Basic Information

Faculty

• 農学部

Academic Degree

• Master of Science, Biostudies(Kyoto University)
• Ph.D., Biostudies(Kyoto University)

ID,URL

• ORCID ID

  0000-0002-9390-0432

• J-Global ID

  201801016195358666

researchmap URL

• https://researchmap.jp/7000023445

Research

Research Topics, Overview of the research

• Research Topics

  Environmental responses in plants

• Overview of the research

  My research interest is plant environmental responses, especially light signaling. Using an angiosperm Arabidopsis thaliana and a liverwort Marchantia polymorpha, we have been investigating evolution of molecular mechanisms for light signaling.

Research Areas

• Life sciences, Plants: molecular biology and physiology

Papers

• Non-canonical BZR/BES transcription factor regulates the developmental process of haploid reproductive organs in the liverwort Marchantia polymorpha

  Tomoyuki Furuya; Natsumi Saegusa; Shohei Yamaoka; Yuki Tomoita; Naoki Minamino; Masaki Niwa; Keisuke Inoue; Chiaki Yamamoto; Kazuki Motomura; Shunji Shimadzu; Ryuichi Nishihama; Kimitsune Ishizaki; Takashi Ueda; Hidehiro Fukaki; Takayuki Kohchi; Hiroo Fukuda; Masahiro Kasahara; Takashi Araki; Yuki Kondo

  Nature Plants, 11 Apr. 2024, Peer-reviewed

  
• Circadian clock does not play an essential role in daylength measurement for growth-phase transition in Marchantia polymorpha

  Yuki Kanesaka; Keisuke Inoue; Yuki Tomita; Shohei Yamaoka; Takashi Araki

  Frontiers in Plant Science, 08 Nov. 2023, Peer-reviewed

  
• Biosynthesis of gibberellin-related compounds modulates far-red light responses in the liverwort Marchantia polymorpha

  Rui Sun; Maiko Okabe; Sho Miyazaki; Toshiaki Ishida; Kiyoshi Mashiguchi; Keisuke Inoue; Yoshihiro Yoshitake; Shohei Yamaoka; Ryuichi Nishihama; Hiroshi Kawaide; Masatoshi Nakajima; Shinjiro Yamaguchi; Takayuki Kohchi

  The Plant Cell, 19 Aug. 2023

  Access this paper :

  
• A guiding role of the Arabidopsis circadian clock in cell differentiation revealed by time-series single-cell RNA sequencing.

  Kotaro Torii; Keisuke Inoue; Keita Bekki; Kazuya Haraguchi; Minoru Kubo; Yuki Kondo; Takamasa Suzuki; Akane Kubota; Kyohei Uemoto; Hanako Shimizu; Masato Saito; Hiroo Fukuda; Takashi Araki; Motomu Endo

  Cell reports, 12 Jul. 2022, Peer-reviewed, Lead author

  Access this paper :

  
• Coordination between growth and stress responses by DELLA in the liverwort Marchantia polymorpha.

  Jorge Hernández-García; Rui Sun; Antonio Serrano-Mislata; Keisuke Inoue; Carlos Vargas-Chávez; David Esteve-Bruna; Vicent Arbona; Shohei Yamaoka; Ryuichi Nishihama; Takayuki Kohchi; Miguel A Blázquez

  Current biology : CB, 23 Aug. 2021, Peer-reviewed

  
• Regulation of gametangia and gametangiophore initiation in the liverwort Marchantia polymorpha.

  Shohei Yamaoka; Keisuke Inoue; Takashi Araki

  Plant reproduction, 11 Jun. 2021, Peer-reviewed

  
• Major components of the KARRIKIN INSENSITIVE2-dependent signaling pathway are conserved in the liverwort Marchantia polymorpha

  Yohei Mizuno; Aino Komatsu; Shota Shimazaki; Satoshi Naramoto; Keisuke Inoue; Xiaonan Xie; Kimitsune Ishizaki; Takayuki Kohchi; Junko Kyozuka

  The Plant Cell, 11 Apr. 2021, Peer-reviewed

  
• An early arising role of microRNA156/529c-SPL module in reproductive development revealed by the liverwort Marchantia polymorpha.

  M. Tuzuki; K. Futagami; M. Shimamura; C. Inoue; K. Kunimoto; T. Oogami; Y. Tomita; K. Inoue; T. Kohchi; S. Yamaoka; T. Araki; T. Hamada; Y. Watanabe

  Current Biology, Oct. 2019, Peer-reviewed

  
• Reproductive induction is a far-red high irradiance response that is mediated by phytochrome and PHYTOCHROME INTERACTING FACTOR in Marchantia polymorpha.

  Inoue K; Nishihama R; Araki T; Kohchi T

  Plant & Cell Physiology, May 2019, Peer-reviewed, Lead author, Corresponding author

  
• Phytochrome and Light Signaling in Marchantia.

  Inoue K; Nishihama R; Kohchi T

  Methods in molecular biology (Clifton, N.J.), 2019, Peer-reviewed, Lead author

  
• Generative Cell Specification Requires Transcription Factors Evolutionarily Conserved in Land Plants.

  Shohei Yamaoka; Ryuichi Nishihama; Yoshihiro Yoshitake; Sakiko Ishida; Keisuke Inoue; Misaki Saito; Keitaro Okahashi; Haonan Bao; Hiroyuki Nishida; Katsushi Yamaguchi; Shuji Shigenobu; Kimitsune Ishizaki; Katsuyuki T Yamato; Takayuki Kohchi

  Current biology : CB, 05 Feb. 2018, Peer-reviewed

  
• Circadian clock during plant development

  Keisuke Inoue; Takashi Araki; Motomu Endo

  Journal of Plant Research, 01 Jan. 2018, Peer-reviewed, Lead author

  
• Circadian clock during plant development

  Keisuke Inoue; Takashi Araki; Motomu Endo

  Journal of Plant Research, 01 Jan. 2018, Peer-reviewed, Lead author

  
• Evolutionary origin of phytochrome responses and signaling in land plants

  Keisuke Inoue; Ryuichi Nishihama; Takayuki Kohchi

  PLANT CELL AND ENVIRONMENT, Nov. 2017, Peer-reviewed, Lead author

  
• Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome.

  John L Bowman; Takayuki Kohchi; Katsuyuki T Yamato; Jerry Jenkins; Shengqiang Shu; Kimitsune Ishizaki; Shohei Yamaoka; Ryuichi Nishihama; Yasukazu Nakamura; Frédéric Berger; Catherine Adam; Shiori Sugamata Aki; Felix Althoff; Takashi Araki; Mario A Arteaga-Vazquez; Sureshkumar Balasubrmanian; Kerrie Barry; Diane Bauer; Christian R Boehm; Liam Briginshaw; Juan Caballero-Perez; Bruno Catarino; Feng Chen; Shota Chiyoda; Mansi Chovatia; Kevin M Davies; Mihails Delmans; Taku Demura; Tom Dierschke; Liam Dolan; Ana E Dorantes-Acosta; D Magnus Eklund; Stevie N Florent; Eduardo Flores-Sandoval; Asao Fujiyama; Hideya Fukuzawa; Bence Galik; Daniel Grimanelli; Jane Grimwood; Ueli Grossniklaus; Takahiro Hamada; Jim Haseloff; Alexander J Hetherington; Asuka Higo; Yuki Hirakawa; Hope N Hundley; Yoko Ikeda; Keisuke Inoue; Shin-Ichiro Inoue; Sakiko Ishida; Qidong Jia; Mitsuru Kakita; Takehiko Kanazawa; Yosuke Kawai; Tomokazu Kawashima; Megan Kennedy; Keita Kinose; Toshinori Kinoshita; Yuji Kohara; Eri Koide; Kenji Komatsu; Sarah Kopischke; Minoru Kubo; Junko Kyozuka; Ulf Lagercrantz; Shih-Shun Lin; Erika Lindquist; Anna M Lipzen; Chia-Wei Lu; Efraín De Luna; Robert A Martienssen; Naoki Minamino; Masaharu Mizutani; Miya Mizutani; Nobuyoshi Mochizuki; Isabel Monte; Rebecca Mosher; Hideki Nagasaki; Hirofumi Nakagami; Satoshi Naramoto; Kazuhiko Nishitani; Misato Ohtani; Takashi Okamoto; Masaki Okumura; Jeremy Phillips; Bernardo Pollak; Anke Reinders; Moritz Rövekamp; Ryosuke Sano; Shinichiro Sawa; Marc W Schmid; Makoto Shirakawa; Roberto Solano; Alexander Spunde; Noriyuki Suetsugu; Sumio Sugano; Akifumi Sugiyama; Rui Sun; Yutaka Suzuki; Mizuki Takenaka; Daisuke Takezawa; Hirokazu Tomogane; Masayuki Tsuzuki; Takashi Ueda; Masaaki Umeda; John M Ward; Yuichiro Watanabe; Kazufumi Yazaki; Ryusuke Yokoyama; Yoshihiro Yoshitake; Izumi Yotsui; Sabine Zachgo; Jeremy Schmutz

  Cell, 05 Oct. 2017, Peer-reviewed

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• Oscillator networks with tissue-specific circadian clocks in plants.

  Inoue K; Araki T; Endo M

  Seminars in cell & developmental biology, Sep. 2017, Peer-reviewed, Lead author

  
• Integration of Input Signals into the Gene Network in the Plant Circadian Clock

  Keisuke Inoue; Takashi Araki; Motomu Endo

  PLANT AND CELL PHYSIOLOGY, Jun. 2017, Peer-reviewed, Lead author

  
• Phytochrome Signaling Is Mediated by PHYTOCHROME INTERACTING FACTOR in the Liverwort Marchantia polymorpha

  Keisuke Inoue; Ryuichi Nishihama; Hideo Kataoka; Masashi Hosaka; Ryo Manabe; Mika Nomoto; Yasuomi Tada; Kimitsune Ishizaki; Takayuki Kohchi

  PLANT CELL, Jun. 2016, Peer-reviewed, Lead author

  
• Development of Gateway Binary Vector Series with Four Different Selection Markers for the Liverwort Marchantia polymorpha

  Kimitsune Ishizaki; Ryuichi Nishihama; Minoru Ueda; Keisuke Inoue; Sakiko Ishida; Yoshiki Nishimura; Toshiharu Shikanai; Takayuki Kohchi

  PLOS ONE, Sep. 2015, Peer-reviewed

  Access this paper :

  
• 基部陸上植物の光応答戦略−フィトクロムを介した光形態形成の分子機構−

  ISHIZAKI KIMITSUNE; 井上 佳祐; 河内 孝之

  植物科学の最前線, 2013

  

Misc.

• Transcriptional regulatory network for male gametogenesis in the liverwort Marchantia polymorpha

  井上佳祐; 井上佳祐; 小谷莞太; 穴田小恵; 肥後あすか; 山岡尚平; 荒木崇

  日本植物生理学会年会(Web), 2024

  
• Role of male gamete-specific small RNA pathways on spermatogenesis in Marchantia polymorpha

  穴田小恵; PAN Zhao-Jun; SHEN Bing-Nan; 小谷莞太; 肥後あすか; 山岡尚平; 井上佳祐; LIN Shih-Shun; 荒木崇

  日本植物生理学会年会(Web), 2024

  
• Cell-type specific clock system regulates plant cell fate

  鳥井孝太郎; 井上佳祐; 別城啓太; 荒木崇; 遠藤求

  時間生物学, 2018

  
• ゼニゴケの生活環において多面的に機能する転写因子MpLRLの発現解析

  樅木亮介; 齊藤美咲; 吉竹良洋; 井上佳祐; 河内孝之; 荒木崇; 山岡尚平

  日本植物学会大会研究発表記録(CD-ROM), 2022

  
• ゼニゴケの生活環におけるMpMS1の機能解析

  三枝菜摘; 國本完; 肥後あすか; 神原泉; 冨田由妃; 井上佳祐; 山岡尚平; 荒木崇

  日本植物学会大会研究発表記録(CD-ROM), 2022

  
• 苔類ゼニゴケの成長相転換制御における日長認識機構の解析

  金坂侑紀; 井上佳祐; 山岡尚平; 荒木崇

  日本植物学会大会研究発表記録(CD-ROM), 2021

  
• Origination of the circadian clock system in stem cells regulates cell differentiation

  Kotaro Torii; Keisuke Inoue; Keita Bekki; Kazuya Haraguchi; Minoru Kubo; Yuki Kondo; Takamasa Suzuki; Hanako Shimizu; Kyohei Uemoto; Masato Saito; Hiroo Fukuda; Takashi Araki; Motomu Endo

  22 Jul. 2019

  
• The role of germ cell-specific histone H1 variants during spermiogenesis in Marchantia polymorpha

  KOTANI Kanta; NISHIDA Ruri; HIGO Asuka; YAMAOKA Shohei; INOUE Keisuke; ARAKI Takashi

  日本植物生理学会年会(Web), 2021

  
• Molecular mechanism for far-red light- and photoperiod-dependent growth phase transition in Marchantia polymorpha

  KANESAKA Yuki; INOUE Keisuke; YAMAOKA Shohei; ARAKI Takashi

  日本植物生理学会年会(Web), 2021

  
• Molecular Mechanism For Day-length Perception In The Basal Land Plant Marchantia polymorpha

  INOUE Keisuke; KANESAKA Yuki; YAMAOKA Shohei; NISHIHAMA Ryuichi; KOHCHI Takayuki; ARAKI Takashi

  日本植物生理学会年会(Web), 2020

  
• Analysis of germ cell-specific histone H1 variants involved in spermiogenesis in Marchantia

  KOTANI Kanta; NISHIDA Ruri; HIGO Asuka; INOUE Keisuke; YAMAOKA Shohei; ARAKI Takashi

  日本植物生理学会年会(Web), 2020

  
• ゼニゴケの生殖器官形成における光質と日長の役割

  金坂侑紀; 井上佳祐; 山岡尚平; 西浜竜一; 河内孝之; 荒木崇

  日本植物学会大会研究発表記録, 2019

  
• フィトクロムを介した遠赤色光シグナルはゼニゴケの生殖器官形成を制御する

  井上佳祐; 金坂侑紀; 山岡尚平; 西浜竜一; 河内孝之; 荒木崇

  日本植物学会大会研究発表記録, 2019

  
• Gibberellin Precursor Is Involved in Sexual Organ Formation in the Liverwort Marchantia polymorpha

  SUN Rui; WANG Ran; KUSUNOKI Ryunosuke; INOUE Keisuke; NISHIHAMA Ryuichi; YAMAOKA Shohei; KOHCHI Takayuki

  日本植物生理学会年会(Web), 2019

  
• 陸上植物の生殖細胞分化に必要な転写因子BONOBOの同定と標的遺伝子の探索

  山岡尚平; 西浜竜一; 吉竹良洋; 石田咲子; 井上佳祐; 齋藤美咲; 岡橋啓太郎; 包昊南; 西田浩之; 山口勝司; 重信秀治; 石崎公庸; 大和勝幸; 河内孝之

  日本植物学会大会研究発表記録, 01 Sep. 2018

  
• 遠赤色光高照射による苔類ゼニゴケの生殖器誘導機構

  井上佳祐; 西浜竜一; 荒木崇; 河内孝之

  日本植物学会大会研究発表記録, 01 Sep. 2018

  
• Gibberellin-independent functional conservation of DELLA protein in the basal land plant Marchantia polymorpha

  SUN Rui; INOUE Keisuke; KUSUNOKI Ryunosuke; NISHIHAMA Ryuichi; YAMAOKA Shohei; KOHCHI Takayuki

  日本植物生理学会年会(Web), 2018

  
• 転写因子BONOBOは陸上植物の生殖系列細胞の分化に必要である

  山岡尚平; 西浜竜一; 吉竹良洋; 石田咲子; 井上佳祐; 齊藤美咲; 岡橋啓太郎; BAO Haonan; 西田浩之; 山口勝司; 重信秀治; 石崎公庸; 大和勝幸; 河内孝之

  日本植物生理学会年会(Web), 2018

  
• The transcription factor BONOBO controls sexual organ development in the basal land plant Marchantia polymorpha

  Shohei Yamaoka; Keisuke Inoue; Ryuichi Nishihama; Katsushi Yamaguchi; Shuji Shigenobu; Kimitsune Ishizaki; Katsuyuki T. Yamato; Takayuki Kohchi

  50th Annual Meeting of the Japanese Society of Developmental Biologists, May 2017

  
• Exploring the biological functions of gibberellin-related diterpenes in the basal land plant Marchantia polymorpha

  Rui Sun; Keisuke Inoue; Ryunosuke Kusunoki; Ryuichi Nishihama; Shohei Yamaoka; Takayuki Kohchi

  第58回日本植物生理学会年会, Mar. 2017

  
• The transcription factor BONOBO plays a central role in transition from vegetative to reproductive growth in the liverwort Marchantia polymorpha

  Shohei Yamaoka; Keisuke Inoue; Ryuichi Nishihama; Katsushi Yamaguchi; Shuji Shigenobu; Kimitsune Ishizaki; Katsuyuki T. Yamato; Takayuki Kohchi

  EMBO Workshop New model systems for early land plant evolution, Jun. 2016

  
• 苔類ゼニゴケの成長相制御因子BONOBOの日長・光質による発現制御

  山岡尚平; 井上佳祐; 友金寛和; 西浜竜一; 山口勝司; 重信秀治; 石崎公庸; 大和勝幸; 河内孝之

  第57回日本植物生理学会年会, Mar. 2016

  
• Functional Analysis of the GA-GID1-DELLA Signaling Module in the Liverwort Marchantia polymorpha

  SUN Rui; INOUE Keisuke; KUSUNOKI Ryunosuke; NISHIHAMA Ryuichi; YAMAOKA Shohei; KOHCHI Takayuki

  日本植物生理学会年会要旨集, 2016

  
• 地表で暮らす葉状性苔類がとる光生存戦略

  西浜竜一; 井上佳祐; 石崎公庸; 河内孝之

  日本植物学会大会研究発表記録, 01 Sep. 2015

  
• 苔類ゼニゴケを用いた転写因子PIFによる赤色光シグナル伝達機構の解析

  井上佳祐; 西浜竜一; 石崎公庸; 河内孝之

  第56回日本植物生理学会年会, Mar. 2015

  
• 基部陸上植物ゼニゴケにおける祖先的な赤色光シグナル伝達機構

  井上佳祐; 石崎公庸; 西浜竜一; 河内孝之

  日本光生物学協会, Aug. 2014

  
• 苔類ゼニゴケにおける転写因子レパートリー

  白川一; 井上佳祐; 石崎公庸; 西浜竜一; 河内孝之

  日本植物生理学会年会要旨集, 11 Mar. 2014

  
• 苔類ゼニゴケにおける転写因子HY5を介した光形態形成制御機構

  竹谷千尋; 井上佳祐; 石崎公庸; 西浜竜一; 河内孝之

  日本植物生理学会年会要旨集, 11 Mar. 2014

  
• 苔類ゼニゴケを用いた祖先的な赤色光シグナル伝達機構の解析

  井上佳祐; 西浜竜一; 石崎公庸; 河内孝之

  日本農芸化学会大会講演要旨集(Web), 05 Mar. 2014

  
• 赤色光受容体フィトクロムと光合成によるゼニゴケ細胞周期の光制御

  真鍋諒; 中村衣里; 井上佳祐; 保坂将志; 石崎公庸; 河内孝之; 西浜竜一

  日本植物学会大会研究発表記録, 20 Aug. 2013

  
• 基部陸上植物ゼニゴケにおける転写因子PIFを介した赤色光シグナル伝達機構

  井上佳祐; 西浜竜一; 石崎公庸; 河内孝之

  日本植物学会大会研究発表記録, 20 Aug. 2013

  
• 苔類ゼニゴケにおける転写因子PIFを介した赤色光シグナル伝達機構

  井上佳祐; 石崎公庸; 西浜竜一; 河内孝之

  日本植物生理学会年会要旨集, 14 Mar. 2013

  
• ゼニゴケの赤色光によるサイクリンD遺伝子発現制御機構

  西浜竜一; 真鍋諒; 中村衣里; 井上佳祐; 石崎公庸; 河内孝之

  日本植物生理学会年会要旨集, 14 Mar. 2013

  
• 苔類ゼニゴケにおけるHY5を介した光形態形成シグナル伝達経路の解析

  竹谷千尋; 井上佳祐; 石崎公庸; 西浜竜一; 河内孝之

  日本植物生理学会年会要旨集, 14 Mar. 2013

  
• ゼニゴケのフィトクロムによる細胞周期制御機構

  西浜竜一; 中村衣里; 保坂将志; 井上佳祐; 真鍋諒; 石崎公庸; 河内孝之

  日本植物学会大会研究発表記録, 14 Sep. 2012

  
• 苔類ゼニゴケにおける赤色光による細胞周期制御機構

  中村衣里; 保坂将志; 井上佳祐; 石崎公庸; 西浜竜一; 河内孝之

  日本植物生理学会年会要旨集, 09 Mar. 2012

  
• 赤色光は苔類ゼニゴケの細胞分裂を制御する

  井上佳祐; 中村衣里; 保坂将志; 石崎公庸; 西浜竜一; 河内孝之

  日本農芸化学会大会講演要旨集(Web), 05 Mar. 2012

  

Presentations

• Far-red high-irradiance response signaling regulates reproductive induction in Marchantia polymorpha

  Keisuke Inoue; Ryuichi Nishihama; Takashi Araki; Takayuki Kohchi

  第60回 日本植物生理学会年会, 14 Mar. 2019, 日本植物生理学会

  
• 遠赤色光高照射による苔類ゼニゴケの生殖器誘導機構

  井上佳祐; 西浜竜一; 荒木崇; 河内孝之

  日本植物学会 第82回大会, 14 Sep. 2018, 日本植物学会

  
• Role of the plant circadian clock in cellular differentiation

  Keisuke Inoue; Keita Bekki; Kotaro Torii; Hanako Shimizu; Takashi Araki; Motomu Endo

  第59回 日本植物生理学会年会, 28 Mar. 2018, 日本植物生理学会

  

Books and Other Publications

• 基部陸上植物の光応答戦略 -フィトクロムを介した光形態形成の分子機構-

  石崎公庸; 井上佳祐; 河内孝之, Joint work

  BSJ-Review 4:37-44 (2013), 2013, Not refereed

  

Education

Teaching subject(s)

• From 01 Apr. 2024, To 31 Mar. 2025

  Advanced Course of Genome Life Science

  M216, Spring, Institute for Liberal Arts and Sciences, 1
• From 01 Apr. 2024, To 31 Mar. 2025

  Advanced course of genome life sciences

  1038, Year-long, Graduate School of Biostudies, 1
• From 01 Apr. 2024, To 31 Mar. 2025

  Seminar in Plant Resource Science

  5303, Year-long, Faculty of Agriculture, 2
• From 01 Apr. 2024, To 31 Mar. 2025

  Plant Physiology II

  5137, Spring, Faculty of Agriculture, 2
• From 01 Apr. 2023, To 31 Mar. 2024

  Advanced course of genome life sciences

  1038, Year-long, Graduate School of Biostudies, 1
• From 01 Apr. 2023, To 31 Mar. 2024

  Advanced Course of Genome Life Science

  M216, Spring, Institute for Liberal Arts and Sciences, 1
• From 01 Apr. 2023, To 31 Mar. 2024

  Seminar in Plant Resource Science

  5303, Year-long, Faculty of Agriculture, 2
• From 01 Apr. 2023, To 31 Mar. 2024

  Plant Physiology II

  5137, Spring, Faculty of Agriculture, 2
• From 01 Apr. 2022, To 31 Mar. 2023

  Plant Physiology II

  5137, Spring, Faculty of Agriculture, 2
• From 01 Apr. 2022, To 31 Mar. 2023

  Seminar in Plant Resource Science

  5303, Year-long, Faculty of Agriculture, 2
• From 01 Apr. 2022, To 31 Mar. 2023

  Advanced course of genome life sciences

  1038, Year-long, Graduate School of Biostudies, 1
• From 01 Apr. 2022, To 31 Mar. 2023

  Introduction to Foreign Literature in Bioresource Science II

  5189, Fall, Faculty of Agriculture, 2
• From 01 Apr. 2022, To 31 Mar. 2023

  Advanced Course of Genome Life Science

  M216, Spring, Institute for Liberal Arts and Sciences, 1
• From Apr. 2020, To Mar. 2021

  Seminar in Plant Resource Science

  Year-long, 農学部
• From Apr. 2020, To Mar. 2021

  Introduction to Foreign Literature in Bioresource Science I

  Spring, 農学部
• From Apr. 2021, To Mar. 2022

  Seminar in Plant Resource Science

  Year-long, 農学部

Administration

Faculty management (title, position)

• From 01 Apr. 2021

  よろず相談窓口委員会 （ハラスメント相談窓口委員会）