Basic Information

Faculty

• 理学部

Academic Degree

• 修士（理学）(京都大学)
• 博士（理学）(京都大学)

Academic Resume (Graduate Schools)

• 京都大学, 大学院理学研究科博士後期課程生物科学専攻, 修了
• 京都大学, 大学院理学研究科修士課程動物学専攻, 修了

Academic Resume (Undergraduate School/Majors)

• 京都大学, 理学部, 卒業

High School

• High School

  東京都立武蔵高等学校

Research History

• From Apr. 2007, To Present

  Kyoto University, Graduate School of Science, Associate professor
• From Aug. 2004, To Mar. 2007

  Kyoto University, Graduate School of Science, Associate professor
• From Oct. 2005, To Sep. 2006

  米国UCバークレイ, 客員研究員
• From Jul. 1999, To Jul. 2004

  Kyoto University, Graduate School of Science, Assistant professor

ID,URL

• J-Global ID

  201401073844191800

• External link

  http://develop.zool.kyoto-u.ac.jp/

Website(s) (URL(s))

• http://develop.zool.kyoto-u.ac.jp/

researchmap URL

• https://researchmap.jp/yutakasatou

Research

Research Topics, Overview of the research

• Research Topics

  We are studying developmental mechanisms of ascidian embryos and evolution of chordates

• Overview of the research

  Ascidians are the closest relatives of vertebrates, and share many features with vertebrates. On the other hand, the genome of the ascidian is much simpler than those of vertebrates and the embryonic structure is also much simpler. These merits make this animal an ideal system for studying developmental mechanisms of early embryos. In addition, because of it phylogenetic position, understanding of developmental mechanisms of ascidian embryos directly leads to understanding of the origin and evolution of vertebrates.

Research Interests

• 発生
• ホヤ
• ゲノム
• 遺伝子調節ネットワーク
• 遺伝子発現制御
• 脊索動物の起源と進化

Research Areas

• Life sciences, Developmental biology
• Life sciences, Systems genomics
• Life sciences, Genomics

Papers

• Ascidian embryonic cells with properties of neural-crest cells and neuromesodermal progenitors of vertebrates

  Tasuku Ishida; Yutaka Satou

  Nature Ecology & Evolution, 02 Apr. 2024, Peer-reviewed, Last author, Corresponding author

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• A digital twin reproducing gene regulatory network dynamics of early Ciona embryos indicates robust buffers in the network

  Miki Tokuoka; Yutaka Satou

  PLOS Genetics, 27 Sep. 2023, Peer-reviewed, Last author, Corresponding author

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• Regulators specifying cell fate activate cell cycle regulator genes to determine cell numbers in ascidian larval tissues

  Kenji Kobayashi; Miki Tokuoka; Hiroaki Sato; Manami Ariyoshi; Shiori Kawahara; Shigeki Fujiwara; Takeo Kishimoto; Yutaka Satou

  Development, 15 Nov. 2022, Peer-reviewed, Last author

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• Chromosomal Inversion Polymorphisms in Two Sympatric Ascidian Lineages

  Yutaka Satou; Atsuko Sato; Hitoyoshi Yasuo; Yukie Mihirogi; John Bishop; Manabu Fujie; Mayumi Kawamitsu; Kanako Hisata; Noriyuki Satoh

  Genome Biology and Evolution, 08 Jun. 2021, Peer-reviewed, Lead author, Corresponding author

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• The gene regulatory system for specifying germ layers in early embryos of the simple chordate

  Miki Tokuoka; Kazuki Maeda; Kenji Kobayashi; Atsushi Mochizuki; Yutaka Satou

  Science Advances, Jun. 2021, Peer-reviewed, Last author, Corresponding author

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• Two distinct motifs for Zic-r.a drive specific gene expression in two cell lineages

  Izumi Oda-Ishii; Deli Yu; Yutaka Satou

  Development, 01 Jun. 2021, Peer-reviewed, Last author, Corresponding author

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• Foxg specifies sensory neurons in the anterior neural plate border of the ascidian embryo

  Boqi Liu; Yutaka Satou

  Nature Communications, 29 Oct. 2019, Peer-reviewed, Last author, Corresponding author

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• A Nearly Complete Genome of Ciona intestinalis Type A (C. robusta) Reveals the Contribution of Inversion to Chromosomal Evolution in the Genus Ciona

  Yutaka Satou; Ryohei Nakamura; Deli Yu; Reiko Yoshida; Mayuko Hamada; Manabu Fujie; Kanako Hisata; Hiroyuki Takeda; Noriyuki Satoh

  Genome biology and evolution, 01 Nov. 2019, Peer-reviewed, Lead author, Corresponding author

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• The regulatory pathway from genes directly activated by maternal factors to muscle structural genes in ascidian embryos

  Deli Yu; Izumi Oda-Ishii; Atsushi Kubo; Yutaka Satou

  Development, 01 Jan. 2019, Peer-reviewed, Last author, Corresponding author

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• Initiation of the zygotic genetic program in the ascidian embryo

  Oda-Ishii, I.; Satou, Y.

  Semin Cell Dev Biol, Dec. 2018, Peer-reviewed, Last author, Corresponding author

  
• Controlling Cell Fate Specification System by Key Genes Determined from Network Structure

  Kenji Kobayashi; Kazuki Maeda; Miki Tokuoka; Atsushi Mochizuki; Yutaka Satou

  iScience, Jun. 2018, Peer-reviewed, Last author, Corresponding author

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• Distinct regulation of Snail in two muscle lineages of the ascidian embryo achieves temporal coordination of muscle development

  Miki Tokuoka; Kenji Kobayashi; Yutaka Satou

  Development, Jun. 2018, Peer-reviewed, Last author, Corresponding author

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• Differential gene expression along the animal-vegetal axis in the ascidian embryo is maintained by a dual functional protein Foxd

  Shin-ichi Tokuhiro; Miki Tokuoka; Kenji Kobayashi; Atsushi Kubo; Izumi Oda-Ishii; Yutaka Satou

  PLOS GENETICS, May 2017, Peer-reviewed, Last author, Corresponding author

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• Differential temporal control of Foxa.a and Zic-r.b specifies brain versus notochord fate in the ascidian embryo

  Tatsuro Ikeda; Yutaka Satou

  DEVELOPMENT, Jan. 2017, Peer-reviewed, Last author, Corresponding author

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• Tfap2 and Sox1/2/3 cooperatively specify ectodermal fates in ascidian embryos

  Kaoru S. Imai; Hiroki Hikawa; Kenji Kobayashi; Yutaka Satou

  DEVELOPMENT, Jan. 2017, Peer-reviewed, Last author, Corresponding author

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• Antagonism between beta-catenin and Gata. a sequentially segregates the germ layers of ascidian embryos

  Kaoru S. Imai; Clare Hudson; Izumi Oda-Ishii; Hitoyoshi Yasuo; Yutaka Satou

  DEVELOPMENT, Nov. 2016, Peer-reviewed, Last author, Corresponding author

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• A Maternal System Initiating the Zygotic Developmental Program through Combinatorial Repression in the Ascidian Embryo

  Izumi Oda-Ishii; Atsushi Kubo; Willi Kari; Nobuhiro Suzuki; Ute Rothbaecher; Yutaka Satou

  PLOS GENETICS, May 2016, Peer-reviewed, Last author, Corresponding author

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• Genetic pathways for differentiation of the peripheral nervous system in ascidians

  Kana Waki; Kaoru S. Imai; Yutaka Satou

  NATURE COMMUNICATIONS, Oct. 2015, Peer-reviewed, Last author, Corresponding author

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• Sustained Heterozygosity Across a Self-Incompatibility Locus in an Inbred Ascidian

  Yutaka Satou; Kazuko Hirayama; Kaoru Mita; Manabu Fujie; Shota Chiba; Reiko Yoshida; Toshinori Endo; Yasunori Sasakura; Kazuo Inaba; Nori Satoh

  MOLECULAR BIOLOGY AND EVOLUTION, Jan. 2015, Peer-reviewed, Lead author, Corresponding author

  
• A time delay gene circuit is required for palp formation in the ascidian embryo

  Ikeda Tatsuro; Matsuoka Terumi; Satou Yutaka

  Development, 2013, Peer-reviewed, Last author, Corresponding author

  
• Multiple Signaling Pathways Coordinate to Induce a Threshold Response in a Chordate Embryo

  Ohta Naoyuki; Satou Yutaka

  Plos Genetics, 2013, Peer-reviewed, Last author, Corresponding author

  
• Cis-Acting Transcriptional Repression Establishes a Sharp Boundary in Chordate Embryos

  Kaoru S. Imai; Yutaka Daido; Takehiro G. Kusakabe; Yutaka Satou

  SCIENCE, Aug. 2012, Peer-reviewed, Last author, Corresponding author

  
• Genomic cis-regulatory networks in the early Ciona intestinalis embryo

  Atsushi Kubo; Nobuhiro Suzuki; Xuyang Yuan; Kenta Nakai; Nori Satoh; Kaoru S. Imai; Yutaka Satou

  DEVELOPMENT, May 2010, Peer-reviewed, Last author, Corresponding author

  
• Gene regulatory networks underlying the compartmentalization of the Ciona central nervous system

  Kaoru S. Imai; Alberto Stolfi; Michael Levine; Yutaka Satou

  DEVELOPMENT, Jan. 2009, Peer-reviewed, Last author, Corresponding author

  
• Improved genome assembly and evidence-based global gene model set for the chordate Ciona intestinalis: new insight into intron and operon populations

  Yutaka Satou; Katsuhiko Mineta; Michio Ogasawara; Yasunori Sasakura; Eiichi Shoguchi; Keisuke Ueno; Lixy Yamada; Jun Matsumoto; Jessica Wasserscheid; Ken Dewar; Graham B. Wiley; Simone L. Macmil; Bruce A. Roe; Robert W. Zeller; Kenneth E. M. Hastings; Patrick Lemaire; Erika Lindquist; Toshinori Endo; Kohji Hotta; Kazuo Inaba

  GENOME BIOLOGY, 2008, Peer-reviewed, Lead author, Corresponding author

  
• Regulatory blueprint for a chordate embryo

  KS Imai; M Levine; N Satoh; Y Satou

  SCIENCE, May 2006, Peer-reviewed, Last author, Corresponding author

  
• Genomic overview of mRNA 5'-leader trans-splicing in the ascidian Ciona intestinalis

  Yutaka Satou; Makoto Hamaguchi; Keisuke Takeuchi; Kenneth E. M. Hastings; Nori Satoh

  NUCLEIC ACIDS RESEARCH, 2006, Peer-reviewed, Lead author, Corresponding author

  
• Gene expression profiles of transcription factors and signaling molecules in the ascidian embryo: towards a comprehensive understanding of gene networks

  KS Imai; K Hino; K Yagi; N Satoh; Y Satou

  DEVELOPMENT, Aug. 2004, Peer-reviewed, Last author, Corresponding author

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• The ascidian Mesp gene specifies heart precursor cells

  Y Satou; KS Imai; N Satoh

  DEVELOPMENT, Jun. 2004, Peer-reviewed, Lead author, Corresponding author

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• A zinc finger transcription factor, ZicL, is a direct activator of Brachyury in the notochord specification of Ciona intestinalis

  K Yagi; Y Satou; N Satoh

  DEVELOPMENT, Mar. 2004, Peer-reviewed

  
• A Twist-like bHLH gene is a downstream factor of an endogenous FGF and determines mesenchymal fate in the ascidian embryos

  KS Imai; N Satoh; Y Satou

  DEVELOPMENT, Sep. 2003, Peer-reviewed, Last author, Corresponding author

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• The draft genome of Ciona intestinalis: Insights into chordate and vertebrate origins

  P Dehal; Y Satou; RK Campbell; J Chapman; B Degnan; A De Tomaso; B Davidson; A Di Gregorio; M Gelpke; DM Goodstein; N Harafuji; KEM Hastings; Ho, I; K Hotta; W Huang; T Kawashima; P Lemaire; D Martinez; IA Meinertzhagen; S Necula; M Nonaka; N Putnam; S Rash; H Saiga; M Satake; A Terry; L Yamada; HG Wang; S Awazu; K Azumi; J Boore; M Branno; S Chin-bow; R DeSantis; S Doyle; P Francino; DN Keys; S Haga; H Hayashi; K Hino; KS Imai; K Inaba; S Kano; K Kobayashi; M Kobayashi; BI Lee; KW Makabe; C Manohar; G Matassi; M Medina; Y Mochizuki; S Mount; T Morishita; S Miura; A Nakayama; S Nishizaka; H Nomoto; F Ohta; K Oishi; Rigoutsos, I; M Sano; A Sasaki; Y Sasakura; E Shoguchi; T Shin-i; A Spagnuolo; D Stainier; MM Suzuki; O Tassy; N Takatori; M Tokuoka; K Yagi; F Yoshizaki; S Wada; C Zhang; PD Hyatt; F Larimer; C Detter; N Doggett; T Glavina; T Hawkins; P Richardson; S Lucas; Y Kohara; M Levine; N Satoh; DS Rokhsar

  SCIENCE, Dec. 2002, Peer-reviewed, Lead author

  
• An essential role of a FoxD gene in notochord induction in Ciona embryos

  Imai, KS; Satoh, N; Satou, Y

  Development, 15 Jul. 2002, Peer-reviewed, Last author

  
• Multiple functions of a Zic-like gene in the differentiation of notochord, central nervous system and muscle in Ciona savignyi embryos

  KS Imai; Y Satou; N Satoh

  DEVELOPMENT, Jun. 2002, Peer-reviewed, Lead author

  
• Early embryonic expression of FGF4/6/9 gene and its role in the induction of mesenchyme and notochord in Ciona savignyi embryos

  Imai, KS; Satoh, N; Satou, Y

  Development, 01 Apr. 2002, Peer-reviewed, Last author

  
• Early embryonic expression of a LIM-homeobox gene Cs-lhx3 is downstream of beta-catenin and responsible for the endoderm differentiation in Ciona savignyi embryos

  Y Satou; KS Imai; N Satoh

  DEVELOPMENT, Sep. 2001, Peer-reviewed, Lead author, Corresponding author

  
• Gene expression profiles in Ciona intestinalis tailbud embryos

  Satou, Y; Takatori, N; Yamada, L; Mochizuki, Y; Hamaguchi, M; Ishikawa, H; Chiba, S; Imai, K; Kano, S; Murakami, SD; Nakayama, A; Nishino, A; Sasakura, Y; Satoh, G; Shimotori, T; Shin-i, T; Shoguchi, E; Suzuki, MM; Takada, N; Utsumi, N; Yoshida, N; Saiga, H; Kohara, Y; Satoh, N

  Development, 01 Aug. 2001, Peer-reviewed, Lead author

  
• beta-catenin mediates the specification of endoderm cells in ascidian embryos

  K Imai; N Takada; N Satoh; Y Satou

  DEVELOPMENT, Jul. 2000, Peer-reviewed, Last author

  
• BMP signaling is required to form the anterior neural plate border in ascidian embryos

  Boqi Liu; Ximan Ren; Yutaka Satou

  Development Genes and Evolution, Jun. 2023, Peer-reviewed, Last author, Corresponding author

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• Tracing the evolutionary history of blood cells to the unicellular ancestor of animals

  Yosuke Nagahata; Kyoko Masuda; Yuji Nishimura; Tomokatsu Ikawa; Shinpei Kawaoka; Toshio Kitawaki; Yasuhito Nanya; Seishi Ogawa; Hiroshi Suga; Yutaka Satou; Akifumi Takaori-Kondo; Hiroshi Kawamoto

  Blood, 16 Sep. 2022, Peer-reviewed

  
• Protein kinases and protein phosphatases encoded in the Ciona robusta genome

  Miki Tokuoka; Kenji Kobayashi; Patrick Lemaire; Yutaka Satou

  genesis, 09 Mar. 2022, Peer-reviewed, Last author

  
• A Manually Curated Gene Model Set for an Ascidian, Ciona robusta (Ciona intestinalis Type A)

  Yutaka Satou; Miki Tokuoka; Izumi Oda-Ishii; Sinichi Tokuhiro; Tasuku Ishida; Boqi Liu; Yuri Iwamura

  Zoological Science, 01 Mar. 2022, Peer-reviewed, Lead author, Corresponding author

  
• Tbx15/18/22 shares a binding site with Tbx6-r.b to maintain expression of a muscle structural gene in ascidian late embryos

  Deli Yu; Yuri Iwamura; Yutaka Satou; Izumi Oda-Ishii

  Developmental Biology, Mar. 2022, Peer-reviewed, Corresponding author

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• Cell geometry, signal dampening, and a bimodal transcriptional response underlie the spatial precision of an ERK-mediated embryonic induction

  Géraldine Williaume; Sophie de Buyl; Cathy Sirour; Nicolas Haupaix; Rossana Bettoni; Kaoru S. Imai; Yutaka Satou; Geneviève Dupont; Clare Hudson; Hitoyoshi Yasuo

  Developmental Cell, Nov. 2021, Peer-reviewed

  
• Cis-regulatory code for determining the action of Foxd as both an activator and a repressor in ascidian embryos

  Shinichi Tokuhiro; Yutaka Satou

  Developmental Biology, Aug. 2021, Peer-reviewed, Last author, Corresponding author

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• Using linkage logic theory to control dynamics of a gene regulatory network of a chordate embryo.

  Kenji Kobayashi; Kazuki Maeda; Miki Tokuoka; Atsushi Mochizuki; Yutaka Satou

  Scientific reports, 17 Feb. 2021, Peer-reviewed, Last author, Corresponding author

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• A single-cell analysis of the molecular lineage of chordate embryogenesis

  Tengjiao Zhang; Yichi Xu; Kaoru Imai; Teng Fei; Guilin Wang; Bo Dong; Tianwei Yu; Yutaka Satou; Weiyang Shi; Zhirong Bao

  Science Advances, Nov. 2020, Peer-reviewed

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• The genetic program to specify ectodermal cells in ascidian embryos

  Boqi Liu; Yutaka Satou

  Development, Growth & Differentiation, 04 Mar. 2020, Peer-reviewed, Last author, Corresponding author

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• Gata is ubiquitously required for the earliest zygotic gene transcription in the ascidian embryo

  Kaoru S. Imai; Kenji Kobayashi; Willi Kari; Ute Rothbächer; Naoki Ookubo; Izumi Oda-Ishii; Yutaka Satou

  Developmental Biology, Nov. 2019, Peer-reviewed, Last author, Corresponding author

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• Dynamics of two key maternal factors that initiate zygotic regulatory programs in ascidian embryos

  Izumi Oda-Ishii; Tetsuya Abe; Yutaka Satou

  Developmental Biology, May 2018, Peer-reviewed, Last author, Corresponding author

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• ANISEED 2017: extending the integrated ascidian database to the exploration and evolutionary comparison of genome-scale datasets

  Brozovic M; Dantec C; Dardaillon J; Dauga D; Faure E; Gineste M; Louis A; Naville M; Nitta K. R; Piette J; Reeves W; Scornavacca C; Simion P; Vincentelli R; Bellec M; Aicha S. B; Fagotto M; Gueroult-Bellone M; Haeussler M; Jacox E; Lowe E. K; Mendez M; Roberge A; Stolfi A; Yokomori R; Brown C. T; Cambillau C; Christiaen L; Delsuc F; Douzery E; Dumollard R; Kusakabe T; Nakai K; Nishida H; Satou Y; Swalla B; Veeman M; Volff J. N; Lemaire P

  Nucleic Acids Res, 2017, Peer-reviewed

  
• Dysregulation of a potassium channel, THIK-1, targeted by caspase-8 accelerates cell shrinkage

  Kazuhiro Sakamaki; Takahiro M. Ishii; Toshiya Sakata; Kiwamu Takemoto; Chiyo Takagi; Ayako Takeuchi; Ryo Morishita; Hirotaka Takahashi; Akira Nozawa; Hajime Shinoda; Kumiko Chiba; Haruyo Sugimoto; Akiko Saito; Shuhei Tamate; Yutaka Satou; Sang-Kee Jung; Satoshi Matsuoka; Koji Koyamada; Tatsuya Sawasaki; Takeharu Nagai; Naoto Ueno

  Biochimica et Biophysica Acta (BBA) - Molecular Cell Research, Nov. 2016, Peer-reviewed

  
• A Boolean Function for Neural Induction Reveals a Critical Role of Direct Intercellular Interactions in Patterning the Ectoderm of the Ascidian Embryo

  Naoyuki Ohta; Kana Waki; Atsushi Mochizuki; Yutaka Satou

  PLOS COMPUTATIONAL BIOLOGY, Dec. 2015, Peer-reviewed, Last author, Corresponding author

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• A pipeline for the systematic identification of non-redundant full-ORF cDNAs for polymorphic and evolutionary divergent genomes: Application to the ascidian Ciona intestinalis

  Michael J. Gilchrist; Daniel Sobral; Pierre Khoueiry; Fabrice Daian; Batiste Laporte; Ilya Patrushev; Jun Matsumoto; Ken Dewar; Kenneth E. M. Hastings; Yutaka Satou; Patrick Lemaire; Ute Rothbaecher

  DEVELOPMENTAL BIOLOGY, Aug. 2015, Peer-reviewed

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• Gene regulatory systems that control gene expression in the Ciona embryo

  Yutaka Satou; Kaoru S. Imai

  PROCEEDINGS OF THE JAPAN ACADEMY SERIES B-PHYSICAL AND BIOLOGICAL SCIENCES, Feb. 2015, Peer-reviewed, Lead author, Corresponding author

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• Guidelines for the Nomenclature of Genetic Elements in Tunicate Genomes

  Alberto Stolfi; Yasunori Sasakura; Domitille Chalopin; Yutaka Satou; Lionel Christiaen; Christelle Dantec; Toshinori Endo; Magali Naville; Hiroki Nishida; Billie J. Swalla; Jean-Nicolas Volff; Ayelet Voskoboynik; Delphine Dauga; Patrick Lemaire

  GENESIS, Jan. 2015, Peer-reviewed

  
• The Apoptotic Initiator Caspase-8: Its Functional Ubiquity and Genetic Diversity during Animal Evolution

  Kazuhiro Sakamaki; Kouhei Shimizu; Hiroaki Iwata; Kenichiro Imai; Yutaka Satou; Noriko Funayama; Masami Nozaki; Mamiko Yajima; Osamu Nishimura; Mayura Higuchi; Kumiko Chiba; Michi Yoshimoto; Haruna Kimura; Andrew Y. Gracey; Takashi Shimizu; Kentaro Tomii; Osamu Gotoh; Koji Akasaka; Tatsuya Sawasaki; David J. Miller

  MOLECULAR BIOLOGY AND EVOLUTION, Dec. 2014, Peer-reviewed

  
• Differential Gene Expression in Notochord and Nerve Cord Fate Segregation in the Ciona intestinalis Embryo

  Kenji Kobayashi; Lixy Yamada; Yutaka Satou; Nori Satoh

  GENESIS, Sep. 2013, Peer-reviewed

  
• Transcriptome dynamics in early embryos of the ascidian, Ciona intestinalis

  Matsuoka Terumi; Ikeda Tatsuro; Fujimaki Kotaro; Satou Yutaka

  Developmental Biology, 2013, Peer-reviewed, Last author, Corresponding author

  
• Blood System Formation in the Urochordate Ciona intestinalis Requires the Variable Receptor vCRL1

  Felix Sommer; Satoko Awazu; Friederike Anton-Erxleben; Di Jiang; Alexander V. Klimovich; Boris V. Klimovich; Marina P. Samoilovich; Yutaka Satou; Margret Kruess; Christoph Gelhaus; Ulrich Kuern; Thomas C. G. Bosch; Konstantin Khalturin

  MOLECULAR BIOLOGY AND EVOLUTION, Oct. 2012, Peer-reviewed

  
• A genomic overview of short genetic variations in a basal chordate, Ciona intestinalis

  Yutaka Satou; Tadasu Shin-i; Yuji Kohara; Nori Satoh; Shota Chiba

  BMC GENOMICS, May 2012, Peer-reviewed, Lead author, Corresponding author

  
• High-throughput protein expression screening and purification in Escherichia coli

  Renaud Vincentelli; Agnes Cimino; Arie Geerlof; Atsushi Kubo; Yutaka Satou; Christian Cambillau

  METHODS, Sep. 2011, Peer-reviewed

  
• Blastema induction in aneurogenic state and Prrx-1 regulation by MMPs and FGFs in Ambystoma mexicanum limb regeneration

  Akira Satoh; Aki Makanae; Ayako Hirata; Yutaka Satou

  DEVELOPMENTAL BIOLOGY, Jul. 2011, Peer-reviewed, Last author

  
• Expression of neuropeptide- and hormone-encoding genes in the Ciona intestinalis larval brain

  Mayuko Hamada; Naoki Shimozono; Naoyuki Ohta; Yutaka Satou; Takeo Horie; Tsuyoshi Kawada; Honoo Satake; Yasunori Sasakura; Nori Satoh

  DEVELOPMENTAL BIOLOGY, Apr. 2011, Peer-reviewed

  
• CIPRO 2.5: Ciona intestinalis protein database, a unique integrated repository of large-scale omics data, bioinformatic analyses and curated annotation, with user rating and reviewing functionality

  Toshinori Endo; Keisuke Ueno; Kouki Yonezawa; Katsuhiko Mineta; Kohji Hotta; Yutaka Satou; Lixy Yamada; Michio Ogasawara; Hiroki Takahashi; Ayako Nakajima; Mia Nakachi; Mamoru Nomura; Junko Yaguchi; Yasunori Sasakura; Chisato Yamasaki; Miho Sera; Akiyasu C. Yoshizawa; Tadashi Imanishi; Hisaaki Taniguchi; Kazuo Inaba

  NUCLEIC ACIDS RESEARCH, Jan. 2011, Peer-reviewed

  
• The ANISEED database: Digital representation, formalization, and elucidation of a chordate developmental program

  Olivier Tassy; Delphine Dauga; Fabrice Daian; Daniel Sobral; Francois Robin; Pierre Khoueiry; David Salgado; Vanessa Fox; Daniele Caillol; Renaud Schiappa; Baptiste Laporte; Anne Rios; Guillaume Luxardi; Takehiro Kusakabe; Jean-Stephane Joly; Sebastien Darras; Lionel Christiaen; Magali Contensin; Helene Auger; Clement Lamy; Clare Hudson; Ute Rothbaecher; Michael J. Gilchrist; Kazuhiro W. Makabe; Kohji Hotta; Shigeki Fujiwara; Nori Satoh; Yutaka Satou; Patrick Lemaire

  GENOME RESEARCH, Oct. 2010, Peer-reviewed

  
• High-throughput sequence analysis of Ciona intestinalis SL trans-spliced mRNAs: Alternative expression modes and gene function correlates

  Jun Matsumoto; Ken Dewar; Jessica Wasserscheid; Graham B. Wiley; Simone L. Macmil; Bruce A. Roe; Robert W. Zeller; Yutaka Satou; Kenneth E. M. Hastings

  GENOME RESEARCH, May 2010, Peer-reviewed

  
• Gene-regulatory networks in the Ciona embryos.

  Kubo A; Imai KS; Satou Y

  Briefings in functional genomics & proteomics, Jul. 2009, Peer-reviewed, Last author, Corresponding author

  
• Gene regulatory networks in the early ascidian embryo

  Yutaka Satou; Nori Satoh; Kaoru S. Imai

  BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS, Apr. 2009, Peer-reviewed, Lead author, Corresponding author

  
• Caspases: evolutionary aspects of their functions in vertebrates

  K. Sakamaki; Y. Satou

  JOURNAL OF FISH BIOLOGY, Mar. 2009, Peer-reviewed

  
• M-Ras evolved independently of R-Ras and its neural function is conserved between mammalian and ascidian, which lacks classical Ras

  Etsuko Keduka; Ai Kaiho; Mayuko Hamada; Haruko Watanabe-Takano; Kazunori Takano; Michio Ogasawara; Yutaka Satou; Nori Satoh; Takeshi Endo

  Gene, 15 Jan. 2009, Peer-reviewed

  
• A cDNA resource for the cephalochordate amphioxus Branchiostoma floridae

  Jr-Kai Yu; Ming-Chih Wang; Tadasu Shin-; Yuji Kohara; Linda Z. Holland; Noriyuki Satoh; Yutaka Satou

  DEVELOPMENT GENES AND EVOLUTION, Dec. 2008, Peer-reviewed, Last author

  
• Regulatory genes in the ancestral chordate genomes

  Yutaka Satou; Shuichi Wada; Yasunori Sasakura; Nori Satoh

  DEVELOPMENT GENES AND EVOLUTION, Dec. 2008, Peer-reviewed, Lead author, Corresponding author

  
• The amphioxus genome illuminates vertebrate origins and cephalochordate biology

  Linda Z Holland; Ricard Albalat; Kaoru Azumi; Elia Benito-Gutiérrez; Matthew J Blow; Marianne Bronner-Fraser; Frederic Brunet; Thomas Butts; Simona Candiani; Larry J Dishaw; David E K Ferrier; Jordi Garcia-Fernàndez; Jeremy J Gibson-Brown; Carmela Gissi; Adam Godzik; Finn Hallböök; Dan Hirose; Kazuyoshi Hosomichi; Tetsuro Ikuta; Hidetoshi Inoko; Masanori Kasahara; Jun Kasamatsu; Takeshi Kawashima; Ayuko Kimura; Masaaki Kobayashi; Zbynek Kozmik; Kaoru Kubokawa; Vincent Laudet; Gary W Litman; Alice C McHardy; Daniel Meulemans; Masaru Nonaka; Robert P Olinski; Zeev Pancer; Len A Pennacchio; Mario Pestarino; Jonathan P Rast; Isidore Rigoutsos; Marc Robinson-Rechavi; Graeme Roch; Hidetoshi Saiga; Yasunori Sasakura; Masanobu Satake; Yutaka Satou; Michael Schubert; Nancy Sherwood; Takashi Shiina; Naohito Takatori; Javier Tello; Pavel Vopalensky; Shuichi Wada; Anlong Xu; Yuzhen Ye; Keita Yoshida; Fumiko Yoshizaki; Jr-Kai Yu; Qing Zhang; Christian M Zmasek; Pieter J de Jong; Kazutoyo Osoegawa; Nicholas H Putnam; Daniel S Rokhsar; Noriyuki Satoh; Peter W H Holland

  Genome research, Jul. 2008, Peer-reviewed

  
• The amphioxus genome and the evolution of the chordate karyotype

  Nicholas H. Putnam; Thomas Butts; David E. K. Ferrier; Rebecca F. Furlong; Uffe Hellsten; Takeshi Kawashima; Marc Robinson-Rechavi; Eiichi Shoguchi; Astrid Terry; Jr-Kai Yu; Elia Benito-Gutierrez; Inna Dubchak; Jordi Garcia-Fernandez; Jeremy J. Gibson-Brown; Igor V. Grigoriev; Amy C. Horton; Pieter J. de Jong; Jerzy Jurka; Vladimir V. Kapitonov; Yuji Kohara; Yoko Kuroki; Erika Lindquist; Susan Lucas; Kazutoyo Osoegawa; Len A. Pennacchio; Asaf A. Salamov; Yutaka Satou; Tatjana Sauka-Spengler; Jeremy Schmutz; Tadasu Shin-I; Atsushi Toyoda; Marianne Bronner-Fraser; Asao Fujiyama; Linda Z. Holland; Peter W. H. Holland; Nori Satoh; Daniel S. Rokhsar

  NATURE, Jun. 2008, Peer-reviewed

  
• Gene expression profile during the life cycle of the urochordate Ciona intestinalis

  Kaoru Azumi; Sorin V. Sabau; Manabu Fujie; Takeshi Usami; Ryo Koyanagi; Takeshi Kawashima; Shigeki Fujiwara; Michio Ogasawara; Masanobu Satake; Masaru Nonaka; Hong-Gang Wang; Yutaka Satou; Nori Satoh

  DEVELOPMENTAL BIOLOGY, Aug. 2007, Peer-reviewed

  
• Analysis of large scale expression sequenced tags (ESTs) from the anural ascidian, Molgula tectiformis

  Fuki Gyoja; Yutaka Satou; Tadasu Shin-i; Yuji Kohara; Billie J. Swalla; Nori Satoh

  DEVELOPMENTAL BIOLOGY, Jul. 2007, Peer-reviewed

  
• Conserved function of caspase-8 in apoptosis during bony fish evolution

  Shin-ichi Sakata; YiLin Yan; Yutaka Satou; Akihiro Momoi; Phuong Ngo-Hazelett; Masami Nozaki; Makoto Furutani-Seiki; John H. Postlethwait; Shin Yonehara; Kazuhiro Sakamaki

  GENE, Jul. 2007, Peer-reviewed

  
• The evolutionary conservation of the core components necessary for the extrinsic apoptotic signaling pathway, in Medaka fish

  Kazuhiro Sakamaki; Masami Nozaki; Katsuya Kominami; Yutaka Satou

  BMC GENOMICS, Jun. 2007, Peer-reviewed

  
• Axial patterning in cephalochordates and the evolution of the organizer

  Jr-Kai Yu; Yutaka Satou; Nicholas D. Holland; Tadasu Shin-; Yuji Kohara; Noriyuki Satoh; Marianne Bronner-Fraser; Linda Z. Holland

  NATURE, Feb. 2007, Peer-reviewed

  
• Further EST analysis of endocrine genes that are preferentially expressed in the neural complex of Ciona intestinalis: Receptor and enzyme genes associated with endocrine system in the neural complex

  Toshio Sekiguchi; Takeshi Kawashima; Yutaka Satou; Nori Satoh

  GENERAL AND COMPARATIVE ENDOCRINOLOGY, Jan. 2007, Peer-reviewed

  
• Gene regulatory networks for the development and evolution of the chordate heart

  Yutaka Satou; Nori Satoh

  GENES & DEVELOPMENT, Oct. 2006, Peer-reviewed

  
• Cloning and characterization of an ascidian homolog of the human 8-oxoguanine DNA glycosylase (Ogg1) that is involved in the repair of 8-oxo-7,8-dihydroguanine in DNA in Ciona intestinalis

  G. Jin; Q. -M. Zhang; Y. Satou; N. Satoh; H. Kasai; S. Yonei

  INTERNATIONAL JOURNAL OF RADIATION BIOLOGY, Apr. 2006, Peer-reviewed

  
• Systematic analysis of embryonic expression profiles of zinc finger genes in Ciona intestinalis

  K Miwata; T Chiba; R Horii; L Yamada; A Kubo; D Miyamura; N Satoh; Y Satou

  DEVELOPMENTAL BIOLOGY, Apr. 2006, Peer-reviewed, Last author, Corresponding author

  
• Chromosomal mapping of 170 BAC clones in the ascidian Gona intestinalis

  E Shoguchi; T Kawashima; Y Satou; M Hamaguchi; T Sin-I; Y Kohara; N Putnam; DS Rokhsar; N Satoh

  GENOME RESEARCH, Feb. 2006, Peer-reviewed, Lead author

  
• [Recent advances in developmental genomics of the ascidian Ciona intestinalis].

  Kawashima T; Shoguchi E; Satou Y; Satoh N

  Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme, Dec. 2005, Peer-reviewed

  
• A bHLH transcription factor gene, Twist-like1, is essential for the formation of mesodermal tissues of Ciona juveniles

  M Tokuoka; N Satoh; Y Satou

  DEVELOPMENTAL BIOLOGY, Dec. 2005, Peer-reviewed, Last author

  
• The cell death machinery controlled by Bax and Bcl-XL is evolutionarily conserved in Ciona intestinalis

  N Takada; H Yamaguchi; K Shida; D Terajima; Y Satou; A Kasuya; N Satoh; M Satake; HG Wang

  APOPTOSIS, Dec. 2005, Peer-reviewed

  
• Cataloging transcription factor and major signaling molecule genes for functional genomic studies in Ciona intestinalis

  Y Satou; N Satoh

  DEVELOPMENT GENES AND EVOLUTION, Nov. 2005, Peer-reviewed, Lead author, Corresponding author

  
• An integrated database of the ascidian, Ciona intestinalis: Towards functional genomics

  Yutaka Satou; Takeshi Kawashima; Eiichi Shoguchi; Akie Nakayama; Nori Satoh

  ZOOLOGICAL SCIENCE, Aug. 2005, Peer-reviewed, Lead author, Corresponding author

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• Assembly of polymorphic genomes: Algorithms and application to Ciona savignyi

  JP Vinson; DB Jaffe; K O'Neill; EK Karlsson; N Stange-Thomann; S Anderson; JP Mesirov; N Satoh; Y Satou; C Nusbaum; B Birren; JE Galagan; ES Lander

  GENOME RESEARCH, Aug. 2005, Peer-reviewed

  
• Comprehensive analysis of the ascidian genome reveals novel insights into the molecular evolution of ion channel genes

  Y Okamura; A Nishino; Y Murata; K Nakajo; H Iwasaki; Y Ohtsuka; M Tanaka-Kunishima; N Takahashi; Y Hara; T Yoshida; M Nishida; H Okado; H Watari; IA Meinertzhagen; N Satoh; K Takahashi; Y Satou; Y Okada; Y Mori

  PHYSIOLOGICAL GENOMICS, Aug. 2005, Peer-reviewed

  
• Microarray analysis of localization of maternal transcripts in eggs and early embryos of the ascidian, Ciona intestinalis

  L Yamada; K Kobayashi; Y Satou; N Satoh

  DEVELOPMENTAL BIOLOGY, Aug. 2005, Peer-reviewed

  
• A Genome-Wide Survey of Genes for Enzymes Involved in Pigment Synthesis in an Ascidian, Ciona intestinalis

  Keisuke Takeuchi; Yutaka Satou; Hiroaki Yamamoto; Nori Satoh

  Zoological Science, Jul. 2005

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• Ci-Tbx6b and Ci-Tbx6c are key mediators of the maternal effect gene Ci-macho1 in muscle cell differentiation in Ciona intestinalis embryos

  K Yagi; N Takatori; Y Satou; N Satoh

  DEVELOPMENTAL BIOLOGY, Jun. 2005, Peer-reviewed

  
• Dynamic changes in developmental gene expression in the basal chordate Ciona intestinalis

  T Kawashima; Y Satou; SD Murakami; N Satoh

  DEVELOPMENT GROWTH & DIFFERENTIATION, Apr. 2005, Peer-reviewed, Lead author

  
• A saturation screen for cis-acting regulatory DNA in the Hox genes of Ciona intestinalis

  DN Keys; BI Lee; A Di Gregorio; N Harafuji; JC Detter; M Wang; O Kahsai; S Ahn; C Zhang; SA Doyle; N Satoh; Y Satou; H Saiga; AT Christian; DS Rokhsar; TL Hawkins; M Levine; PM Richardson

  PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, Jan. 2005, Peer-reviewed

  
• Tachykinin and tachykinin receptor of an ascidian, Ciona intestinalis - Evolutionary origin of the vertebrate tachykinin family

  H Satake; M Ogasawara; T Kawada; K Masuda; M Aoyama; H Minakata; T Chiba; H Metoki; Y Satou; N Satoh

  JOURNAL OF BIOLOGICAL CHEMISTRY, Dec. 2004, Peer-reviewed

  
• Identification of downstream genes of the ascidian muscle determinant gene Ci-macho1

  K Yagi; N Satoh; Y Satou

  DEVELOPMENTAL BIOLOGY, Oct. 2004, Peer-reviewed, Last author

  
• Identification of transcripts expressed preferentially in Hemocytes of Ciona intestinalis that can be used as molecular markers

  T Wakoh; M Ikeda; R Uchino; K Azumi; M Nonaka; Y Kohara; H Metoki; Y Satou; N Satoh; M Satake

  DNA RESEARCH, Oct. 2004, Peer-reviewed

  
• Three distinct lineages of mesenchymal cells in Ciona intestinalis embryos demonstrated by specific gene expression

  M Tokuoka; KS Imai; Y Satou; N Satoh

  DEVELOPMENTAL BIOLOGY, Oct. 2004, Peer-reviewed

  
• T-box genes in the ascidian Ciona intestinalis: Characterization of cDNAs and spatial expression

  N Takatori; K Hotta; Y Mochizuki; G Satoh; Y Mitani; N Satoh; Y Satou; H Takahashi

  DEVELOPMENTAL DYNAMICS, Aug. 2004, Peer-reviewed

  
• Fluorescent in situ hybridization to ascidian chromosomes

  B Shoguchi; T Ikuta; F Yoshizaki; Y Satou; N Satoh; K Asano; H Saiga; T Nishikata

  ZOOLOGICAL SCIENCE, Feb. 2004, Peer-reviewed

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• The evolutionary origin of animal cellulose synthase

  K Nakashima; L Yamada; Y Satou; J Azuma; N Satoh

  DEVELOPMENT GENES AND EVOLUTION, Feb. 2004, Peer-reviewed

  
• Ascidian larva reveals ancient origin of vertebrate-skeletal-muscle troponin I characteristics in chordate locomotory muscle

  CL Cleto; AE Vandenberghe; DW MacLean; P Pannunzio; C Tortorelli; TH Meedel; Y Satou; N Satoh; KEM Hastings

  MOLECULAR BIOLOGY AND EVOLUTION, Dec. 2003, Peer-reviewed

  
• Morpholino-based gene knockdown screen of novel genes with developmental function in Ciona intestinalis

  L Yamada; E Shoguchi; S Wada; K Kobayashi; Y Mochizuki; Y Satou; N Satoh

  DEVELOPMENT, Dec. 2003, Peer-reviewed

  
• Construction of a cDNA microarray derived from the ascidian Ciona intestinalis

  K Azumi; H Takahashi; Y Miki; M Fujie; T Usami; H Ishikawa; A Kitayama; Y Satou; N Ueno; N Satoh

  ZOOLOGICAL SCIENCE, Oct. 2003, Peer-reviewed

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• Expression of FoxE and FoxQ genes in the endostyle of Ciona intestinalis

  M Ogasawara; Y Satou

  DEVELOPMENT GENES AND EVOLUTION, Aug. 2003, Peer-reviewed, Last author

  
• Novel endostyle-specific genes in the ascidian Ciona intestinalis

  A Sasaki; Y Miyamoto; Y Satou; N Satoh; M Ogasawara

  ZOOLOGICAL SCIENCE, Aug. 2003, Peer-reviewed

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• Ciona intestinalis: an emerging model for whole-genome analyses

  N Satoh; Y Satou; B Davidson; M Levine

  TRENDS IN GENETICS, Jul. 2003, Peer-reviewed

  
• A genomewide survey of developmentally relevant genes in Ciona intestinalis - I. Genes for bHLH transcription factors

  Y Satou; KS Imai; M Levine; Y Kohara; D Rokhsar; N Satoh

  DEVELOPMENT GENES AND EVOLUTION, Jun. 2003, Peer-reviewed, Lead author, Corresponding author

  
• A genomewide survey of developmentally relevant genes in Ciona intestinalis - II. Genes for homeobox transcription factors

  S Wada; M Tokuoka; E Shoguchi; K Kobayashi; A Di Gregorio; A Spagnuolo; M Branno; Y Kohara; D Rokhsar; M Levine; H Saiga; N Satoh; Y Satou

  DEVELOPMENT GENES AND EVOLUTION, Jun. 2003, Peer-reviewed, Last author

  
• A genomewide survey of developmentally relevant genes in Ciona intestinalis - III. Genes for Fox, ETS, nuclear receptors and NF kappa B

  K Yagi; Y Satou; F Mazet; SM Shimeld; B Degnan; D Rokhsar; M Levine; Y Kohara; N Satoh

  DEVELOPMENT GENES AND EVOLUTION, Jun. 2003, Peer-reviewed, Lead author, Corresponding author

  
• A genomewide survey of developmentally relevant genes in Ciona intestinalis - IV. Genes for HMG transcriptional regulators, bZip and GATA/Gli/Zic/Snail

  L Yamada; K Kobayashi; B Degnan; N Satoh; Y Satou

  DEVELOPMENT GENES AND EVOLUTION, Jun. 2003, Peer-reviewed, Last author, Corresponding author

  
• A genomewide survey of developmentally relevant genes in Ciona intestinalis - IX. Genes for muscle structural proteins

  S Chiba; S Awazu; M Itoh; ST Chin-Bow; N Satoh; Y Satou; KEM Hastings

  DEVELOPMENT GENES AND EVOLUTION, Jun. 2003, Peer-reviewed

  
• A genomewide survey of developmentally relevant genes in Ciona intestinalis - V. Genes for receptor tyrosine kinase pathway and Notch signaling pathway

  Y Satou; Y Sasakura; L Yamada; KS Imai; N Satoh; B Degnan

  DEVELOPMENT GENES AND EVOLUTION, Jun. 2003, Peer-reviewed, Lead author, Corresponding author

  
• A genomewide survey of developmentally relevant genes in Ciona intestinalis - VI. Genes for Wnt, TGF beta, Hedgehog and JAK/STAT signaling pathways

  K Hino; Y Satou; K Yagi; N Satoh

  DEVELOPMENT GENES AND EVOLUTION, Jun. 2003, Peer-reviewed, Lead author

  
• A genomewide survey of developmentally relevant genes in Ciona intestinalis - VII. Molecules involved in the regulation of cell polarity and actin dynamics

  Y Sasakura; L Yamada; N Takatori; Y Satou; N Satoh

  DEVELOPMENT GENES AND EVOLUTION, Jun. 2003, Peer-reviewed

  
• A genomewide survey of developmentally relevant genes in Ciona intestinalis - VIII. Genes for PI3K signaling and cell cycle

  T Kawashima; M Tokuoka; S Awazu; N Satoh; Y Satou

  DEVELOPMENT GENES AND EVOLUTION, Jun. 2003, Peer-reviewed, Last author

  
• A genomewide survey of developmentally relevant genes in Ciona intestinalis - X. Genes for cell junctions and extracellular matrix

  Y Sasakura; E Shoguchi; N Takatori; S Wada; IA Meinertzhagen; Y Satou; N Satoh

  DEVELOPMENT GENES AND EVOLUTION, Jun. 2003, Peer-reviewed

  
• Genomewide surveys of developmentally relevant genes in Ciona intestinalis

  Y Satou; N Satoh

  DEVELOPMENT GENES AND EVOLUTION, Jun. 2003, Peer-reviewed

  
• Large scale EST analyses in Ciona intestinalis - Its application as Northern blot analyses

  Y Satou; T Kawashima; Y Kohara; N Satoh

  DEVELOPMENT GENES AND EVOLUTION, Jun. 2003, Peer-reviewed, Lead author, Corresponding author

  
• Large-scale characterization of genes specific to the larval nervous system in the ascidian Ciona intestinalis

  Y Mochizuki; Y Satou; N Satoh

  GENESIS, May 2003, Peer-reviewed

  
• Hemocytes of Ciona intestinalis express multiple genes involved in innate immune host defense

  K Shida; D Terajima; R Uchino; S Ikawa; M Ikeda; K Asano; T Watanabe; K Azumi; M Nonaka; Y Satou; N Satoh; M Satake; Y Kawazoe; A Kasuya

  BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, Mar. 2003, Peer-reviewed

  
• Retinoic acid affects gene expression and morphogenesis without upregulating the retinoic acid receptor in the ascidian Ciona intestinalis

  K Nagatomo; T Ishibashi; Y Satou; N Satoh; S Fujiwara

  MECHANISMS OF DEVELOPMENT, Mar. 2003, Peer-reviewed

  
• The invertebrate ancestry of endocannabinoid signalling: an orthologue of vertebrate cannabinoid receptors in the urochordate Ciona intestinalis

  MR Elphick; Y Satou; N Satoh

  GENE, Jan. 2003, Peer-reviewed

  
• Region specific gene expressions in the central nervous system of the ascidian embryo

  Kaoru S. Imai; Nori Satoh; Yutaka Satou

  MECHANISMS OF DEVELOPMENT, Dec. 2002, Peer-reviewed, Last author

  
• Fgf genes in the basal chordate Ciona intestinalis

  Y Satou; KS Imai; N Satoh

  DEVELOPMENT GENES AND EVOLUTION, Oct. 2002, Peer-reviewed, Lead author, Corresponding author

  
• Further characterization of genes expressed during Ciona intestinalis metamorphosis

  A Nakayama; Y Satou; N Satoh

  DIFFERENTIATION, Oct. 2002, Peer-reviewed

  
• A cDNA resource from the basal chordate Ciona intestinalis

  Y Satou; L Yamada; Y Mochizuki; N Takatori; T Kawashima; A Sasaki; M Hamaguchi; S Awazu; K Yagi; Y Sasakura; A Nakayama; H Ishikawa; K Inaba; N Satoh

  GENESIS, Aug. 2002, Peer-reviewed, Lead author

  
• Construction of BAC libraries derived from the ascidian Ciona intestinalis

  M Kobayashi; M Matsuda; S Asakawa; N Shimizu; Y Nagahama; Y Satou; N Satoh

  GENES & GENETIC SYSTEMS, Aug. 2002, Peer-reviewed

  
• EST analysis of gene expression in testis of the ascidian Ciona intestinalis

  K Inaba; P Padma; Y Satouh; T Shin-I; Y Kohara; N Satoh; Y Satou

  MOLECULAR REPRODUCTION AND DEVELOPMENT, Aug. 2002, Peer-reviewed, Last author

  
• Expression of hedgehog genes in Ciona intestinalis embryos

  N Takatori; Y Satou; N Satoh

  MECHANISMS OF DEVELOPMENT, Aug. 2002, Peer-reviewed

  
• Gene expression profiles in young adult Ciona intestinalis

  M Ogasawara; A Sasaki; H Metoki; T Shin-i; Y Kohara; N Satoh; Y Satou

  DEVELOPMENT GENES AND EVOLUTION, May 2002, Peer-reviewed, Last author

  
• Ciona intestinalis cDNA projects: expressed sequence tag analyses and gene expression profiles during embryogenesis

  Y Satou; N Takatori; S Fujiwara; T Nishikata; H Saiga; T Kusakabe; T Shin-i; Y Kohara; N Satoh

  GENE, Apr. 2002, Peer-reviewed, Lead author

  
• Gene expression profiles in Ciona intestinalis cleavage-stage embryos

  S Fujiwara; Y Maeda; T Shin-I; Y Kohara; N Takatori; Y Satou; N Satoh

  MECHANISMS OF DEVELOPMENT, Mar. 2002, Peer-reviewed

  
• macho-1-related genes in Ciona embryos

  Y Satou; K Yagi; KS Imai; L Yamada; H Nishida; N Satoh

  DEVELOPMENT GENES AND EVOLUTION, Mar. 2002, Peer-reviewed, Lead author, Corresponding author

  
• Gene expression profiles in tadpole larvae of Ciona intestinalis

  T Kusakabe; R Yoshida; Kawakami, I; R Kusakabe; Y Mochizuki; L Yamada; T Shin-i; Y Kohara; N Satoh; M Tsuda; Y Satou

  DEVELOPMENTAL BIOLOGY, Feb. 2002, Peer-reviewed, Last author

  
• Profiles of maternally expressed genes in fertilized eggs of Ciona intestinalis

  T Nishikata; L Yamada; Y Mochizuki; Y Satou; T Shin-i; Y Kohara; N Satoh

  DEVELOPMENTAL BIOLOGY, Oct. 2001, Peer-reviewed

  
• Ci-opsin1, a vertebrate-type opsin gene, expressed in the larval ocellus of the ascidian Ciona intestinalis

  T Kusakabe; R Kusakabe; Kawakami, I; Y Satou; N Satoh; M Tsuda

  FEBS LETTERS, Sep. 2001, Peer-reviewed

  
• Action of morpholinos in Ciona embryos

  Y Satou; KS Imai; N Satoh

  GENESIS, Jul. 2001, Peer-reviewed, Lead author, Corresponding author

  
• Brachyury (T) gene expression and notochord development in Oikopleura longicauda (Appendicularia, Urochordata)

  A Nishino; Y Satou; M Morisawa; N Satoh

  DEVELOPMENT GENES AND EVOLUTION, May 2001, Peer-reviewed

  
• Isolation and characterization of genes that are expressed during Ciona intestinalis metamorphosis

  A Nakayama; Y Satou; N Satoh

  DEVELOPMENT GENES AND EVOLUTION, Apr. 2001, Peer-reviewed

  
• Characterization of Brachyury-downstream notochord genes in the Ciona intestinalis embryo

  K Hotta; H Takahashi; T Asakura; B Saitoh; N Takatori; Y Satou; N Satoh

  DEVELOPMENTAL BIOLOGY, Aug. 2000, Peer-reviewed

  
• Muscle actin genes and muscle cells in the appendicularian, Oikopleura longicauda: Phylogenetic relationships among muscle tissues in the Urochordates

  A Nishino; Y Satou; M Morisawa; N Satoh

  JOURNAL OF EXPERIMENTAL ZOOLOGY, Aug. 2000, Peer-reviewed

  
• Developmental gene activities in ascidian embryos

  Y Satou; N Satoh

  CURRENT OPINION IN GENETICS & DEVELOPMENT, Oct. 1999, Peer-reviewed, Lead author

  
• posterior end mark 3 (pem-3), an ascidian maternally expressed gene with localized mRNA encodes a protein with Caenorhabditis elegans MEX-3-like KH domains

  Y Satou

  DEVELOPMENTAL BIOLOGY, Aug. 1999, Peer-reviewed, Lead author, Last author, Corresponding author

  
• Expression cloning of an ascidian syndecan suggests its role in embryonic cell adhesion and morphogenesis

  Y Satou; S Chiba; N Satoh

  DEVELOPMENTAL BIOLOGY, Jul. 1999, Peer-reviewed, Lead author, Corresponding author

  
• Identification and characterization of maternally expressed genes with mRNAs that are segregated with the endoplasm of early ascidian embryos

  K Imai; N Satoh; Y Satou

  INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY, Mar. 1999, Peer-reviewed, Last author

  
• Isolation and characterization of cDNA clones for epidermis-specific and muscle-specific genes in Ciona savignyi embryos

  S Chiba; Y Satou; T Nishikata; N Satoh

  ZOOLOGICAL SCIENCE, Apr. 1998, Peer-reviewed

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• posterior end mark 2 (pem-2), pem-4, pem-5, and pem-6: Maternal genes with localized mRNA in the ascidian embryo

  Y Satou; N Satoh

  DEVELOPMENTAL BIOLOGY, Dec. 1997, Peer-reviewed, Lead author

  
• Two cis-regulatory elements are essential for the muscle-specific expression of an actin gene in the ascidian embryo

  Y Satou; N Satoh

  DEVELOPMENT GROWTH & DIFFERENTIATION, Oct. 1996, Peer-reviewed, Lead author, Corresponding author

  
• An intrinsic genetic program for autonomous differentiation of muscle cells in the ascidian embryo

  N Satoh; Araki, I; Y Satou

  PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, Sep. 1996, Peer-reviewed, Last author

  
• TIMING OF INITIATION OF MUSCLE-SPECIFIC GENE-EXPRESSION IN THE ASCIDIAN EMBRYO PRECEDES THAT OF DEVELOPMENTAL FATE RESTRICTION IN LINEAGE CELLS

  Y SATOU; T KUSAKABE; S ARAKI; N SATOH

  DEVELOPMENT GROWTH & DIFFERENTIATION, Jun. 1995, Peer-reviewed, Lead author

  

Misc.

• A gene regulatory network for cell fate specification in Ciona embryos

  Yutaka Satou

  Current Topics in Developmental Biology, 2020, Peer-reviewed

  
• High-Throughput Protein Production Combined with High- Throughput SELEX Identifies an Extensive Atlas of Ciona robusta Transcription Factor DNA-Binding Specificities

  Kazuhiro R Nitta; Renaud Vincentelli; Edwin Jacox; Agnès Cimino; Yukio Ohtsuka; Daniel Sobral; Yutaka Satou; Christian Cambillau; Patrick Lemaire

  High-Throughput Protein Production and Purification (Methods and Protocols), 2019, Peer-reviewed

  
• Microinjection of Exogenous Nucleic Acids into Eggs: Ciona Species

  Kenji Kobayashi; Yutaka Satou

  Transgenic Ascidians, 2018, Peer-reviewed

  
• Ascidian Zic Genes

  Satou Y; Imai K. S

  Adv Exp Med Biol, 2018, Invited

  
• Urochordate genomes

  Satoh N; Kawashima T; Shoguchi E; Satou Y; Volff J

  Vertebrate Genomes, 2006, Peer-reviewed

  
• ゲノム情報 ホヤゲノム解読の意義

  佐藤 ゆたか; 佐藤 矩行

  蛋白質核酸酵素, Jul. 2003

  
• 脊索動物モデルのホヤ発生の遺伝子システム (ゲノムサイエンスの新たなる挑戦) -- (第2部 ゲノムの機能解析から生命の多様性に迫る 2.多細胞生物へ)

  佐藤 矩行; 佐藤 ゆたか

  蛋白質核酸酵素, Dec. 2001

  
• 発生・進化メカニズム ホヤ発生ゲノム科学の新展開 (ゲノムから生命システムへ) -- (ゲノムから生物学)

  川島 武士; 將口 栄一; 佐藤 ゆたか

  蛋白質核酸酵素, Dec. 2005

  
• Embryonic developmental system in Ciona intestinalis

  佐藤 ゆたか; 今井 薫

  Protein, nucleic acid and enzyme, Jul. 2007

  
• ゲノムからみたホヤの発生と進化 (発生システムのダイナミクス) -- (進化)

  佐藤 ゆたか; 佐藤 矩行

  蛋白質核酸酵素, May 2005

  
• Genome Science of Ciona intestinalis : Its Recent Progress(Comparative Genomics of Animals,Symposium,PROCEEDING OF THE 76^ ANNUAL MEETING OF THE ZOOLOGICAL SOCIETY OF JAPAN) :

  Satoh Nori; Satou Yutaka; Kawashima Takeshi; Shoguchi Eiichi

  Zoological science, 2005

  
• Special Review ホヤのゲノムワイドな遺伝子科学:脊索動物の普遍的な生命現象の理解を目指して

  佐藤 ゆたか; 佐藤 矩行

  細胞工学, Sep. 2003

  
• Special Review ホヤ・ゲノムの解読:動物の進化・比較ゲノム科学の新展開

  佐藤 矩行; 佐藤 ゆたか; 小原 雄治

  細胞工学, Jul. 2003

  
• THE ROLE OF FGF9/16/20 IN THE FORMATION OF MESENCHYME CELLS AND TRUNK LATERAL CELLS IN CIONA INTESTINALIS EMBRYOS(Developmental Biology,Abstracts of papers presented at the 74^ Annual Meeting of the Zoological Society of Japan) :

  Tokuoka Miki; Imai Kaoru; Satou Yutaka; Satoh Nori

  Zoological science, 2003

  
• EXPRESSION OF NOVEL ENDOSTYLE-SPECIFIC GENES IN CIONA INTESTINALIS(Taxonomy and Systematics)(Proceedings of the Seventy-Third Annual Meeting of the Zoological Society of Japan) :

  Miyamoto Yuki; Sasaki Akane; Satou Yutaka; Satoh Noriyuki; Ogasawara Michio

  Zoological science, 2002

  
• ホヤのゲノム科学:発生生物学の新たな展開 (特集 ゲノム研究から見た21世紀の生命科学)

  佐藤 矩行; 佐藤 ゆたか

  細胞工学, Jan. 2001

  
• EXPRESSION PATTERNS OF THREE BRAIN VESICLE-SPECIFIC GENES DURING EMBRYOGENESIS OF THE ASCIDIAN CIONA INTESTINALIS(Developmental Biology)(Proceeding of the Seventy-Third Annual Meeting of the Zoological Society of Japan) :

  Kusakabe R.; Kusakabe T.; Kawakami I.; Satou Y.; Satoh N.; Tsuda M.

  Zoological science, 2001

  
• Genes expressed in mesendodermal cells in Hemicentrotus pulcherrimus(Developmental Biology)(Proceeding of the Seventy-Third Annual Meeting of the Zoological Society of Japan) :

  Tokuoka Miki; Shoguchi Eiichi; Nagai Aki; Honda Yuko; Satou Yutaka; Satoh Noriyuki; Kominami Tetsuya

  Zoological science, 2001

  

Awards

• 10 Feb. 2014

  日本学術振興会, 第10回日本学術振興会賞
• 09 Dec. 2018

  公益社団法人日本動物学会, 日本動物学会　学会賞

External funds: Kakenhi

• ホヤ初期胚の細胞運命決定機構

  Grant-in-Aid for Scientific Research (B)

  Basic Section 44020:Developmental biology-related

  Kyoto University

  佐藤 ゆたか

  From 01 Apr. 2021, To 31 Mar. 2024, Granted

  ホヤ;遺伝子調節ネットワーク;Zic;Foxd;初期発生

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-21H02486/
• Logical reproduction of gene expression dynamics in embryos through reconstructing the gene regulatory network

  Grant-in-Aid for Scientific Research (B)

  Kyoto University

  Yutaka Satou

  From 18 Jul. 2017, To 31 Mar. 2022, Project Closed

  ホヤ;遺伝子発現調節;遺伝子調節ネットワーク;遺伝子発現制御;Fog;調節関数;ブール関数;発生・分化;ゲノム

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-17KT0020/
• Development of a tool for measuring the activity of core promoters using animal early embryos

  Grant-in-Aid for Challenging Exploratory Research

  Kyoto University

  Yutaka Satou

  From 01 Apr. 2015, To 31 Mar. 2017, Project Closed

  転写;ホヤ;コアプロモーター

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-15K14447/
• DNAループによる転写調節機構の解明

  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)

  Biological Sciences

  Kyoto University

  佐藤 ゆたか

  From 01 Apr. 2013, To 31 Mar. 2015, Project Closed

  転写調節;ゲノム;DNAループ

  https://kaken.nii.ac.jp/grant/KAKENHI-PUBLICLY-25118510/
• Asystems-level understanding of gene networks for the development and evolution of the chordate body plan

  Grant-in-Aid for Young Scientists (S)

  Kyoto University

  Yutaka SATOU

  From 01 Apr. 2009, To 31 Mar. 2014, Project Closed

  ホヤ;ゲノム;遺伝子ネットワーク;転写調節;BMPシグナリング;Pinhead;遺伝子調節ネットワーク

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-21671004/
• ホヤ胚発生を支配する転写制御ネットワーク

  Grant-in-Aid for Young Scientists (A)

  Kyoto University

  佐藤 ゆたか

  From 01 Apr. 2008, To 31 Mar. 2010, Project Closed

  ホヤ;遺伝子調節ネットワーク

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-20687014/
• ホヤ胚発生の包括的理解のための遺伝子発現アトラスの作製にむけた試み

  Grant-in-Aid for Challenging Exploratory Research

  Kyoto University

  佐藤 ゆたか

  From 01 Apr. 2008, To 31 Mar. 2010, Project Closed

  ホヤ;マイクロアレイ;発現プロファイル

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-20657042/
• ホヤ初期胚発生におけるゲノムワイドな転写因子ネットワークの解析

  Grant-in-Aid for Young Scientists (A)

  Kyoto University

  佐藤 ゆたか

  From 01 Apr. 2005, To 31 Mar. 2008, Project Closed

  Ciona intestinalis;ホヤ;遺伝子制御ネットワーク;転写因子;クロマチン免疫沈降法;転写因子ネットワーク;遺伝子発現制御;ゲノム

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-17687022/
• ホヤゲノムにおける5'スプライスリーダー配列をもつmRNAの網羅的解析

  Grant-in-Aid for Scientific Research on Priority Areas

  Biological Sciences

  Kyoto University

  佐藤 ゆたか

  From 01 Apr. 2005, To 31 Mar. 2006, Project Closed

  トランススプライシング;スプライスリーダー;Ciona intestinalis;ホヤ;完全長cDNAライブラリー

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-17017020/
• ホヤ胚の内胚葉分化と中胚葉誘導における分子機構の解明

  Grant-in-Aid for Young Scientists (A)

  Kyoto University

  佐藤 ゆたか

  From 01 Apr. 2002, To 31 Mar. 2005, Project Closed

  Ciona savignyi;Ciona intestinalis;macol;転写因子;Twist-like1;Mesp;心臓;間充織;Ciona savigny;EST

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-14704070/
• Mechanism of evolution and structure of developmental systems

  Grant-in-Aid for Scientific Research on Priority Areas

  Biological Sciences

  The University of Tokushima

  Sumihare NOJI

  From 01 Apr. 2001, To 31 Mar. 2006, Project Closed

  発生;進化;昆虫;脊椎動物;棘皮動物;コケ;緑藻類;ホヤ;ウニ;ヤツメウナギ;ヒメツリガケゴケ;カメ;コオロギ;ヒメツリガネゴケ;遺伝子;発生・分化;カワヤツメ;花, Development;evolution;insects;vertebrates;echinoderms;oogonizum;antheridium;ascidian

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-13044001/
• ホヤ胚の筋肉細胞分化決定機構の解析

  Grant-in-Aid for Encouragement of Young Scientists (A)

  Kyoto University

  佐藤 ゆたか

  From 01 Apr. 2000, To 31 Mar. 2002, Project Closed

  Ciona savignyi;Ciona intestinalis;EST;卵片;ユウレイボヤ;筋肉細胞分化;Cs-mepl;モルフォリノオリゴ;遠心卵片

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-12780554/
• Construction mechanism of basic design for adaptive neuronal circuits

  Grant-in-Aid for Transformative Research Areas (A)

  Transformative Research Areas, Section (III)

  Osaka University;University of Tsukuba

  堀江 健生

  From 10 Sep. 2021, To 31 Mar. 2026, Granted

  ホヤ;神経回路;シングルセルトランスクリプトーム;光遺伝学;バイオインフォマティクス;適応回路;単一細胞トランスクリプトーム解析;細胞分化

  https://kaken.nii.ac.jp/grant/KAKENHI-PLANNED-21H05239/
• ホヤ胚の運命決定機構の解明

  Grant-in-Aid for Scientific Research (B)

  Basic Section 44020:Developmental biology-related

  Kyoto University

  佐藤 ゆたか

  From 01 Apr. 2024, To 31 Mar. 2027, Granted

  ホヤ;遺伝子調節ネットワーク

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-24K02032/
• 機械学習を用いたホヤ初期胚の運命決定をつかさどる遺伝子調節ネットワーク動態の再現

  Grant-in-Aid for Challenging Research (Pioneering)

  Medium-sized Section 44:Biology at cellular to organismal levels, and related fields

  Kyoto University

  佐藤 ゆたか

  From 28 Jun. 2024, To 31 Mar. 2028, Granted

  ホヤ;デジタルツイン;初期胚;遺伝子調節ネットワーク

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-24K21274/
• 機械学習を用いたホヤ初期胚の運命決定をつかさどる遺伝子調節ネットワーク動態の再現

  Grant-in-Aid for Challenging Research (Pioneering)

  Medium-sized Section 44:Biology at cellular to organismal levels, and related fields

  Kyoto University

  佐藤 ゆたか

  From 28 Jun. 2024, To 31 Mar. 2028, Granted

  ホヤ;デジタルツイン;初期胚;遺伝子調節ネットワーク

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-24K21274/

External funds: others

• 脊索動物モデルとしてのホヤの戦略的リソース整備（カタユウレイボヤ野生型(クローズドコロニー)の収集・保存・ 提供・品質管理、リソースのバックアップ保存） (2023年度分)

  文部科学省, 研究開発施設共用等促進費補助金

  From 01 Apr. 2023, To 31 Mar. 2024

  分担
• 脊索動物モデルとしてのホヤの戦略的リソース整備（カタユウレイボヤ野生型(クローズドコロニー)の収集・保存・ 提供・品質管理、リソースのバックアップ保存） (2022年度分)

  文部科学省, 研究開発施設共用等促進費補助金

  From 01 Apr. 2022, To 31 Mar. 2023

  代表
• 脊索動物モデルとしてのホヤの戦略的リソース整備（カタユウレイボヤ野生型(クローズドコロニー)の収集・保存・ 提供・品質管理、トランスジェニック系統の保存 ） (2021年度分)

  文部科学省, 研究開発施設共用等促進費補助金

  From 01 Apr. 2021, To 31 Mar. 2022

  代表
• カタユウレイボヤリソースの拡充整備（カタユウレイボヤ自然集団種（野生型）及び近交系の収集・保存・提供、トランスジェニック系統の保存）

  文部科学省 ナショナルバイオリソースプロジェクト

  From 2012, To 2016

  佐藤　ゆたか
• カタユウレイボヤリソースの拡充整備（カタユウレイボヤ自然集団種（野生型）及び近交系の収集・保存・提供、トランスジェニック系統の保存） （平成26年度分）

  文部科学省 ナショナルバイオリソースプロジェクト

  From 01 Apr. 2014, To 31 Mar. 2015

  佐藤　ゆたか
• カタユウレイボヤリソースの拡充整備（カタユウレイボヤ自然集団種（野生型）及び近交系の収集・保存・提供、トランスジェニック系統の保存） （平成27年度分）

  文部科学省 医療研究開発推進事業費補助金

  From 01 Apr. 2015, To 31 Mar. 2016

  佐藤　ゆたか
• カタユウレイボヤリソースの拡充整備（カタユウレイボヤ自然集団種（野生型）及び近交系の収集・保存・提供、トランスジェニック系統の保存） （平成28年度分）

  医療研究開発推進事業費補助金

  From 01 Apr. 2016, To 31 Mar. 2017

  佐藤　ゆたか
• 脊索動物モデルとしてのホヤの戦略的リソース整備（カタユウレイボヤ野生型(クロース?ト?コロニー)の収集・保存・ 提供・品質管理、トランスジェニック系統の保存 ） （平成29年度分）

  医療研究開発推進事業費補助金

  From 01 Apr. 2017, To 31 Mar. 2018

  佐藤 ゆたか
• 脊索動物モデルとしてのホヤの戦略的リソース整備（カタユウレイボヤ野生型(クロース?ト?コロニー)の収集・保存・ 提供・品質管理、トランスジェニック系統の保存 ） （平成30年度分）

  医療研究開発推進事業費補助金

  From 01 Apr. 2018, To 31 Mar. 2019

  佐藤 ゆたか
• 脊索動物モデルとしてのホヤの戦略的リソース整備（カタユウレイボヤ野生型(クロース?ト?コロニー)の収集・保存・ 提供・品質管理、トランスジェニック系統の保存 ） （2019年度分）

  医療研究開発推進事業費補助金

  From 01 Apr. 2019, To 31 Mar. 2020

  佐藤　ゆたか
• 脊索動物モデルとしてのホヤの戦略的リソース整備（カタユウレイボヤ野生型(クロース?ト?コロニー)の収集・保存・ 提供・品質管理、トランスジェニック系統の保存 ） （2020年度分）

  医療研究開発推進事業費補助金

  From 01 Apr. 2020, To 31 Mar. 2021

  佐藤　ゆたか

Education

Teaching subject(s)

• From 01 Apr. 2024, To 31 Mar. 2025

  Fundamentals of Cell and Molecular Biology

  N486, Fall, Institute for Liberal Arts and Sciences, 2
• From 01 Apr. 2024, To 31 Mar. 2025

  Special Study CourseII(Biological Sciences) 8

  8711, Year-long, Faculty of Science, 12
• From 01 Apr. 2024, To 31 Mar. 2025

  Molecular Biology II

  2703, Fall, Faculty of Science, 2
• From 01 Apr. 2024, To 31 Mar. 2025

  Basic Developmental and Regenerative Biology

  2713, Fall, Faculty of Science, 2
• From 01 Apr. 2024, To 31 Mar. 2025

  Laboratory work in Biological Science C

  3764, Spring, Faculty of Science, 2
• From 01 Apr. 2024, To 31 Mar. 2025

  Genome Science

  3729, Fall, Faculty of Science, 2
• From 01 Apr. 2024, To 31 Mar. 2025

  Developmental Biology I

  3713, Spring, Faculty of Science, 2
• From 01 Apr. 2024, To 31 Mar. 2025

  Seminars in Biological Science A

  4730, Fall, Faculty of Science, 2
• From 01 Apr. 2024, To 31 Mar. 2025

  Seminar on Developmental Biology D

  8128, Fall, Graduate School of Science, 2
• From 01 Apr. 2024, To 31 Mar. 2025

  Seminar on Developmental Biology C

  8127, Spring, Graduate School of Science, 2
• From 01 Apr. 2024, To 31 Mar. 2025

  Advanced Lectures : Developmental Biology I A

  8121, Spring, Graduate School of Science, 2
• From 01 Apr. 2024, To 31 Mar. 2025

  Seminar on Developmental Biology B

  8126, Fall, Graduate School of Science, 2
• From 01 Apr. 2024, To 31 Mar. 2025

  Seminar on Developmental Biology A

  8125, Spring, Graduate School of Science, 2
• From 01 Apr. 2024, To 31 Mar. 2025

  Advanced Lectures : Developmental Biology I B

  8122, Fall, Graduate School of Science, 2
• From 01 Apr. 2024, To 31 Mar. 2025

  Fundamental Experiments of Cellular and Molecular Biology

  2729, Fall, Faculty of Science, 4
• From 01 Apr. 2023, To 31 Mar. 2024

  Fundamentals of Cell and Molecular Biology

  N486, Fall, Institute for Liberal Arts and Sciences, 2
• From 01 Apr. 2023, To 31 Mar. 2024

  Special Study CourseII(Biological Sciences) 8

  8711, Year-long, Faculty of Science, 12
• From 01 Apr. 2023, To 31 Mar. 2024

  Genome Science

  3729, Fall, Faculty of Science, 2
• From 01 Apr. 2023, To 31 Mar. 2024

  Developmental Biology I

  3713, Spring, Faculty of Science, 2
• From 01 Apr. 2023, To 31 Mar. 2024

  Basic Developmental and Regenerative Biology

  2713, Fall, Faculty of Science, 2
• From 01 Apr. 2023, To 31 Mar. 2024

  Seminars in Biological Science A

  4730, Fall, Faculty of Science, 2
• From 01 Apr. 2023, To 31 Mar. 2024

  Laboratory work in Biological Science C

  3764, Spring, Faculty of Science, 2
• From 01 Apr. 2023, To 31 Mar. 2024

  Seminar on Developmental Biology A

  8125, Spring, Graduate School of Science, 2
• From 01 Apr. 2023, To 31 Mar. 2024

  Advanced Lectures : Developmental Biology II B

  8124, Fall, Graduate School of Science, 2
• From 01 Apr. 2023, To 31 Mar. 2024

  Advanced Lectures : Developmental Biology II A

  8123, Spring, Graduate School of Science, 2
• From 01 Apr. 2023, To 31 Mar. 2024

  Seminar on Developmental Biology D

  8128, Fall, Graduate School of Science, 2
• From 01 Apr. 2023, To 31 Mar. 2024

  Seminar on Developmental Biology C

  8127, Spring, Graduate School of Science, 2
• From 01 Apr. 2023, To 31 Mar. 2024

  Seminar on Developmental Biology B

  8126, Fall, Graduate School of Science, 2
• From 01 Apr. 2022, To 31 Mar. 2023

  Seminar on Developmental Biology D

  8128, Fall, Graduate School of Science, 2
• From 01 Apr. 2022, To 31 Mar. 2023

  Fundamentals of Cell and Molecular Biology

  N486, Fall, Institute for Liberal Arts and Sciences, 2
• From 01 Apr. 2022, To 31 Mar. 2023

  Basic Developmental and Regenerative Biology

  2713, Fall, Faculty of Science, 2
• From 01 Apr. 2022, To 31 Mar. 2023

  Seminars in Biological Science A

  4730, Fall, Faculty of Science, 2
• From 01 Apr. 2022, To 31 Mar. 2023

  Fundamental Experiments of Cellular and Molecular Biology

  2729, Fall, Faculty of Science, 4
• From 01 Apr. 2022, To 31 Mar. 2023

  Seminar on Developmental Biology A

  8125, Spring, Graduate School of Science, 2
• From 01 Apr. 2022, To 31 Mar. 2023

  Advanced Lectures : Developmental Biology I A

  8121, Spring, Graduate School of Science, 2
• From 01 Apr. 2022, To 31 Mar. 2023

  Developmental Biology I

  3713, Spring, Faculty of Science, 2
• From 01 Apr. 2022, To 31 Mar. 2023

  Genome Science

  3729, Fall, Faculty of Science, 2
• From 01 Apr. 2022, To 31 Mar. 2023

  Seminar on Developmental Biology B

  8126, Fall, Graduate School of Science, 2
• From 01 Apr. 2022, To 31 Mar. 2023

  Advanced Lectures : Developmental Biology I B

  8122, Fall, Graduate School of Science, 2
• From 01 Apr. 2022, To 31 Mar. 2023

  Laboratory work in Biological Science C

  3764, Spring, Faculty of Science, 2
• From 01 Apr. 2022, To 31 Mar. 2023

  Seminar on Developmental Biology C

  8127, Spring, Graduate School of Science, 2
• From 01 Apr. 2022, To 31 Mar. 2023

  Special Study CourseII(Biological Sciences) 8

  8711, Year-long, Faculty of Science, 12
• From Apr. 2011, To Mar. 2012

  ゲノム科学実習

  Spring, 理学研究科
• From Apr. 2011, To Mar. 2012

  生物学実習Ｃ　（３）

  Spring, 理学部
• From Apr. 2011, To Mar. 2012

  生物学セミナ－Ａ　（８）

  Fall, 理学部
• From Apr. 2011, To Mar. 2012

  生物科学課題研究８

  Year-long, 理学部
• From Apr. 2011, To Mar. 2012

  発生生物学Ｉ

  Spring, 理学部
• From Apr. 2011, To Mar. 2012

  ゲノム科学

  Fall, 理学部
• From Apr. 2012, To Mar. 2013

  Basic Biology B

  Fall, 全学共通科目
• From Apr. 2012, To Mar. 2013

  Seminars in Biological Science A

  Fall, 理学部
• From Apr. 2012, To Mar. 2013

  Laboratory work in Biological Science C

  Spring, 理学部
• From Apr. 2012, To Mar. 2013

  Special Study CourseII(Biological Sciences) 8

  Year-long, 理学部
• From Apr. 2012, To Mar. 2013

  Developmental Biology I

  Spring, 理学部
• From Apr. 2012, To Mar. 2013

  Genome Science

  Fall, 理学部
• From Apr. 2013, To Mar. 2014

  Developmental Biology I

  Spring, 理学部
• From Apr. 2013, To Mar. 2014

  Genome Science

  Fall, 理学部
• From Apr. 2013, To Mar. 2014

  Laboratory work in Biological Science C

  Spring, 理学部
• From Apr. 2013, To Mar. 2014

  Seminars in Biological Science A

  Fall, 理学部
• From Apr. 2013, To Mar. 2014

  Special Study CourseII(Biological Sciences) 8

  Year-long, 理学部
• From Apr. 2014, To Mar. 2015

  Developmental Biology I

  Spring, 理学部
• From Apr. 2014, To Mar. 2015

  Genome Science

  Fall, 理学部
• From Apr. 2014, To Mar. 2015

  Laboratory work in Biological Science C

  Spring, 理学部
• From Apr. 2014, To Mar. 2015

  Seminars in Biological Science A

  Fall, 理学部
• From Apr. 2014, To Mar. 2015

  Special Study CourseII(Biological Sciences) 8

  Year-long, 理学部
• From Apr. 2014, To Mar. 2015

  Advanced Lectures : Developmental Biology I A

  Spring, 理学研究科
• From Apr. 2014, To Mar. 2015

  Advanced Lectures : Developmental Biology I B

  Fall, 理学研究科
• From Apr. 2014, To Mar. 2015

  Seminar on Developmental Biology A

  Spring, 理学研究科
• From Apr. 2014, To Mar. 2015

  Seminar on Developmental Biology B

  Fall, 理学研究科
• From Apr. 2014, To Mar. 2015

  Seminar on Developmental Biology C

  Spring, 理学研究科
• From Apr. 2014, To Mar. 2015

  Seminar on Developmental Biology D

  Fall, 理学研究科
• From Apr. 2014, To Mar. 2015

  Basic Biology II

  Fall, 全学共通科目
• From Apr. 2015, To Mar. 2016

  Basic Biology II

  Fall, 全学共通科目
• From Apr. 2015, To Mar. 2016

  Seminars in Biological Science A

  Fall, 理学部
• From Apr. 2015, To Mar. 2016

  Laboratory work in Biological Science C

  Spring, 理学部
• From Apr. 2015, To Mar. 2016

  Special Study CourseII(Biological Sciences) 8

  Year-long, 理学部
• From Apr. 2015, To Mar. 2016

  Developmental Biology I

  Spring, 理学部
• From Apr. 2015, To Mar. 2016

  Seminar on Developmental Biology A

  Spring, 理学研究科
• From Apr. 2015, To Mar. 2016

  Seminar on Developmental Biology B

  Fall, 理学研究科
• From Apr. 2015, To Mar. 2016

  Seminar on Developmental Biology C

  Spring, 理学研究科
• From Apr. 2015, To Mar. 2016

  Seminar on Developmental Biology D

  Fall, 理学研究科
• From Apr. 2015, To Mar. 2016

  Advanced Lectures : Developmental Biology II A

  Spring, 理学研究科
• From Apr. 2015, To Mar. 2016

  Advanced Lectures : Developmental Biology II B

  Fall, 理学研究科
• From Apr. 2015, To Mar. 2016

  Genome Science

  Fall, 理学部
• From Apr. 2016, To Mar. 2017

  Basic Developmental and Regenerative Biology

  Fall, 理学部
• From Apr. 2016, To Mar. 2017

  Seminars in Biological Science A

  Fall, 理学部
• From Apr. 2016, To Mar. 2017

  Laboratory work in Biological Science C

  Spring, 理学部
• From Apr. 2016, To Mar. 2017

  Special Study CourseII(Biological Sciences) 8

  Year-long, 理学部
• From Apr. 2016, To Mar. 2017

  Developmental Biology I

  Spring, 理学部
• From Apr. 2016, To Mar. 2017

  Seminar on Developmental Biology A

  Spring, 理学研究科
• From Apr. 2016, To Mar. 2017

  Seminar on Developmental Biology B

  Fall, 理学研究科
• From Apr. 2016, To Mar. 2017

  Seminar on Developmental Biology C

  Spring, 理学研究科
• From Apr. 2016, To Mar. 2017

  Seminar on Developmental Biology D

  Fall, 理学研究科
• From Apr. 2016, To Mar. 2017

  Advanced Lectures : Developmental Biology I A

  Spring, 理学研究科
• From Apr. 2016, To Mar. 2017

  Advanced Lectures : Developmental Biology I B

  Fall, 理学研究科
• From Apr. 2016, To Mar. 2017

  Genome Science

  Fall, 理学部
• From Apr. 2016, To Mar. 2017

  Fundamentals of Cell and Molecular Biology

  Fall, 全学共通科目
• From Apr. 2017, To Mar. 2018

  Basic Developmental and Regenerative Biology

  Fall, 理学部
• From Apr. 2017, To Mar. 2018

  Seminars in Biological Science A

  Fall, 理学部
• From Apr. 2017, To Mar. 2018

  Laboratory work in Biological Science C

  Spring, 理学部
• From Apr. 2017, To Mar. 2018

  Special Study CourseII(Biological Sciences) 8

  Year-long, 理学部
• From Apr. 2017, To Mar. 2018

  Developmental Biology I

  Spring, 理学部
• From Apr. 2017, To Mar. 2018

  Seminar on Developmental Biology A

  Spring, 理学研究科
• From Apr. 2017, To Mar. 2018

  Seminar on Developmental Biology B

  Fall, 理学研究科
• From Apr. 2017, To Mar. 2018

  Seminar on Developmental Biology C

  Spring, 理学研究科
• From Apr. 2017, To Mar. 2018

  Seminar on Developmental Biology D

  Fall, 理学研究科
• From Apr. 2017, To Mar. 2018

  Advanced Lectures : Developmental Biology II A

  Spring, 理学研究科
• From Apr. 2017, To Mar. 2018

  Advanced Lectures : Developmental Biology II B

  Fall, 理学研究科
• From Apr. 2017, To Mar. 2018

  Genome Science

  Fall, 理学部
• From Apr. 2017, To Mar. 2018

  Fundamentals of Cell and Molecular Biology

  Fall, 全学共通科目
• From Apr. 2018, To Mar. 2019

  Basic Developmental and Regenerative Biology

  Fall, 理学部
• From Apr. 2018, To Mar. 2019

  Seminars in Biological Science A

  Fall, 理学部
• From Apr. 2018, To Mar. 2019

  Laboratory work in Biological Science C

  Spring, 理学部
• From Apr. 2018, To Mar. 2019

  Special Study CourseII(Biological Sciences) 8

  Year-long, 理学部
• From Apr. 2018, To Mar. 2019

  Developmental Biology I

  Spring, 理学部
• From Apr. 2018, To Mar. 2019

  Seminar on Developmental Biology A

  Spring, 理学研究科
• From Apr. 2018, To Mar. 2019

  Seminar on Developmental Biology B

  Fall, 理学研究科
• From Apr. 2018, To Mar. 2019

  Seminar on Developmental Biology C

  Spring, 理学研究科
• From Apr. 2018, To Mar. 2019

  Seminar on Developmental Biology D

  Fall, 理学研究科
• From Apr. 2018, To Mar. 2019

  Advanced Lectures : Developmental Biology I A

  Spring, 理学研究科
• From Apr. 2018, To Mar. 2019

  Advanced Lectures : Developmental Biology I B

  Fall, 理学研究科
• From Apr. 2018, To Mar. 2019

  Genome Science

  Fall, 理学部
• From Apr. 2018, To Mar. 2019

  Fundamentals of Cell and Molecular Biology

  Fall, 全学共通科目
• From Apr. 2019, To Mar. 2020

  Basic Developmental and Regenerative Biology

  Fall, 理学部
• From Apr. 2019, To Mar. 2020

  Seminars in Biological Science A

  Fall, 理学部
• From Apr. 2019, To Mar. 2020

  Laboratory work in Biological Science C

  Spring, 理学部
• From Apr. 2019, To Mar. 2020

  Special Study CourseII(Biological Sciences) 8

  Year-long, 理学部
• From Apr. 2019, To Mar. 2020

  Developmental Biology I

  Spring, 理学部
• From Apr. 2019, To Mar. 2020

  Seminar on Developmental Biology A

  Spring, 理学研究科
• From Apr. 2019, To Mar. 2020

  Seminar on Developmental Biology B

  Fall, 理学研究科
• From Apr. 2019, To Mar. 2020

  Seminar on Developmental Biology C

  Spring, 理学研究科
• From Apr. 2019, To Mar. 2020

  Seminar on Developmental Biology D

  Fall, 理学研究科
• From Apr. 2019, To Mar. 2020

  Advanced Lectures : Developmental Biology II A

  Spring, 理学研究科
• From Apr. 2019, To Mar. 2020

  Advanced Lectures : Developmental Biology II B

  Fall, 理学研究科
• From Apr. 2019, To Mar. 2020

  Genome Science

  Fall, 理学部
• From Apr. 2019, To Mar. 2020

  Fundamentals of Cell and Molecular Biology

  Fall, 全学共通科目
• From Apr. 2020, To Mar. 2021

  Basic Developmental and Regenerative Biology

  Fall, 理学部
• From Apr. 2020, To Mar. 2021

  Seminars in Biological Science A

  Fall, 理学部
• From Apr. 2020, To Mar. 2021

  Laboratory Work in Biological Science C

  Spring, 理学部
• From Apr. 2020, To Mar. 2021

  Special Study CourseII(Biological Sciences) 8

  Year-long, 理学部
• From Apr. 2020, To Mar. 2021

  Developmental Biology I

  Spring, 理学部
• From Apr. 2020, To Mar. 2021

  Seminar on Developmental Biology A

  Spring, 理学研究科
• From Apr. 2020, To Mar. 2021

  Seminar on Developmental Biology B

  Fall, 理学研究科
• From Apr. 2020, To Mar. 2021

  Seminar on Developmental Biology C

  Spring, 理学研究科
• From Apr. 2020, To Mar. 2021

  Seminar on Developmental Biology D

  Fall, 理学研究科
• From Apr. 2020, To Mar. 2021

  Advanced Lectures : Developmental Biology I A

  Spring, 理学研究科
• From Apr. 2020, To Mar. 2021

  Advanced Lectures : Developmental Biology I B

  Fall, 理学研究科
• From Apr. 2020, To Mar. 2021

  Genome Science

  Fall, 理学部
• From Apr. 2020, To Mar. 2021

  Fundamentals of Cell and Molecular Biology

  Fall, 全学共通科目
• From Apr. 2020, To Mar. 2021

  Fundamental Experiments of Cellular and Molecular Biology

  Fall, 理学部
• From Apr. 2021, To Mar. 2022

  Basic Developmental and Regenerative Biology

  Fall, 理学部
• From Apr. 2021, To Mar. 2022

  Seminars in Biological Science A

  Fall, 理学部
• From Apr. 2021, To Mar. 2022

  Laboratory Work in Biological Science C

  Spring, 理学部
• From Apr. 2021, To Mar. 2022

  Special Study CourseII(Biological Sciences) 8

  Year-long, 理学部
• From Apr. 2021, To Mar. 2022

  Developmental Biology I

  Spring, 理学部
• From Apr. 2021, To Mar. 2022

  Seminar on Developmental Biology A

  Spring, 理学研究科
• From Apr. 2021, To Mar. 2022

  Seminar on Developmental Biology B

  Fall, 理学研究科
• From Apr. 2021, To Mar. 2022

  Seminar on Developmental Biology C

  Spring, 理学研究科
• From Apr. 2021, To Mar. 2022

  Seminar on Developmental Biology D

  Fall, 理学研究科
• From Apr. 2021, To Mar. 2022

  Advanced Lectures : Developmental Biology II A

  Spring, 理学研究科
• From Apr. 2021, To Mar. 2022

  Advanced Lectures : Developmental Biology II B

  Fall, 理学研究科
• From Apr. 2021, To Mar. 2022

  Genome Science

  Fall, 理学部
• From Apr. 2021, To Mar. 2022

  Fundamentals of Cell and Molecular Biology

  Fall, 全学共通科目

Participation in PhD Defense

• Regulation of gut peristalsis during development

  SHIKAYA YUUKI, Graduate School of Science, Sub-chief Examiner

  23 Mar. 2023
• Gut contractile organoids: a novel model system to study the cellular synchronization in gastrointestinal motility

  YAGASAKI REI, Graduate School of Science, Sub-chief Examiner

  23 Mar. 2023
• ホヤ胚において動植軸を安定させる転写因子Foxdの働き

  TOKUHIRO SHINICHI, Graduate School of Science, Chief Examiner

  26 Jul. 2021
• ホヤ初期胚における神経誘導機構の解析

  太田　尚志, Sub-chief Examiner

  25 Nov. 2013
• ホヤ初期胚における遺伝子発現の時間的な調節の解析

  池田　達郎

  23 Mar. 2017
• ホヤ胚の神経誘導と表皮感覚神経の分化機構に関する研究

  脇　華菜

  23 Mar. 2017
• Temporal control of muscle gene expression in an ascidian embryo（ホヤ胚における筋肉で発現する遺伝子の時間的な調節）

  余　徳立, Chief Examiner

  23 May 2019
• The gene regulatory network in the anterior neural plate border of ascidian embryos（ホヤ胚の前方神経板境界における遺伝子調節ネットワーク）

  LIU BOQI, Chief Examiner

  23 Mar. 2020

Part-time lecturer

• From 01 May 2023, To 31 Aug. 2023

  大阪大学, 大学院理学研究科

Administration

School management (title, position)

• From 01 Apr. 2008, To 31 Mar. 2009

  組換えDNA実験安全委員会 委員
• From 01 Apr. 2021, To 31 Mar. 2023

  組換えＤＮＡ実験安全委員会 委員

Faculty management (title, position)

• From 01 Apr. 2024, To 31 Mar. 2026

  理学研究科相談室運営委員会委員
• From 01 Apr. 2024, To 31 Mar. 2025

  理学研究科放射線委員会委員
• From 01 Apr. 2024, To 31 Mar. 2025

  理学研究科放射線障害防止委員会委員
• From 01 Apr. 2023, To 31 Mar. 2024

  理学研究科放射線委員会委員
• From 01 Apr. 2023, To 31 Mar. 2024

  理学研究科放射線障害防止委員会委員
• From 01 Apr. 2022, To 31 Mar. 2023

  理学研究科放射線委員会委員長
• From 01 Apr. 2022, To 31 Mar. 2023

  理学研究科放射線障害防止委員会委員
• From 01 Apr. 2022, To 31 Mar. 2023

  理学研究科SACRA学際融合部門委員会委員
• From 01 Apr. 2015, To 31 Mar. 2016

  理学部・教育委員会委員
• From 01 Apr. 2015, To 31 Mar. 2016

  理学部・教育委員会　情報教育委員会委員
• From 01 Apr. 2016, To 31 Mar. 2017

  理学部・教育委員会委員
• From 01 Apr. 2016, To 31 Mar. 2017

  理学部・教育委員会　情報教育委員会委員
• From 01 Apr. 2017, To 31 Mar. 2018

  理学部・教育委員会委員
• From 01 Apr. 2017, To 31 Mar. 2018

  理学部・教育委員会　情報教育委員会委員
• From 01 Apr. 2021, To 31 Mar. 2022

  理学研究科SACRA学際融合部門委員会委員