス;数理モデリング;分子遺伝学

  https://kaken.nii.ac.jp/grant/KAKENHI-PLANNED-25113010/
• Multidimensional Exploration of Logics of Plant Development

  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)

  Biological Sciences

  The University of Tokyo

  Hirokazu Tsukaya

  From 28 Jun. 2013, To 31 Mar. 2018, Project Closed

  植物発生;ロジック;形態形成;メタボロミクス;e-learning;転写因子;ゼニゴケ;数理解析;国際シンポジウム;アウトリーチ

  https://kaken.nii.ac.jp/grant/KAKENHI-ORGANIZER-25113001/
• Design and Analysis for Dynamical Genetic Circuits based on various Mathematical Models

  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)

  Complex systems

  Tokyo Institute of Technology

  Masayuki YAMAMURA

  From 01 Apr. 2011, To 31 Mar. 2016, Project Closed

  人工遺伝子回路;非線形動力学;確率過程;複雑ネットワーク;並列シミュレーション;並列シュミレーション;合成生物学;遺伝子回路;代謝経路;非線形システム

  https://kaken.nii.ac.jp/grant/KAKENHI-PLANNED-23119008/
• Genetic Bases for the Evolution of Complex Adaptive Traits

  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)

  Biological Sciences

  National Institute for Basic Biology

  MITSUYASU HASEBE

  From 01 Apr. 2010, To 31 Mar. 2016, Project Closed

  複合適応形質;進化;進化学;ゲノム生物学;ゲノム;1分子並列シーケンサー;遺伝子機能解析

  https://kaken.nii.ac.jp/grant/KAKENHI-ORGANIZER-22128001/
• Qualitative Properties of Solutions of Differential Equations Modeling Biological Pattern Formation

  Grant-in-Aid for Scientific Research (A)

  Tohoku University

  Izumi TAKAGI

  From 01 Apr. 2006, To 31 Mar. 2010, Project Closed

  反応拡散方程式;活性因子-抑制因子系;進行波解;非一様な媒質;幾何学的変分問題;曲線の運動;反応拡散方程式系;脂質二層膜の形態変換;活性因子抑制因子系;パターンの崩壊;反応拡散系;パターン形成;界面;曲面・曲線の運動;非一様な媒体;曲面の運動;走化性モデル

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-18204010/
• Analysis of Structure and Dynamics of Biological Information Networks

  Grant-in-Aid for Scientific Research on Priority Areas

  Biological Sciences

  Kyoto University

  Tatsuya AKUTSU

  From 01 Apr. 2005, To 31 Mar. 2010, Project Closed

  遺伝子ネットワーク;代謝ネットワーク;タンパク質相互作用;スケールフリーネットワーク;タンパク質ドメイン;遺伝子発現;大規模進化動力学モデル;生物情報ネットワーク;スケールフリー;進化動力学モデル;緑膿菌;ブーリアンネットワーク;形態形成;神経細胞;遺伝子発現データ;オペロン;ネットワーク定常状態;概日リズム;バイオインフォマティクス;システム生物学;べき乗則;遺伝子間相互作用

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-17017019/
• Mathematical Approach to Nonlinear-Non-equilibrium Phenomena - Understanding of Transient Spatio-temporal Patterns-

  Grant-in-Aid for Scientific Research (A)

  Meiji University;Hiroshima University

  Masayasu MIMURA

  From 01 Apr. 2003, To 31 Mar. 2006, Project Closed

  非線形非平衡系;遷移ダイナミクス;反応拡散系理論;細胞インテリジェンス;生態系モデル;葉脈形成;バクテリアコロニー形成;フロント・スポットの相互作用;大腸菌コロニー形成;パルス相互作用;反応拡散系;特異極限法;スポットダイナミクス;伝染病の伝播;有限資源・消費者系;進行波;パルスダイナミクス;反応拡散系の数値計算;界面ダイナミクス;成長パターン形成;中心多様体理論, Nonlinear-non-equilibrium system;Transient dynamics;Reaction-diffusion system theory;Cell intelligence;Ecological models;Venation formation;Formation of bacterial colonies;Interaction of fronts and spots

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-15204006/
• 3次元構造を持った表皮における形態形成の数理的研究

  Grant-in-Aid for Young Scientists (B)

  National Institute for Basic Biology;Okazaki National Research Institutes

  望月 敦史

  From 01 Apr. 2002, To 31 Mar. 2005, Project Closed

  発生生物学;形態形成;数理モデル;シミュレーション;魚類体表パターン;葉脈形成

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-14780559/
• 発生におけるパターン形成の数理的研究

  Grant-in-Aid for Scientific Research on Priority Areas

  Biological Sciences

  Okazaki National Research Institutes

  望月 敦史

  From 01 Apr. 2002, To 31 Mar. 2003, Project Closed

  発生生物学;形態形成;数理モデル;シミュレーション;錐体モザイク;葉脈形成

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-14011240/
• 発生におけるパターン形成の数理的研究

  Grant-in-Aid for Scientific Research on Priority Areas (C)

  Biological Sciences

  Kyushu University

  望月 敦史

  From 01 Apr. 2001, To 31 Mar. 2002, Project Closed

  数理生物学;発生・分化;理論発生生物学;応用数学;生物物理

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-13202053/
• Pattern formation in developmental biology and cell-cell interaction

  Grant-in-Aid for Scientific Research (C)

  KYUSHU UNIVERSITY

  Atsushi MOCHIZUKI

  From 01 Apr. 2000, To 31 Mar. 2002, Project Closed

  数理数理生物学;発生・分化;理論発生生物学;応用数学;生物物理;理論生物学;発生;細胞選別;細胞間接着;錐体モザイク;反応拡散方程式;パターン形成, Mathematical Biology;Developmental Biology;Theoretical biology;Applied Mathematics;Biophysics

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-12834010/
• Theoretical Study of Spatio-Temporal Dynamics of Synchronized Flowering and Reproduction of Trees in Forests

  Grant-in-Aid for Scientific Research (C)

  KYUSHU UNIVERSITY

  Yoh IWASA

  From 01 Apr. 2000, To 31 Mar. 2002, Project Closed

  一斉開花・結実;結合写像格子;空間共分散;大域結合モデル;ブナ林;熱帯雨林;送粉者の共有;時空間動態;一斉開花;結実;熱帯多雨林, synchronized reproduction;masting;coupled chaos system;pollen coupling;spatio-temporal dynamics;spatial covariance;beech

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-12640616/
• Kinetic, mathematical and Evo-devo analyses on leaf meristem

  Grant-in-Aid for Scientific Research (A)

  Medium-sized Section 44:Biology at cellular to organismal levels, and related fields

  The University of Tokyo

  塚谷 裕一

  From 01 Apr. 2024, To 31 Mar. 2027, Granted

  葉メリステム;数理的解析;動的解析;進化発生学的解析

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-24H00566/

External funds: others

• システムゲノム科学関連分野に関する学術研究動向 (2022年度分)

  Japan Society for the Promotion of Science (JSPS), 学術研究動向等に関する調査研究

  From 01 Apr. 2022, To 31 Mar. 2023

  代表者
• 「システムゲノム科学関連分野に関する学術研究動向」 (2021年度分)

  Japan Society for the Promotion of Science (JSPS), 学術動向研究等調査研究

  From 01 Apr. 2021, To 31 Mar. 2022

  代表者
• Solving complex network systems based on theories to connect structure and dynamics

  JST 戦略的創造研究推進事業 CREST「生命動態」

  From 01 Oct. 2013, To 31 Mar. 2020

  代表
• Mathematical understanding for the relationship between the dynamics of bio-molecules and the structures of regulatory networks

  JST 戦略的創造研究推進事業 さきがけ「生命モデル」

  From 01 Oct. 2007, To 31 Mar. 2011

  代表

Education

Teaching subject(s)

• From 01 Apr. 2025, To 31 Mar. 2026

  Integrated Liberal Arts and Science with Small Group Seminar s

  Y103, Spring, Institute for Liberal Arts and Sciences, 4
• From 01 Apr. 2024, To 31 Mar. 2025

  Seminar on Mathematical Bioscience ID

  9141, Fall, Graduate School of Science, 1
• From 01 Apr. 2024, To 31 Mar. 2025

  Seminar on Mathematical Bioscience IC

  9140, Spring, Graduate School of Science, 1
• From 01 Apr. 2024, To 31 Mar. 2025

  Seminar on Mathematical Bioscience IB

  9139, Fall, Graduate School of Science, 1
• From 01 Apr. 2024, To 31 Mar. 2025

  Seminar on Mathematical Bioscience IIC

  9144, Spring, Graduate School of Science, 1
• From 01 Apr. 2024, To 31 Mar. 2025

  Seminar on Mathematical Bioscience IIB

  9143, Fall, Graduate School of Science, 1
• From 01 Apr. 2024, To 31 Mar. 2025

  Seminar on Mathematical Bioscience IIA

  9142, Spring, Graduate School of Science, 1
• From 01 Apr. 2024, To 31 Mar. 2025

  Seminar on Mathematical Bioscience IA

  9138, Spring, Graduate School of Science, 1
• From 01 Apr. 2024, To 31 Mar. 2025

  Seminar on Mathematical Bioscience IID

  9145, Fall, Graduate School of Science, 1
• From 01 Apr. 2024, To 31 Mar. 2025

  Molecular Biology II

  2703, Fall, Faculty of Science, 2
• From 01 Apr. 2024, To 31 Mar. 2025

  Advanced Course on Biological Science A

  9011, Spring, Graduate School of Science, 2
• From 01 Apr. 2023, To 31 Mar. 2024

  Seminar on Mathematical Bioscience IC

  9140, Spring, Graduate School of Science, 1
• From 01 Apr. 2023, To 31 Mar. 2024

  Seminar on Mathematical Bioscience IB

  9139, Fall, Graduate School of Science, 1
• From 01 Apr. 2023, To 31 Mar. 2024

  Seminar on Mathematical Bioscience IA

  9138, Spring, Graduate School of Science, 1
• From 01 Apr. 2023, To 31 Mar. 2024

  Seminar on Mathematical Bioscience IIB

  9143, Fall, Graduate School of Science, 1
• From 01 Apr. 2023, To 31 Mar. 2024

  Seminar on Mathematical Bioscience IIA

  9142, Spring, Graduate School of Science, 1
• From 01 Apr. 2023, To 31 Mar. 2024

  Seminar on Mathematical Bioscience ID

  9141, Fall, Graduate School of Science, 1
• From 01 Apr. 2023, To 31 Mar. 2024

  Seminar on Mathematical Bioscience IIC

  9144, Spring, Graduate School of Science, 1
• From 01 Apr. 2023, To 31 Mar. 2024

  Seminar on Mathematical Bioscience IID

  9145, Fall, Graduate School of Science, 1
• From 01 Apr. 2023, To 31 Mar. 2024

  Advanced Course on Biological Science A

  9011, Spring, Graduate School of Science, 2
• From 01 Apr. 2023, To 31 Mar. 2024

  Molecular Biology II

  2703, Fall, Faculty of Science, 2
• From 01 Apr. 2022, To 31 Mar. 2023

  Seminar on Mathematical Bioscience IA

  9138, Spring, Graduate School of Science, 1
• From 01 Apr. 2022, To 31 Mar. 2023

  ILAS Seminar

  Z001, Spring, Institute for Liberal Arts and Sciences, 2
• From 01 Apr. 2022, To 31 Mar. 2023

  Seminar on Mathematical Bioscience IID

  9145, Fall, Graduate School of Science, 1
• From 01 Apr. 2022, To 31 Mar. 2023

  Seminar on Mathematical Bioscience IIB

  9143, Fall, Graduate School of Science, 1
• From 01 Apr. 2022, To 31 Mar. 2023

  Frontier in Life Sciences

  M213, Fall, Institute for Liberal Arts and Sciences, 1
• From 01 Apr. 2022, To 31 Mar. 2023

  Seminar on Mathematical Bioscience IIA

  9142, Spring, Graduate School of Science, 1
• From 01 Apr. 2022, To 31 Mar. 2023

  Advanced Course on Biological Science A

  9011, Spring, Graduate School of Science, 2
• From 01 Apr. 2022, To 31 Mar. 2023

  Seminar on Mathematical Bioscience ID

  9141, Fall, Graduate School of Science, 1
• From 01 Apr. 2022, To 31 Mar. 2023

  Seminar on Mathematical Bioscience IB

  9139, Fall, Graduate School of Science, 1
• From 01 Apr. 2022, To 31 Mar. 2023

  Seminar on Mathematical Bioscience IC

  9140, Spring, Graduate School of Science, 1
• From 01 Apr. 2022, To 31 Mar. 2023

  Frontier in Life Sciences

  5003, Fall, Graduate School of Biostudies, 1
• From 01 Apr. 2022, To 31 Mar. 2023

  Molecular Biology II

  2703, Fall, Faculty of Science, 2
• From 01 Apr. 2022, To 31 Mar. 2023

  Seminar on Mathematical Bioscience IIC

  9144, Spring, Graduate School of Science, 1
• From Apr. 2019, To Mar. 2020

  ILAS Seminar

  Spring, 全学共通科目
• From Apr. 2019, To Mar. 2020

  Seminar on Mathematical Bioscience IA

  Spring, 理学研究科
• From Apr. 2019, To Mar. 2020

  Seminar on Mathematical Bioscience IB

  Fall, 理学研究科
• From Apr. 2019, To Mar. 2020

  Seminar on Mathematical Bioscience IC

  Spring, 理学研究科
• From Apr. 2019, To Mar. 2020

  Seminar on Mathematical Bioscience ID

  Fall, 理学研究科
• From Apr. 2019, To Mar. 2020

  Seminar on Mathematical Bioscience IIA

  Spring, 理学研究科
• From Apr. 2019, To Mar. 2020

  Seminar on Mathematical Bioscience IIB

  Fall, 理学研究科
• From Apr. 2019, To Mar. 2020

  Seminar on Mathematical Bioscience IIC

  Spring, 理学研究科
• From Apr. 2019, To Mar. 2020

  Seminar on Mathematical Bioscience IID

  Fall, 理学研究科
• From Apr. 2020, To Mar. 2021

  Molecular Biology II

  Fall, 理学部
• From Apr. 2020, To Mar. 2021

  Seminar on Mathematical Bioscience IA

  Spring, 理学研究科
• From Apr. 2020, To Mar. 2021

  Seminar on Mathematical Bioscience IB

  Fall, 理学研究科
• From Apr. 2020, To Mar. 2021

  Seminar on Mathematical Bioscience IC

  Spring, 理学研究科
• From Apr. 2020, To Mar. 2021

  Seminar on Mathematical Bioscience ID

  Fall, 理学研究科
• From Apr. 2020, To Mar. 2021

  Seminar on Mathematical Bioscience IIA

  Spring, 理学研究科
• From Apr. 2020, To Mar. 2021

  Seminar on Mathematical Bioscience IIB

  Fall, 理学研究科
• From Apr. 2020, To Mar. 2021

  Seminar on Mathematical Bioscience IIC

  Spring, 理学研究科
• From Apr. 2020, To Mar. 2021

  Seminar on Mathematical Bioscience IID

  Fall, 理学研究科
• From Apr. 2020, To Mar. 2021

  Advanced Course on Biological Science A

  Spring, 理学研究科
• From Apr. 2021, To Mar. 2022

  Molecular Biology II

  Fall, 理学部
• From Apr. 2021, To Mar. 2022

  Seminar on Mathematical Bioscience IA

  Spring, 理学研究科
• From Apr. 2021, To Mar. 2022

  Seminar on Mathematical Bioscience IB

  Fall, 理学研究科
• From Apr. 2021, To Mar. 2022

  Seminar on Mathematical Bioscience IC

  Spring, 理学研究科
• From Apr. 2021, To Mar. 2022

  Seminar on Mathematical Bioscience ID

  Fall, 理学研究科
• From Apr. 2021, To Mar. 2022

  Seminar on Mathematical Bioscience IIA

  Spring, 理学研究科
• From Apr. 2021, To Mar. 2022

  Seminar on Mathematical Bioscience IIB

  Fall, 理学研究科
• From Apr. 2021, To Mar. 2022

  Seminar on Mathematical Bioscience IIC

  Spring, 理学研究科
• From Apr. 2021, To Mar. 2022

  Seminar on Mathematical Bioscience IID

  Fall, 理学研究科
• From Apr. 2021, To Mar. 2022

  Advanced Course on Biological Science A

  Spring, 理学研究科

Participation in PhD Defense

• 細胞内高次構造体の動態解析のためのマルチスケール分子シミュレーション法の研究

  MURATA YUTAKA, Graduate School of Science, Sub-chief Examiner

  24 Mar. 2025
• Host cell hijacking and remodeling by giant viruses

  RUIXUAN ZHANG, Graduate School of Science, Sub-chief Examiner

  24 Mar. 2025
• 転写凝縮体の構造動態に関する分子シミュレーション研究

  MIZUTANI AZUKI, Graduate School of Science, Sub-chief Examiner

  24 Sep. 2024
• Application of Statistical Learning to Global-Scale Marine Microbial Ecology

  KANEKO HIROTO, Graduate School of Science, Sub-chief Examiner

  25 Mar. 2024
• Unveiling the global diversity and evolution of giant viruses through ocean metagenomics

  Lingjie Meng, Graduate School of Science, Sub-chief Examiner

  25 Mar. 2024
• シロイヌナズナPIP5K1、PIP5K2、PIP5K3遺伝子の機能分化の解析

  WATARI MACHIKO, Graduate School of Science, Sub-chief Examiner

  25 Jul. 2022
• Novel metabarcoding method reveals pronounced seasonality and high turnover rate of Imitervirales in coastal communities

  Florian Prodinger, Graduate School of Science, Sub-chief Examiner

  23 May 2022
• Analysis of conformational space sampled by domain reorientation in linear diubiquitin by paramagnetic NMR

  HOU, XUENI, Graduate School of Science, Sub-chief Examiner

  24 Sep. 2021

Administration

School management (title, position)

• From 01 Oct. 2022, To 30 Sep. 2024

  図書館協議会 協議員
• From 01 Oct. 2022, To 30 Sep. 2024

  図書館協議会オープンアクセス・研究支援特別委員会 委員
• From 01 Oct. 2020, To 30 Sep. 2022

  図書館協議会 協議員
• From 01 Apr. 2021, To 30 Sep. 2022

  オープンアクセス・研究支援特別委員会 委員

Faculty management (title, position)

• From 01 Oct. 2023

  将来構想委員会　委員
• From 20 Jul. 2023

  学術委員会　委員
• From 01 Apr. 2022

  ウイルス・幹細胞システム医生物学共同研究拠点専門委員会　委員
• From 01 May 2021

  動物実験委員会　委員
• From 01 Apr. 2022

  自己点検・評価委員会　委員
• From 01 Apr. 2018, To Mar. 2020

  化学物質管理委員会　委員
• From 01 Apr. 2018

  共同利用機器等委員会　委員
• From 01 Apr. 2018, To 31 Mar. 2018

  （旧ウイルス研）予算委員会　委員
• From 01 Apr. 2019, To 31 Mar. 2020

  （旧ウイルス研）予算委員会　委員長

Academic, Social Contribution

Committee Memberships

• From 2020, To 2026

  Strategic Basic Research Programs, PRESTO, Advisor, JST
• From 2020, To 2020

  Organize Committee of Annual Meeting, Molecular Biology Society of Japan
• From 2012, To 2020

  Strategic Basic Research Programs, CREST, Advisor, JST
• From 2019, To 2019

  Organize Committee of Annual Meeting, Molecular Biology Society of Japan
• From 2017, To 2018

  Committee, Japanese Society for Mathematical Biology
• From 2012, To 2018

  Strategic Basic Research Programs, PRESTO, Advisor, JST
• From 2011, To 2013

  Committee, Japanese Society for Mathematical Biology
• From 2005, To 2006

  Committee, Japanese Society for Mathematical Biology
• From 2001, To 2002

  Committee, Japanese Society for Mathematical Biology