Basic Information

Email Address

• Email Address

  ishikawa.masato.7vkyoto-u.ac.jp

Academic Degree

• 23 Mar. 2020

  東京大学修士（科学）

Academic Resume (Undergraduate School/Majors)

• 東京大学, 理学部生物情報科学科, 卒業

ID,URL

• J-Global ID

  202301001791143327

researchmap URL

• https://researchmap.jp/masatoiskw

Research

Papers

• Inferring extrinsic factor-dependent single-cell transcriptome dynamics using a deep generative model

  Yasuhiro Kojima; Yuko Arioka; Haruka Hirose; Shuto Hayashi; Yusuke Mizuno; Keiki Nagaharu; Hiroki Okumura; Masato Ishikawa; Kohshi Ohishi; Yutaka Suzuki; Norio Ozaki; Teppei Shimamura

  01 Apr. 2024

  
• Single-cell colocalization analysis using a deep generative model

  Yasuhiro Kojima; Shinji Mii; Shuto Hayashi; Haruka Hirose; Masato Ishikawa; Masashi Akiyama; Atsushi Enomoto; Teppei Shimamura

  Cell Systems, Feb. 2024, Peer-reviewed

  
• RENGE infers gene regulatory networks using time-series single-cell RNA-seq data with CRISPR perturbations

  Masato Ishikawa; Seiichi Sugino; Yoshie Masuda; Yusuke Tarumoto; Yusuke Seto; Nobuko Taniyama; Fumi Wagai; Yuhei Yamauchi; Yasuhiro Kojima; Hisanori Kiryu; Kosuke Yusa; Mototsugu Eiraku; Atsushi Mochizuki

  Communications Biology, 28 Dec. 2023, Peer-reviewed, Lead author, Corresponding author

  Access this paper :

  
• Constrained vertebrate evolution by pleiotropic genes

  Haiyang Hu; Masahiro Uesaka; Song Guo; Kotaro Shimai; Tsai-Ming Lu; Fang Li; Satoko Fujimoto; Masato Ishikawa; Shiping Liu; Yohei Sasagawa; Guojie Zhang; Shigeru Kuratani; Jr-Kai Yu; Takehiro G. Kusakabe; Philipp Khaitovich; Naoki Irie

  Nature Ecology & Evolution, 25 Sep. 2017, Peer-reviewed

  

Misc.

• Regulation of cell fate by manipulation of dynamics of gene regulatory network

  樽本雄介; 杉野成一; 山内悠平; 石川雅人; 和穎文; 永樂元次; 望月敦史; 遊佐宏介

  日本ゲノム編集学会大会要旨集, 2024

  
• Inferring gene regulatory networks based on expression dynamics induced by gene perturbations

  石川雅人; 杉野成一; 増田芳恵; 樽本雄介; 瀬戸裕介; 谷山暢子; 和穎文; 山内悠平; 小嶋泰弘; 木立尚孝; 遊佐宏介; 永樂元次; 望月敦史

  日本数理生物学会年会(Web), 2024

  

Presentations

• Inferring the regulatory function underlying gene expression dynamics by integrating gene regulatory networks

  Masato Ishikawa; Atsushi Mochizuki

  Asia & Pacific Bioinformatics Joint Conference (APBJC2024), Oct. 2024

  
• 摂動後の発現ダイナミクスに基づく遺伝子制御ネットワーク推定

  石川雅人

  NGS EXPO 2024, 05 Sep. 2024, Invited

  
• 情報科学と力学系理論に基づく遺伝子発現ダイナミクスのモデル推定

  石川雅人

  バイオインフォマティクス分野講演会, Jan. 2024, Invited

  
• Inference of gene regulatory networks based on expression dynamics induced by gene perturbations

  Masato Ishikawa

  OKO International Symposium 2023, Aug. 2023, Invited

  
• 摂動後の発現時系列データを用いた遺伝子制御ネットワーク推定法

  石川雅人; 永樂 元次; 遊佐 宏介; 山内 悠平; 木立 尚孝; 望月 敦史

  第60回日本生物物理学会年会, Sep. 2022, Invited

  

External funds: others

• 遺伝子制御ダイナミクスに基づく細胞運命操作

  科学技術振興機構, 戦略的創造研究推進事業 ACT-X

  From 2024, To 2026

  石川雅人