Basic Information

Faculty

• 農学部

Professional Memberships

• American Society for Horticultural Science
• THE JAPANESE SOCIETY FOR HORTICULTURAL SCIENCE
• Japanese Society of Breeding
• International Society for Horticultural Science

Academic Degree

• 修士（農学）(京都大学)
• 博士（農学）(京都大学)

Academic Resume (Graduate Schools)

• 京都大学, 大学院農学研究科修士課程農学専攻, 修了
• 京都大学, 大学院農学研究科博士後期課程農学専攻, 修了

Academic Resume (Undergraduate School/Majors)

• 京都大学, 農学部資源生物科学科, 卒業

High School

• High School

  岡山県立倉敷青陵高等学校

Research History

• From Jun. 2025, To Present

  National Agriculture and Food Research Organization, Core Technology Research Headquaters, NARO Research Center for Agricultural Information Technology, NARO, Senior Researcher
• From May 2019, To Present

  Kyoto University, Graduate School of Agriculture, Assistant Professor
• From Apr. 2018, To Apr. 2019

  Kyoto University, Graduate School of Agriculture, Postdoc
• From Apr. 2016, To Mar. 2018

  日本学術振興会, 特別研究員DC2

ID,URL

• J-Global ID

  201801013623000497

researchmap URL

• https://researchmap.jp/nishiyama020

Research

Research Topics, Overview of the research

• Research Topics

  Genetics, genomics, and breeding of fruit tree species

• Overview of the research

  Dr. Soichiro Nishiyama is working on genetics and breeding science for fruit crops. The current research focus is mainly on persimmon and blueberry.

Research Interests

• 果樹園芸学
• 倍数性
• 遺伝

Research Areas

• Environmental science/Agricultural science, Horticulture

Papers

• Developmental dynamics of cellular specialization during proanthocyanidin accumulation in persimmon fruit

  Yosuke Fujiwara; Soichiro Nishiyama; Akane Kusumi; Keiko Okamoto-Furuta; Hisayo Yamane; Keizo Yonemori; Ryutaro Tao

  Plant Physiology, Jan. 2026, Corresponding author

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• Spatially resolved analysis of growth dynamics in pome and drupe fruits of Rosaceae using 3D Gaussian Splatting

  Ayame Shimbo; Soichiro Nishiyama; Akane Kusumi; Takuya Morimoto; Hisayo Yamane; Akihiro Itai; Ryutaro Tao

  Plant Phenomics, Jan. 2026, Corresponding author

  
• Spatially resolved analysis of longitudinal fruit growth in persimmon (Diospyros kaki) via three-dimensional phenotyping

  Akane Kusumi; Soichiro Nishiyama; Hisayo Yamane; Ryutaro Tao

  Scientia Horticulturae, Sep. 2025, Corresponding author

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• Phenological variation associates with the stability of fruit quality traits in cultivated tetraploid blueberry.

  Ebrahiem Babiker; Kyoka Nagasaka; Soichiro Nishiyama; Hisayo Yamane; Ryohei Nakano; Ryutaro Tao

  G3 (Bethesda, Md.), 15 May 2025, Corresponding author

  
• Favored Blueberry Fruit Attributes by Japanese Consumers: Preferences and Sensory Evaluation of Blueberry Taste and Texture

  Naoki Hiraiwa; Hisayo Yamane; Soichiro Nishiyama; Ryutaro Tao

  The Horticulture Journal, 2025

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• The haplotype-phased genome assembly facilitated the deciphering of the bud dormancy-related QTLs in Prunus mume.

  Tzu-Fan Hsiang; Hisayo Yamane; Lin Yuan-Jui; Miku Sugimori; Soichiro Nishiyama; Kyoka Nagasaka; Ryohei Nakano; Tao Ryutaro

  DNA research : an international journal for rapid publication of reports on genes and genomes, 04 Dec. 2024

  
• Phenotypic Characterization of Astringent Persimmon Lines with Recessive Homozygosity at the ASTRINGENCY Marker Locus

  Yosuke Fujiwara; Soichiro Nishiyama; Noriyuki Onoue; Atsushi Kono; Akihiko Sato; Keizo Yonemori; Ryutaro Tao

  The Horticulture Journal, 2025, Corresponding author

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• Toward an establishment of a deep learning-based flower bud phenotyping system in Prunus mume

  T.-F. Hsiang; Y.-R. Lin; H. Yamane; S. Nishiyama; R. Tao

  Acta Horticulturae, Sep. 2024

  
• A low-cost dpMIG-seq method for elucidating complex inheritance in polysomic crops: A case study in tetraploid blueberry

  Kyoka Nagasaka; Kazusa Nishimura; Ko Motoki; Keigo Yamagata; Soichiro Nishiyama; Hisayo Yamane; Ryutaro Tao; Ryohei Nakano; Tetsuya Nakazaki

  Horticulture Research, 04 Sep. 2024

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• Phenotypic and Gene Expression Analysis of Fruit Development of ‘Rojo Brillante’ and ‘Fuyu’ Persimmon (Diospyros kaki L.) Cultivars in Two Different Locations

  Tania Dorta; Noriyuki Onoue; Tzu-Fan Hsiang; Soichiro Nishiyama; Gabino Ríos; Ryutaro Tao; Manuel Blasco

  Agronomy, 17 Jul. 2024

  
• Genetic insights into the dissolution of dioecy in diploid persimmon Diospyros oleifera Cheng.

  Peng Sun; Soichiro Nishiyama; Huawei Li; Yini Mai; Weijuan Han; Yujing Suo; Chengzhi Liang; Huilong Du; Songfeng Diao; Yiru Wang; Jiaying Yuan; Yue Zhang; Ryutaro Tao; Fangdong Li; Jianmin Fu

  BMC plant biology, 30 Nov. 2023

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• Three-dimensional fruit growth analysis clarifies developmental mechanisms underlying complex shape diversity in persimmon fruit.

  Akane Kusumi; Soichiro Nishiyama; Ryutaro Tao

  Journal of experimental botany, 21 Nov. 2023, Corresponding author

  
• Integer programming for selecting set of informative markers in paternity inference.

  Soichiro Nishiyama; Kengo Sato; Ryutaro Tao

  BMC bioinformatics, 08 Jul. 2022, Lead author, Corresponding author

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• Phenotypic evaluation of shape diversity in persimmon fruit using two- and three-dimensional imaging

  A. Kusumi; Y. Osako; R. Nakano; S. Nishiyama; R. Tao

  Acta Horticulturae, Apr. 2022

  
• Candidate gene analysis for ASTRINGENCY controlling fruit astringency in Diospyros kaki based on mRNA- and small RNA-sequencing analyses

  Y. Fujiwara; S. Nishiyama; N. Onoue; R. Matsuzaki; K. Yonemori; R. Tao

  Acta Horticulturae, Apr. 2022

  
• Genome-Wide Identification of Loci Associated With Phenology-Related Traits and Their Adaptive Variations in a Highbush Blueberry Collection

  Kyoka Nagasaka; Soichiro Nishiyama; Mao Fujikawa; Hisayo Yamane; Kenta Shirasawa; Ebrahiem Babiker; Ryutaro Tao

  Frontiers in Plant Science, 21 Jan. 2022, Corresponding author

  
• Characterization of Tissue-specific Transcriptomic Responses to Seedlessness Induction by Gibberellin in Table Grape

  Soichiro Nishiyama; Daisuke Yoshimura; Akihiko Sato; Keizo Yonemori

  The Horticulture Journal, 2022, Corresponding author

  
• Insights into the Physiological and Molecular Mechanisms Underlying Highbush Blueberry Fruit Growth Affected by the Pollen Source

  Kyoka Nagasaka; Hisayo Yamane; Soichiro Nishiyama; Shu Ebihara; Ryusuke Matsuzaki; Masakazu Shoji; Ryutaro Tao

  The Horticulture Journal, 2022

  
• Characterization of a gene co-expression network associated with mgst, the pollen modifier gene of gametophytic self-incompatibility in sweet cherry (prunus avium l.)

  K. Ono; E. T. Chang; S. Nishiyama; A. Wünsch; R. Tao; K. Ono

  Acta Horticulturae, Jun. 2021

  
• Frequent reversion and continuous size variation in the small fruit mutant 'totsutanenashi' persimmon

  S. Wang; C. L. Tam; I. Naito; S. Nishiyama; R. Tao

  Acta Horticulturae, Jun. 2021

  
• Genomics-based discrimination of 2n gamete formation mechanisms in polyploids: a case study in nonaploid Diospyros kaki ‘Akiou’

  Peng Sun; Soichiro Nishiyama; Hideaki Asakuma; Roeland E Voorrips; Jianmin Fu; Ryutaro Tao

  G3 Genes|Genomes|Genetics, 29 May 2021, Corresponding author

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• Allelic distribution at SNP loci within bud dormancy-related QTLs in Japanese apricot (Prunus mume) collections

  T. Hsiang; W. Chen; H. Yamane; S. Nishiyama; R. Nakano; R. Tao

  Acta Horticulturae, May 2021

  
• Genomic insight into the developmental history of southern highbush blueberry populations.

  Soichiro Nishiyama; Mao Fujikawa; Hisayo Yamane; Kenta Shirasawa; Ebrahiem Babiker; Ryutaro Tao

  Heredity, Jan. 2021, Lead author, Corresponding author

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• Functional and expressional analyses of apple FLC-like in relation to dormancy progress and flower bud development.

  Soichiro Nishiyama; Miwako Cecile Matsushita; Hisayo Yamane; Chikako Honda; Kazuma Okada; Yosuke Tamada; Shigeki Moriya; Ryutaro Tao

  Tree physiology, 14 Nov. 2019, Lead author

  
• Changes in cytokinin metabolism in a small fruit mutant of ‘Hiratanenashi’ persimmon (Diospyros kaki Thunb.)

  I. Naito; S. Nishiyama; M. Gao-Takai; H. Yamane; R. Tao

  Acta Horticulturae, 30 Aug. 2018

  
• Comparative Mapping of the ASTRINGENCY Locus Controlling Fruit Astringency in Hexaploid Persimmon (Diospyros kaki Thunb.) with the Diploid D. lotus Reference Genome

  Nishiyama Soichiro; Onoue Noriyuki; Kono Atsushi; Sato Akihiko; Ushijima Koichiro; Yamane Hisayo; Tao Ryutaro; Yonemori Keizo

  HORTICULTURE JOURNAL, Jul. 2018, Lead author

  
• RNA-sequencing Analysis Identifies Genes Associated with Chilling-mediated Endodormancy Release in Apple

  Takeuchi Takanori; Matsushita Miwako Cecile; Nishiyama Soichiro; Yamane Hisayo; Banno Kiyoshi; Tao Ryutaro

  JOURNAL OF THE AMERICAN SOCIETY FOR HORTICULTURAL SCIENCE, May 2018, Lead author

  
• Identification of QTLs controlling chilling and heat requirements for dormancy release and bud break in Japanese apricot (Prunus mume)

  Yuto Kitamura; Tsuyoshi Habu; Hisayo Yamane; Soichiro Nishiyama; Kei Kajita; Takuya Sobue; Takashi Kawai; Koji Numaguchi; Tetsuya Nakazaki; Akira Kitajima; Ryutaro Tao

  Tree Genetics and Genomes, 01 Apr. 2018

  
• Characterization of a gene regulatory network underlying astringency loss in persimmon fruit.

  Soichiro Nishiyama; Noriyuki Onoue; Atsushi Kono; Akihiko Sato; Keizo Yonemori; Ryutaro Tao

  Planta, Mar. 2018, Lead author

  
• Differences in Physiological Characteristics and Gene Expression Levels in Fruits between Japanese Persimmon (Diospyros kaki Thunb.) ‘Hiratanenashi’ and Its Small Fruit Mutant ‘Totsutanenashi’

  羽生剛; 山根久代; 内藤一平; 西山総一郎; 野中亜優美; 河井崇; 山田寿; 田尾龍太郎

  Horticulture Journal, 2016

  
• EFFECT OF ABA TREATMENT ON TANNIN ACCUMULATION AT AN EARLY STAGE OF FRUIT DEVELOPMENT IN PERSIMMON

  S. Nishiyama; K. Yonemori; J. Ueda

  Acta Horticulturae, Jul. 2014

  
• IDENTIFICATION OF PLANT HORMONES IN ENDOSPERM LIQUID OF MANGOSTEEN FRUITS AT YOUNG DEVELOPMENTAL STAGES

  K. Yonemori; S. Nishiyama; C. Yapwattanaphun; J. Ueda

  Acta Horticulturae, Jul. 2014

  
• Development of Molecular Markers Associated with Sexuality in Diospyros lotus L. and Their Application in D-kaki Thunb

  Takashi Akagi; Kei Kajita; Takanori Kibe; Haruka Morimura; Tomoyuki Tsujimoto; Soichiro Nishiyama; Takashi Kawai; Hisayo Yamane; Ryutaro Tao

  JOURNAL OF THE JAPANESE SOCIETY FOR HORTICULTURAL SCIENCE, Jul. 2014

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Misc.

• Zero- / few-shot inference of phenological stages in fruit crops using multimodal approaches

  西山総一郎; Hsiang T. F.; 山根久代; 田尾龍太郎

  園芸学研究 別冊, 2025

  
• Exploring visualization methods for cell division localization in developing fruit tissues

  新保彩萌; 久住あかね; 西山総一郎; 田尾龍太郎

  園芸学研究 別冊, 2025

  
• Preliminary study of model systems for the rapid functional evaluation of genes controlling proanthocyanidins accumulation

  藤原陽介; 浅草遼太郎; 西山総一郎; 田尾龍太郎

  園芸学研究 別冊, 2025

  
• Construction of genetic linkage map in tetraploid blueberry through dpMIG-seq-based genotyping

  長坂京香; 西村和紗; 西村和紗; 山形啓悟; 西山総一郎; 山根久代; 中野龍平; 中崎鉄也; 中崎鉄也

  育種学研究, 2024

  
• Phenotypic and polymorphism analysis of persimmon individuals showing discrepancies between AST genotype and fruit astringency

  藤原陽介; 西山総一郎; 尾上典之; 松崎隆介; 河野淳; 佐藤明彦; 佐藤明彦; 米森敬三; 田尾龍太郎

  園芸学研究 別冊, 2024

  
• Genetic association between proanthocyanidin accumulation and sugar metabolism in persimmon fruit

  西山総一郎; 小畑賢太郎; 尾上典之; 藤原陽介; 松崎隆介; 河野淳; 佐藤明彦; 佐藤明彦; 長坂京香; 中野龍平; 米森敬三; 田尾龍太郎

  園芸学研究 別冊, 2024

  
• Analysis of tissue growth speed among different portions of persimmon fruit

  久住あかね; 西山総一郎; 田尾龍太郎

  園芸学研究 別冊, 2024

  
• Elucidation of the mechanism determining the diversity of vertical groove shapes characteristic in persimmon fruit

  久住あかね; 西山総一郎; 田尾龍太郎

  園芸学研究 別冊, 2024

  
• Graph-based phenotyping of grapevine architecture using Transformer and graph theory

  西山総一郎; 西山総一郎; ZAMORA Guillermo Garcia; GUEVARA Dario; EARLES Mason

  園芸学研究 別冊, 2024

  
• Identification of candidate genes controlling fruit astringency in hexaploid persimmon

  藤原陽介; 西山総一郎; 尾上典之; 松崎隆介; 山根久代; 米森敬三; 田尾龍太郎

  園芸学研究 別冊, 2024

  
• Non-destructive quality assessment of blueberry fruits using hyperspectral imaging

  今井美里; 山根久代; 西山総一郎; 田尾龍太郎

  園芸学研究 別冊, 2024

  
• Fruit phenomics in cultivated polyploid persimmons: Developmental and genomic perspectives

  久住あかね; 西山総一郎; 田尾龍太郎

  アグリバイオ, 2023

  
• Investigation of the mode of inheritance with a high-density linkage map in tetraploid blueberry

  長坂京香; 西村和紗; 元木航; 山形啓悟; 西山総一郎; 山根久代; 田尾龍太郎; 中野龍平; 中崎鉄也

  園芸学研究 別冊, 2023

  
• Association between tannin cell development and astringency in PCNA cultivars

  藤原陽介; 西山総一郎; 尾上典之; 米森敬三; 田尾龍太郎

  園芸学研究 別冊, 2022

  
• 3D-scanner aided quantification of changes in geometric parameters of fruit shape during persimmon fruit development

  久住あかね; 西山総一郎; 田尾龍太郎

  園芸学研究 別冊, 2022

  
• Three-dimensional imaging of persimmon tannin cells by electron microscopy and machine learning

  西山総一郎; 田尾龍太郎; 米森敬三

  園芸学研究 別冊, 2022

  
• The relationship between preference and sensory attributes of blueberry fruit

  平岩尚樹; 山根久代; 西山総一郎; 田尾龍太郎

  園芸学研究 別冊, 2022

  
• Origin and pleiotropy of the fruit size mutation in ‘Hiratanenashi’ bud sports

  西山総一郎; WANG S.; TAM Chun-Lai; 田尾龍太郎

  園芸学研究 別冊, 2021

  
• Genome wide association study in a southern highbush blueberry population based on polyploid model

  長坂京香; 西山総一郎; 藤川真央; 山根久代; 白澤健太; BABIKER Ebrahiem; 田尾龍太郎

  園芸学研究 別冊, 2021

  
• Application of deep-learning for detection and cultivar classification of persimmon fruits in a field environment

  久住あかね; 大迫祐太朗; 中野龍平; 西山総一郎; 田尾龍太郎

  園芸学研究 別冊, 2021

  
• Highbush blueberry fruit development affected by pollen donor

  長坂京香; 山根久代; 西山総一郎; 海老原脩; 松崎隆介; 庄子雅和; 田尾龍太郎

  園芸学研究 別冊, 2021

  
• Development of a marker set optimization algorithm for identifying pollen parent of seedling

  西山総一郎; 田尾龍太郎

  園芸学研究 別冊, 2021

  
• Identification of candidate genes controlling fruit astringency in persimmon

  藤原陽介; 西山総一郎; 尾上典之; 松崎隆介; 米森敬三; 田尾龍太郎

  園芸学研究 別冊, 2021

  
• Genome-wide association study on agronomic traits in southern highbush blueberry

  西山総一郎; 藤川真央; 山根久代; 白澤健太; BABIKER Ebrahiem; 田尾龍太郎

  園芸学研究 別冊, 2020

  
• Intra-clonal genetic variation in ’Hiratanenashi’ Nonaploid persimmon

  西山総一郎; WANG S.; 田尾龍太郎

  育種学研究, 2020

  
• Genetic Diversity and Population Structure Analysis of Vaccinium Corymbosum Assessed By Double Digest Restriction-Site Associated DNA Sequencing

  Babiker Ebrahiem; Fujikawa Mao; Tao Ryutaro; Yamane Hisayo; Nishiyama Soichiro; Shirasawa Kenta

  HORTSCIENCE, Sep. 2019

  
• トランスクリプトーム解析による日本タイプ完全甘と中国タイプ完全甘のPA蓄積制御メカニズムの比較

  西山総一郎; 尾上典之; 河野淳; 佐藤明彦; 田尾龍太郎; 米森敬三

  園芸学研究 別冊, 2019

  
• カキの果実発達を制御する遺伝子発現ネットワーク

  西山総一郎; 尾上典之; 河野淳; 佐藤明彦; 米森敬三; 田尾龍太郎

  園芸学研究 別冊, 2019

  
• ddRAD-seq法によるハイブッシュブルーベリーの集団構造解析

  藤川真央; BABIKER Ebrahiem; 西山総一郎; 山根久代; 白澤健太; 田尾龍太郎

  園芸学研究 別冊, 2019

  
• カキ甘渋性決定遺伝子座の多様性解析

  西山総一郎; 藏本晃栄; 尾上典之; 河野淳; 佐藤明彦; 米森敬三; 田尾龍太郎

  園芸学研究 別冊, 2018

  
• カキ甘渋性に関する共発現ネットワーク解析

  西山総一郎; 尾上典之; 河野淳; 佐藤明彦; 米森敬三; 田尾龍太郎

  園芸学研究 別冊, 2017

  
• カキ甘渋性決定遺伝子座とシンテニィのあるマメガキゲノム領域の解析

  西山総一郎; 尾上典之; 河野淳; 佐藤明彦; 牛島幸一郎; 山根久代; 田尾龍太郎; 米森敬三

  園芸学研究 別冊, 2017

  
• カキ甘渋性に関するトランスクリプトーム解析

  西山総一郎; 尾上典之; 河野淳; 佐藤明彦; 米森敬三; 田尾龍太郎

  園芸学研究 別冊, 2016

  
• ‘平核無’の小果突然変異体‘突核無’の果実におけるサイトカイニン含量および遺伝子発現の変化

  内藤一平; 西山総一郎; 高居恵愛; 山根久代; 田尾龍太郎

  園芸学研究 別冊, 2016

  
• Comparative genomics of the locus controlling astringency in Diospyros species.

  Nishiyama, S; A. Kono; N. Onoue; A. Sato; K. Ushijima; H. Yamane; R. Tao; K. Yonemori

  Abst. Plant & Animal Genome, 2016

  
• Effectiveness of Molecular Markers for Detecting the Non-astringent Trait of Chinese Persimmon and a Trial to Identify the Gene Conferring Chinese PCNA Trait in 'Luo Tian Tian Shi'

  Keizo Yonemori; Soichiro Nishiyama; Hisayo Yamane; Akihiko Sato

  HORTSCIENCE, Sep. 2015

  
• マメガキを用いたカキの甘渋性決定遺伝子座の比較ゲノム解析

  西山総一郎; 佐藤明彦; 河野淳; 尾上典之; 牛島幸一郎; 山根久代; 田尾龍太郎; 米森敬三

  園芸学研究 別冊, 2015

  

Presentations

• 倍数性果樹のゲノム特性-カキとブルーベリーの育種努力の歴史と展望-

  西山総一郎

  「高次倍数体をどうにかする会」2021冬, 23 Dec. 2021, Invited

  
• Physiological and genetic characterization of ‘Totsutanenashi’, a nonaploid persimmon mutant bearing extremely small size fruit

  Soichiro Nishiyama; Chiho Iwami; Sheng Wang; ChunLai Tam; Ryutaro Tao

  7th International Symposium on Persimmon, 23 Sep. 2021

  
• DNA sequence diversity of the astringency-controlling locus in Diospyros kaki

  Tao, R; A. Kuramoto; S. Nishiyama

  7th International Symposium on Persimmon, 24 Sep. 2021

  
• 高次倍数体のSNP検出

  西山総一郎

  園芸作物バイオインフォマティクス入門3, 10 Sep. 2021, Invited

  
• Characterization of population structure and genetic variation of chilling requirement in southern highbush blueberry

  Nishiyama, S; M. Fujikawa; H. Yamane; K. Shirasawa; E. Babiker; R. Tao

  XII International Vaccinium Symposium, 30 Aug. 2021

  
• Genome-wide association mapping of phenology-ralted traits in southern highbush blueberry using ddRAD-seq

  Babiker, E; K. Nagasaka; S. Nishiyama; M. Fujikawa; H. Yamane; R. Tao

  Annual meeting of American Society for Horticultural Science, 05 Aug. 2021

  
• Genetic analysis of proanthocyanidin accumulation in hexaploid persimmon

  Soichiro Nishiyama

  The 4th KU-KUGSA Bilateral Symposium, 05 Dec. 2018, Invited

  
• Genetics of proanthocyanidins accumulation control in persimmon fruit

  Soichiro Nishiyama

  HZAU-NTU-KU Joint Horticulture Symposium, 03 Sep. 2018, Invited

  
• カキ甘渋性の分子制御機構解明にむけて

  西山総一郎

  福井県立大学 生物資源学先端セミナー, 17 Jul. 2018, Invited

  
• Toward isolation of a gene conferring astringency loss in persimmon fruit

  Nishiyama, S; N. Onoue; A. Kono; A. Sato; K. Yonemori; R. Tao

  Plant and Animal Genome XXV, 17 Jan. 2017

  
• Transcriptome analysis for astringency in persimmon fruit

  Nishiyama, S; N. Onoue; A. Kono; A. Sato; K. Yonemori; R. Tao

  The ISHS VI International Symposium on Persimmon, 17 Oct. 2016

  

External funds: Kakenhi

• Toward novel approaches in polyploid fruit tree breeding through genomics and fruit phenomics

  Fund for the Promotion of Joint International Research (Fostering Joint International Research (A))

  Basic Section 39030:Horticultural science-related

  Kyoto University

  Soichiro Nishiyama

  From 01 Apr. 2022, To 31 Mar. 2025, Project Closed

  果樹;育種;倍数性;機械学習;ゲノミクス;カキ;果実発達;ゲノム

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-21KK0269/
• Epigenetic regulation system involved in blueberry ripening and coloration

  Grant-in-Aid for Challenging Research (Exploratory)

  Medium-sized Section 39:Agricultural and environmental biology and related fields

  Kyoto University

  Hisayo Yamane

  From 09 Jul. 2021, To 31 Mar. 2025, Project Closed

  果樹;果実成熟;DNAメチル化;ゲノム編集;トランスポゾン;着色;アントシアニン;MYB;エピジェネティクス

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-21K19113/
• Identification and functional analysis of genetic factors controlling fruit astringency in persimmon

  Grant-in-Aid for Early-Career Scientists

  Basic Section 39030:Horticultural science-related

  Kyoto University

  Soichiro Nishiyama

  From 01 Apr. 2021, To 31 Mar. 2024, Discontinued

  果樹;プロアントシアニジン;倍数性;果実品質;ゲノム;ゲノム解析

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-21K14848/
• Research on persimmon plants to induce a paradigm shift in crop science research

  Grant-in-Aid for Challenging Research (Pioneering)

  Medium-sized Section 39:Agricultural and environmental biology and related fields

  Kyoto University

  Ryutaro TAO

  From 01 Apr. 2020, To 31 Mar. 2025, Project Closed

  果樹;遺伝子情報;機械学習;果実形状;遺伝子機能評価;倍数体

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-20K20454/
• Analysis on proanthocyanidin accumulation in tannin cells of persimmon fruit concerned with their morphological features and molecular mechanisms in persimmon fruits.

  Grant-in-Aid for Scientific Research (C)

  Basic Section 39030:Horticultural science-related

  Ryukoku University

  Keizo Yonemori

  From 01 Apr. 2020, To 31 Mar. 2025, Project Closed

  カキ;渋味;タンニン細胞;果樹;蓄積制御

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-20K06038/
• Establishment of the consumer-oriented breeding system in blueberry based on genomic and cognitive sciences

  Fund for the Promotion of Joint International Research (Fostering Joint International Research (B))

  Medium-sized Section 39:Agricultural and environmental biology and related fields

  Kyoto University

  RYUTARO TAO

  From 07 Oct. 2019, To 31 Mar. 2024, Project Closed

  果樹;園芸;嗜好性;栽培化;倍数体

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-19KK0156/
• Understanding the mechanism of fruit size control with a focus on a persimmon small fruit mutant

  Grant-in-Aid for Early-Career Scientists

  Basic Section 39030:Horticultural science-related

  Kyoto University

  Soichiro Nishiyama

  From 01 Apr. 2019, To 31 Mar. 2021, Project Closed

  果樹;ゲノム;倍数体;トランスクリプトーム;果実発達;果実品質;倍数性;器官サイズ;全ゲノム解析;枝変わり

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-19K15832/
• カキ果実におけるプロアントシアニジン蓄積制御機構解明

  Grant-in-Aid for Research Activity Start-up

  0602:Agricultural and environmental biology and related fields

  Kyoto University

  西山 総一郎

  From 24 Aug. 2018, To 31 Mar. 2020, Project Closed

  園芸学;果実;二次代謝;トランスクリプトーム;ゲノム;倍数性;甘渋性;倍数体ゲノム;フラボノイド

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-18H06008/
• カキの特異なプロアントシアニジン蓄積の基盤となる分子遺伝学的機構の解明と応用

  Grant-in-Aid for Scientific Research (B)

  Basic Section 39030:Horticultural science-related

  Kyoto University

  西山 総一郎

  From 01 Apr. 2023, To 31 Mar. 2027, Granted

  果樹;育種;倍数性;二次代謝;ゲノミクス

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-23H02202/
• カキの特異なプロアントシアニジン蓄積の基盤となる分子遺伝学的機構の解明と応用

  Grant-in-Aid for Scientific Research (B)

  Basic Section 39030:Horticultural science-related

  Kyoto University

  西山 総一郎

  From 01 Apr. 2024, To 31 Mar. 2027, Granted

  果樹;育種;倍数性;二次代謝;ゲノミクス

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-23K26895/
• サクラ属果樹に特異な自家不和合性の機構解明と人為制御に向けた新しいアプローチ

  Grant-in-Aid for Scientific Research (A)

  Medium-sized Section 39:Agricultural and environmental biology and related fields

  Kyoto University

  田尾 龍太郎

  From 01 Apr. 2024, To 31 Mar. 2028, Granted

  果樹;受粉受精;不和合性反応;不和合性共通遺伝子;花粉管伸長;不和合性共通因子

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-24H00510/
• Phenotypic plasticity of rooting ability in cuttings of difficult-to-root fruit trees and its applied studies

  Grant-in-Aid for Scientific Research (C)

  Basic Section 39030:Horticultural science-related

  University of Miyazaki

  鉄村 琢哉

  From 01 Apr. 2025, To 31 Mar. 2029, Granted

  カキ;クリ;ホルモノーム解析;トランスクリプトーム解析;エピゲノム解析

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-25K09108/
• Epigenetic regulation system involved in physiological and genetic regulation of bud dormancy in fruit trees

  Grant-in-Aid for Scientific Research (B)

  Basic Section 39030:Horticultural science-related

  Kyoto University

  山根 久代

  From 01 Apr. 2025, To 31 Mar. 2029, Granted

  果樹;休眠;エピジェネティック制御

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-25K02008/

Education

Teaching subject(s)

• From 01 Apr. 2025, To 31 Mar. 2026

  Special Laboratory Work in Pomology

  AG04, Spring, Graduate School of Agriculture, 2.5
• From 01 Apr. 2025, To 31 Mar. 2026

  Special Laboratory Work in Pomology

  AG04, Fall, Graduate School of Agriculture, 2.5
• From 01 Apr. 2025, To 31 Mar. 2026

  Laboratory Course in Plant Production Science I

  5357, Spring, Faculty of Agriculture, 6
• From 01 Apr. 2025, To 31 Mar. 2026

  Laboratory Course in Plant Production Science II

  5359, Fall, Faculty of Agriculture, 6
• From 01 Apr. 2025, To 31 Mar. 2026

  Pomology Seminar

  AF04, Spring, Graduate School of Agriculture, 2
• From 01 Apr. 2025, To 31 Mar. 2026

  Pomology Seminar

  AF04, Fall, Graduate School of Agriculture, 2
• From 01 Apr. 2025, To 31 Mar. 2026

  Molecular Plant Breeding

  5375, Fall, Faculty of Agriculture, 2
• From 01 Apr. 2025, To 31 Mar. 2026

  Seminar in Horticultural Science

  5285, Year-long, Faculty of Agriculture, 2
• From 01 Apr. 2024, To 31 Mar. 2025

  Special Laboratory Work in Pomology

  AG04, Spring, Graduate School of Agriculture, 2.5
• From 01 Apr. 2024, To 31 Mar. 2025

  Special Laboratory Work in Pomology

  AG04, Fall, Graduate School of Agriculture, 2.5
• From 01 Apr. 2024, To 31 Mar. 2025

  Pomology Seminar

  AF04, Spring, Graduate School of Agriculture, 2
• From 01 Apr. 2024, To 31 Mar. 2025

  Pomology Seminar

  AF04, Fall, Graduate School of Agriculture, 2
• From 01 Apr. 2024, To 31 Mar. 2025

  Seminar in Horticultural Science

  5285, Year-long, Faculty of Agriculture, 2
• From 01 Apr. 2024, To 31 Mar. 2025

  Molecular Plant Breeding

  5375, Fall, Faculty of Agriculture, 2
• From 01 Apr. 2023, To 31 Mar. 2024

  Special Laboratory Work in Pomology2

  AC35, Year-long, Graduate School of Agriculture, 5
• From 01 Apr. 2023, To 31 Mar. 2024

  Special Laboratory Work in Pomology1

  AC34, Year-long, Graduate School of Agriculture, 5
• From 01 Apr. 2023, To 31 Mar. 2024

  Pomology Seminar2

  AB17, Year-long, Graduate School of Agriculture, 4
• From 01 Apr. 2023, To 31 Mar. 2024

  Pomology Seminar1

  AB16, Year-long, Graduate School of Agriculture, 4
• From 01 Apr. 2023, To 31 Mar. 2024

  Molecular Plant Breeding

  5375, Fall, Faculty of Agriculture, 2
• From 01 Apr. 2023, To 31 Mar. 2024

  Seminar in Horticultural Science

  5285, Year-long, Faculty of Agriculture, 2
• From 01 Apr. 2022, To 31 Mar. 2023

  Special Laboratory Work in Pomology2

  AC35, Year-long, Graduate School of Agriculture, 5
• From 01 Apr. 2022, To 31 Mar. 2023

  Pomology Seminar1

  AB16, Year-long, Graduate School of Agriculture, 4
• From 01 Apr. 2022, To 31 Mar. 2023

  Seminar in Horticultural Science

  5285, Year-long, Faculty of Agriculture, 2
• From 01 Apr. 2022, To 31 Mar. 2023

  Special Laboratory Work in Pomology1

  AC34, Year-long, Graduate School of Agriculture, 5
• From 01 Apr. 2022, To 31 Mar. 2023

  Pomology Seminar2

  AB17, Year-long, Graduate School of Agriculture, 4
• From Apr. 2020, To Mar. 2021

  Seminar in Horticultural Science

  Year-long, 農学部
• From Apr. 2020, To Mar. 2021

  Special Laboratory Work in Pomology1

  Year-long, 農学研究科
• From Apr. 2020, To Mar. 2021

  Special Laboratory Work in Pomology2

  Year-long, 農学研究科
• From Apr. 2020, To Mar. 2021

  Pomology Seminar1

  Year-long, 農学研究科
• From Apr. 2020, To Mar. 2021

  Pomology Seminar2

  Year-long, 農学研究科
• From Apr. 2021, To Mar. 2022

  Seminar in Horticultural Science

  Year-long, 農学部
• From Apr. 2021, To Mar. 2022

  Special Laboratory Work in Pomology1

  Year-long, 農学研究科
• From Apr. 2021, To Mar. 2022

  Special Laboratory Work in Pomology2

  Year-long, 農学研究科
• From Apr. 2021, To Mar. 2022

  Pomology Seminar1

  Year-long, 農学研究科
• From Apr. 2021, To Mar. 2022

  Pomology Seminar2

  Year-long, 農学研究科

Administration

Faculty management (title, position)

• From 01 Apr. 2025, To 31 Mar. 2027

  環境・安全・衛生委員会　委員
• From 01 Apr. 2024, To 31 Mar. 2026

  広報委員会　委員
• From 01 Apr. 2021, To 31 Mar. 2023

  情報セキュリティ・システム委員会　委員