Nagata, Takashi(Institute of Advanced Energy (IAE)) | Activity Database on Education and Research, Kyoto University

Nagata, Takashi

Institute of Advanced Energy (IAE) Associate Professor

Last Updated :2024/11/26

Basic Information

Affiliated programs (koza)

Graduate School of Energy Science, エネルギー基礎科学専攻エネルギー物質科学講座, 准教授

Professional Memberships

THE SPECTROSCOPICAL SOCIETY OF JAPAN

THE BIOPHYSICAL SOCIETY OF JAPAN

THE NUCLEAR MAGNETIC RESONANCE SOCIETY OF JAPAN

THE RNA SOCIETY OF JAPAN

PROTEIN SCIENCE SOCIETY OF JAPAN

THE MOLECULAR BIOLOGY SOCIETY OF JAPAN

The Biophysical Society

Academic Degree

修士（工学）(横浜国立大学)

博士（工学）(横浜国立大学)

Academic Resume (Graduate Schools)

横浜国立大学, 大学院工学研究科物質工学専攻博士課程後期, 修了

横浜国立大学, 大学院工学研究科物質工学専攻博士課程前期, 修了

Academic Resume (Undergraduate School/Majors)

横浜国立大学, 工学部物質工学科, 卒業

Research History

From Jun. 2013, To Present
Kyoto University, Institute of Advanced Energy, Associate professor

From Sep. 2011, To May 2013
Kyoto University, Institute of Advanced Energy, Assistant professor

From Apr. 2009, To Aug. 2011
Yokohama City University, 生命ナノシステム科学研究科, Assistant professor

From Apr. 2008, To Mar. 2009
Yokohama City University, International College of Arts and Sciences, Assistant professor

From Apr. 2006, To Mar. 2008
Yokohama City University, International College of Arts and Sciences, Assistant professor

From Apr. 2004, To Mar. 2006
RIKEN, Genomic Science Research Center, Researcher

From Aug. 2002, To Mar. 2004
RIKEN, Genomic Science Research Center, Research Associate

From Aug. 1998, To Jul. 2002
The Rockefeller University, USA, Laboratory of Biophysics, Research Associate

From Apr. 1992, To Mar. 1994
三菱化学生命科学研究所, 生物工学研究部門, 特別研究生

Profile

Profile
I am tackling the challenges involved in the production of next-generation energy, functional biopolymer, and chemical product materials from woody biomass, as well as in elucidation of the molecular mechanisms of cancer and viral diseases so as to construct the molecular fundamentals to develop new drugs. My research combines the methods used in the fields of NMR spectroscopy, genetic engineering, protein, and nucleic acid sciences, cell biology, and physical chemistry. My researches are dedicated to contributing to the achievement of SDG. Since NMR structural determination is like one of my hobbies, I enjoy it so much.

Language of Instruction

English

ID,URL

J-Global ID
201201058893463242

researchmap URL

https://researchmap.jp/nagatat81

Last Updated :2024/11/26

Research

Research Topics, Overview of the research

Research Topics
Using Structural Biology approaches to investigate the issues faced in energy and life/medical sciences
Overview of the research
I am tackling the challenges involved in the production of next-generation energy, functional biopolymer, and chemical product materials from woody biomass, as well as in elucidation of the molecular mechanisms of cancer and viral diseases so as to construct the molecular fundamentals to develop new drugs. My research combines the methods used in the fields of NMR spectroscopy, genetic engineering, protein, and nucleic acid sciences, cell biology, and physical chemistry. My researches are dedicated to contribute to the achievement of SDG. My researches are dedicated to contributing to the achievement of SDG.

Research Interests

molecular docking

pharmacophore

yeast surface display

X-ray difraction

triplex

feruloyl esterase

base-pair opening

Dynamics of nucleic acids

in-cell NMR

lytic polysaccharide monooxygenase

LPMO

liquid-liquid phase separation

LLPS

DNA origami

蛋白質構造

核酸構造

立体構造

蛋白質-核酸相互作用

発現制御

翻訳制御

転写後調節

transcription factor

天然変性

四重鎖

グアニン四重鎖

Gカルテット

フォールディング

スライディング

アミロイド

Musashi

APOBEC

プリオン

進化分子工学

nanobody

SELEX

アプタマー

核酸医薬

バイオマス

woody biomass

plant biomass

lignin carbohydrate complex

リグノセルロース

リグニン

ヘミセルロース

fungi

glucuronoyl esterase

マンガンペルオキシダーゼ

cellulase

腐朽菌

RNAアプタマー

RNA工学

酵素

蛋白質工学

安定同位体

ノンコーディングRNA

非コードRNA

RNA結合蛋白質

蛋白質-蛋白質相互作用

核酸-蛋白質相互作用

Research Areas

Life sciences, Functional biochemistry

Life sciences, Pharmaceuticals - analytical and physicochemistry

Nanotechnology/Materials, Biochemistry

Nanotechnology/Materials, Molecular biochemistry

Nanotechnology/Materials, Analytical chemistry

Life sciences, Biophysics

Life sciences, Molecular biology

Life sciences, Structural biochemistry

Papers

Recent progress of in-cell NMR of nucleic acids in living human cells.
Yudai Yamaoki; Takashi Nagata; Tomoki Sakamoto; Masato Katahira
Biophysical reviews, Apr. 2020

Observation of nucleic acids inside living human cells by in-cell NMR spectroscopy.
Yudai Yamaoki; Takashi Nagata; Tomoki Sakamoto; Masato Katahira
Biophysics and physicobiology, 2020

Selection and characterization of aptamers targeting the Vif-CBFβ-ELOB-ELOC-CUL5 complex
Kazuyuki Kumagai; Keisuke Kamba; Takuya Suzuki; Yuto Sekikawa; Chisato Yuki; Michiaki Hamada; Kayoko Nagata; Akifumi Takaori-Kondo; Li Wan; Masato Katahira; Takashi Nagata; Taiichi Sakamoto
The Journal of Biochemistry, 13 May 2024, Peer-reviewed, Corresponding author

¹H, ¹³C, and ¹⁵N resonance assignments and solution structure of the N-terminal divergent caplonin homology (NN-CH) domain of human intraflagellar transport protein 54
Kanako Kuwasako; Weirong Dang; Fahu He; Mari Takahashi; Kengo Tsuda; Takashi Nagata; Akiko Tanaka; Naohiro Kobayashi; Takanori Kigawa; Peter Gunter; Mikamo Shirouzu; Shigeyuki Yokoyama; Yutaka Muto
Biomolecular NMR Assignments, 29 Mar. 2024, Peer-reviewed

Structure-based characterization and improvement of an enzymatic activity of Acremonium alcalophilum feruloyl esterase
Apisan Phienluphon; Keiko Kondo; Bunzo Mikami; Kenneth Sze Kai Teo; Kaori Saito; Takashi Watanabe; Takashi Nagata; Masato Katahira
ACS Sustainable Chemistry & Engineering, Feb. 2024, Peer-reviewed, Corresponding author

Structural insights into the interaction between the C-terminal-deleted BH3-like motif peptide of hepatitis B virus X protein and Bcl-xL
Hideki Kusunoki; Taiichi Sakamoto; Naohiro Kobayashi; Toshiyuki Kohno; Kaori Wakamatsu; Takashi Nagata
Biochemistry, 05 Mar. 2024, Peer-reviewed, Corresponding author

Fluoride Ion in Alcohols: Isopropanol vs. Hexafluoroisopropanol
Nozomi Yoneda; Haruka Iyama; Takashi Nagata; Masato Katahira; Yoshiki Ishii; Kohei Tada; Kazuhiko Matsumoto; Rika Hagiwara
The Journal of Physical Chemistry Letters, 05 Feb. 2024, Peer-reviewed

Enhancing Bioethanol Production from Rice Straw through Environmentally Friendly Delignification Using Versatile Peroxidase
Kenneth Sze Kai Teo; Keiko Kondo; Sadat Mohamed Rezk Khattab; Takashi Watanabe; Takashi Nagata; Masato Katahira
Journal of Agricultural and Food Chemistry, 30 Jan. 2024, Peer-reviewed, Corresponding author

Boosting Sugarcane Trash Decomposition: Synergistic action and proximity effect of Xylanase and Feruloyl Esterase co-displayed on the cell surface of Pichia pastoris (Komagataella phaffi)
Apisan Phienluphon; Keiko Kondo; Takashi Nagata; Masato Katahira
Sustainable Energy & Fuels, 17 Jan. 2024, Peer-reviewed, Corresponding author

Understanding manganese peroxidase-catalyzed conversion of the lignin structure and its application for the polymerization of Kraft lignin
TEO, KENNETH SZE KAI; Kondo, Keiko; Watanabe, Takashi; Nagata, Takashi; Katahira, Masato
ACS Sustainable Chemistry & Engineering, Jan. 2024, Peer-reviewed, Corresponding author

Uniform¹³C/¹⁵N-labeling of DNA by tandem repeat amplification
Werner, M.H.; Gupta, V.; Lambert, L.J.; Nagata, T.
Methods in Enzymology, 2001

Direct inhibition of human APOBEC3 deaminases by HIV-1 Vif independent of the proteolysis pathway
Keisuke Kamba; Li Wan; Satoru Unzai; Ryo Morishita; Akifumi Takaori-Kondo; Takashi Nagata; Masato Katahira
Biophysical Journal, Feb. 2024, Peer-reviewed, Corresponding author

NMR characterization of the structure of the intrinsically disordered region of human origin recognition complex subunit 1, hORC1, and of its interaction with G-quadruplex DNAs
Afaf Eladl; Yudai Yamaoki; Keisuke Kamba; Shoko Hoshina; Haruka Horinouchi; Keiko Kondo; Shou Waga; Takashi Nagata; Masato Katahira
Biochemical and Biophysical Research Communications, Oct. 2023, Peer-reviewed

Structural insights into the molecular mechanisms of substrate recognition and hydrolysis by feruloyl esterase from Aspergillus sydowii
Apisan Phienluphon; Keiko Kondo; Bunzo Mikami; Takashi Nagata; Masato Katahira
International Journal of Biological Macromolecules, 30 Sep. 2023, Peer-reviewed, Corresponding author

Direct evidence of α ester linkages between lignin and glucuronoxylan that reveal the robust heteropolymeric complex in plant cell walls
Hiroshi Nishimura; Kazuma Nagata; Takashi Nagata; Masato Katahira; Takashi Watanabe
08 Feb. 2022

Enhanced depolymerization of beech wood lignin and its removal with peroxidases through continuous separation of lignin fragments
Kenneth Sze Kai Teo; Keiko Kondo; Kaori Saito; Yu Iseki; Takashi Watanabe; Takashi Nagata; Masato Katahira
Green Chemistry, Sep. 2023, Peer-reviewed, Corresponding author

Complex Formation of an RNA Aptamer with a Part of HIV-1 Tat through Induction of Base Triples in Living Human Cells Proven by In-Cell NMR
Omar Eladl; Yudai Yamaoki; Keiko Kondo; Takashi Nagata; Masato Katahira
International Journal of Molecular Sciences, 22 May 2023, Peer-reviewed

Detection of interaction between an RNA aptamer and its target compound in living human cells using 2D in-cell NMR
Eladl, O; Yamaoki, Y; Kondo, K; Nagata, T; Katahira, M
Chemical Communications, 29 Nov. 2022, Peer-reviewed, Corresponding author

Shedding light on the base-pair opening dynamics of nucleic acids in living human cells
Yamaoki, Y; Nagata, T; Kondo, K; Sakamoto, T; Takami, S; Katahira, M
Nature Communications, 29 Nov. 2022, Peer-reviewed, Corresponding author
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Chemical shift assignments of a fusion protein comprising the C-terminal-deleted hepatitis B virus X protein BH3-like motif peptide and Bcl-xL
Hideki Kusunoki; Isao Hamaguchi; Naohiro Kobayashi; Takashi Nagata
Biomolecular NMR Assignments, 31 Aug. 2022, Peer-reviewed, Corresponding author

Degradation of Lignin by Infrared Free Electron Laser
Takayasu Kawasaki; Heishun Zen; Takeshi Sakai; Yoske Sumitomo; Kyoko Nogami; Ken Hayakawa; Toyonari Yaji; Toshiaki Ohta; Takashi Nagata; Yasushi Hayakawa
Polymers, 14 Jun. 2022, Peer-reviewed

1H, 13C, and 15N resonance assignments and solution structures of the KH domain of human ribosome binding factor A, mtRbfA, involved in mitochondrial ribosome biogenesis
Kanako Kuwasako; Sakura Suzuki; Nobukazu Nameki; Masayuki Takizawa; Mari Takahashi; Kengo Tsuda; Takashi Nagata; Satoru Watanabe; Akiko Tanaka; Naohiro Kobayashi; Takanori Kigawa; Peter Güntert; Mikako Shirouzu; Shigeyuki Yokoyama; Yutaka Muto
Biomolecular NMR Assignments, 06 Jun. 2022, Peer-reviewed

Functional and Structural Characterizations of Lytic Polysaccharide Monooxygenase, Which Cooperates Synergistically with Cellulases, from Ceriporiopsis subvermispora
Huyen Nguyen; Keiko Kondo; Yusei Yagi; Yu Iseki; Nagi Okuoka; Takashi Watanabe; Bunzo Mikami; Takashi Nagata; Masato Katahira
ACS Sustainable Chemistry & Engineering, 04 Jan. 2022, Peer-reviewed, Corresponding author

1H, 13C and 15N resonance assignments and solution structures of the two RRM domains of Matrin-3
Fahu He; Kanako Kuwasako; Masayuki Takizawa; Mari Takahashi; Kengo Tsuda; Takashi Nagata; Satoru Watanabe; Akiko Tanaka; Naohiro Kobayashi; Takanori Kigawa; Peter Güntert; Mikako Shirouzu; Shigeyuki Yokoyama; Yutaka Muto
Biomolecular NMR Assignments, 16 Nov. 2021, Peer-reviewed

Glyme-Lithium Bis(trifluoromethylsulfonyl)amide Super-concentrated Electrolytes: Salt Addition to Solvate Ionic Liquids Lowers Ionicity but Liberates Lithium Ions
Kitada A; Koujin Y; Shimizu M; Kawata K; Yoshinaka C; Saimura M; Nagata T; Katahira M; Fukami K; Murase K
Journal of The Electrochemical Society, 03 Sep. 2021, Peer-reviewed
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Detection of parallel and antiparallel DNA triplex structures in living human cells using in-cell NMR
Sakamoto T; Yamaoki Y; Nagata T; Katahira M
Chemical Communications, 17 Jun. 2021, Peer-reviewed

Non-coding RNA suppresses FUS aggregation caused by mechanistic shear stress on pipetting in a sequence-dependent manner
Nesreen Hamad; Ryoma Yoneda; Masatomo So; Riki Kurokawa; Takashi Nagata; Masato Katahira
Scientific Reports, 04 May 2021, Peer-reviewed
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Investigation of the Interaction of Human Origin Recognition Complex Subunit 1 with G-Quadruplex DNAs of Human c-myc Promoter and Telomere Regions
Afaf Eladl; Yudai Yamaoki; Shoko Hoshina; Haruka Horinouchi; Keiko Kondo; Shou Waga; Takashi Nagata; Masato Katahira
International Journal of Molecular Sciences, 27 Mar. 2021, Peer-reviewed

An Ammonium Solvate Ionic Liquid
Kio Kawata; Atsushi Kitada; Kazuhiro Fukami; Masayuki Saimura; Takashi Nagata; Masato Katahira; Kuniaki Murase
Journal of The Electrochemical Society, 17 Feb. 2021, Peer-reviewed

Ligand Exchange Conduction of Lithium Ion in a Pentaglyme-Lithium Bis(trifluoromethylsulfonyl)amide Super-Concentrated Electrolyte
Atsushi Kitada; Kio Kawata; Masahiro Shimizu; Masayuki Saimura; Takashi Nagata; Masato Katahira; Kazuhiro Fukami; Kuniaki Murase
Journal of the Electrochemical Society, 14 Jan. 2021, Peer-reviewed

Nucleus accumbens-associated protein 1 binds DNA directly through the BEN domain in a sequence-specific manner
Nakayama N; Sakashita G; Nagata T; Kobayashi N; Yoshida H; Park SY; Nariai Y; Kato H; Obayashi E; Nakayama K; Kyo S; Urano T
Biomedicine, doi:10.3390/biomedicines8120608, 14 Dec. 2020, Peer-reviewed

Proton conduction in hydronium solvate ionic liquids affected by ligand shape
Kio Kawata; Atsushi Kitada; Naoki Tsuchida; Masayuki Saimura; Takashi Nagata; Masato Katahira; Kazuhiro Fukami; Kuniaki Murase
Physical Chemistry Chemical Physics, 02 Dec. 2020, Peer-reviewed

Development and structural determination of an anti-PrPC aptamer that blocks pathological conformational conversion of prion protein
Tsukasa Mashima; Joon-Hwa Lee; Yuji O. Kamatari; Tomohiko Hayashi; Takashi Nagata; Fumiko Nishikawa; Satoshi Nishikawa; Masahiro Kinoshita; Kazuo Kuwata; Masato Katahira
Scientific Reports, Dec. 2020, Peer-reviewed
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NMR Elucidation of Nonproductive Binding Sites of Lignin Models with Carbohydrate-Binding Module of Cellobiohydrolase I
Tokunaga Y; Nagata T; Kondo K; Katahira M; Watanabe T
Biotechnology for Biofuels, 07 Oct. 2020, Peer-reviewed

Structural evaluation and protium-deuterium exchange in 1-ethyl-3-methylimidazolium halide-ethylene glycol mixtures
Chen Z; Tonouchi Y; Matsumoto K; Tsuzuki S; Nagata T; Katahira M; Hagiwara R
Journal of Fluorine Chemistry, Oct. 2020, Peer-reviewed
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1H, 13C and 15N resonance assignment of the YTH domain of YTHDC2
Fahu He; Ryuta Endo; Kanako Kuwasako; Mari Takahashi; Kengo Tsuda; Takashi Nagata; Satoru Watanabe; Akiko Tanaka; Naohiro Kobayashi; Takanori Kigawa; Peter Güntert; Mikako Shirouzu; Shigeyuki Yokoyama; Yutaka Muto
Biomolecular NMR Assignments, in press, 15 Sep. 2020, Peer-reviewed

Complete NMR assignment and analysis of molecular structural changes of β–O–4 lignin oligomer model compounds in organic media with different water content
Yuki Tokunaga; Takashi Nagata; Keiko Kondo; Masato Katahira; Takashi Watanabe
Holzforschung, 28 Aug. 2020, Peer-reviewed

Direct visualization of the conformational change of FUS/TLS upon binding to promoter-associated non-coding RNA
Hamad N; Watanabe H; Uchihashi T; Kurokawa R; Nagata T; Katahira M
Chemical Communications, Jul. 2020, Peer-reviewed

Fluoride Ion Interactions in Alkali-Metal Fluoride–Diol Complexes
Yuto Tonouchi; Kazuhiko Matsumoto; Takashi Nagata; Masato Katahira; Rika Hagiwara
Inorganic Chemistry, 04 May 2020, Peer-reviewed
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Suppression of Fast Proton Conduction by Dilution of a Hydronium Solvate Ionic Liquid: Localization of Ligand Exchange
Kawase K; Kitada A; Tsuchida N; Saimura N; Nagata T; Katahira M; Fukami K; Murase K
Journal of The Electrochemical Society, 26 Feb. 2020, Peer-reviewed
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RNA sequence and length contribute to RNA-induced conformational change of TLS/FUS
Hamad N; Mashima T; Yamaoki Y; Kondo K; Yoneda R; Oyoshi T; Kurokawa R; Nagata T; Katahira M
Scientific Reports, doi: 10.1038/s41598-020-59496-0, 14 Feb. 2020, Peer-reviewed

How Does the Recently Discovered Peptide MIP Exhibit Much Higher Binding Affinity than an Anticancer Protein p53 for an Oncoprotein MDM2?
Tatsuya Yamada; Tomohiko Hayashi; Simon Hikiri; Naohiro Kobayashi; Hiroshi Yanagawa; Mitsunori Ikeguchi; Masato Katahira; Takashi Nagata; Masahiro Kinoshita
Journal of Chemical Information and Modeling, 26 Aug. 2019, Peer-reviewed

An insight into the dependence of the deaminase rate of human APOBEC3F on the length of single-stranded DNA, which is affected by the concentrations of APOBEC3F and single-stranded DNA
L. Wan; K. Kamba; T. Nagata; M. Katahira
Biochimica et Biophysica Acta, Apr. 2019, Peer-reviewed, Invited, Corresponding author

Identification of key residues for activities of atypical glutathione S-transferase of Ceriporiopsis subvermispora, a selective degrader of lignin in woody biomass, by crystallography and functional mutagenesis
O.W.H. Wan; B. Mikami; N. Saka; K. Kondo; M.I. Lin; T. Nagata; M. Katahira
International Journal of Biological Macromolecules, Mar. 2019, Peer-reviewed, Corresponding author

The anti-prion RNA aptamer R12 disrupts the Alzheimer’s disease-related complex between prion and amyloid β
M. Iida; T. Mashima; Y. Yamaoki; M. So; T. Nagata; M. Katahira
FEBS J, doi: 10.1111/febs.14819, Mar. 2019, Peer-reviewed

Structure of a serine-type glutathione S-transferase of Ceriporiopsis subvermispora and identification of the enzymatically important non-canonical residues by functional mutagenesis
O.W.H. Wan; B. Mikami; N. Saka; K. Kondo; T. Nagata; M. Katahira
Biochem. Biophys. Res. Commun., doi: 10.1016/j.bbrc.2019.01.076., Feb. 2019, Peer-reviewed, Corresponding author

NMR Analysis on Molecular Interaction of Lignin with Amino Acid Residues of Carbohydrate-Binding Module from Trichoderma reesei Cel7A
Tokunaga, Y; Nagata, T; Suetomi, T; Oshiro, S; Kondo, K; Katahira, M; Watanabe, T
Scientific Reports, doi: 10.1038/s41598-018-38410-9., Feb. 2019, Peer-reviewed
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Versatility of RNA-Binding Proteins in Living Cells
Riki Kurokawa; Akihide Takeuchi; Nobuyuki Shiina; Masato Katahira; Takefumi Yamashita; Yoko Matsuno; Keisuke Hitachi; Shinsuke Ishigaki; Nesreen Haamad; Ryoma Yoneda; Naomi Ueda; Kei Iida; Motoyasu Hosokawa; Masatoshi Hagiwara; Mamiko Iida; Tsukasa Mashima; Yudai Yamaoki; Masatomo So; Takashi Nagata; Gen Sobue; Keiko Kondo; Hiroki Watanabe; Takayuki Uchihashi
Biomedical Sciences, 2019, Peer-reviewed

Noise peak filtering in multi-dimensional NMR spectra using convolutional neural networks.
Naohiro Kobayashi; Yoshikazu Hattori; Takashi Nagata; Shoko Shinya; Peter Güntert; Chojiro Kojima; Toshimichi Fujiwara
Bioinformatics (Oxford, England), 15 Dec. 2018, Peer-reviewed

Classification of fungal glucuronoyl esterases (FGEs), and characterization of two new FGEs from Ceriporiopsis subvermispora and Pleurotus eryngii
M.I. Lin; A. Hiyama; K. Kondo; T. Nagata; M. Katahira
Applied Microbiology and Biotechnology, Nov. 2018, Peer-reviewed, Corresponding author

Paritally Naked Fluoride in Solvate Ionic Liquids
Z. Chen; Y. Tonouchi; K. Matsumoto; M. Saimura; R. Atkin; T. Nagata; M. Katahira; R. Hagiwara
The Journal of Physical Chemistry Letters, doi: 10.1021/acs.jpclett.8b03117., Nov. 2018, Peer-reviewed

Characterization of the glutathione S-transferases that belong to the GSTFuA class in Ceriporiopsis subvermispora: Implications in intracellular detoxification and metabolism of wood-derived compounds
Wan Hasnidah Wan Osman; Meng-I Lin; Keiko Kondo; Takashi Nagata; Masato Katahira
International Journal of Biological Macromolecules, 01 Jul. 2018, Peer-reviewed, Corresponding author

High yield production of fungal manganese peroxidases by E. coli through soluble expression, and examination of the activities
Meng-I Lin; Takashi Nagata; Masato Katahira
Protein Expression and Purification, 01 May 2018, Peer-reviewed, Corresponding author

Utilizing NMR to study RNA- and compound-binding mechanisms of Musashi-1, a stem/progenitor cell marker in various normal and cancer cells
T. Nagata
Integrated Cancer Science and Therapeutics, Apr. 2018, Peer-reviewed, Invited, Corresponding author

Direct evidence for α ether linkage between lignin and carbohydrates in wood cell walls
H. Nishimura; A. Kamiya; T. Nagata; M. Katahira; T. Watanabe
Scientific Reports, doi: 10.1038/s41598-018-24328-9., Apr. 2018, Peer-reviewed
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The first successful observation of in-cell NMR signals of DNA and RNA in living human cells
Yudai Yamaoki; Ayaka Kiyoishi; Masayuki Miyake; Fumi Kano; Masayuki Murata; Takashi Nagata; Masato Katahira
Physical Chemistry Chemical Physics, 07 Feb. 2018, Peer-reviewed

The C-terminal cytidine deaminase domain of APOBEC3G itself undergoes intersegmental transfer for a target search, as revealed by real-time NMR monitoring
Keisuke Kamba; Takashi Nagata; Masato Katahira
Physical Chemistry Chemical Physics, 07 Feb. 2018, Peer-reviewed, Corresponding author

Influence of the DNA sequence/length and pH on deaminase activity, as well as the roles of the amino acid residues around the catalytic center of APOBEC3F
Li Wan; Takashi Nagata; Masato Katahira
Physical Chemistry Chemical Physics, 07 Feb. 2018, Peer-reviewed

Plastic roles of phenylalanine and tyrosine residues of TLS/FUS in complex formation with the G-quadruplexes of telomeric DNA and TERRA
Keiko Kondo; Tsukasa Mashima; Takanori Oyoshi; Ryota Yagi; Riki Kurokawa; Naohiro Kobayashi; Takashi Nagata; Masato Katahira
SCIENTIFIC REPORTS, Feb. 2018, Peer-reviewed
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Multiplicity in Long Noncoding RNA in Living Cells
Riki Kurokawa; Reina Komiya; Takanori Oyoshi; Yoko Matsuno; Hidenori Tani; Masato Katahira; Keisuke Hitachi; Yuji Iwashita; Takefumi Yamashita; Keiko Kondo; Ryoma Yoneda; Yudai Yamaoki; Naomi Ueda; Tsukasa Mashima; Naohiro Kobayashi; Takashi Nagata; Ayaka Kiyoishi; Masayuki Miyake; Fumi Kano; Masayuki Murata; Nesreen Hamad; Kohei Sasaki; Naoyuki Shoji
Biomedical Sciences, 2018, Peer-reviewed

Characterisation of an aptamer against Runt domain of AML1 (RUNX1) by NMR and mutational analyses
K. Takada; R. Amano; Y. Nomura; Y. Tanaka; S. Sugiyama; T. Nagata; M. Katahira; Y. Nakamura; T. Kozu; T. Sakamoto
FEBS Open Bio, Jan. 2018, Peer-reviewed
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A hydronium solvate ionic liquid: Ligand exchange conduction driven by labile solvation
Atsushi Kitada; Kohei Kintsu; Shun Takeoka; K. Fukami; Masayuki Saimura; Takashi Nagata; Masato Katahira; Kuniaki Murase
Journal of the Electrochemical Society, 2018, Peer-reviewed
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Mechanism of protein-RNA recognition: Analysis based on the statistical mechanics of hydration
Tomohiko Hayashi; Tomoaki Matsuda; Takashi Nagata; Masato Katahira; Masahiro Kinoshita
Physical Chemistry Chemical Physics, 2018, Peer-reviewed

A hydronium solvate ionic liquid: Facile synthesis of air-stable ionic liquid with strong brønsted acidity
Atsushi Kitada; Shun Takeoka; Kohei Kintsu; Kazuhiro Fukami; Masayuki Saimura; Takashi Nagata; Masato Katahira; Kuniaki Murase
Journal of the Electrochemical Society, 2018, Peer-reviewed
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Conjugation of two RNA aptamers improves binding affinity to AML1 Runt domain
Yusuke Nomura; Kaori Yamazaki; Ryo Amano; Kenta Takada; Takashi Nagata; Naohiro Kobayashi; Yoichiro Tanaka; Junichi Fukunaga; Masato Katahira; Tomoko Kozu; Yoshikazu Nakamura; Yuji Haishima; Hidetaka Torigoe; Taiichi Sakamoto
JOURNAL OF BIOCHEMISTRY, Dec. 2017, Peer-reviewed

Observation by real-time NMR, and interpretation of length- and location-dependent deamination activity of APOBEC3B
L. Wan; T. Nagata; R. Morishita; A. Takaori-Kondo; M. Katahira
ACS Chemical Biology, DOI: 10.1021/acschembio.7b00662, 17 Nov. 2017, Peer-reviewed

Backbone and side chain assignments of the second RNA-binding domain of Musashi-1 in its free form and in complex with 5-mer RNA
Ryo Iwaoka; Takashi Nagata; Kengo Tsuda; Takao Imai; Hideyuki Okano; Naohiro Kobayashi; Masato Katahira
BIOMOLECULAR NMR ASSIGNMENTS, Oct. 2017, Peer-reviewed, Corresponding author

Structural Insight into the Recognition of r(UAG) by Musashi-1 RBD2, and Construction of a Model of Musashi-1 RBD1-2 Bound to the Minimum Target RNA
Ryo Iwaoka; Takashi Nagata; Kengo Tsuda; Takao Imai; Hideyuki Okano; Naohiro Kobayashi; Masato Katahira
MOLECULES, Jul. 2017, Peer-reviewed, Corresponding author
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Development of an RNA aptamer that acquires binding capacity against HIV-1 Tat protein via G-quadruplex formation in response to potassium ions
Yudai Yamaoki; Takashi Nagata; Tsukasa Mashima; Masato Katahira
CHEMICAL COMMUNICATIONS, Jul. 2017, Peer-reviewed, Corresponding author

Molecular Landscape of the Ribosome Pre-initiation Complex during mRNA Scanning: Structural Role for eIF3c and Its Control by eIF5
Eiji Obayashi; Rafael E. Luna; Takashi Nagata; Pilar Martin-Marcos; Hiroyuki Hiraishi; Chingakham Ranjit Singh; Jan Peter Erzberger; Fan Zhang; Haribabu Arthanari; Jacob Morris; Riccardo Pellarin; Chelsea Moore; Ian Harmon; Evangelos Papadopoulos; Hisashi Yoshida; Mahmoud L. Nasr; Satoru Unzai; Brytteny Thompson; Eric Aube; Samantha Hustak; Florian Stengel; Eddie Dagraca; Asokan Ananbandam; Philip Gao; Takeshi Urano; Alan G. Hinnebusch; Gerhard Wagner; Katsura Asano
CELL REPORTS, Mar. 2017, Peer-reviewed, Lead author
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Structure, Dynamics, and Interaction of p54(nrb)/NonO RRM1 with 5 ' Splice Site RNA Sequence
Jean-Baptiste Duvignaud; Mikael Bedard; Takashi Nagata; Yutaka Muto; Shigeyuki Yokoyama; Stephane M. Gagne; Michel Vincent
BIOCHEMISTRY, May 2016, Peer-reviewed

Characterization of the Deamination Coupled with Sliding along DNA of Anti-HIV Factor APOBEC3G on the Basis of the pH-Dependence of Deamination Revealed by Real-Time NMR Monitoring
Keisuke Kamba; Takashi Nagata; Masato Katahira
FRONTIERS IN MICROBIOLOGY, Apr. 2016, Peer-reviewed, Corresponding author

Accurate and molecular-size-tolerant NMR quantitation of diverse components in solution
Hideyasu Okamura; Hiroshi Nishimura; Takashi Nagata; Takanori Kigawa; Takashi Watanabe; Masato Katahira
SCIENTIFIC REPORTS, Feb. 2016, Peer-reviewed
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The binding specificity of Translocated in LipoSarcoma/FUsed in Sarcoma with lncRNA transcribed from the promoter region of cyclin D1
Ryoma Yoneda; Shiho Suzuki; Tsukasa Mashima; Keiko Kondo; Takashi Nagata; Masato Katahira; Riki Kurokawa
CELL AND BIOSCIENCE, Jan. 2016, Peer-reviewed
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K+-responsive off-to-on switching of hammerhead ribozyme through dual G-quadruplex formation requiring no heating and cooling treatment
Yudai Yamaoki; Takashi Nagata; Tsukasa Mashima; Masato Katahira
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, Dec. 2015, Peer-reviewed, Corresponding author
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Catalytic Analysis of APOBEC3G Involving Real-Time NMR Spectroscopy Reveals Nucleic Acid Determinants for Deamination
Keisuke Kamba; Takashi Nagata; Masato Katahira
PLOS ONE, Apr. 2015, Peer-reviewed, Corresponding author
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Augmentation of multiple protein kinase activities associated with secondary imatinib resistance in gastrointestinal stromal tumors as revealed by quantitative phosphoproteome analysis
Kayoko Nagata; Takao Kawakami; Yoichi Kurata; Yayoi Kimura; Yusuke Suzuki; Takashi Nagata; Yuji Sakuma; Yohei Miyagi; Hisashi Hirano
JOURNAL OF PROTEOMICS, Feb. 2015, Peer-reviewed

Boosting of activity enhancement of K+-responsive quadruplex hammerhead ribozyme
Yudai Yamaoki; Tsukasa Mashima; Takashi Nagata; Masato Katahira
CHEMICAL COMMUNICATIONS, 2015, Peer-reviewed, Corresponding author
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Novel RNA recognition motif domain in the cytoplasmic polyadenylation element binding protein 3
Kengo Tsuda; Kanako Kuwasako; Takashi Nagata; Mari Takahashi; Takanori Kigawa; Naohiro Kobayashi; Peter Guentert; Mikako Shirouzu; Shigeyuki Yokoyama; Yutaka Muto
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, Oct. 2014, Peer-reviewed

Structural Basis for Inhibition of the MDM2:p53 Interaction by an Optimized MDM2-Binding Peptide Selected with mRNA Display
Takashi Nagata; Kie Shirakawa; Naohiro Kobayashi; Hirokazu Shiheido; Noriko Tabata; Yuko Sakuma-Yonemura; Kenichi Horisawa; Masato Katahira; Nobuhide Doi; Hiroshi Yanagawa
PLOS ONE, Oct. 2014, Peer-reviewed, Lead author, Corresponding author

Quantitative Analysis of Location- and Sequence-Dependent Deamination by APOBEC3G Using Real-Time NMR Spectroscopy
Ayako Furukawa; Kenji Sugase; Ryo Morishita; Takashi Nagata; Tsutomu Kodaki; Akifumi Takaori-Kondo; Akihide Ryo; Masato Katahira
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, Feb. 2014, Peer-reviewed
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Binding of an RNA aptamer and a partial peptide of a prion protein: crucial importance of water entropy in molecular recognition
Tomohiko Hayashi; Hiraku Oshima; Tsukasa Mashima; Takashi Nagata; Masato Katahira; Masahiro Kinoshita
NUCLEIC ACIDS RESEARCH, 2014, Peer-reviewed
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1H, 13C, and 15N resonance assignments of the dsRBDs of mouse RNA helicase A
Takashi Nagata; Kengo Tsuda; Naohiro Kobayashi; Peter Güntert; Shigeyuki Yokoyama; Yutaka Muto
Biomolecular NMR Assignments, Apr. 2013, Peer-reviewed, Lead author, Corresponding author

Anti-prion activity of an RNA aptamer and its structural basis.
Tsukasa Mashima; Fumiko Nishikawa; Yuji O Kamatari; Hiromichi Fujiwara; Masayuki Saimura; Takashi Nagata; Tsutomu Kodaki; Satoshi Nishikawa; Kazuo Kuwata; Masato Katahira
Nucleic acids research, Jan. 2013, Peer-reviewed

NMR study of xenotropic murine leukemia virus-related virus protease in a complex with amprenavir
Ayako Furukawa; Hideyasu Okamura; Ryo Morishita; Satoko Matsunaga; Naohiro Kobayashi; Takahisa Ikegami; Tsutomu Kodaki; Akifumi Takaori-Kondo; Akihide Ryo; Takashi Nagata; Masato Katahira
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, Aug. 2012, Peer-reviewed, Corresponding author
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Solution structures of the double-stranded RNA-binding domains from RNA helicase A
Takashi Nagata; Kengo Tsuda; Naohiro Kobayashi; Mikako Shirouzu; Takanori Kigawa; Peter Guentert; Shigeyuki Yokoyama; Yutaka Muto
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, Jun. 2012, Peer-reviewed, Lead author

Structure of Musashi1 in a complex with target RNA: the role of aromatic stacking interactions
Takako Ohyama; Takashi Nagata; Kengo Tsuda; Naohiro Kobayashi; Takao Imai; Hideyuki Okano; Toshio Yamazaki; Masato Katahira
NUCLEIC ACIDS RESEARCH, Apr. 2012, Peer-reviewed, Corresponding author

Intelligent' ribozyme whose activity is altered in response to K plus as a result of quadruplex formation
Takashi Nagata; Yu Sakurai; Yukari Hara; Tsukasa Mashima; Tsutomu Kodaki; Masato Katahira
FEBS JOURNAL, Apr. 2012, Peer-reviewed, Lead author

Structures of the first and second double-stranded RNA-binding domains of human TAR RNA-binding protein
Seisuke Yamashita; Takashi Nagata; Masahito Kawazoe; Chie Takemoto; Takanori Kigawa; Peter Guentert; Naohiro Kobayashi; Takaho Terada; Mikako Shirouzu; Motoaki Wakiyama; Yutaka Muto; Shigeyuki Yokoyama
PROTEIN SCIENCE, Jan. 2011, Peer-reviewed, Lead author

Solution structures of the trihelix DNA-binding domains of the wild-type and a phosphomimetic mutant of Arabidopsis GT-1: Mechanism for an increase in DNA-binding affinity through phosphorylation
Takashi Nagata; Emi Niyada; Natsuki Fujimoto; Yuuya Nagasaki; Kazuaki Noto; Youhei Miyanoiri; Jun Murata; Kazuyuki Hiratsuka; Masato Katahira
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, Nov. 2010, Peer-reviewed, Lead author

Unusual Thermal Disassembly of the SPFH Domain Oligomer from Pyrococcus horikoshii
Yohta Kuwahara; Satoru Unzai; Takashi Nagata; Yoko Hiroaki; Hideshi Yokoyama; Ikuo Matsui; Takahisa Ikegami; Yoshinori Fujiyoshi; Hidekazu Hiroaki
BIOPHYSICAL JOURNAL, Oct. 2009, Peer-reviewed

Structure and real-time monitoring of the enzymatic reaction of APOBEC3G which is involved in anti-HIV activity.
A. Furukawa; T. Nagata; A. Matsugami; Y. Habu; R. Sugiyama; F. Hayashi; N. Kobayashi; S. Yokoyama; H. Takaku; M. Katahira
Nucleic acids symposium series, Sep. 2009, Peer-reviewed

Structure, interaction and real-time monitoring of the enzymatic reaction of wild-type APOBEC3G
Ayako Furukawa; Takashi Nagata; Akimasa Matsugami; Yuichirou Habu; Ryuichi Sugiyama; Fumiaki Hayashi; Naohiro Kobayashi; Shigeyuki Yokoyama; Hiroshi Takaku; Masato Katahira
EMBO JOURNAL, Feb. 2009, Peer-reviewed

Elucidation of the mode of interaction in the UP1telomerase RNAtelomeric DNA ternary complex which serves to recruit telomerase to telomeric DNA and to enhance the telomerase activity
Takashi Nagata; Yusuke Takada; Asami Ono; Kayoko Nagata; Yuki Konishi; Takeshi Nukina; Manami Ono; Akimasa Matsugami; Ayako Furukawa; Natsuki Fujimoto; Hirokazu Fukuda; Hitoshi Nakagama; Masato Katahira
NUCLEIC ACIDS RESEARCH, Dec. 2008, Peer-reviewed, Lead author

N- and C-terminal fragments of a globular protein constructed by elongation of modules as a units associated for functional complementation
Toru Tsuji; Takashi Nagata; Hiroshi Yanagawa
JOURNAL OF BIOCHEMISTRY, Oct. 2008, Peer-reviewed

NMR assignments and the identification of the secondary structure of the anti-retroviral cytidine deaminase
Furukawa A; Nagata T; Habu Y; Sugiyama R; Hayashi F; Yokoyama S; Takaku H; Katahira M
Nucleic acids symposium series, Sep. 2008, Peer-reviewed

Structural analysis of Musashi-RNA complex on the basis of long-range structural information.
T. Ohyama; A. Furukawa; T. Mashima; T. Sugiyama; S. Ohgara; T. Yamazaki; T. Imai; H. Okano; T. Nagata; M. Katahira
Nucleic acids symposium series, Sep. 2008, Peer-reviewed

The RRM domain of poly(A)-specific ribonuclease has a noncanonical binding site for mRNA cap analog recognition
Takashi Nagata; Sakura Suzuki; Ryuta Endo; Mikako Shirouzu; Takaho Terada; Makoto Inoue; Takanori Kigawa; Naohiro Kobayashi; Peter Guntert; Akiko Tanaka; Yoshihide Hayashizaki; Yutaka Muto; Shigeyuki Yokoyama
NUCLEIC ACIDS RESEARCH, Aug. 2008, Peer-reviewed, Corresponding author

Interactions with RNA/DNA of proteins involved in the regulation of transcription, translation and telomere elongation.
T. Ohyama; A. Furukawa; T. Miyoshi; Y. Takada; S. Ohgara; K. Hiratsuka; T. Imai; H. Okano; H. Nakagama; T. Nagata; M. Katahira
Nucleic acids symposium series, Nov. 2007, Peer-reviewed

Origin of higher affinity to RNA of the N-terminal RNA-binding domain than that of the C-terminal one of a mouse neural protein, Musashi1, as revealed by comparison of their structures, modes of interaction, surface electrostatic potentials, and backbone dynamics
Y Miyanoiri; H Kobayashi; T Imai; M Watanabe; T Nagata; S Uesugi; H Okano; M Katahira
JOURNAL OF BIOLOGICAL CHEMISTRY, Oct. 2003, Peer-reviewed

Structure of the C-terminal RNA-binding domain of hnRNP D0 (AUF1), its interactions with RNA and DNA, and change in backbone dynamics upon complex formation with DNA
M Katahira; Y Miyanoiri; Y Enokizono; G Matsuda; T Nagata; F Ishikawa; S Uesugi
JOURNAL OF MOLECULAR BIOLOGY, Aug. 2001, Peer-reviewed

Functional mutagenesis of AML1/RUNX1 and PEBP2 beta/CBF beta define distinct, non-overlapping sites for DNA recognition and heterodimerization by the Runt domain
T Nagata; MH Werner
JOURNAL OF MOLECULAR BIOLOGY, Apr. 2001, Peer-reviewed, Lead author

Molecular insights into the origin of the acute human leukemias revealed from the three-dimensional structure and sub-cellular localization of AML1.
MH Werner; T Nagata; Gupta, V; M Goger; BT Chait; A Sali; WY Kim; K Shigesada; Y Ito
CLINICAL CANCER RESEARCH, Nov. 1999, Peer-reviewed

Immunoglobulin motif DNA recognition and heterodimerization of the PEBP2/CBF Runt domain
T Nagata; Gupta, V; D Sorce; WY Kim; A Sali; BT Chait; K Shigesada; Y Ito; MH Werner
NATURE STRUCTURAL BIOLOGY, Jul. 1999, Peer-reviewed, Lead author

Structure, backbone dynamics and interactions with RNA of the C-terminal RNA-binding domain of a mouse neural RNA-binding protein, Musashi1
T Nagata; R Kanno; Y Kurihara; S Uesugi; T Imai; S Sakakibara; H Okano; M Katahira
JOURNAL OF MOLECULAR BIOLOGY, Mar. 1999, Peer-reviewed, Lead author

Structure and interactions with RNA of the N-terminal UUAG-specific RNA-binding domain of hnRNP D0
T Nagata; Y Kurihara; G Matsuda; J Saeki; T Kohno; Y Yanagida; F Ishikawa; S Uesugi; M Katahira
JOURNAL OF MOLECULAR BIOLOGY, Mar. 1999, Peer-reviewed, Lead author

Structural properties and RNA-binding activities of two RNA recognition motifs of a mouse neural RNA-binding protein, mouse-Musashi-1
Y Kurihara; T Nagata; T Imai; A Hiwatashi; M Horiuchi; S Sakakibara; M Katahira; H Okano; S Uesugi
GENE, Feb. 1997, Peer-reviewed, Lead author

Mouse-Musashi-1, a neural RNA-Binding protein highly enriched in the mammalian CNS stem cell
S Sakakibara; T Imai; K Hamaguchi; M Okabe; J Aruga; K Nakajima; D Yasutomi; T Nagata; Y Kurihara; S Uesugi; T Miyata; M Ogawa; K Mikoshiba; H Okano
DEVELOPMENTAL BIOLOGY, Jun. 1996, Peer-reviewed

MM2 MOLECULAR MECHANICS STUDIES OF PERIPLANONE-B AND NITROXIDES - EMPIRICAL-METHODS TO EVALUATE THE STRETCHING (K(S)) AND BENDING (K(B)) FORCE-CONSTANTS OF THE MM2 FORCE-FIELD
K SAKAKIBARA; H KAWAMURA; T NAGATA; JZ REN; M HIROTA; K SHIMAZAKI; T CHUMAN
BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN, Oct. 1994, Peer-reviewed

Misc.

Highly efficient decomposition of beech wood lignin by lignin peroxidase using a membrane reactor
Kenneth Sze Kai Teo; Keiko Kondo; Kaori Saito; Yu Iseki; Takashi Watanabe; Takashi Nagata; Masato Katahira
The 7th International KBMSS Symposium / 521st Sustainable Humanosphere Symposium, Uji, 2024.1.30, 30 Jan. 2024

Structure-function relationship of fungal feruloyl esterases towards destarched wheat bran
Apisan Phienluphon; Keiko Kondo; Bunzo Mikami; Kenneth Sze Kai Teo; Kaori Saito; Takashi Watanabe; Takashi Nagata; Masato Katahira
The 7th International KBMSS Symposium / 521st Sustainable Humanosphere Symposium, Uji, 2024.1.30, 30 Jan. 2024

Unveiling Atomic-Level Insights into the Influence of Molecular Crowding Environments on Base-Pair Opening/Closing Dynamics in Parallel DNA Triplex Structures
Tomoki Sakamoto; Yudai Yamaoki; Takashi Nagata; Masato; Katahira
ISNAC 2023, Miyazaki Civic Plaza, 2023.11.1-3, Nov. 2023

HIV-1 Vif Directly Inhibits Human APOBEC3G Deaminase Independent of the Ubiquitin-Proteasome Pathway
Keisuke Kamba; Li Wan; Satoru Unzai; Ryo Morishita, Akifumi; Takaori-Kondo; Takashi Nagata; Masato Katahira
ISMAR 2023, Brisbane, 2023.8.20-25, Aug. 2023

Analyzing Dynamics of Base-Pair Opening in DNA Triplex Structures under Molecular Crowding Environment
Tomoki Sakamoto; Yudai Yamaoki; Takashi Nagata; Masato Katahira
ISMAR 2023, Brisbane, 2023.8.20-25, Aug. 2023

Direct inhibition of human APOBEC3 deaminases by HIV-1 Vif independent of the ubiquitination/degradation pathway
Keisuke Kamba; Li Wan; Kentaro Tozawa; Satoru Unzai; Ryo Morishita; Akifumi Takaori-Kondo; Takashi Nagata; Masato Katahira
2024 IUPAB CONGRESS + 62nd Annual Meeting of the Biophysical Society of Japan, 2024.06.24-28, Jun. 2024

HIV-1 Vif-human E3 ubiquitin ligase complex affects deaminase activity of human anti-viral/ cancer related factor APOBEC3
兎澤賢太郎; 神庭圭佑; 岩岡諒; 永田崇; 片平正人
第24回日本蛋白質科学会年会, 札幌コンベンションセンター, 2024.06.11-13, Jun. 2024

The tyrosine residues on the substrate-binding surface of Lytic Polysacchride Monooxigeanase: their effect on the promotion of cellulose degradation
八木勇成; 近藤敬子; Huyen Nguyen; 渡辺隆司; 三上文三; 永田崇; 片平正人
第24回日本蛋白質科学会年会, 札幌コンベンションセンター, 2024.06.11-13, Jun. 2024

A simple preparation method for stable isotope-labeled HBV X protein-derived peptides and an application to weak interaction systems with host proteins by NMR
Hideki Kusunoki; Naohiro Kobayashi; Hajime Wakamatsu; Toshiyuki Tanaka; Takashi Nagata
第24回日本蛋白質科学会年会, 札幌コンベンションセンター, 2024.06.11-13, Jun. 2024, Corresponding author

In-cell NMR analysis on base-pair opening dynamics and interactions with ligands of nucleic acids in living human cells
Yudai Yamaoki; Takashi Nagata; Tomoki Sakamoto; Omar Eladl; Keiko Kondo; Masato Katahira
2024 IUPAB CONGRESS + 62nd Annual Meeting of the Biophysical Society of Japan, 2024.06.24-28, Jun. 2024

Decomposition of sugarcane trash pulp using lytic polysaccharide monooxygenase
八木勇成; 近藤敬子; Huyen Nguyen; 渡辺隆司; 三上文三; 永田崇; 片平正人
日本農芸化学会2024年度大会, 東京農業大学, 2024.3.24-27, Mar. 2024

抗体に結合するaptamerの改変体の結合能の解析
遠藤朱梨; 関口真裕; 阪本智樹; 堀内正隆; 石川岳志; 片平正人; 永田崇; 山岸賢司; 坂本泰一
第46回日本分子生物学会年会, 神戸ポートアイランド, 2023.12.6-8, Dec. 2023

IgGに対するRNA aptamerとChimera aptamerの構造特性の比較
長谷川拓矢; 阪本智樹; 関口真裕; 石川岳志; 片平正人; 永田崇; 山岸賢司; 坂本泰一
第46回日本分子生物学会年会, 神戸ポートアイランド, 2023.12.6-8, Dec. 2023

Analysis of base pair opening-closing dynamics under molecular crowding environment of triplex structure-forming DNAs
Tomoki Sakamoto; Yudai Yamaoki; Takashi Nagata; Masato Katahira
第46回日本分子生物学会年会, 神戸ポートアイランド, 2023.12.6-8, Dec. 2023

Detection of;he;interaction between;DNA-RNA hybrid G-quadruplex structure;predicted specifically binding compou;ds using NMR
Taisei MASUNAGA; Yudai YAMAOKI; Chihiro NAKAYAMA; Keiko KONDO; Takashi NAGATA; Masato KATAHIRA
第46回日本分子生物学会年会, 神戸ポートアイランド, 2023.12.6-8, Dec. 2023

HIV-1 Vif-human E3 ubiquitin ligase complex affects deaminase activity of human APOBEC3A and APOBEC3C
Kentaro Tozawa; Keisuke Kamba; Ryo Iwaoka; Takashi Nagata; Masato Katahira
第46回日本分子生物学会年会, 神戸ポートアイランド, 2023.12.6-8, Dec. 2023

メンブレンリアクターを活用したリグニンペルオキシダーゼによるブナリグニンの高効率分解
ケンネテオジカイ; 近藤敬子; 齋藤香織; 井関優侑; 渡辺隆司; 永田崇; 片平正人
第68回リグニン討論会, シティ・ホールプラザアオーレ長岡, 2023.11.9-10, Nov. 2023

In-cell NMR study on the interaction of HIV Tat-binding RNA aptamer with its target molecule in living human cells
Yudai Yamaoki; Omar Eladl; Keiko Kondo; Takashi Nagata; Masato Katahira
The 62nd Annual Meeting of the Nuclear Magnetic Resonance Society of Japan (2023), Nov. 2023, Peer-reviewed

Analysis of the effect of molecularly crowded environment on the base pair opening/closing dynamics of DNA triplex structure
Tomoki Sakamoto; Yudai Yamaoki; Takashi Nagata; Masato Katahira
The 62nd Annual Meeting of the Nuclear Magnetic Resonance Society of Japan (2023), Nov. 2023, Peer-reviewed

Investigation of the internal environment of DNA droplet by NMR
Takashi Nagata; Yudai Yamaoki; Aika Kawakami; Keiko Kondo; Tomoki Sakamoto; Masato Katahira
The 62nd Annual Meeting of the Nuclear Magnetic Resonance Society of Japan (2023), Nov. 2023, Peer-reviewed, Lead author

In-cell NMR study of the structure and interaction of an RNA aptamer targeting HIV-1 Tat within living human cells
Omar Eladl; Yudai Yamaoki; Keiko Kondo; Takashi Nagata; Masato Katahira
ISNAC 2023, Miyazaki Civic Plaza, 2023.11.1-3, Nov. 2023

Detection of the interaction between DNA-RNA hybrid G-quadruplex structure and G-quadruplex-binding peptide using NMR
Taisei MASUNAGA; Yudai YAMAOKI; Chihiro NAKAYAMA; Keiko KONDO; Takashi NAGATA; Masato KATAHIRA
第61回日本生物物理学会年会, 名古屋国際会議場, 2023.11.14-16, Nov. 2023

RGGYX から成る環状ペプチドの構造解析
藤本和久; 山口朋也; 永田崇; 片平正人; 深澤海斗; 大吉崇文
第17回バイオ関連化学シンポジウム, 第38回生体機能関連化学シンポジウム, 第26回バイオテクノロジー部会シンポジウム, 東京理科大学野田キャンパス薬学部, 2023.9.8-10, Sep. 2023

ヒト生細胞内核酸の構造ダイナミクスの in-cell NMR法による解析
山置佑大; 永田崇; 近藤敬子; 阪本知樹; Eladl Omar; 片平正人
第17回バイオ関連化学シンポジウム, 第38回生体機能関連化学シンポジウム, 第26回バイオテクノロジー部会シンポジウム, 東京理科大学野田キャンパス薬学部, 2023.9.8-10, Sep. 2023

Promoting effects of soluble polysaccharide monooxygenase from selective white rot fungi on saccharification of sugarcane trash
Eri Oga; Yusei Yagi; Keiko Kondo; Hiroyuki Okano; Takashi Watanabe; Takashi Nagata; Masato Katahira
セルロース学会第30回年次大会, 広島国際会議場, 2023.9.28-29, Sep. 2023

結晶性セルロースの分解におけるセルラーゼと選択的白色腐朽菌由来LPMO9のシナジー効果
八木勇成; 近藤敬子; Huyen Nguyen; 井関優侑; 奥岡奈宜; 渡辺隆司; 三上文三; 永田崇; 片平正人
セルロース学会第 29 回年次大会, 2022.7.20-22, 金沢市文化ホール, Jul. 2022

The first detection of the formation of the DNA triplex structure in living human cells and an analysis of the dynamics of base pair opening under molecular crowding environment
Tomoki Sakamoto; Yudai Yamaoki; Takashi Nagata; Masato Katahira
第103回日本化学会2023,東京理科大学野田キャンパス, 2023.3.22-25, Mar. 2023

The molecular level elucidation of a Ceriporiopsis subvermispora manganese peroxidase-catalyzed conversion of a phenolic lignin dimer
Kenneth Sze Kai Teo; Keiko Kondo; Takashi Nagata; Masato Katahira
第73回日本木材学会大会, 2023.3.14-16, 福岡大学・九州大学病院キャンパス, Mar. 2023

Analysis of depolymerization of cellulose catalyzed by LPMO from Ceriporiopsis subvermispora
Yu Iseki; Nagi Okuoka; Tomohiro Hashizume; Keiko Kondo; Takashi Nagata; Masato Katahira; Takashi Watanabe
第73回日本木材学会大会, 2023.3.14-16, 福岡大学・九州大学病院キャンパス, Mar. 2023

Interaction analysis between carbohydrate binding module of Trichoderma reesei Cel7A and dehydrogenation polymer
Takaki Uchida; Yuki Tokunaga; Takashi Nagata; Keiko Kondo; Masato Katahira; Takashi Watanabe
第73回日本木材学会大会, 2023.3.14-16, 福岡大学・九州大学病院キャンパス, Mar. 2023

Co-displaying of xylanase and feruloyl esterase on the Pichia pastoris cell surface
Apisan Phienluphon; Keiko Kondo; Takashi Nagata; Masato Katahira
第73回日本木材学会大会, 2023.3.14-16, 福岡大学・九州大学病院キャンパス, Mar. 2023

The synergistic effect on crystalline cellulose degradation between cellulases and LPMO9 of selective white rot fungi
Yusei Yagi; Keiko Kondo; Huyen Nguyen; Yu Iseki; Nagi Okuoka; Takashi; Watanabe; Bunzo Mikami; Takashi Nagata; Masato Katahira
The 5th International Cellulose Conference [ICC2022+1](1st CIRCULAR),International Conference Center Hiroshima, Hiroshima, 2022.9.26-29, Sep. 2022

Investigation of the structural dynamics and interactions of RNAs in living human cells by in-cell NMR
Yudai Yamaoki; Omar Eladl; Keiko Kondo; Tomoki Sakamoto; Takashi Nagata; Masato Katahira
第23回日本RNA学会,みやこめっせ,京都, 2022.7.20-22, Jul. 2022

2G1412 NMR study of XMRV protease in complex with an inhibitor(Protein: Structure 2,The 48th Annual Meeting of the Biophysical Society of Japan)
Okamura Hideyasu; Matsunaga Tomoko; Furukawa Ayako; Sato Yusuke; Iwaoka Ryo; Nagata Takashi; Kobayashi Naohiro; Takaori Akifumi; Morishita Ryo; Ryo Akihide; Katahira Masato
Seibutsu Butsuri, 2011

Additive effect of the interactions between the components of HIV-1-Vif: E3 ubiquitin ligase and human APOBEC3G may elevate the antiviral activity of APOBEC3G
神庭圭佑; WAN Li; WAN Li; 雲財悟; 森下了; 高折晃史; 永田崇; 永田崇; 片平正人; 片平正人
日本分子生物学会年会プログラム・要旨集(Web), 2022

HIV-1のRevペプチド変異体の調製とペプチド変異体とRRE RNAの相互作用のNMR解析
渡邊なつき; 武田有未; COLIN Smith; 永田崇; 片平正人; 河野俊之; 坂本泰一
日本生化学会大会(Web), 2017

テロメア配列RNA結合性蛋白質hnRNPDの構造及びRNAとの相互作用
片平正人; 永田崇; 佐伯純一; 栗原靖之; 上杉晴一; 河野俊之; 梶田保子; 石川冬木
日本生物物理学会年会講演予稿集, 1996

RNAi関連因子hTRBP2の構造生物学的解析
山下征輔; 山下征輔; 川添将仁; 竹本千重; 赤坂領吾; 永田崇; 武藤裕; 木川隆則; 木川隆則; 滝元宏治; 脇山素明; 横山茂之
日本分子生物学会年会講演要旨集, 2009

Physicochemical analysis of the droplets formed by nucleic acids using NMR spectroscopy
Aika Kawakami; Yudai Yamaoki; Keiko Kondo; Tomoki Sakamoto; Takashi Nagata; Masato Katahira
第45回日本分子生物学会年会日本生物物理学会共催, 幕張メッセ, 2022.11.30-12.2, Dec. 2022

Base-pair opening dynamics of nucleic acids in living human cells studied by in-cell NMR
Yudai Yamaoki; Takashi Nagata; Tomoki Sakamoto; Omar Eladl; Aika Kawakami; Keiko Kondo; Masato Katahira
第45回日本分子生物学会年会日本生物物理学会共催, 幕張メッセ, 2022.11.30-12.2, Dec. 2022

Analysis of base-pair opening/closing dynamics of DNA triplex structure under molecular crowding environment using R1ρ relaxation dispersion experiment
Tomoki Sakamoto; Yudai Yamaoki; Takashi Nagata; Masato Katahira
The 61st Annual Meeting of the Nuclear Magnetic Resonance Society of Japan (2002), 2022.11.8-10, Nov. 2022, Peer-reviewed

NMR analysis of the interaction between the C-terminal-truncated hepatitis B virus X protein (HBx) peptide and anti-apoptotic protein Bcl-xL
Hideki Kusunoki; Taiichi Sakamoto; Toshiyuki Kohno; Kaori Wakamatsu; Isao Hamaguchi; Takashi Nagata
The 61st Annual Meeting of the Nuclear Magnetic Resonance Society of Japan (2002), 2022.11.8-10, Nov. 2022, Peer-reviewed

Base-pair opening dynamics of nucleic acids in living human cells studied by in-cell NMR
Yudai Yamaoki; Takashi Nagata; Keiko Kondo; Tomoki Sakamoto; Omar Eladl; Masato Katahira
The 61st Annual Meeting of the Nuclear Magnetic Resonance Society of Japan (2002), 2022.11.8-10, Nov. 2022, Peer-reviewed

Base-pair opening dynamics and interactions with ligands of nucleic acids in living human cells studied by in-cell NMR
Yudai Yamaoki; Omar Eladl; Keiko Kondo; Tomoki Sakamoto; Takashi Nagata; Masato Katahira
ISNAC 2022, Tokyo Univ. Sci., 2022.11.2-4, 02 Nov. 2022, Peer-reviewed

Analysis of the structure and dynamics of triplex forming oligodeoxynucleotide in living human cells
Tomoki Samakoto; Yudai Yamaoki; Takashi Nagata; Masato Katahira
The 60th Annual Meeting of the Biophysical Society of Japan, 2022.9.28-30, Hakodate Arena/Hakodate Citizen Hall, hybrid, 28 Sep. 2022

In silico approach for identification of the thermodynamic profiles of aptamer-IgG binding
Ryoji Yamazaki; Azumi Ito; Tomoki Sakamoto; Masaki Komine; Takeshi Ishikawa; Masato Katahira; Takashi Nagata; Taiichi Sakamoto; Kenji Yamagishi
The 60th Annual Meeting of the Biophysical Society of Japan, 2022.9.28-30, Hakodate Arena/Hakodate Citizen Hall, hybrid, 27 Sep. 2022

2P-107 A simultaneous RNA-binding mode of two RNA-binding domains of Musashi-1 analyzed by paramagnetic effects, PRE, PCS, and RDC(The 46th Annual Meeting of the Biophysical Society of Japan)
Nagata Takashi; Ohyama Takako; Furukawa Ayako; Sugiyama Takashi; Mashima Tsukasa; Imai Takao; Okano Hideyuki; Yamazaki Toshio; Katahira Masato
Seibutsu Butsuri, 2008

Comparison of dynamics between two RNA-binding domains of Musashi1.
Watanabe M.; Kobayashi H.; Ichikawa T.; Nagata T.; Kanno R.; Okano H.; Uesugi S.; Katahira M.
Seibutsu Butsuri, 1999

神経系特異的RNA結合タンパク質マウスMusashi-1の2つのRNPモチーフのRNA結合能と二次構造
栗原靖之; 永田崇; 樋渡亜土; 今井貴雄; 榊原伸一; 岡野栄之; 片平正人; 上杉晴一
日本分子生物学会年会プログラム・講演要旨集, 01 Aug. 1996

UUAGGG配列結合蛋白質hnRNP-Dの構造及びRNAとの相互作用のNMRによる研究
永田崇; 片平正人; 佐伯純一; 栗原靖之; 上杉晴一; 梶田保子; 石川冬木; 河野俊之
日本分子生物学会年会プログラム・講演要旨集, 01 Aug. 1996

Structure, dynamics and interactions with RNA of neural RNA-binding protein, Musashi.
Kobayashi H.; Nagata T.; Kanno R.; Saeki J.; Kurihara Y.; Imai T.; Sakakibara S.; Okano H.; Uesugi S.; Katahira M.
Biophysics, 07 Sep. 1998

Structure and stability of a mouse neural specific RNA binding protein, mouse-Musashi-1
KANNO R.; NAGATA T.; SAEKI J.; KOBAYASHI H.; HIWATASHI A.; KURIHARA Y.; IMAI T.; SAKAKIBARA S.; OKANO H.; KONO T.; KATAHIRA M.; UESUGI S.
Biophysics, Oct. 1997

Development of the RNA aptamer that binds to Vif complex
熊谷紀志; 鈴木拓也; 関川湧斗; 神庭圭佑; 万里; 永田佳代子; 高折晃史; 片平正人; 永田崇; 坂本泰一
日本核酸医薬学会第7回年会,2022.07.31-08.03,御茶ノ水ソラシティカンファレンスセンター, 31 Jul. 2022

Molecular mechanism of deamination inhibition of anti-viral factor APOBEC3G by ﬁve-membered complex of HIV-1 Vif and host proteins
神庭圭佑; 雲財悟; 森下了; 高折晃史; 永田崇; 片平正人
第22回日本蛋白質科学会年会,2022.06.07-09, つくば国際会議場, 07 Jun. 2022

Effect of site-directed mutagenesis of Aspergillus sydowii feruloyl esterase on substrate preference
Apisan Phienluphon; Keiko Kondo; Takashi Nagata; Masato Katahira
The 2022 Annual Meeting of the Japan Society for Bioscience, Biotechnology and Agrochemistry, 2022.3.15-18, on-line, 18 Mar. 2022

A challenge to lignocellulose degradation by a laser
Takayasu Kawasaki; Takeshi Sakai; Yoske Sumitomo; Kyoko Nogami; Ken Hayakawa; Takashi Nagata; Heishun Zen; Yasushi Hayakawa
The 2022 Annual Meeting of the Japan Society for Bioscience, Biotechnology and Agrochemistry, 2022.3.15-18, on-line, 15 Mar. 2022

The synergistic effect on cellulose degradation of LPMO9 of wood rot fungi, Ceriporiopsis subvermispora
Yusei Yagi; Keiko Kondo; Huyen Nguyen; Takashi Watanabe; Bunzo Mikami; Takashi Nagata; Masato Katahira
The 2022 Annual Meeting of the Japan Society for Bioscience, Biotechnology and Agrochemistry, 2022.3.15-18, on-line, 15 Mar. 2022

Cell surface display of fungal feruloyl esterase in Pichia pastoris
Apisan Phienluphon; Keiko Kondo; Takashi Nagata; Masato Katahira
The 72nd Annual Meeting of Japan Wood Research Society, 2022.3.15-17, Nagoya-Gifu, on-line, 15 Mar. 2022

Boost in beech wood’s lignin degradation by heterogeneously expressed manganese peroxidase by using a semi-continuous bioreactor system
Sze Kai Kenneth Teo; Keiko Kondo; Takashi Nagata; Masato Katahira
The 72nd Annual Meeting of Japan Wood Research Society, 2022.3.15-17, Nagoya-Gifu, on-line, 15 Mar. 2022

Structural analysis of ester-type lignin-carbohydrate linkages
Hiroshi Nishimura; Kazuma Nagata; Takashi Nagata; Masato Katahira; Takashi Watanabe
The 72nd Annual Meeting of Japan Wood Research Society, 2022.3.15-17, Nagoya-Gifu, on-line, 15 Mar. 2022

The structure and dynamics of DNA and RNA in living human cells studied by in-cell NMR
Yudai Yamaoki; Takashi Nagata; Tomoki Sakamoto; Shohei Takami; Masato Katahira
Pacifichem 2021, virtual, 16 Dec. 2021, Peer-reviewed

Analysis of enzymatic cleavage of lignin-carbohydrate linkage in woody biomass by fungal glucuronoyl esterase
Keiko Kondo; Yuta Sakurai; Yuka Yonezawa; Meng-I Lin; Takashi Nagata; Masato Katahira
Pacifichem 2021, virtual, 16 Dec. 2021, Peer-reviewed

Structural and physical basis for anti-prion activity and destruction of the Alzheimer’s disease-related complex of an RNA-aptamer
Takashi Nagata; Tsukasa Mashima; Joon-Hwa Lee; Yuji O. Kamatari; Tomohiko Hayashi; Masahiro Kinoshita; Kazuo Kuwata; Masato Katahira
Pacifichem 2021, virtual, 16 Dec. 2021, Peer-reviewed, Lead author

NMR analysis of RNA aptamer that binds to Vif complex
Yuta-Sekigami; Kazuyuki Kumagai; Takuya Suzuki; Yuto Sekikawa; Keisuke Kamba; Li Wan; Kayoko Nagata; Akifumi Takaori-Kondo; Masato Katahira; Takashi Nagata; Taiichi Sakamoto
The 44th Annual Meeting of the Molecular Biology Society of Japan, 2021.12.1-3, Pacifico Yokohama, Dec. 2021

NMR analysis of the interactions between DNA:RNA hybrid G-quadruplex and arginine-glycine-rich peptides
Chihiro Nakayama; Yudai Yamaoki; Takashi Nagata; Masato Katahira
The 44th Annual Meeting of the Molecular Biology Society of Japan, 2021.12.1-3, Pacifico Yokohama, Dec. 2021

Development of AFM-based quadruplex DNA evaluation method using machine learning
Yoichiro Tanaka; Takashi Nagata; Chika Sugimoto; Toshio Ogino
The 44th Annual Meeting of the Molecular Biology Society of Japan, 2021.12.1-3, Pacifico Yokohama, Dec. 2021

Effect of the charged residues on inhibition of APOBEC3G by HIV-1 Vif
Kamba K; Wan L; Unzai S; Morishita R; Nagata T; Katahira M
The 44th Annual Meeting of the Molecular Biology Society of Japan, 2021.12.1-3, Pacifico Yokohama, Dec. 2021

Structural basis for Musashi-1-RNA complex formation
Tu WH; Kamba K; Imai T; Kobayashi N; Guntert P; Nagata T; Katahira M
The 44th Annual Meeting of the Molecular Biology Society of Japan, 2021.12.1-3, Pacifico Yokohama, Dec. 2021

NMR Analysis of Interaction between Artificial Peptides and RNAs Derived from HIV-1 Rev and RRE RNA
Sakamoto T; Nagata T; Koji R; Maeda T; Takeda Y; Kobayashi N; Guntert P; Katahira M; Smith CA; Harada K
Joint Conference of ISMAR-APNMR-NMRSJ-SEST 2021, on-line, 21.08.23-27, 22 Aug. 2021, Peer-reviewed

Structural basis for Musashi-1-RNA complex formation
Tu WH; Kamba K; Imai T; Kobayashi N; Guntert P; Nagata T; Katahira M
Joint Conference of ISMAR-APNMR-NMRSJ-SEST 2021, on-line, 21.08.23-27, 22 Aug. 2021, Peer-reviewed

NMR spectroscopic analysis of enzymatic cleavage of lignin-carbohydrate linkage in woody biomass by fungal glucuronoyl esterase
Kondo K; Sakai Y; Yonezawa Y; Meng-I, L; Nagata T; Katahira M
Joint Conference of ISMAR-APNMR-NMRSJ-SEST 2021, on-line, 21.08.23-27, 22 Aug. 2021, Peer-reviewed

In-cell NMR analysis of the DNA triplex structures inside the living human cells
Sakamoto T; Yamaoki Y; Nagata T; Katahira M
Joint Conference of ISMAR-APNMR-NMRSJ-SEST 2021, on-line, 21.08.23-27, 22 Aug. 2021, Peer-reviewed

In-cell NMR Analysis of the Structure and Dynamics of Hairpin and G-quadruplex Structures in the Living Human Cells
Yamaoki Y; Nagata T; Kondo K; Sakamoto T; Takami S; Katahira M
Joint Conference of ISMAR-APNMR-NMRSJ-SEST 2021, on-line, 21.08.23-27, 22 Aug. 2021, Peer-reviewed

Catalytic analysis demonstrates that the inhibition of deamination reaction of A3G by Vif complex can be independent of A3G's ubiquitination
Kamba K; Wan L; Unzai S; Morishita R; Nagata T; Katahira M
Joint Conference of ISMAR-APNMR-NMRSJ-SEST 2021, on-line, 21.08.23-27, 22 Aug. 2021, Peer-reviewed

Study of the Interaction Between Human Origin Recognition Complex Subunit 1 and G-quadruplex Forming Nucleic Acids
Afaf Eladl; Yudai Yamaoki; Shoko Hoshina; Haruka Horinouchi; Keiko Kondo; Takashi Nagata; Shou Waga; Masato Katahira
Joint Conference of ISMAR-APNMR-NMRSJ-SEST 2021, on-line, 21.08.23-27, 22 Aug. 2021, Peer-reviewed

様々な合成条件で調製した Dehydrogenation polymer の性状解析
德永有希; 永田崇; 近藤敬子; 片平正人; 渡辺隆司
第71回日本木材学会大会, 2021.3.19-21, 東京農工大学府中キャンパス, on-line, Mar. 2021

選択的白色腐朽菌由来の溶解性多糖モノオキシゲナーゼとセルラーゼのシナジー効果の検証
Yagi Y; Kondo K; Nagata T; Katahira M
第71回日本木材学会大会, 2021.3.19-21, 東京農工大学府中キャンパス, on-line, Mar. 2021

Screening and heterologous expression of fungal feruloyl esterases, a lignin- carbohydrate complex degrading enzymes, in Pichia pastoris X-33
Phienluphon A; Kondo K; Nagata T; Katahira M
日本農芸化学会2021年度仙台大会, 2021.3.18-21, on-line, Mar. 2021

Analysis of the interaction between Msi1 RBD1-RBD2 and RNAs
Tu. W. H; Kamba K; Nagata T; Katahira M
第43回日本分子生物学会年会, 2020.12.2-4, online, 03 Dec. 2020

腐朽菌由来グルクロノイルエステラーゼによる天然リグニン-多糖複合体の分解活性評価
米沢柚香; 近藤敬子; 坂井勇太; 林孟宜; 永田崇; 片平正人
第 43 回日本分子生物学会年会, 2020.12.2-4, オンライン開催, 02 Dec. 2020

Investigation of the interaction between human origin recognition complex subunit 1 and G-rich DNAs
A. Eladl; Y. Yamaoki; S. Hoshina; H. Horinouchi, K; Kondo; O. Eladl; T. Nagata; S. Waga
第 43 回日本分子生物学会年会, 2020.12.2-4, オンライン開催, Dec. 2020

好冷菌 Sclerotinia borealis 由来 β-グルコシダーゼのクローニングおよびキャラクタリゼーション
堀内正隆; 国永史郎; 齋藤泉; 片平正人; 永田崇
第 43 回日本分子生物学会年会, 2020.12.2-4, オンライン開催, Dec. 2020

In-cell NMR 法による非標準構造を形成する DNA のヒト生細胞内観測
阪本知樹; 山置佑大; 永田崇; 片平正人
第 43 回日本分子生物学会年会, 2020.12.2-4, オンライン開催, Dec. 2020

NMR analysis of aptamers that bind to the Vif-CBFβ-CUL5-ELOB-ELOC complex
Kumagai K; Suzuki T; Sekikawa Y; Kamba K; Wan L; Nagata K; Takaori A; Katahira M; Nagata T; Sakamoto T
第59回NMR討論会(2020), Gメッセ群馬(高崎), 2020.11.17-19, 19 Nov. 2020

HIV Vif 5者複合体はAPOBEC3GとAPOBEC3Fの脱アミノ化を阻害する
神庭圭佑; 万里; 雲財悟; 森下了; 永田崇; 片平正人
第59回NMR討論会(2020), Gメッセ群馬(高崎), 2020.11.17-19, 17 Nov. 2020

有機溶媒-水系におけるb-O-4結合型リグニンオリゴマーモデルの2次元NMRスペクトルの帰属と高次構造の解析
Yuki Tokunaga; Takashi Nagata; Keiko Kondo; Masato Katahira; Takashi Watanabe
第17回持続的生存圏創成のためのエネルギー循環シンポジウム・第10回先進素材開発解析システム（ADAM）シンポジウム, Kyoto Univ., Uji, 2020.10.30, Oct. 2020

Research and development of enzymatic activity control using VHH antibody
A. Takaori-Kondo; T. Nagata
The 11th International Symposium of Advanced Energy Science, Kyoto Univ., Uji, 2020.9.15-16, 15 Sep. 2020

NMR analysis for the development of artificial RNAs to control biomolecular functions
K. Kumagai; T. Suzuki; Y. Sekikawa; K. Kamba; L. Wan; K. Nagata; A. Takaori-Kondo; M. Katahira; T. Nagata
The 11th International Symposium of Advanced Energy Science, Kyoto Univ., Uji, 2020.9.15-16, 15 Sep. 2020

Elucidation of correlation between G-quadruplex-based gene expression regulation and their structure
Y. Tanaka; T. Nagata; T. Ogino
The 11th International Symposium of Advanced Energy Science, Kyoto Univ., Uji, 2020.9.15-16, 15 Sep. 2020

NMR analysis of the three-dimensional solution structure of the sequence-specific RNA-binding protein Musashi involved in translation control of the downstream target RNA
W.-H. Tu; K. Kamba; T. Nagata; M. Katahira; T. Imai
The 11th International Symposium of Advanced Energy Science, Kyoto Univ., Uji, 2020.9.15-16, 15 Sep. 2020

Development of the crystalline cellulose degradation system consisting of the psychrophilic fungus-type hybrid enzymes
M. Horiuchi; S. Kuninaga; I. Saito; M. Katahira; T. Nagata
The 11th International Symposium of Advanced Energy Science, Kyoto Univ., Uji, 2020.9.15-16, 15 Sep. 2020

Interaction analysis between cellulase carbohydrate-binding module and lignin by ultra-high sensitivity NMR for biorefinery
Takashi Watanabe; Yuki Tokunaga; Takashi Nagata; Keiko Kondo; Masato Katahira
The 11th International Symposium of Advanced Energy Science, Kyoto Univ., Uji, 2020.9.15-16, Sep. 2020

Heterologous expression and oxidative activity of four fungal ligninolytic enzymes by Pichia pastoris
Kenneth TSK; Kondo K; Nagata T; Katahira M
日本農芸化学会2020年度大会, 2020.3.25-28, 九州大学伊都キャンパス, 25 Mar. 2020

選択的白色腐朽菌が産する溶解性多糖モノオキシゲナーゼの構造および活性の解析
Kondo K; Nguyen H; Wangsamihardja A; Kodaki T; Mikami B; Watanabe T; Nagata T; Katahira M
日本農芸化学会2020年度大会, 2020.3.25-28, 九州大学伊都キャンパス, 25 Mar. 2020

リグニン・多糖複合体分解に関与する白色腐朽菌由来グルクロノイルエステラーゼの速度論解析および添加剤耐性
Sakai Y; Lin MI; Hiyama A; Yonezawa Y; Kondo K; Nagata T; Katahira M
日本農芸化学会2020年度大会, 2020.3.25-28, 九州大学伊都キャンパス, 25 Mar. 2020

In-cell NMR法を用いた非標準構造を形成する核酸の構造安定性の解析
Sakamoto T; Yamaoki Y; Kano F; Murata M; Nagata T; Katahira M
第100回日本化学会年会, 2020.3.22-25, 東京理科大学, 22 Mar. 2020

リグニンオリゴマーモデルとセルラーゼ糖質結合モジュール間の相互作用を原子・分子レベルで可視化するためのNMR解析
Tokunaga Y; Nagata T; Kondo K; Katahira M; Watanabe T
第70回日本木材学会大会, 2020.3.16-18, 鳥取大学, 16 Mar. 2020

Oxidative activity of four heterologously expressed fungal ligninolytic enzymes by Pichia pastoris
Kenneth TSK; Kondo K; Nagata T; Katahira M
第70回日本木材学会大会, 2020.3.16-18, 鳥取大学, 16 Mar. 2020

STRUCTURAL AND PHYSICAL BASIS FOR THE HIGHER AFFINITY TO ONCOPROTEIN MDM2 OF A PEPTIDE SELECTED WITH MRNA DISPLAY OVER TUMOR SUPPRESSOR P53
Nagata T; Yamada T; Hayashi T; Hikiri S; Kobayashi N; Ikeguchi M; Katahira M; Kinoshita M; Yanagawa H
64th Annual Meeting of the Biophysical Society, San Diego, 2020.2.15-19, 16 Feb. 2020, Lead author

安定同位体標識リグニンオリゴマーモデルを用いたセルラーゼ糖質結合モジュールとの相互作用解析
Tokunaga Y; Nagata T; Kondo K; Katahira M; Watanabe T
第402回生存圏シンポジウム第16回持続的生存圏創成のためのエネルギー循環シンポジウム−マイクロ波高度利用と先端分析化学−・第9回先進素材開発解析システム（ADAM）シンポジウム−マイクロ波高度利用生存圏フラッグシップ共同研究−, 2019.12.18, 京都大学宇治キャンパス, 18 Dec. 2019

AFMで測定したDNA粒子の特徴抽出と機械学習による四重鎖判別法の開発
田中陽一郎; 永田崇; 萩野俊郎
第42回日本分子生物学会年会, 福岡国際会議場(福岡)2019.12.3-6, Dec. 2019

NADPH再生系を内包するハイブリッド型アゾレダクターゼの開発
堀内正隆; 永田崇; 片平正人; 小橋川敬博; 鈴木定彦; 落合正則
第42回日本分子生物学会年会, 福岡国際会議場(福岡)2019.12.3-6, Dec. 2019

Promoter associated non-coding RNA, pncRNA, can diminish the aggregation of TLS caused by shearing stress
Hamad NH; Mashima T; Yamaoki Y; Kondo K; Yoneda R; Kurokawa R; Nagata T; Katahira, M
第42回日本分子生物学会年会, 福岡国際会議場(福岡)2019.12.3-6, Dec. 2019

Ubiquitination independent inhibition of the human APOBEC3G by HIV Vif
Kamba K; Wan L; Unzai S; Morishita R; Nagata T; Katahira M
第42回日本分子生物学会年会, 福岡国際会議場(福岡)2019.12.3-6, Dec. 2019

Characterization of aptamers that bind to the Vif - CBFβ - CUL 5 - ELOB - ELOC complex
Kumagai K; Suzuki T; Sekikawa Y; Kamba K; Wan Li; Nagata K; Takaori-Kondo T; Katahira M; Nagata T; Sakamoto T
第42回日本分子生物学会年会, 福岡国際会議場(福岡)2019.12.3-6, Dec. 2019

X-ray crystal structure analysis and activity assay of lytic polysaccharide monooxygenase originated from selective white-rot fungus
Kondo K; Nguyen H; Wangsamihardja A; Kodaki T; Mikami B; Watanabe T; Nagata T; Katahira M
第42回日本分子生物学会年会, 福岡国際会議場(福岡)2019.12.3-6, Dec. 2019

Analysis of structure and dynamics of nucleic acids introduced inside the living human cells by in-cell NMR
Yamaoki Y; Nagata T; Sakamoto T; Takami S; Kano F; Murata M; Katahira M
第42回日本分子生物学会年会, 福岡国際会議場(福岡)2019.12.3-6, Dec. 2019

in-cell NMR analysis of the non-canonical structure of nucleic acids introduced inside the living human cells: the formation and the stability
Sakamoto T; Yamaoki Y; Kano F; Murata M; Nagata T; Katahira M
第42回日本分子生物学会年会, 福岡国際会議場(福岡)2019.12.3-6, Dec. 2019

Analysis of nucleic acid-ligand interaction inside the living human cells by in-cell NMR
Takami S; Yamaoki Y; Kano F; Murata M; Sakamoto T; Harada K; Nagata T; Katahira M
第42回日本分子生物学会年会, 福岡国際会議場(福岡)2019.12.3-6, Dec. 2019

In-cell NMR studies on structural stabilities of DNA and RNA introduced inside the living human cells
Yamaoki Y, Nagata T, Takami S, Sakamoto T, Katahira M
The 58th Annual Meeting of the NMR Society of Japan (2019), Kawasaki Convention Hall (Kawasaki)2019.11.7-9, 09 Nov. 2019

Structural and functional study of anti-prion aptamers having high activity
Nagata T; Mashima T; Lee JH; Kamatari YO; Hayashi T; Kinoshita, M; Kuwata K; Katahira M
The 58th Annual Meeting of the NMR Society of Japan(2019)(Joint Annual Meeting of the 58th NMRJ & the 58th SEST)2019.11.7-9, Nov. 2019

Evaluation of the structure and dynamics of nucleic acids inside the living human cells by in-cell NMR spectroscopy
山置佑大, 永田崇, 清石彩華, 三宅雅之, 加納ふみ, 村田昌之, 片平正人
第57回日本生物物理学会年会, シーガイア(宮崎), 2019.9.24-26, Sep. 2019

Fractionation and analysis of lignin-carbohydrate complex using lignin-degrading enzymes
Saho Kashima; Hiroshi Nishimura; Shizuka Sakon; Misato Yamada; Yasuhiro Shimane; Yukari Ohta; Keiko Kondo; Yudai Yamaoki; Takashi Nagata; Masato Katahira; Takashi Watanabe
1st International Lignin Symposium (ILS), 20190914, Hokkaido Univ., Sep. 2019

Interaction analysis between cellulase carbohydrate-binding module and lignin by ultra-high sensitivity NMR for biorefinery
Watanabe, T; Tokunaga, Y; Ohshiro S; Nishimura, H; Kishimoto, T; Nakamura, M; Kondo, K; Nagata, T; Katahira, M
The 10th International Symposium of Advanced Energy Science, Kyoto Univ., Uji, 2019.9.4-6, Sep. 2019

The observation of in-cell NMR signals of nucleic acids in living human cells
Yamaoki Y; Kiyoishi A; Miyake M; Lin KH; Kano F; Murata M; Nagata T; Katahira M
7th International Meeting of Quadruplex Nucleic Acids, Changchun, 2019.09.06-09, Sep. 2019

Inhibition mechanism of HIV Vif–human E3 ubiquitin ligase complex against enzymatic activity of APOBEC3G
Kamba K; Wan L; Unzai S; Morishita R; Nagata T; Katahira M
The 57th Annual Meeting of The Biophysical Society of Japan, Miyazaki, 2019.09.24-26, Sep. 2019

The effect of the distance between the RNA sequences recognized by two RNA-binding domains on the affinity of the MSI1-RNA interaction
Tu WH; Kamba K; Nagata T; Katahira M
The 57th Annual Meeting of The Biophysical Society of Japan, Miyazaki, 2019.09.24-26, Sep. 2019

NMR Analysis for Molecular Insight into the Interaction between Lignin and Carbohydrate Binding Module of Cel7A from Trichoderma reesei
Tokunaga, Y; Nagata, T; Kondo, K; Katahira, M; Watanabe, T
The 20th International Symposium on Wood, Fiber and Pulping Chemistry, Univ. Tokyo, 2019.09.09-11, Sep. 2019

Structural analyses of covalent linkages between lignin and hemicellulose in wood cell walls
H. Nishimura; K. Nagata; M. Yamada; T. Nagata; M. Katahira; T. Watanabe
1st International Lignin Symposium, Sapporo. 2019.9.13-15, Sep. 2019

NMR study on Binding Sites of 13C-Lignin Oligomer Models with Carbohydrate Binding Module of Cel7A from Trichoderma reesei
Tokunaga, Y; Nagata, T; Kondo, K; Katahira, M; Watanabe, T
1st International Lignin Symposium, Sapporo. 2019.9.13-15, Sep. 2019

Strategy of lignocellulose conversion using catalysts with controlled affinity to lignin
Watanabe, T; Tokunaga, Y; Oshiro, S; Saito, K; Okano, H; Nishimura, H; Nagata, T; Kondo, K; Katahira, M; Isozaki, K; Takaya, H; Nakamura, M
1st International Lignin Symposium, Sapporo. 2019.9.13-15, Sep. 2019

セルラーゼ糖質結合モジュールに対するリグニンモデル吸着部位の解析
德永有希; 永田崇; 近藤敬子; 片平正人; 渡辺隆司
第33回セルラーゼ研究会, 佐久平プラザ（長野）, 2019.8.20-21, Aug. 2019

Disruption of the Alzheimer’s disease-related complex between prion and amyloid β by an anti-prion aptamer
T. Mashima; Y. M. Iida; Yamaoki; M. So; T. Nagata; M. Katahira
Commemorative International Symposium of the Japan Society of Nucleic Acids Chemistry (CISNAC) 2019, Konan University, 2019.07.22-24, Jul. 2019

In-cell NMR analysis for structure and dynamics of nucleic acids introduced inside the living human cells
Y. Yamaoki; T. Nagata; A. Kiyoishi; M. Miyake; L. Kuan-Heng; S. Takami; F. Kano; M. Murata; M. Katahira
第21回日本RNA学会年会, 東京大学, 2019.07.17-19, Jul. 2019

Development and structural determination of an RNA aptamer that blocks conformational conversion of prion protein
Tsukasa Mashima; Joon-Hwa Lee; Yuji O. Kamatari; Tomohiko Hayashi; Takashi Nagata; Fumiko Nishikawa; Satoshi Nishikawa; Masahiro Kinoshita; Kazuo Kuwata; Masato Katahira
第21回日本RNA学会年会, 東京大学, 2019.07.17-19, Jul. 2019

An insight into the target search and HIV Vif-dependent inactivation of APOBEC3F and APOBEC3G elucidated by tracking the deamination events
Kamba K; Wan L; Nagata T; Katahira M
8th Asia-Pacific NMR Symposium, Nanyang Technol Univ (Singapore), 2019.07.03-06, Jul. 2019, Peer-reviewed

The deamination rates of APOBEC3F and APOBEC3G are affected by their concentrations and that of DNAs, as well as the length of the DNAs
Kamba K; Wan L; Nagata T; Katahira M
第19回日本蛋白質科学会年会第71回日本細胞生物学会大会合同年次大会, 神戸国際会議場, 2019.06.24-26, Jun. 2019

白色腐朽菌Pleurotus eryngii由来のリグニン・多糖複合体分解酵素グルクロノイルエステラーゼの発現・精製・活性検証と各種添加剤の活性への影響に関する速度論解析
坂井勇太; 林孟宜; 檜山明穂; 近藤敬子; 永田崇; 片平正人
第69回日本木材学会大会, 函館アリーナ(北海道) 2019.3.14-16, Mar. 2019

13Cラベル化リグニンオリゴマーモデルを用いたセルラーゼ糖質結合モジュールとの相互作用解析
徳永有希; 永田崇; 近藤敬子; 片平正人; 渡辺隆司
第69回日本木材学会大会, 函館アリーナ(北海道) 2019.3.14-16, Mar. 2019

選択的白色菌Ceriporiopsis subvermispora由来lytic polysaccharide monooxygenase (LPMO) の反応性の解析
井関優侑; 大城理志; 永田崇; 近藤敬子; 片平正人; 渡辺隆司
第385回生存圏シンポジウム 2018.11.26京都大学(宇治市), Nov. 2018

NMR化学シフト摂動法を用いたセルラーゼ糖質結合モジュールとリグニン間相互作用の解析
徳永有希; 永田崇; 近藤敬子; 片平正人; 渡辺隆司
第385回生存圏シンポジウム 2018.11.26京都大学(宇治市), Nov. 2018

Development of RNA Aptamer That Has High Anti-prion Activity and Its Structural Basis
Mashima, M; Joon-Hwa, L; Kamatari, Y. O; Hayashi, T; Nishikawa, F; Nagata, T; Nishikawa, S; Kinoshita, M; Kuwata, K; Katahira, M
Japan Society of Nucleic Acids Chemistry, Nov. 2018

In-cell NMR studies on structure and dynamics of DNA and RNA introduced inside the living human cells
Yamaoki Y; Nagata T; Kiyoishi A; Miyake M; Lin K; Takami S; Kano F; Murata M; Katahira M
ISNAC2018, Kyoto Univ (Kyoto), 2018.11.7-9, Nov. 2018

NMR法によるリグニン-セルラーゼ糖質結合モジュール間吸着の解析
徳永有希; 永田崇; 近藤敬子; 片平正人; 渡辺隆司
第63回リグニン討論会, 東京農工大学（東京）2018.11.1-2, Nov. 2018

Classification of a lignin-carbohydrate complex (LCC) degradation enzymes, fungal glucuronoyl esterases (FGEs), and expression/ characterization of two new FGEs of white rot fungi
Lin MI; Hiyama A; Kondo K; Y Sakai; Nagata T; Katahira M
第63回リグニン討論会, 東京農工大学（東京）2018.11.1-2, Nov. 2018

In-cell NMR analysis for structure and dynamics of nucleic acids introduced inside the living human cells
Yamaoki Y; Nagata T; Kiyoishi Y; Miyake M; Kuan-Heng L; Takami S; Kano F; Murata M; Katahira M
第41回日本分子生物学会年会, パシフィコ横浜(横浜)2018.11.28-30, Nov. 2018

HIV Vif– human E3 ubiquitin ligase complex directly inhibits the enzymatic activity of APOBEC3G
Kamba K; Wang N; Unzai S; Morishita R; Nagata T; Katahira M
第41回日本分子生物学会年会, パシフィコ横浜(横浜)2018.11.28-30, Nov. 2018

Selection of 2’F-modified aptamers against Vif - CBFβ - CUL 5 - ELOB - ELOC complex
Sekikawa Y; Mizusawa K; Kamba K; Suzuki T; Wan L; Katahira M; Nagata T; Sakamoto T
第41回日本分子生物学会年会, パシフィコ横浜(横浜)2018.11.28-30, Nov. 2018

Selection and characterization of aptamers against Vif - CBFβ - CUL 5 - ELOB - ELOC complex
鈴木拓也; 万里; 関川湧斗; 田中陽一郎; 神庭圭介; 片平正人; 永田崇; 坂本泰一
第41回日本分子生物学会年会, パシフィコ横浜(横浜)2018.11.28-30, Nov. 2018

中分子アゴニスト創薬のロジカルデザイン
高折晃史; 北脇年雄; 永田崇
第２回モダリティ創薬デザイン研究会, グランフロント大阪(大阪) 2018.11.26, Nov. 2018

Fractionation and analysis of lignin-carbohydrate complex in wood cell wall
Saho Kashima; Hiroshi Nishimura; Shizuka Sakon; Misato Yamada; Yukari Ohta; Keiko Kondo; Yudai Yamaoki; Takashi Nagata; Masato Katahira; Takashi Watanabe
The 3rd Asia Research Node Symposium on Humanosphere Science, NCHU, Taiwan, 20180926: P19, Sep. 2018

Fractionation and structural analysis of enzyme-treated lignin-carbohydrate complexes
Hiroshi Nishimura; Shizuka Sakon; Misato Yamada; Kazuma Nagata; Takashi Nagata; Masato Katahira; Yukari Ohta; Takashi Watanabe
lignobiotech 2018, p17, 5th Symposium of Biotechnology Applied to Lignocelluloses, Helsinki, 01 Sep. 2018

An RNA aptamer disrupts the interaction of prion protein with Amyloid β
Iida M; Mashima T; Yamaoki Y; So M; Nagata T; Katahira M
The 56th Annual Meeting of the Biophysical Society of Japan, Okayama Univ (Okayama), 2018.9.15-17, Sep. 2018

Real-Time NMR Analysis of the Continuous Degradation Process of Azo Dyes using Azoreductase in Cooperation with the NADPH Regeneration System
Horiuchi M; Nagata T; Katahira M; Kobashigawa Y; Suzuki Y; Ochiai M
The 9th International Symposium of Advanced Energy Science, Kyoto Univ., Uji, 2018.9.3-5, Sep. 2018

Development of Lignocellulose Degrading Saccharomyces Cerviciae via Cell-Surface Display of Lytic Polysaccharide Monooxygenase
Mousa MOM; Kondo K; Khattab S; Nagata T; Abdul-Raouf UM; Watanabe T; Katahira M
The 9th International Symposium of Advanced Energy Science, Kyoto Univ., Uji, 2018.9.3-5, Sep. 2018

Development of Functional Peptides that Bind to RNA
Watanabe N; Kinase T; Nomura Y; Nagata T; Katahira M; Sakamoto T
The 9th International Symposium of Advanced Energy Science, Kyoto Univ., Uji, 2018.9.3-5, Sep. 2018

Interaction Analysis Between Cellulase Carbohydrate-Binding Module and Lignin by Ultra-High Sensitivity NMR for Biorefinery
Watanabe T; Tokunaga T; Ohshiro S; Nishimura H; Kishimoto T; Nakamura M; Kondo T; Nagata T; Katahira M
The 9th International Symposium of Advanced Energy Science, Kyoto Univ., Uji, 2018.9.3-5, Sep. 2018

Hopping Conduction in A Hydronium Solvate Ionic Liquid
Kitada A; Fukami K; Saimura M; Nagata T; Katahira M
The 9th International Symposium of Advanced Energy Science, Kyoto Univ., Uji, 2018.9.3-5, Sep. 2018

Characteristics of the C-terminal domain of anti-viral factor APOBEC3G: mechanism behind a target search and inhibition by HIV-1 Vif protein
Kamba K; Nagata T; Katahira M
XXVIII International Conference on Magnetic Resonance in Biological Systems, Univ Col Dublin (Ireland), 2018.8.19-24, Sep. 2018

NMR analysis of Non-productive Binding of Carbohydrate Binding Module of Cellobiohydrolase with Lignin
Tokunaga T; Nagata T; Kondo K; Katahira M; Watanabe T
The 3rd Asia Research Node Symposium on Humanosphere Science, National Chung Hsing University (Taiwan) 2018.9.25-27, Sep. 2018

Physical origin of the large difference between MDM2-p53NTD and -MIP complexes in binding free energy
Yamada T; Hayashi T; Kobayashi N; Yanagawa H; Katahira M; Nagata T; Kinoshita M
The 56th Annual Meeting of The Biophysical Society of Japan, Sep. 2018

Deep-MagRO: 深層学習を応用した高速かつ高精度な統合的NMR解析システム
小林直宏; 杉木俊彦; 永田崇; 古賀信康; Peter Güntert; 児嶋長次郎; 藤原敏道
第57回NMR討論会札幌コンベンションセンター（札幌市）, 2018.9.18-20, Sep. 2018

In-cell NMR studies on structure and dynamics of DNA and RNA introduced inside the living human cells
Yamaoki Y; Nagata T; Kiyoishi Y; Miyake M; Kano F; Murata M; Katahira M
第57回NMR討論会札幌コンベンションセンター（札幌市）, 2018.9.18-20, Sep. 2018

抗プリオン活性を有する四重鎖RNAの構造解析
真嶋司; Lee Joon-Hwa; 林智彦; 西川富美子; 鎌足雄司; 永田崇; 西川諭; 桑田一夫; 木下正弘; 片平正人
第57回NMR討論会札幌コンベンションセンター（札幌市）, 2018.9.18-20, Sep. 2018

Approaches for valorization of lignovelluloses using microwave technology and lignin-binding catalysts
Takashi Watanabe; Chen Qu; Satoshi Oshiro; Hiroshi Nishimura; Keiichiro Kashimura; Takashi Nagata; Masato Katahira; Katsuhiro Isozaki; Hikaru Takaya; Masaharu Nakamura
lignobiotech 2018, p21, 5th Symposium of Biotechnology Applied to Lignocelluloses, Helsinki, 31 Aug. 2018

Observation of imino proton signals of DNA and RNA introduced inside the living human cells by using in-cell NMR spectroscopy
Yamaoki Y; Nagata T; Kiyoishi Y; Miyake M; Kano F; Murata M; Katahira M
XXVIII International Conference on Magnetic Resonance in Biological Systems, Univ Col Dublin (Ireland), 2018.8.19-24, Aug. 2018

Structural and theoretical insights into the RNA-recognition mechanism by Musashi-1
Nagata T; Iwaoka R; Hayashi T; Tsuda K; Kobayashi N; Kinoshita M; Katahira M
XXVIII International Conference on Magnetic Resonance in Biological Systems, Univ Col Dublin (Ireland), 2018.8.19-24, Aug. 2018

Application of Deep Neural Networks for Highly Accurate NMR Structure Analysis by Deep-MagRO
Kobayashi N; Sugiki T; Hattori Y; Nagata T; Shinya S; Wurz JM; Koga R; Koga N; Guntert P; Kojima C; Fujiwara T
XXVIII International Conference on Magnetic Resonance in Biological Systems, Univ Col Dublin (Ireland), 2018.8.19-24, Aug. 2018

白色腐朽菌Ceriporiopsis subvermispora由来lytic polysaccharide monooxygenase (LPMO) の反応性の解析
井関優侑; 大城理志; 永田崇; 近藤敬子; 片平正人; 渡辺隆司
第32回セルラーゼ研究会, 佐久平プラザ（長野）, 2018.7.13-14, Jul. 2018

Trichoderma reesei由来Cel7AのCBM1がリグニンに吸着するメカニズムの解析
徳永有希; 永田崇; 近藤敬子; 片平正人; 渡辺隆司
第32回セルラーゼ研究会, 佐久平プラザ（長野）, 2018.7.13-14, Jul. 2018, Invited

Inhibition of the interaction of prion protein with Amyloid β by an anti-prion aptamer
飯田真美子; 真嶋司; 山置佑大; 宗正智; 永田崇; 片平正人
第20回日本RNA学会年会2018.7.9-11ホテルコスモスクエア国際交流センター(大阪), Jul. 2018

Interaction between HIV-1 RRE RNA and artificial peptides
Nomura Y; Watanabe N; Kinase T; Nagata T; Katahira M; Harada K; Sakamoto T
第20回日本RNA学会年会2018.7.9-11ホテルコスモスクエア国際交流センター(大阪), Jul. 2018

Selection and characterization of aptamers against Vif - CBFβ - CUL 5 - ELOB - ELOC complex
鈴木拓也; 万里; 関川湧斗; 田中陽一郎; 神庭圭介; 片平正人; 永田崇; 坂本泰一
平成30年度日本生化学会関東支部例会, 埼玉大学(埼玉), 2018.6.23, Jun. 2018

Interaction of HIV Vif-E3 ubiquitin ligase complex with nucleic acid
K. Kamba; T. Nagata; M. Katahira
18th Annual Meeting of the Protein Science Society of Japan 2018.06.26-28, Tokimess (Niigata), Jun. 2018

Detection of different conformational changes of Translocated in liposarcoma, TLS, upon its binding to various nucleic acids
Nesreen Hamad; Tsukasa Mashima; Yudai Yamaoki; Hiroki Watanabe; Takayuki Uchihashi; Riki Kurokawa; Takashi Nagata; Masato Katahira
18th Annual Meeting of the Protein Science Society of Japan 2018.06.26-28, Tokimess (Niigata), Jun. 2018

セルラーゼ糖質結合モジュールとリグニン間相互作用部位のNMRによる解析
徳永有希; 大城理志; 永田崇; 近藤敬子; 西村裕志; 片平正人; 渡辺隆司
第68回日本木材学会, 京都大学(京都), 2018.3.14-16, Mar. 2018

NADPH再生系を伴ったアゾレダクターゼによるアゾ染料分解反応のNMR解析
堀内正隆; 永田崇; 片平正人; 小橋川敬博; 鈴木定彦; 落合正則
日本分子生物学会年会プログラム・要旨集(Web), 2018

Modeling of the tandem RNA-binding domains of a neural and oncogenic protein, Musashi1, engaging the minimum target RNA
Ryo Iwaoka; Takashi Nagata; Kengo Tsuda; Takao Imai; Hideyuki Okano; Naohiro Kobayashi; Masato Katahira
ConBio2017, 神戸ポートアイランド(神戸)2017.12.6-9, Dec. 2017

The effect of different target nucleic acids on the structural change of TLS
Nesreen Hamad; Tsukasa Mashima; Hiroki Watanabe; Takayuki Uchihashi; Riki Kurokawa; Takashi Nagata; Masato Katahira
ConBio2017, 神戸ポートアイランド(神戸)2017.12.6-9, Dec. 2017

Interaction between non-coding RNA and TLS/FUS protein, and structural change
Mashima, T; Nagata, T; Hamad, N; Ozawa, S; Yamaoki, Y; Kondo, K; Watanabe, H; Yoneda, R; Uchihashi, T; Kurokawa, R; Katahira, M
The 44th International Symposium on Nucleic Acids Chemistry, Nov. 2017

Binding analysis of tandem dimer of lignin-binding peptide and design of artificial enzyme carrying the peptide for enhanced lignin degradation
Satoshi Oshiro; Asako Yamaguchi; Hiroshi Nishimura; Takashi Nagata; Masato Katahira; Takashi Watanabe
HSS2017 and 7th ISSH meeting, Bogor, Indonesia (oral), Nov. 2017

Studies on lytic polysaccharide monooxygenase (LPMO) from the selective white rot fungus, Ceriporiposis subvermispora
Yuu Iseki; Satoshi Oshiro; Takashi Nagata; Keiko Kondo; Hiroshi Nishimura; Masato Katahira; Takashi Watanabe
Humanosphere Science School 2017, Salak Tower (Bogor, Indonesia), 2017.11.1-2, Nov. 2017

Analysis of Adsorption Mechanism between Carbohydrate Binding Module of Cellulase and Lignin by NMR
Yuki Tokunaga; Satoshi Oshiro; Takashi Nagata; Keiko Kondo; Hiroshi Nishimura; Masato Katahira; Takashi Watanabe
Humanosphere Science School 2017, Salak Tower (Bogor, Indonesia), 2017.11.1-2, Nov. 2017

Analysis of Lignin-Carbohydrate Complexes in Woody Biomass by Using NMR
Shizuka Sakon; Hiroshi Nishimura; Misato Yamada; Yukari Ohta; Keiko Kondo; Yudai Yamaoki; Takashi Nagata; Masato Katahira; Takashi Watanabe
Humanosphere Science School 2017, Salak Tower (Bogor, Indonesia), 2017.11.1-2, Nov. 2017

Interactions between eukaryotic initiation factors implicated during ribosomal scanning and start codon recognition
Takashi Nagata; Hisashi Yoshida; Satoru Unzai; Takeshi Urano; Katsura Asano; Eiji Obayashi
The 56th Annual Meeting of the NMR Society of Japan, Tokyo Metropolitan Univ., Hachioji, 2017.11.14-16, Nov. 2017

Observation of in-cell NMR signals of DNA and RNA in living human cells
Yudai Yamaoki; Ayaka Kiyoishi; Masayuki Miyake; Fumi Kano; Masayuki Murata; Takashi Nagata; Masato Katahira
The 56th Annual Meeting of the NMR Society of Japan, Tokyo Metropolitan Univ., Hachioji, 2017.11.14-16, Nov. 2017

A robust approach for highly automated NMR structure analysis assisted by deep neural networks
Naohiro Kobayashi; Takashi Nagata; Yoshikazu Hattori; Shoko Shinya; Julia M. Würz; Peter Güntert; Chojiro Kojima; Toshimichi Fujiwara
The 56th Annual Meeting of the NMR Society of Japan, Tokyo Metropolitan Univ., Hachioji, 2017.11.14-16, Nov. 2017

Structural determination of Musashi1 RBD2:r(GUAGU) and structural insight of target RNA selection mechanisms
Ryo Iwaoka; Takashi Nagata; Kengo Tsuda; Takao Imai; Hideyuki Okano; Naohiro Kobayashi; Masato Katahira
The 56th Annual Meeting of the NMR Society of Japan, Tokyo Metropolitan Univ., Hachioji, 2017.11.14-16, Nov. 2017

Characterization of the cytidine deamination properties of human APOBEC3B by real-time NMR, which are quite different from those of APOBEC3G
Li Wan; Takashi Nagata; Ryo Morishita; Akifumi Takaori-Kondo; Masato Katahira
The 44th International Symposium on Nucleic Acids Chemistry, The 1st Annual Meeting of Japan Society of Nucleic Acids Chemistry, Tokyo University of Science (Tokyo), 2017.11.14-16, Nov. 2017

Sphingombium sp. YG1由来guaiacylglycerol-β-guaiacyl ether - Cα位酸化酵素の酵素学的解析と利用
前田亜鈴悠; 宋晶; 西真郎; 黒澤佳奈子; 市川淳子; 塩谷美夏; 山置佑大; 永田崇; 片平正人; 山田美紗登; 西村裕志; 渡辺隆司; 大田ゆかり
第62回リグニン討論会、名古屋大学, poster, Oct. 2017

Analysis of peroxidase activity, lignin model degradation of heterologous expressed soluble fungal ligninolytic enzymes
Meng-I Lin; Keiko Kondo; Takashi Nagata; Masato Katahira
2017 Taiwan-Japan Biomedical Symposium on Magnetic Resonance, National Cheng Kung University (Tainan), 2017.10.15-17, Oct. 2017

Enzymatic characterization and application of guaiacylglycerol-β-guaiacyl ether – Cα-dehydrogenases from Sphingobium sp. YG1
Allyn H. Maeda; Jing Song; Shinro Nishi; Kanako Kurosawa; Junko Ichikawa; Mika Shioya; Yudai Yamaoki; Takashi Nagata; Masato Katahira; Misato Yamada; Hiroshi Nishimura; Takashi Watanabe; Yukari Ohta
第62回リグニン討論会, 名古屋大学（名古屋）2017.10.26-27, Oct. 2017

フラグメント分子軌道法を活用したリグニンβ-O-4還元開裂酵素の機能改変
嶋根康弘; 黒澤佳奈子; 市川淳子; 前田亜鈴悠; 布浦拓郎; 山置佑大; 永田崇; 片平正人; 高谷光; 吉田亮太; 中村正治; 渡辺隆司; 大田ゆかり
第62回リグニン討論会, 名古屋大学（名古屋）2017.10.26-27, Oct. 2017

Kinetic studies of the two fungal glutathione-dependent enzymes and their potential roles in the intracellular detoxification and wood-derived compound metabolism
Wan Hasnidah; Wan Osman; Meng-I Lin; Keiko Kondo; Takashi Nagata; Masato Katahira
The 62nd Lignin Symposium in Nagoya, 2017.10.26-27, Oct. 2017

Structural analysis of lignocellulosic biomass by solution-state NMR for future biorefinery
Takashi Watanabe; Hiroshi Nishimura; Chen Qu; Misato Yamada; Shizuka Sakon; Takao Kishimoto; Masaharu Nakamura; Keiko Kondo; Takashi Nagata; Makoto Katahira
The 8th International Symposium of Advanced Energy Science - Interdisciplinary Approach to Zero Emission Energy (poster), Sep. 2017

Development of the artificial multi-domain enzymes immobilized on the curdlan sheet at low cost.
Masataka Horiuchi; Takashi Nagata; Masato Katahira; Yoshihiro Kobashigawa; Yasuhiko Suzuki; Masanori Ochiai
The 8th International Symposium of Advanced Energy Science, Kyoto Univ., Uji, 2017.9.5-6, Sep. 2017

Structure-function relationship of Epstein-Barr Virus EBNA3C NLS and transport receptor
Go Matsuda; Takashi Nagata; Masato Katahira; Ken-ichi Imadome
The 8th International Symposium of Advanced Energy Science, Kyoto Univ., Uji, 2017.9.5-6, Sep. 2017

NMR studies for the complex of TLS/FUS protein and G-quadruplexes of telomeric DNA and TERRA, which induces telomere shortening
Keiko Kondo; Tsukasa Mashima; Takanori Oyoshi; Riki Kurokawa; Naohiro Kobayashi; Takashi Nagata; Masato Katahira
55th Annual Meeting of the Biophysical Society of Japan, Kumamoto Univ., Kumamoto, 2017.9.19-21., Sep. 2017

Influences of length and concentration of the DNA substrate, as well as the location of the target sequence, on deamination by APOBEC3F
Li Wan; Takashi Nagata; Masato Katahira
55th Annual Meeting of the Biophysical Society of Japan, Kumamoto Univ., Kumamoto, 2017.9.19-21., Sep. 2017

An anti-prion aptamer inhibits the formation of prion protein-amyloid β oligomer complex that is related to Alzheimer's disease
Mamiko IIDA; Tsukasa MASHIMA; Yudai YAMAOKI; Takashi NAGATA; Masato KATAHIRA
55th Annual Meeting of the Biophysical Society of Japan, Kumamoto Univ., Kumamoto, 2017.9.19-21., Sep. 2017

18-crown-6を用いるヒドロニウム溶媒和イオン液体の基礎物性
北田敦; 竹岡駿; 近都康平; 深見一弘; 才村正幸; 永田崇; 片平正人; 邑瀬邦明
2017年電気化学会秋季大会 2017.9.10-11、長崎大学文教地区キャンパス, Sep. 2017

Development of RNA binding peptides based on tertiary structural information
Natsuki Watanabe; Tomoaki Kinase; Takashi Nagata; Masato Katahira; Kazuo Harada; Taiichi Sakamoto
The 8th International Symposium of Advanced Energy Science, Kyoto Univ., Uji, 2017.9.5-6, Sep. 2017

Structural study for the recognition of non-coding RNA by TLS/FUS
Tsukasa Mashima; Shunsuke Ozawa; Nesreen Hamad; Ryoma Yoneda; Riki Kurokawa; Takashi Nagata; Masato Katahira
第19回日本RNA学会年会2017.7.19-21富山国際会議場(富山), Jul. 2017

NMR法によるセルラーゼ糖質結合モジュール-リグニン間相互作用の解明
徳永有希; 大城理志; 永田崇; 近藤敬子; 西村裕志; 片平正人; 渡辺隆司
第３１回セルラーゼ研究会長野 2017.7.7-8, Jul. 2017

Conformational change detection of translocated in liposarcoma, TLS, upon binding to various RNAs
Nesreen Hamad; Tsukasa Mashima; Yudai Yamaoki; Keiko Kondo; Takashi Nagata; Masato Katahira
第19回日本RNA学会年会富山国際会議場.2017.7.19-21, Jul. 2017

NMR Analysis of Interaction Mechanism between Carbohydrate Binding Module of Cellulase and Lignin
Yuki Tokunaga; Satoshi Oshiro; Keiko Kondo; Takashi Nagata; Hiroshi Nishimura; Masato Katahira; Takashi Watanabe
The 2nd Asia Research Node Symposium on Humanosphere Science.2017.7.19-21.Kyoto Univ. (Uji), Jul. 2017

HIV-1 RRE由来のRNA断片と人工ペプチドの相互作用の解析
渡邊なつき; 木名瀬智章; 永田崇; 片平正人; 原田和雄; 坂本泰一
平成29年度日本生化学会関東支部例会, 東京医科歯科(東京), 2017.6.17, Jun. 2017

Study of RNA-recognition by TLS/FUS and its conformational change via binding
T. Mashima; S. Ozawa; N. Hamad; R. Yoneda; R. Kurokawa; T. Nagata; M. Katahira
第17回日本蛋白質科学会年会 2017.6.20-22、仙台国際センター(仙台), Jun. 2017

Highly automated NMR signal assignments using peak-noise recognition assisted by Deep Neural Networks
Kobayashi, N; Nagata, T; Kojima, C; Fujiwara, T
Gordon Research Conference. Computational Aspects-Biomol NMR.2017.6.11-16.Grand Summit Hotel Sunday River.(Newy,ME,USA), Jun. 2017

High yield production, activity analysis, and homologous modeling of soluble fungal peroxidases expressed in E. coli
Meng-I Lin; Keiko Kondo; Takashi Nagata; Masato Katahira
17th Annual Meeting of the Protein Science Society of Japan, Jun. 2017

Intersegmental transfer of APOBEC3G was monitored by real-time NMR method
Kamba K; Nagata T; Katahira M
17th Annual Meeting of the Protein Science Society of Japan, Jun. 2017

Invention of RNA aptamer and ribozyme whose activities switch on in response to K+ via G-quadruples formation
Yamaoki, Y; Mashima, T; Nagata, T; Katahira, M
6th International Meeting on Quadruplex Nucleic Acids, May 2017

リグノセルロースの糖－リグニン複合体とその酵素反応の解析
西村裕志; 左近静香; Jenny Arnling Baath; Amanda Ristinmaa; Johanna Nilsson; Gunnar Westman; Lisbeth Olsson; 永田一真; 永田崇; 片平正人; 渡辺隆司
第67回日本木材学会大会、九州大学（福岡市）、2017.3.17-19, Mar. 2017

安定同位体標識法を用いたセルラーゼ糖質結合モジュールとリグニン間相互作用のNMRによる解析
徳永有希; 大城理志; 永田崇; 近藤敬子; 西村裕志; 片平正人; 渡辺隆司
第67回日本木材学会大会、九州大学（福岡市）、2017.3.17-19, Mar. 2017

Characterization of Glutathione-Dependent Enzymes from White Rot Fungi
Wan Hasnidah; Wan Osman; Meng-I Lin; Keiko Kondo; Takashi Nagata; Masato Katahira
The 2017 Annual Meeting of The Japan Society for Biosci, Biotechnol and Agrochem、ウェスティン都ホテル京都（京都市）、2017.3.17-20, Mar. 2017

Heterologous expression of the ligninolytic enzymes from wood rotting fungi and analysis of peroxidase activity, lignin model degradation, and homologous modeling
Meng-I Lin; Keiko Kondo; Takashi Nagata; Masato Katahira
The 2017 Annual Meeting of The Japan Society for Biosci, Biotechnol and Agrochem、ウェスティン都ホテル京都（京都市）2017.3.17-20, Mar. 2017

Characterization of the deamination activity of APOBEC3B by real-time NMR, which is distinct from that of APOBEC3G
Li Wan; Takashi Nagata; Ryo Morishita; Akifumi Takaori-Kondo; Masato Katahira
7th Asia-Pacific NMR Symposium, Indian Institute of Science (Bangalore), 2017.02.16-19, Feb. 2017

Sliding and intersegmental transfer along DNA enhance the enzymatic activity of APOBEC3G as revealed by real-time NMR monitoring methods
Keisuke Kamba; Takashi Nagata; Masato Katahira
7th Asia-Pacific NMR Symposium, Indian Institute of Science (Bangalore), 2017.02.16-19, Feb. 2017

木質バイオマス中の糖－リグニン複合体の解析と酵素による分解
左近静香; 西村裕志; Arnling Baath Jenny; Ristinmaa Amanda; Nilsson Johanna; Westman Gunnar; Olsson Lisbeth; 永田一真; 永田崇; 片平正人; 渡辺隆司
第330回生存圏シンポジウム第13回持続的生存圏創成のためのエネルギー循環シンポジウム—マイクロ波高度利用と先端分析化学—, poster, 2017.1.10, Jan. 2017

NMR study for the recognition of non-coding RNA and DNA by TLS/FUS, a key regulator of the transcriptional repression by cyclin D1 and telomere
K. Kondo; T. Mashima; T. Oyoshi; R. Yoneda; R. Kurokawa; T. Nagata; M. Katahira
International Symposium for NMR of Nucleic Acids,Gyeongsang National Univ. (Korea),2017.1.17, Jan. 2017

Development of K+-responsive RNA aptamer and ribozyme, and in-cell NMR of nucleic acids in human cells
Y. Yamaoki; A. Kiyoishi; T. Mashima; F. Kano; M. Murata; T. Nagata; M. Katahira
International Symposium for NMR of Nucleic Acids,Gyeongsang National Univ. (Korea),2017.1.17, Jan. 2017

リアルタイムNMRモニタリング法による酵素反応の定量解析及びヒト抗ウイルス因子ＡＰＯＢＥＣ３Ｇの脱アミノ化機構の解明
神庭圭佑; 永田崇; 片平正人
定量生物学の会年会、岡崎コンファレンスセンター（岡崎）、2017.1.8-1.9, Jan. 2017

NMR analysis of interaction of TLS/FUS and non-coding RNA/DNA, a key event for regulation of CCND1 transcription and telomere shortening
Keiko Kondo; Tsukasa Mashima; Takanori Oyoshi; Ryoma Yoneda; Riki Kurokawa; Takashi Nagata; Masato Katahira
第55回NMR討論会広島国際会議場, 広島国際会議（広島市）,2016.11.16-18, Nov. 2016

Supramolecular structure and stereoselective enzymatic reaction of wood biomass, and in-cell NMR of nucleic acids
Yudai Yamaoki; Kazuma Nagata; Ayaka Kiyoishi; Hiroshi Nishimura; Fumi Kano; Masayuki Murata; Yukari Ohta; Takashi Watanabe; Takashi Nagata; Masato Katahira
第55回NMR討論会広島国際会議場, 広島国際会議（広島市）,2016.11.16-18, Nov. 2016

深層学習に支援されたNMRシグナルの自動解析
小林直宏; 服部良一; 永田崇; 児嶋長次郎; 藤原敏道
第55回NMR討論会広島国際会議場, 広島国際会議（広島市）,2016.11.16-18, Nov. 2016

Structural basis of RNA-recognition by TLS/FUS which repress cyclin D1 via binding to a non-coding RNA
Tsukasa Mashima; Shunsuke Ozawa; Keiko Kondo; Nesreen Hamad; Ryoma Yoneda; Riki Kurokawa; Takashi Nagata; Masato Katahira
第39回日本分子生物学会年会、パシフィコ横浜（横浜市）、2016.11.30-12.2, Nov. 2016

The effects of prion protein and a RNA molecule that binds to prion protein on Aβ fibrillation
Mamiko IIDA; Tsukasa MASHIMA; Yudai YAMAOKI; Takashi NAGATA; Masato KATAHIRA
第54回日本生物物理学会年会、つくば国際会議場（つくば市）、2016.11.25-27, Nov. 2016

Sliding as well as intersegmental transfer on DNA enhances target search of human anti-viral factor APOBEC3G: Insight by the real-time NMR study
Kamba, K; Nagata, T; Kahitara, M
第54回日本生物物理学会年会、つくば国際会議場（つくば市）、2016.11.25-27, Nov. 2016

Characterization of the deamination activity of APOBEC3B by real-time NMR, which is distinct from that of APOBEC3G
Li Wan; Takashi Nagata; Ryo Morishita; Akifumi Takaori-Kondo; Masato Katahira
第54回日本生物物理学会年会、つくば国際会議場（つくば市）、2016.11.25-27, Nov. 2016

Analysis of β-O-4 cleaving enzyme, GST4, from the marine bacterium, Novosphingobium sp. MBES04
Yasuhiro Shimane; Allyn H Maeda; Mika Shioya; Kanako Kurosawa; Jyunko Ichikawa; Takuro Nunoura; Yudai Yamaoki; Takashi Nagata; Masato Katahira; Hikaru Takaya; Ryota Yoshida; Masaharu Nakamura; Takashi Watanabe; Yukari Ohta
第61回リグニン討論会、京都大学（宇治市）、2016.10.27-28, Oct. 2016

Heterologous expression and structure-activity relationship analysis of the oxidative enzymes from wood rotting fungi that are involved in lignocellulose degradation
Meng-I Lin; Keiko Kondo; Takashi Nagata; Masato Katahira
第61回リグニン討論会、京都大学（宇治市）、2016.10.27-28, Oct. 2016

Analysis of interaction between lignin and peptides for lignocellulosic biorefinery
Asako Yamaguchi; Takashi Suetomi; Satoshi Oshiro; Yuki Tokunaga; Hiroshi Nishimura; Takashi Nagata; Tsukasa Mashima; Masato Katahira; Katsuhiro Isozaki; Masaharu Nakamura; Takashi Watanabe
第61回リグニン討論会、京都大学（宇治市）、2016.10.27-28, Oct. 2016

Investigation of the interactions between eukaryotic initiation factors implicated during ribosomal scanning and start codon recognition
NAGATA Takashi
The 42nd Naito Conference on “In the Vanguard of Structural Biology: Revolutionizing Life Sciences” CHÂTERAISÉ Gateaux Kingdom SAPPORO, Sapporo, 2016.10.4-7, Oct. 2016, Peer-reviewed

Integrating strategy for production of bioethanol and lignin derivatives from rice straw
Khattab, S; Kondo, K; Lin, M. I; Mashima, T; Nagata, T; Katahira, M
The 7th International Symposium of Advanced Energy Science -Frontier of Zero Emission Energy-, Sep. 2016

Low-cost degradation of azo dyes using the GRP-tagged azoreductase combined with NADPH regeneration enzymes immobilized on the curdlan sheet
Masataka Horiuchi; Yasuhiko Suzuki; Masanori Ochiai; Takashi Nagata; Masato Katahira
The 7th International Symposium of Advanced Energy Science.Uji, Sep. 2016

Development of artificial RNA and artificial peptide to control gene expression by using NMR
Yumi Takeda; Takashi Nagata; Ryo Amano; Yusuke Nomura; Kazuo Harada; Colin A. Smith; Masato Katahira; Taiichi Sakamoto
The 7th International Symposium of Advanced Energy Science.Uji, Sep. 2016

Non-coding RNA/DNA recognition by TLS/FUS that causes repression of cyclin D1 transcription and telomere elongation
Kondo, K; Mashima, T; Oyoshi, T; Yoneda, R; Kurokawa, R; Nagata, T; Katahira, M
The 43rd International Symposium on Nucleic Acids Chemistry, Kumamoto Univ., Kumamoto, 2016.9.27-29, Sep. 2016

Invention of K+-responsive Tat-binding RNA aptamer and hammerhead ribozyme, and in-cell NMR of nucleic acids
Yudai Yamaoki; Ayaka Kiyoishi; Tsukasa Mashima; Fumi Kano; Masayuki Murata; Takashi Nagata; Masato Katahira
The 43rd International Symposium on Nucleic Acids Chemistry, Kumamoto Univ., Kumamoto, 2016.9.27-29, Sep. 2016

カリウムイオン応答性Tat結合RNAアプタマーおよびハンマーヘッドリボザイムの創製およびin-cell NMR法による細胞内核酸の観測
山置佑大; 清石彩華; 真嶋司; 加納ふみ; 村田昌之; 永田崇; 片平正人
第10回バイオ関連化学シンポジウム、第31回生体機能関連化学シンポジウム、第19回バイオテクノロジー部会シンポジウム、石川県立音楽堂（金沢市）、2016.9.7-9.9, Sep. 2016

NMR studies of non-coding RNA and DNA recognition by TLS/FUS which induces transcriptional repression of cyclin D1 and telomere shortenin
Kondo, K; Mashima, T; Oyoshi, T; Yoneda, R; Kurokawa, R; Nagata, T; Katahira, M
The XXVIIth International Conference on Magnetic Resonance in Biological Systems, Aug. 2016

Deamination mechanism coupled with sliding along single-stranded DNA of anti-HIV factor APOBEC3G as investigated by real-time NMR spectroscopy
Kamba, K; Nagata, T; Katahira M
The XXVIIth International Conference on Magnetic Resonance in Biological Systems, Aug. 2016

Accurate and molecular-size-tolerant NMR quantitation of diverse compounds, and real-time monitoring of enzymatic reaction
Okamura, H; Kamba, K; Nishimura, H; Kigawa, T; Watanabe, T; Nagata, T; Katahira, M
The XXVIIth International Conference on Magnetic Resonance in Biological Systems, Kyoto International Conference Center、2016.21-26, Aug. 2016

K+-responsive Activation of Ribozyme System via Structural Transition from Duplex to Dual-quadruplex Requiring no Heating and Cooling Treatment
Yudai Yamaoki; Takashi Nagata; Tsukasa Mashima; Masato Katahira
The XXVIIth International Conference on Magnetic Resonance in Biological Systems, Kyoto International Conference Center、2016.21-26, Aug. 2016

Analysis of molecular interaction of peptides with lignin for lignocellulosic biorefinery
Watanabe, T; Yamaguchi, A; Oshiro, S; Suetomi, T; Nishimura, H; Nagata, T; Mashima, T; Katahira, M; Isozaki, K; Takaya, H; Nakamura, M
4th Symposium on Biotechnology applied to Lignocelluloses. CSIC downtown Campus (Madrid), 2016.6.19-22, Jun. 2016

ヒト抗HIV因子APOBEC3Gの標的探索及び脱アミノ化には静電相互作用が支配的である
神庭圭佑; 永田崇; 片平正人
新学術領域「柔らかな分子系」第 16 回ワークショップ, Jun. 2016

カリウムイオンを認識して活性をオフからオンへと切り替えるTat結合RNAアプタマーおよびハンマーヘッドリボザイムの開発
山置佑大; 永田崇; 真嶋司; 片平正人
新学術領域「柔らかな分子系」第 16 回ワークショップ, Jun. 2016

NMR analysis of interaction between TLS/FUS and non-coding RNA which causes transcriptional repression of cyclin D1
真嶋司; 小澤駿介; 近藤敬子; 永田崇; 黒川理樹; 片平正人
The 16th Annual Meeting of the Protein Science Society of Japan, Fukuoka, Jun 2016, Jun. 2016

The effects of prion protein and RNA molecule that targets prion protein on Aβ fibrillation
Mamiko IIDA; Tsukasa MASHIMA; Yudai YAMAOKI; Takashi NAGATA; Masato KATAHIRA
The 16th Annual Meeting of the Protein Science Society of Japan, Fukuoka, Jun 2016, Jun. 2016

NMR analysis of the recognition of non-coding RNA and DNA by TLS/FUS which causes transcriptional repression of cyclin D1 and telomere shortening
Tsukasa Mashima; Keiko Kondo; Takanori Oyoshi; Ryoma Yoneda; Riki Kurokawa; Takashi Nagata; Masato Katahira
The RNA Society of Japan 18th Annual Meeting AND The 21st Annual Meeting of the RNA Society, Jun. 2016

Binding properties of high-affinity RNA aptamers against AML1 Runt domain
Ryo Amano; Kenta Takada; Yoichiro Tanaka; Takashi Nagata; Masato Katahira; Yoshikazu Nakamura; Tomoko Kozu; Taiichi Sakamoto
The RNA Society of Japan 18th Annual Meeting AND The 21st Annual Meeting of the RNA Society, Jun. 2016

K+-responsive activation of dual-quadruplex forming ribozyme system requiring no heating and cooling treatment
Yudai Yamaoki; Tsukasa Mashima; Takashi Nagata; Masato Katahira
The RNA Society of Japan 18th Annual Meeting AND The 21st Annual Meeting of the RNA Society, Jun. 2016

Binding properties of RNA aptamer against AML1 Runt domain
R. Amano; K. Takada; T. Nagata; Y. Nomura; J. Fukunaga; Y. Tanaka; M. Katahira; Y. Nakamura; T. Kozu; T. Sakamoto
Aptamer 2016, St Hilda's College, Oxford, UK, 2016.4.4-5, Apr. 2016

Tandem GGA repeat G-quadruplex as an anti-prion protein aptamer and a K+-responsive structural/functional switching device
T. Nagata; T. Mashima; Y. Yamaoki; F. Nishikawa; Y.O. Kamatari; S. Nishikawa; K. Kuwata; M. Katahira
Aptamer 2016, St Hilda's College, Oxford, UK, 2016.4.4-5, Apr. 2016

転写因子AML1のDNA結合部位を標的とする高親和性RNAアプタマーの開発と解析
天野亮; 高田健多; 田中陽一郎; 永田崇; 片平正人; 中村義一; 神津知子; 坂本泰一
第5回日本生物物理学会関東支部会、桐生, Mar. 2016

Binding properties of RNA aptamer that binds to the transcription factor AML1 Runt domain
R. Amano; K. Takada; Y. Tanaka; T. Nagata; M. Katahira; Y. Nakamura; T. Kozu; T. Sakamoto
The 8th Takeda Science Foundation Symposium on PharmaSciences, Osaka, Jan. 2016

NMR study of RNA aptamer that binds to the transcription factor AML1 Runt domain
T. Sakamoto; R. Amano; Y. Nomura; T. Nagata; M. Katahira; J. Fukunaga; Y. Tanaka; Y. Nakamura; T. Kozu
The 8th Takeda Science Foundation Symposium on PharmaSciences, Osaka, Jan. 2016

転写因子AML1 Runt domainを標的とした高親和性RNAアプタマーの特徴
高田健多; 天野亮; 田中陽一郎; 永田崇; 片平正人; 中村義一; 神津知子; 坂本泰一
第38回日本分子生物学会年会、神戸, Dec. 2015

Analysis of the biocharacteristics of APOBEC3F by real-time NMR
Li Wan; Keisuke Kamba; Takashi Nagata; Masato Katahira
第38回日本分子生物学会年会、神戸, Dec. 2015

Heterologous expression and struature-activity relationship analysis of the oxidative enzymes involved in lignosellulose degradatioin from wood rotting fungi
Mengi Lin; Takashi Nagata; Bunzo Mikami; Masato Katahira
第38回日本分子生物学会年会、神戸, Dec. 2015

NMRによる実時間酵素活性アッセイにより抗ウィルス因子APOBEC3Gの脱アミノ化機構を明らかにする
神庭圭佑; 永田崇; 片平正人
第38回日本分子生物学会年会, Dec. 2015

AML1 (RUNX1)タンパク質のRuntドメインとRNAアプタマーの相互作用のNMR解析
天野亮; 高田健多; 田中陽一郎; 永田崇; 片平正人; 野村祐介; 福永淳一; 中村義一; 神津知子; 坂本泰一
日本核酸医薬学会第1回年会、京都, Nov. 2015

海洋性Novosphingubium属細菌に由来するリグニンモデル2量体β-O-4結合開裂酵素群の酵素学的解析
大田ゆかり; 黒澤佳奈子; 永田崇; 片平正人; 西村裕志; 渡辺隆司; 長谷川良一; 秦田勇二
第60回リグニン討論会、つくば, Nov. 2015

リアルタイムNMR法の新たな展開ー抗HIVタンパク質APOBECG3Gの認識ヌクレチド、DNA上のスライディング及びエピジェネクスとの関連に関する新知見ー
神庭圭佑; 永田崇; 片平正人
第54回NMR討論会、千葉, Nov. 2015

転写因子AML1 Runt domainに結合する高親和性RNAアプタマーのNMR解析
高田健太; 天野亮; 田中陽一郎; 永田崇; 片平正人; 中村義一; 神津知子; 坂本泰一
第54回NMR討論会、千葉, Nov. 2015

木質バイオマスの特性を決めるリグニンー多糖結合様式の決定
神谷明宏; 西村裕志; 永田一真; 永田崇; 渡辺隆司; 片平正人
第54回NMR討論会、千葉, Nov. 2015

異常型プリオン蛋白質の産生を抑制する四重鎖核酸の構造解析
真嶋司; 西川富美子; 鎌足雄司; 永田崇; 西川諭; 桑田一夫; 片平正人
第９回バイオ関連化学シンポジウム、熊本, Oct. 2015

カリウムイオンを認識して活性がスイッテングするTat結合RNAアプタマーおよびハンマーヘッドリボザイムの創製
山置佑大; 真嶋司; 永田崇; 片平正人
第９回バイオ関連化学シンポジウム、熊本, Oct. 2015

NMR analysis of lignin-carbohydrate complexes of wood biomass
Akihiro Kamiya; Hiroshi Nishimura; Kazuma Nagata; Takashi Nagata; Takashi Watanabe; Masato Katahira
6th Int. Symp. Adv. Energy Sci., Kyoto, Sep. 2015

Structural analysis of lignin by ultra-high sensitivity NMR for biorefinery
T.Watanabe; H.Nishimura; T.Kishimoto; M.Nakamura; C. Qu; K. Nagata; T.Nagata; M.Katahira
6th Int. Symp. Adv. Energy Sci., poster, Kyoto, Sep. 2015

NMR study of the recognition of non-coding RNA and DNA by TLS/FUS, a key regulator of cyclin D1
Kondo, K; Mashima, T; Oyoshi, T; Kurokawa, R; Nagata, T; Katahira, M
The 42nd International Symposium on Nucleic Acids Chemistry, Himeji, Sep. 2015

Nucleic acid determinants of deamination by human anti-HIV factor, APOBEC3G, as revealed by real-time NMR method
Kamba, K; Nagata, T; Katahira, M
The 42nd International Symposium on Nucleic Acids Chemistry, Himeji, Sep. 2015

Structural and biochemical studies on eIF1 with eIF3c and eIF5; rearrangement of subunit interaction for accurate recognition of AUC start codon
Obayashi, E; Urano, T; Asano, K; Katahira, M; Nagata, T
The 6th International Symposium of Advanced Energy Science～Towards the Realization of Zero-Emission Energy～, Sep. 2015

NMR analyses of RNA-peptide complexes for the development of biomolecules which regulate gene expression
R. Amano; Y. Nomura; T. Nagata; N. Kobayashi; Y. Mori; J. Fukunaga; Y. Tanaka; M. Katahira; Y. Nakamura; T. Kozu; T. Sakamoto
The 6th International Symposium of Advanced Energy Science～Towards the Realization of Zero-Emission Energy～, Sep. 2015

The deamination mechanism of APOEC3G required for effective gene mutation in viral genome
NAGATA Takashi
神庭圭佑、永田崇、片平正人, Sep. 2015

Real-time NMR methods reveals deamination mechanism by human antiviral factor APOBEC3G
Keisuke Kamba; Takashi Nagata; Masato Katahira
6th Asia-Pacific NMR Symposium.Hong Kong, Aug. 2015

New strategy for high-throughput NMR analysis of biomolecules using the NMR database BMRB and tools for automated NMR analysis, MagRO, FLYA and CYANA
Naohiro Kobayashi; Masashi Yokochi; Takeshi Iwata; Bikash Ranjan Sahoo; Takashi Nagata; John L. Markley; Eldon L. Ulrich; Elena Schmidt; Peter Güntert; Chojiro Kojima; Toshimichi Fujiwara
International Society of Magnetic Resonance.Shanghai, Aug. 2015

転写抑制やテロメア短縮を引き起こすTLS/FUSと長鎖非コードRNAおよびDNA間結合の構造基盤
近藤敬子; 真嶋司; 大吉崇文; 黒川理樹; 永田崇; 片平正人
RNA meeting 2015.札幌, Jul. 2015

AML1タンパク質のDNA結合ドメインに対するRNAアプタマーの特性
高田健多; 天野亮; 田中陽一郎; 永田崇; 片平正人; 中村義一; 神津知子; 坂本泰一
RNA meeting 2015.札幌, Jul. 2015

AML1 タンパク質の Runt ドメインに結合する RNA アプタマーの取得と解析
高田健多; 天野亮; 田中陽一郎; 永田崇; 片平正人; 中村義一; 神津知子; 坂本泰一
平成27年度日本生化学会関東支部例会, Jun. 2015

Development of new methods to compensate distortion of quantitation caused by difference in molecular weight (transverse relaxation time)
Okamura, H; Nishimura, H; Nagata, T; Kigawa, T; Watanabe, T; Katahira, M
53rd Ann. Meeting NMR Soc. Japan, 05 Nov. 2014, Peer-reviewed

Characterization of RNA aptamer targeting the DNA binding domain of AML1 protein
Takada, K; Amano, R; Tanaka, Y; Nagata, T; Katahira, M; Nakamura, Y; Kozu, T; Sakamoto, T
The 41st International Symposium on Nucleic Acids Chemistry, Nov. 2014

CCND1転写抑制とテロメア短縮をもたらすTLS/FUSによる非コードRNAとDNA認識機構のNMR法による解明
近藤敬子; 真嶋司; 山置佑大; 大吉崇文; 黒川理樹; 永田崇; 片平正人
第37回日本分子生物学会年会.横浜, Nov. 2014

Deamination mechanism of an anti-HIV APOBEC3G coupled with sliding on single-stranded DNA as analyzed by real-time NMR monitoring method
K. Kanba; A. Furukawa; K. Sugase; T. Nagata; M. Katahira
The 41st International Symposium on Nucleic Acids Chemistry.Fukuoka, Nov. 2014

分子量(横緩和時間)の差に由来する物質定量のゆがみを克服する新しい測定法の開発
岡村英保; 西村裕志; 永田崇; 木川隆則; 渡辺隆司; 片平正人
第53回NMR討論会.吹田, Nov. 2014

神経系幹細胞の未分化状態維持と発癌に関わるMusashi1タンパク質の構造基盤
岩岡諒; 小林直宏; 津田健吾; 今井貴雄; 岡野栄之; 永田崇; 片平正人
第53回NMR討論会.吹田, Nov. 2014

MagRO-NMRView、FLYAによる高度に自動化されたＮＭＲデータ解析
小林直宏; Bikash Ranjan Sahoo; 永田崇; 服部良一; Elena Schmidt; Peter Güntert; 児嶋長次郎; 藤原敏道
第53回NMR討論会.吹田, Nov. 2014

Creation of novel Tat-binding aptamer and ribozyme whose activities switch on in response to K+ via quadruplex formation
Y. Yamaoki; T. Mashima; T. Nagata; M. Katahira
The 41st International Symposium on Nucleic Acids Chemistry.Fukuoka, Nov. 2014

神経系幹細胞の未分化状態維持と発癌に関わるMusashi1タンパク質RBD2の構造機能解析
岩岡諒; 小林直宏; 津田健吾; 今井貴雄; 岡野栄之; 永田崇; 片平正人
第37回日本分子生物学会年会.横浜, Nov. 2014

実時間NMR法による抗HIV因子APOBEC3Gのスライディングにカップルした脱アミノ化機構の解析
神庭圭佑; 永田崇; 片平正人
第37回日本分子生物学会年会.横浜, Nov. 2014

AML1 Runt domainとRNAアプタマーの相互作用のNMR解析
高田健多; 天野亮; 永田崇; 片平正人; 野村祐介; 田中陽一郎; 中村義一; 神津知子; 坂本泰一
第37回日本分子生物学会年会.横浜, Nov. 2014

Development of new NMR methods for correct quantitation on biomass components
Okamura, H; Nishimura, H; Nagata, T; KIgawa, T; Watanabe, T; Katahira, M
5th Int. Symp. Adv. Energy Sci., Kyoto, 01 Oct. 2014

NMR study of the Interaction between MDM2 and a Peptide Selected by mRNA Display
T. Nagata; K. Shirakawa; N. Kobayashi; H. Shiheido; N. Tabata; Y. Sakuma-Yonemura; K. Horisawa; M. Katahira; N. Doi; H. Yanagawa
Biophysical Society Thematic Meeting Disordered Motifs and Domains in Cell Control.Dublin, Oct. 2014

Real-time NMR monitoring of enzymatic reaction of anti-HIV protein, structure of anti-prion RNA aptamer and wood biomass analysis
Kanba, K; Mashima, T; Okamura, H; Furukawa, A; Sugase, K; Nishimura, H; Watanabe, T; Nagata, T; Katahira, M
The 5th Japan-Taiwan NMR symposium.Sapporo, Sep. 2014

Development of Tat-binding aptamer and ribozyme which switch their activities in response to K+
Y. Yamaoki; T. Mashima; T. Nagata; M. Katahira
第52回日本生物物理学会年会.札幌,2014.9.25-27, Sep. 2014

Screening for novel aptamer against prion protein and its structural study
T. Mashima; F. Nishikawa; Y.O. Kamatari; T. Nagata; S. Nishikawa; K. Kuwata; M. Katahira
第52回日本生物物理学会年会.札幌,2014.9.25-27, Sep. 2014

Substrate Recognition and Sliding Properities of an Anti-HIV Factor APOBEC3G analyzed by Real-time NMR Monitoring Strategy
K. Kamba; T. Nagata; M. Katahira
第52回日本生物物理学会年会.札幌,2014.9.25-27, Sep. 2014

NMR analysis of the interaction between an artificial RNA and a transcription factor
K. Takada; R. Amano; T. Nagata; M. Katahira; Y. Nomura; Y. Tanaka; Y. Nakamura; T. Kozu; T. Sakamoto
The 5th International Symposium of Advanced Energy Science -Contribution to Zero-Emission Energy-,Uji, Sep. 2014

Functional mechanism of an anti-HIV protein, APOBEC3G, as revealed by real-time NMR monitoring of its enzymatic reaction
K. Kanba; A. Furukawa; K. Sugase; R. Morishita; T. Nagata; M. Katahira
XXVIth International Conference on Magnetic Resonance in Biological Systems.Dallas, Aug. 2014

PROPERTIES OF RNA APTAMER BINDING TO AML1 RUNT DOMAIN
R. Amano; Y. Nomura; T. Nagata; N. Kobayashi; Y. Mori; K. Takada; J. Fukunaga; Y. Tanaka; M. Katahira; Y. Nakamura; T. Kozu; T. Sakamoto
XXI ROUND TABLE ON NUCLEOSIDES, NUCLEOTIDES AND NUCLEIC ACIDS CHEMICAL BIOLOGY OF NUCLEIC ACIDS.Poland, Aug. 2014

Functional mechanism of anti-HIV protein, APOBEC3G, elucidated by real-time monitoring of enzymatic reaction, and anti-prion activity of an RNA aptamer with its structural basis
K. Kanba; A. Furukawa; K. Sugase; R. Morishita; T. Nagata; M. Katahira
The 45th Annual Meeting of Korean Magnetic Resonance Society, Jul. 2014, Invited

カリウムイオンを感知して自らの活性をスイッチングするTat捕捉アプタマーおよびリボザイムの創製
山置佑大; 真嶋司; 永田崇; 片平正人
第16回日本RNA学会年会.名古屋, Jul. 2014

Structural and functional analysis of Musashi, a neural and oncogenic RNA-binding protein
R. Iwaoka; T. Nagata; T. Imai; H; Okano; M. Katahira
第16回日本RNA学会年会.名古屋, Jul. 2014

AML1タンパク質のRuntドメインに結合するRNAアプタマーの取得と解析
高田健多; 天野亮; 永田崇; 片平正人; 中村義一; 神津知子; 坂本泰一
日本生化学会関東支部定例会.水戸, Jun. 2014

The structural and energetic basis for the high-potency inhibition of MDM2-p53 interaction by MDM2-binding peptide obtained with IVV method
T. Nagata; K. Shirakawa; B.R. Sahoo; H. Shiheido; K. Horisawa; M. Katahira; N. Kobayashi; N. Doi; H. Yanagawa
第14回日本蛋白質科学会年会.横浜, Jun. 2014

CCND1転写抑制とテロメア短縮に関与する天然変性蛋白質TLS/FUSによる非コードRNAとDNAの認識機構のNMR法による解明
近藤敬子; 真嶋司; 大吉崇文; 黒川理樹; 永田崇; 片平正人
第14回日本蛋白質科学会年会.横浜, Jun. 2014

NMRによるAML1 Runtドメインと RNAアプタマーの相互作用の解析
天野亮; 野村祐介; 永田崇; 小林直宏; 高田健太; 福永淳一; 田中陽一郎; 片平正人; 中村義一; 神津知子; 坂本泰一
平成26年度日本分光学会年次講演会、和光、2014.5, May 2014

Statistical Thermodynamics for The Molecular Recognition Accompanied by a Global Structural Change of a Molecule
T. Hayashi; H. Oshima; T. Mashima; T. Nagata; M. Katahira; M. Kinoshita
Nagoya Symposium on Deplection Forces: Celebrating the 60th Anniversary of the Asakura-Oosawa Theory.Nagoya, Mar. 2014

Statistical Thermodynamics for Binding of an RNA Aptamer and a Partial Peptide of a Prion Protein
T. Hayashi; H. Oshima; T. Mashima; T. Nagata; M. Katahira; M. Kinoshita
58th Annual Meeting of the Biophysical Society of USA.San Francisco, Feb. 2014

3P032 Substrate Recognition and Sliding Properties of an Anti-HIV Factor APOBEC3G analyzed by Real-time NMR Monitoring Strategy(01B. Protein: Structure & Function,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))
Kamba Keisuke; Nagata Takashi; Katahira Masato
Seibutsu Butsuri, 2014

1P121 Search for novel aptamer against prion protein and its structural study(05A. Nucleic acid : Structure & Property,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))
Mashima Tsukasa; Nishikawa Fumiko; Kamatari Yuji O.; Nagata Takashi; Nishikawa Satoshi; Kuwata Kazuo; Katahira Masato
Seibutsu Butsuri, 2014

神経系幹細胞の未分化状態維持に関わる Musashi1 タンパク質の機能発現の分子メカニズム
岩岡諒; 櫻井悠子; 鍵矢悦久; 今井貴雄; 岡野栄之; 永田崇; 片平正人
第36回日本分子生物学会年会.神戸, Dec. 2013

Development of quadruplex hammerhead ribozyme which switches on its ribozyme activity: introduction of quadruplex-forming complementary DNA to repress a basal activity
Y. Yamaoki; T. Mashima; T. Nagata; M. Katahira
第36回日本分子生物学会年会.神戸, Dec. 2013

四重鎖構造を形成する核酸の抗プリオン活性
真嶋司; 西川富美子; 鎌足雄司; 才村正幸; 永田崇; 西川諭; 桑田一夫; 片平正人
第36回日本分子生物学会年会.神戸, Dec. 2013

ヒト抗ウィルス因子 APOBEC3G の基質認識機構及び Vif による APOBEC3G 阻害機構の解明に向けて
神庭圭佑; 永田崇; 片平正人
第36回日本分子生物学会年会.神戸, Dec. 2013

mRNA ディスプレイ法により選択された高親和性MDM2結合ペプチドＭＩＰに基づくＭＤＭ2－ｐ53相互作用阻害剤の開発
白川貴恵; 永田崇; 小林直弘; 始平堂弘和; 新倉啓介; 片平正人; 堀澤健一; 土居信英; 柳川弘志
第36回日本分子生物学会年会.神戸, Dec. 2013

転写因子AML1に対して複数の結合部位を持つ高親和性RNAアプタマーの解析
天野亮; 野村祐介; 永田崇; 森瑶子; 福永淳一; 田中陽一郎; 片平正人; 中村義一; 神津知子; 坂本泰一
第36回日本分子生物学会年会.神戸, Dec. 2013

Dual-quadruplex forming ribozyme distinctly switches on its activity in response to K+
Y. Yamaoki; T. Mashima; T. Nagata; M. Katahira
The 40th International Symposium on Nucleic Acids Chemistry 2013.Yokohama, Nov. 2013

Origin of the anti-prion activity of quadruplex
T. Mashima; F. Nishikawa; Y.O. Kamatari; M. Saimura; T. Nagata; S. Nishikawa; K. Kuwata; M. Katahira
The 40th International Symposium on Nucleic Acids Chemistry 2013.Yokohama, Nov. 2013

Structural basis for the inhibition of MDM2:p53 interaction by highly selective MDM2-binding peptide obtained with IVV method
NAGATA Takashi
第52回日本核磁気共鳴学会.金沢, Nov. 2013

Multi-site binding of high affinity aptamers against AML1 Runt domain
R. Amano; Y. Nomura; T. Nagata; N. Kobayashi; Y. Mori; J. Fukunaga; Y. Tanaka; M. Katahira; Y. Nakamura; T. Kozu; T. Sakamoto
The 40th International Symposium on Nucleic Acids Chemistry 2013.Yokohama, Nov. 2013

Aptamer that exerts anti-prion activity and intelligent ribozyme whose activity awitches in reponse to K+
M. Katahira; T. Mashima; Y. Yamaoki; T. Nagata; F. Nishikawa; S. Nishikawa; Y. Kamatari; K. Kuwata
日本生物物理学会第51回年会.京都, Oct. 2013

Structual description for the strong binding of the peptide selected by mRNA display to MDM2
T. Nagata; K. Shirakawa; N. Kobayashi; H. Shiheido; M. Katahira; K. Horisawa; N. Doi; H. Yanagawa
5th Asia-Pacific NMR Symposium.Brisbane, Oct. 2013

Statistical Thermodynamics for Binding of an RNA Aptamer and a Partial Peptide of a Prion Protein
T. Hayashi; H. Oshima; T. Mashima; T. Nagata; M. Katahira; M. Kinoshita
Seibutsu Butsuri, Oct. 2013

NMR analysis of the interaction between an artificial RNA and atranscription factor
R. Amano; Y. Nomura; T. Nagata; N. Kobayashi; Y. Mori; J. Fukunaga; Y. Tanaka; M. Katahira; Y. Nakamura; T. Kozu; T. Sakamoto
The 4th International Symposium of Advanced Energy Science.Uji, Sep. 2013, Invited

Mechanism of high affinity and anti-prion activity of anti-prion aptamer
T. Mashima; F. Nishikawa; Y.O. Kamatari; H. Fujiwara; M. Saimura; T. Nagata; T. Kodaki; S. Nishikawa; K. Kuwata; M. Katahira
The 10th Korea-Japan Bilateral Symposium on Biological NMR.Seoul, Jul. 2013

カリウムイオンによって活性がスイッチングする四重鎖リボザイムの創製：四重鎖形成相補鎖によるスイッチング性能の向上
山置佑大; 真嶋司; 永田崇; 片平正人
第15回日本RNA学会年会.松山, Jul. 2013

プリオン蛋白質を標的とするＲＮＡアプタマーの認識メカニズムとその抗プリオン活性
真嶋司; 西川富美子; 鎌足雄司; 藤原弘道; 遠藤美紗; 永田崇; 小瀧努; 西川諭; 桑田一夫; 片平正人
第13回日本蛋白質科学会年会.鳥取, Jun. 2013

NMR実時間計測法により抗ウィルス因子APOBEC3Gのシチジン脱アミノ化反応の配列依存性を評価する
神庭圭佑; 小瀧努; 永田崇; 片平正人
第13回日本蛋白質科学学会年会.鳥取, Jun. 2013

転写因子AML1を標的としたRNAアプタマーによるDNAの擬態
天野亮; 野村祐介; 永田崇; 森瑶子; 福永淳一; 田中陽一郎; 片平正人; 中村義一; 神津知子; 坂本泰一
第8回日本ケミカルバイオロジー学会.東京, Jun. 2013

2P125 Enhancement of a Quadruplex-ribozyme activity in response to K^+: a quadruplex-forming complementary DNA enables accurate switching(05A. Nucleic acid: Structure & Property,Poster)
Yamaoki Yudai; Mashima Tsukasa; Nagata Takashi; Katahira Masato
Seibutsu Butsuri, 2013

2P126 Structural basis of anti-prion aptamer and its activity(05A. Nucleic acid: Structure & Property,Poster)
Mashima Tsukasa; Nishikawa Fumiko; Kamatari Yuji O.; Saimura Masayuki; Nagata Takashi; Nishikawa Satoshi; Kuwata Kazuo; Katahira Masato
Seibutsu Butsuri, 2013

3SCA-02 Aptamer that exerts anti-prion activity and intelligent ribozyme whose activity switches in response to K^+(3SCA Frontier of functional nucleic acids toward elucidation of biological events and nucleic acid medicine,Symposium)
Katahira Masato; Mashima Tsukasa; Yamaoki Yuudai; Nagata Takashi; Nishikawa Fumiko; Nishikawa Satoshi; Kamatari Yuji; Kuwata Kazuo
Seibutsu Butsuri, 2013

Anti-prion activity of an RNA aptamer and its structural basis.
Tsukasa Mashima; Fumiko Nishikawa; Yuji O Kamatari; Hiromichi Fujiwara; Masayuki Saimura; Takashi Nagata; Tsutomu Kodaki; Satoshi Nishikawa; Kazuo Kuwata; Masato Katahira
Nucleic acids research, Jan. 2013

Molecular recognition between an aptamer and IDP that dirupts brain function
Takashi Nagata
The 2nd International Symposium of Intrinsically Disordered Proteins，2013.Yokohama, Jan. 2013

Creation of Novl Ribozyme whose Activity Switches on in Response to K+ via Quadruples Formation
Yamaoki, Y; Mashima, T; Sakurai, Y; Hara, Y; Kodaki, T; Nagata, T; Katahira, M
第35回日本分子生物学会年会.福岡, Dec. 2012

NMR Real-time Monitoring of the Deamination Reaction of Human Antiviral Factor APOBEC3G
K. Kamba; A. Furukawa; T. Kodaki; T. Nagata; M. Katahira
第35回日本分子生物学会年会.福岡, Dec. 2012

Interaction of RNA Aptamer with Prion Protein and Monitoring of Biodegradation of Wood Biomass
Tsukasa Mashima; Hiroshi Nishimura; Hideyasu Okamura; Fumiko Nishikawa; Yuji O. Kamatari; Takashi Nagata; Satoshi Nishikawa; Kazuo Kuwata; Takashi Watanabe; Masato Katahira
The 51st Annual Meeting of NMR Society of Japan, Nagoya, 09 Nov. 2012, Peer-reviewed

Strctural analysisi of RNA aptamer in complex with prion protein, and its anti-prion activity
Mashima, T; Nishikawa, F; Kamatari, O. Y; Fujiwara, H; Saimura, M; Nagata, T; Kodaki, T; Nishikawa, S; Kuwata, K; Katahira, M
The 39th International Symposium on Nucleic Acids Chemistry.Nagoya,2012.11.15-17, Nov. 2012

プリオンタンパク質とRNAアプタマーの相互作用及び木質バイオマスの生分解のモニタリング
真嶋司; 西村裕志; 岡村英保; 西川富美子; 鎌足雄司; 永田崇; 西村諭; 桑田一夫; 渡辺隆司; 片平正人
第51回NMR討論会.名古屋, Nov. 2012

抗HIV宿主因子 APOBEC3Gの位置依存的デアミネーション反応機構の解明
Furukawa, A; Sugase, K; Morishita, R; Nagata, T; Ryo, A; Takaori, A; Katahira, M
日本生物物理学会第50回年会.名古屋, Sep. 2012

カリウムイオン依存的な四重鎖構造形成によって活性がオンになるインテリジェントリボザイムの創製
Yamaoki, Y; Mashima, T; Sakurai, Y; Hara, Y; Nagata, T; Katahira, M
日本生物物理学会第50回年会.名古屋, Sep. 2012

Anti-prion activity and it strucural basis of RNAaptamer, and sliding-direction-dependent deaminase activity of anti-HIV enzyme
T. Mashima; A. Furukawa; K. Sugase; H. Fujiwara; F. Nishikawa; R. Morishita; A. Ryo; Y. Kamatari; T. Nagata; S. Nishikawa; K. Kuwata; M. Katahira
XXV international Conference on Magnetic Resonance in Biological Systems，2012.Lyon,2012.8.19-24., Aug. 2012

NMR analysis of the interaction between AML1 Runt domain and RNA aptamer
R. Amano; Y. Nomura; T. Nagata; J. Fukunaga; Y. Tanaka; M. Katahira; Y. Nakamura; T. Kozu; T. Sakamoto
XXV international Conference on Magnetic Resonance in Biological Systems，2012.Lyon,2012.8.19-24., Aug. 2012

Elucidation of the location-dependent deamination reaction mechanism of an anti-HIV factor,APOBEC3G
A. Furukawa; K. Sugase; R. Morishita; A. Ryo; A. akaori; T. Nagata; M. Katahira
XXV international Conference on Magnetic Resonance in Biological Systems，2012, Aug. 2012

Anti-prion activity and its structural basis of RNA aptamer,and sliding-direction-dependent deaminase activity of anti-HIV enzyme
Mashima.T,Furukawa.A; Sugase.K; Fugiwara.H; Nishikawa.F; Morishita.R,Ryo.A; Kamatari.Y; Nagata.T; Nishikawa.S; Kuwata.K; Katahira.M
XXV international Conference on Magnetic Resonance in Biolgical Systems. Lyon, 18 Jul. 2012

Sequence-specific RNA-recognition mechanism of Musashi1, neural and oncogenic RNA-binding Protein
Ohyama, T; Nagata, T; Tsuda, K; Kobayashi, N; Imai, T; Okano, H; Yamazaki, T; Katahira, M
XXV international Conference on Magnetic Resonance in Biolgical Systems. Lyon, 18 Jul. 2012

カリウムイオン濃度を感知して活性がオンになるインテリジェントリボザイムの創製
山置雄大; 真嶋司; 櫻井佑; 原ゆかり; 永田崇; 片平正人
第14回日本RNA学会年会, 仙台, 2012.7.18-20, Jul. 2012

RNAアプタマーの抗プリオン活性とその構造的基礎
真嶋司; 西川富美子; 鎌足雄司; 藤原弘道; 永田崇; 小瀧努; 西川諭; 桑田一夫; 片平正人
第14回日本RNA学会年会.仙台, Jul. 2012

Sliding-direction-dependent activity of anti-HIV enzyme,and structural basis of anti-prion activity of RNA aptamer
Furukawa, A; Mashima, T; Sugase, K; Fujiwara, H; Nagata, T; Morishita, R; Ryo, A; Nishikawa, F; Nishikawa, S; Kamatari, KO; Kuwata, K; Katahira, M
Korea-Japan Bilateral NMR Symposium, 16 Mar. 2012

大型装置の連携利用による有用バイオマス生分解の実時間モニタリングとメカニズムの解明
西村裕志; 西村裕志; 小澤佑; 永田崇; 小瀧努; 小瀧努; 渡辺隆司; 片平正人; 片平正人
京都大学生存基盤科学研究ユニット研究成果報告書, Feb. 2012

3PT003 A study on deaminase activity of APOBEC3C by NMR(The 50th Annual Meeting of the Biophysical Society of Japan)
Iwaoka Ryo; Kitamura Shingo; Kanba Keisuke; Furukawa Ayako; Okamura Hideyasu; Sugiura Wataru; Nagata Takashi; Iwatani Yasumasa; Katahira Masato
Seibutsu Butsuri, 2012

NMR法によるAPOBEC3Gデアミネース活性に関する研究
Iwaoka; S. Kitamura; K. Kanba; A. Furukawa; H. Okamura; W. Sugiura; T. Nagata; Y. Iwatani; M. Katahira
日本生物物理学会第50回年会，2012, 2012, Peer-reviewed

Development of intelligent ribozyme whose activity switches on in response to K＋ｖia quadruplex formation
Y. Yamaoki; T. Mashima; Y. Sakurai; Y. Hara; T. Nagata; M. Katahira
The 39th International Symposium on Nucleic Acids Chemistry，2012, 2012, Peer-reviewed

MR analysis of the interaction between AML1 Runt domain and RNA aptamer
R. Amano; Y. Nomura; T. Nagata; J. Fukunaga; Y. Tanaka; M. Katahira; Y. Nakamura; T. Kozu; T. Sakamoto
XXV international Conference on Magnetic Resonance in Biological Systems，2012, 2012, Peer-reviewed

RNAアプタマーとAML1 Runt domainの相互作用解析
天野亮; 野村祐介; 永田崇; 福永淳一; 田中陽一郎; 片平正人; 中村義一; 神津知子; 坂本泰一
第14回日本RNA学会年会，仙台，2012.7.18-20, 2012

Structural basis for the sequence-specific RNA-recognition mechanism of Musashi 1
Ohyama, T; Nagata, T; Tsuda, K; Kobayashi, N; Imai, T; Okano, H; Yamazaki, T; Katahira, M
第34回日本分子生物学会年会.横浜, Dec. 2011

Real-time monitoring of the cytidine deamination along single-stranded DNA by an anti-HIV factor, APOBEC3G
Furukawa, A; Sugase, K; Morishita, R; Nagata, T; Ryo, A; Takaori, A; Katahira, M
The International Symposium on Nuclear Magnetic Resonance 2011, 15 Nov. 2011

r(GGA)4 chimeric ribozyme switches its activity in responseto K+ via quadruplex formation
Nagata, T; Sakurai, Y; Hara, Y; Mashima, T; Kodaki, T; Katahira, M
The 38th International Symposium on Nucleic Acid Chemistry, 09 Nov. 2011

Quantitative analysis of location- and sequence-dependent deamination by APOBEC3G using real-time NMR spectroscopy
A. Furukawa; K. Sugase; R. Morishita; T. Nagata; T. Kodaki; A. Takaori-Kondo; A. Ryo; M. Katahira
日本生物物理学会第49回年会，姫路，2011.9.16-18, Nov. 2011

リアルタイムモニタリングによって示されたAPBEC3GによるDNA上の極性を有したスライディングとカップルしたシトシン脱アミノ基反応
Katahira, M; Furukawa, A; Nagata, T; Takaku, H; Morishita, R; Takaori, A; Ryo, A
第49回日本生物物理学会年会.姫路, Sep. 2011

NMR study of XMRV protease in complex with an inhibitor
Okamura, H; Matsunaga, T; Furukawa, A; Sato, Y; Iwaoka, R; Nagata, T; Kobayashi, N; Takaori, A; Morishita, R; Ryo, A; Katahira, M
第49回日本生物物理学会年会.姫路, Sep. 2011

MagRO-Assign: a tool for automated sequence specific assignment of chemical shifts for NMR signals of protein backbone
Kobayashi, N; Furukawa, A; Kitazawa, R; Nagata, T; Kitahara, R; Katahira, M; Fujiwara, T
EUROMAR2011. Frankfurt, 21 Aug. 2011

XMRVプロテアーゼのNMRによる構造解析
古川亜矢子; 松永智子; 岩岡諒; 永田崇; 小林直弘; 高折晃史; 森下了; 梁明秀; 片平正人
第１１回日本蛋白質科学会年会.大阪, Jun. 2011

1SD-06 Coupling between cytidine-deamination by APOBEC3G and its sliding along DNA with polarity as revealed with real-time monitoring by NMR(1SD Dynamical aspects of proteins by NMR,The 49th Annual Meeting of the Biophysical Society of Japan)
Katahira Masato; Furukawa Ayako; Nagata Takashi; Takaku Hiroshi; Morishita Ryo; Takaori Akifumi; Ryo Akihide
Seibutsu Butsuri, 2011

NMRによるXMRVプロテアーゼとその阻害剤との複合体の構造生物学的研究
H. Okamura; T. Matsunaga; A. Furukawa; Y. Sato; R. Iwaoka; T. Nagata; N. Kobayashi; A. Takaori; R. Morishita; A. Ryo; M. Katahira
日本生物物理学会第49回年会，姫路，2011.9.16-18, 2011, Peer-reviewed

Musashi1蛋白質-標的RNA複合体に含まれる新たな核酸塩基認識機構
大山貴子; 永田崇; 今井貴雄; 岡野栄之; 山崎俊夫; 片平正人
第49回NMR討論会、東京, Dec. 2010

RNAアプタマー：プリオンタンパク質部分ペプチド複合体の構造及びA3Gタンパク質のDNA上スライディングの解析
古川亜矢子; 真嶋司; 岩岡諒; 越田高史; 永田崇; 森下了; 梁明秀; 高折晃史; 西川富美子; 西川諭; 片平正人
第49回NMR討論会、東京, Dec. 2010

Structural and functional analysis of the translational repression complex that plays a key role in differentiation regulation
Ohyama, T; Nagata, T; Tanaka, S; Iikura, H; Imai, T; Okano, H; Yamazaki, T; Katahira, M
第33回日本分子生物学会年会、第83回日本生化学会大会合同大会.神戸, Dec. 2010

植物転写因子GT-1がリン酸化によりDNA結合能を上昇させる分子機構の解明
藤本なつき; 長崎祐也; 能登和明; 村田純; 平塚和之; 永田崇; 片平正人
第33回日本分子生物学会年会、第83回日本生化学会大会合同大会.神戸, Dec. 2010

RNAi関連因子TRBPの構造生物学的解析
山下征輔; 永田崇; 川添将仁; 竹本千重; 赤坂領吾; 木川隆則; 滝元宏治; 武藤裕; 脇山素明; 横山茂之
第33回日本分子生物学会年会、第83回日本生化学会大会合同大会.神戸, Dec. 2010

A mechanism for an increase in DNA-binding affinity of the trihelix DNA-binding domain via its phosphorylation
Nagata, T; Niyada, E; Fujimoto, N; Nagasaki, Y; Noto, K; Miyanoiri, Y; Murata, J; Hiratsuka, K; Katahira, M
The 37th International Symposium on Nucleic Acids Chemistry, 10 Nov. 2010

抗ＨＩＶ因子ＡＰＯＢＥ３Ｇによる酵素反応のリアルタイムモニタリング
古川亜矢子; 永田崇; 森下了; 梁明秀; 高折晃史; 片平正人
平成22年度日本分光学会年次講演会, Nov. 2010, Peer-reviewed

マウスMusashi1による標的ＲＮＡの認識
大山貴子; 永田崇; 今井貴雄; 岡野栄之; 山崎俊夫; 片平正人
第49回ＮＭＲ討論会, Nov. 2010, Peer-reviewed

「ＮＭＲシグナルを用いた抗ウィルス因子活性のリアルタイムモニタリング
古川亜矢子; 永田崇; 森下了; 高折晃史; 梁明秀; 片平正人
第58回日本ウィルス学会学術集会.徳島, Nov. 2010

APOBEC3Gが抗HIV活性を発揮する酵素反応のリアルタイムモニタリング
古川亜矢子; 永田崇; 森下了; 梁昭秀; 高折晃史; 片平正人
平成22年度日本分光学会.京都, Nov. 2010

The real-time monitoring of the enzymatic reaction of an anti-HIV factor APOBEC3G
Nagata, T; Mashima, T; Iwaoka, R; Sugiyama, R; Takaku, H; Takaori, A; Ryo, A; Katahira, M
第48回生物物理学会年会.仙台,2010.9.20, Sep. 2010

The real-time monitoringof the enzymatic reaction of an anti-HIV factor APOBEC3G
Furukawa, A; Nagata,T; Morishita, R; Iwaoka, R; Katahira, M
XXIV International Conference on Magnetic Resonance in Biological Systems, Cairns, 22 Aug. 2010

Heat shock protein 70 inhibits HIV-1 Vif-mediated ubiquitination and degradation of Apobec3G
Ryuichi Sugiyama; Hironori Nishitsuji; Yuichiro Habu; Haruki Naganuma; Hiroshi Koseki; Ayako Furukawa; Takashi Nagata; Masato Katahira; Hiroshi Takaku
EUROPEAN JOURNAL OF MEDICAL RESEARCH, Aug. 2010

Structures of telomere DNA in K+ solution, Musashi in complex with RNA, and wild and mutant (phosphorylation-mimicking) DNA-binding proteins, GT-1
Ohyama, T; Tsuchibayashi, H; Matsugami, A; Miyanoiri, Y; Niyada, E; Nagata, T; Katahira, M
XXII International Conference on Magnetic Resonance in Biological System.Cairns,2010.8.22-27, Aug. 2010

Real-time monitoring of the enzymatic reaction of APOBEC3G possessing anti-HIV activity, and the structure of the RNA aptamer against prion protein
Furukawa, A; Mashima, T; Matsugami, A; Nagata. T; Sugiyama, R; Takaku, H; Nishikawa, F; Nishikawa, S; Katahira, M
International Symposium of Korean Society of Biochemistry and Molecular Biology -Structural Biology and Drug Discovery, Aug. 2010

分化制御の鍵をにぎる翻訳抑制複合体のNMR構造機能解析
大山貴子; 永田崇; 田中志穂; 飯倉裕之; 河原裕憲; 今井貴雄; 岡野栄之; 山崎俊夫; 片平正人
第１2回日本RNA学会年会、東京, Jul. 2010

植物転写因子GT-1のDNA結合活性がリン酸化により増強する分子機構
永田崇; 長崎祐也; 藤本なつき; 能登和明; 二矢田絵美; 宮ノ入洋平; 村田純; 平塚和之; 片平正人
第１０回日本蛋白質科学会年会．北海道, Jun. 2010

HIV遺伝子上でのAPOBEC3Gによるシチジンデアミネーション反応の動作機序
古川亜矢子; 永田崇; 森下了; 杉山隆一; 高久洋; 高折晃史; 梁明秀; 片平正人
第１０回日本蛋白質科学会年会．北海道, Jun. 2010

1P122 1D1255 The real-time monitoring of the enzymatic reaction of an anti-HIV factor APOBEC3G(Nucleic acid binding proteins,Oral Presentations,The 48th Annual Meeting of the Biophysical Society of Japan)
Furukawa Ayako; Nagata Takashi; Morishita Ryo; Iwaoka Ryo; Sugiyama Ryuichi; Takaku Hiroshi; Takaori Akifumi; Ryo Akihide; Katahira Masato
Seibutsu Butsuri, 2010

抗HIV活性を有する天然型APOBEC3Gタンパク質の構造、1本鎖DNAとの相互作用及び酵素反応のリアルタイムモニタリング
古川亜矢子; 永田崇; 杉山隆一; 高久洋; 片平正人
第32回分子生物学会年会.横浜, Dec. 2009

抗HIV活性を保持するタンパク質APOBEC3Gの酵素反応のリアルタイムモニタリング
古川亜矢子; 中居佑介; 永田崇; 杉山隆一; 高久洋; 片平正人
第32回分子生物学会年会.横浜, Dec. 2009

翻訳制御に関わるMusashi1とPABP1の相互作用と立体構造の解析
飯倉裕之; 田中志穂; 樋口敬介; 河原裕憲; 今井貴雄; 岡野栄之; 永田崇; 片平正人
第32回分子生物学会年会.横浜, Dec. 2009

植物遺伝子の光制御に関連したGT-1タンパク質の構造と相互作用の研究
藤本なつき; 長崎裕也; 能登和明; 二矢田絵美; 村田純; 平塚和之; 永田崇; 片平正人
第32回分子生物学会年会.横浜, Dec. 2009

酵素反応のリアルタイムモニタリングとアプタマーによるプリオンタンパク質の捕捉機構
古川亜矢子; 真嶋司; 永田崇; 杉山隆一; 高久洋; 西川富美子; 西川諭; 片平正人
第４８回NMR討論会.九州大学, Nov. 2009

Structure, interaction and real-time monitoring of the enzymatic reaction of APOBEC3G which possesses anti-HIV activity
Furukawa, A; Nagata, T; Sugiyama, R; Takaku, H; Katahira, M
The 3rd Asia-Pacific NMR Symposium.Korea,2009.10.25-28, Oct. 2009

Musashi1,PABP,mRNAが構成する翻訳抑制複合体のNMR構造機能解析
永田崇; 大山貴子; 杉山孝司; 飯倉裕之; 樋口敬介; 河原裕憲; 今井貴雄; 岡野栄之; 山崎俊夫; 片平正人
日本RNA学会年会、2009.新潟, Jul. 2009

Anti-HIV-1 Activity of A3G is Enhanced by HSP70
Ryuichi Sugiyama; Yuichiro Habu; Haruki Naganuma; Hiroshi Koseki; Ayako Furukawa; Takashi Nagata; Masato Katahira; Hiroshi Takaku
ANTIVIRAL RESEARCH, May 2009

Molecular Mechanism for the reinforcement of DNA-binding activity of GT-1 via phosphorylation
永田崇; 長崎祐也; 藤本なつき; 能登和明; 二矢田絵美; 宮ノ入洋平; 村田純; 平塚和之; 片平正人
第9回日本蛋白質科学会年会.熊本, May 2009

HIVの複製を阻害するタンパク質APOBEC3Gの構造、相互作用及び酵素反応のリアルタイムモニタリング
古川亜矢子; 永田崇; 羽生勇一郎; 杉山隆一; 林文晶; 横山茂之; 高久洋; 片平正人
第9回日本蛋白質科学会年会.熊本, May 2009

熱により不可逆的に解離するPH0470由のSPFHドメイン多量体
桑原陽太; 雲財悟; 永田崇; 池上貴久; 廣明洋子; 藤吉好則; 廣明秀一
第9回日本蛋白質科学会年会.熊本, May 2009

A simultaneous RNA-binding mode of two RNA-binding domains of Musashi-1 analyzed by paramagnetic effects, PRE, PCS, and RDC
Takashi Nagata; Takako Ohyama; Ayako Furukawa; Takashi Sugiyama; Tsukasa Mashima; Takao Imai; Hideyuki Okano; Toshio Yamazaki; Masato Katahira
第46回日本生物物理学会.福岡, Dec. 2008

PARNのRRMドメインによるmRNA 5'キャップの認識機構
永田崇; 鈴木咲良; 遠藤竜太; 白水美香子; 寺田貴帆; 井上真; 木川隆則; eterGuntert; 小林直宏; 田仲昭子; 林崎良英; 武藤裕
第31回日本分子生物学会年会・第82回日本生化学会大会.神戸, Dec. 2008

HIVの複製を阻害するタンパク質APOBEC3Gの構造と相互作用の解析
古川亜矢子; 永田崇; 羽生勇一郎; 杉山隆一; 林文晶; 横山茂之; 高久洋; 片平正人
第31回日本分子生物学会年会・第82回日本生化学会大会.神戸, Dec. 2008

Musashiタンパク質とPABPの相互作用の解析
樋口敬介; 永田崇; 河原裕憲; 今井貴雄; 岡野栄之; 片平正人
第31回日本分子生物学会年会・第81回日本生化学会大会.神戸, Dec. 2008

テロメレースのリクルート及び活性の増強をもたらすUP1-テロメアDNA-テロメアRNAの三者複合体の相互作用の解明
藤本なつき; 永田崇; 高田祐輔; 前田忠計; 福田博政; 中釜斉; 片平正人
第31回日本分子生物学会年会・第81回日本生化学会大会.神戸, Dec. 2008

RDC、PRE及びPCSに基づいたMusashi-RNA複合体とプリオンタンパク質に対するRNAアプタマーの構造とダイナミクス
大山貴子; 松上明正; 古川亜矢子; 真嶋司; 杉山孝司; 今井貴雄; 岡野栄之; 西川富美子; 西川諭; 山崎俊夫; 永田崇; 片平正人
第４７回NMR討論会.筑波大学, Nov. 2008

Hsp70のHIV-1感染抑制
杉山隆一; 羽生勇一郎; 長沼晴樹; 小関寛; 永田崇; 古川亜矢子; 片平正人; 高久洋
第５６回ウィルス学会.岡山, Oct. 2008

Structural Studies of the RRM:mRNA 5' cap comple
Nagata, T; Suzuki, S; Endo, R; Shirouzu, M; Terada, T; Inoue, M; Kigawa, T; Guntert, P; Hayashizaki, Y; Muto, Y; Yokoyama, S
23rd International Conference of Magnetic Resonance in Biological Systems. San Diego, 24 Aug. 2008

Structures and interactions of 4’-thioDNA and RNA/DNA-binding proteins
Ohyama, T; Matsugami, A; Furukawa, A; Mashima, T; Sugiyama, T; Yamazaki, T; Nagata, T; Katahira, M
23rd International Conference of Magnetic Resonance in Biological Systems. San Diego, 24 Aug. 2008

Structural analysis of Musashi-RNA complex with paramagnetic effects
Ohyama, T; Nagata, T; Furukawa, A; Sugiyama, T; Mashima, T; Yamazaki, T; Katahira, M
XXIII International Conference on Magnetic Resonance in Biological Systems.San Diego,2008.8.24-29, Aug. 2008

Molecular Basis for the reinforcement of the affinity of GT-1 to DNA through phosphorylation
Takashi Nagata; Kazuaki Noto; Emi Niyada; Youhei Miyanoiri; Jun Murata; Kazuyuki Hiratsuka; Masato Katahira
第30回日本分子生物学会年会・第80回日本生化学会大会.横浜, Jul. 2008

構造を基盤とした転写修飾にかかわる因子の分子間相互作用解析
武藤裕; 桑迫香奈子; 何発虎; 鈴木咲良; 津田健吾; 高橋真梨; 永田崇; 党偉栄; 遠藤竜太; 染谷龍彦; 安部千景; 菅野純夫; 林崎良英; 横山茂之
第30回日本分子生物学会年会・第80回日本生化学会大会.横浜, Jul. 2008

hnRNP A1タンパク質のアンフォールド効果及びリクルート効果とテロメア長維持との関連
永田崇; 高田祐輔; 大柄晶太; 小野朝美; 小野愛美; 福田博政; 中釜斉; 石川冬木; 片平正人
第30回日本分子生物学会年会・第80回日本生化学会大会.横浜, Jul. 2008

HIV感染の防御に関与するAPOBEC3Gの構造機能解析
古川亜矢子; 水内祐基; 河合文隆; 羽生勇一郎; 杉山隆一; 高久洋; 永田崇; 片平正人
第30回日本分子生物学会年会・第80回日本生化学会大会.横浜, Jul. 2008

ロングレンジの構造情報を利用したMusashiタンパク質と標的RNAとの複合体の構造解析
大山貴子; 大柄晶太; 宮ノ入洋平; 古川亜矢子; 今井貴雄; 岡野栄之; 永田崇; 片平正人
第30回日本分子生物学会年会・第80回日本生化学会大会.横浜, Jul. 2008

NMRによる超高熱菌Pyrococcus horikoshii由来膜タンパク質PH0470 SPFHドメインの構造機能解析
桑原陽太; 雲財悟; 永田崇; 横山英志; 松井郁夫; 廣明秀一
第30回日本分子生物学会年会・第80回日本生化学会大会.横浜, Jul. 2008

ロングレンジの距離情報の抽出に基づいたマルチドメインタンパク質Musashiと標的RNAの複合体の構造解析
大山貴子; 永田崇; 古川亜矢子; 杉山孝司; 真嶋司; 今井貴雄; 岡野栄之; 山崎俊夫; 片平正人
RNA meeting 2008.札幌, Jul. 2008

Mechanisms underlying biological activities of RNA/DNA-binding proteins, examined on the basis of the combination of structure and relaxation analyses
Takako Ohyama; Ayako Furukawa; Tatsuya Miyoshi; Yusuke Takada; Shota Ogara; Kazuyuki Hiratsuka; Takao Imai; Hideyuki Okano; Hitoshi Nakagama; Takashi Nagata; Masato Katahira
第46回NMR討論会.北海道, Sep. 2007

RNP型RNA/DNA結合ドメインを有するタンパク質、hnRNP A1/DおよびMusashi-1に関するNMRを用いた構造研究
大山貴子; 永田崇; 高田祐輔; 大柄晶太; 宮ノ入洋平; 今井貴雄; 岡野栄之; 石川冬木; 中釜斉; 片平正人
第9回日本RNA学会年会.名古屋, Jul. 2007

“The structure of human telomeric DNA and the interactions of hnRNP A1/hnRNP D proteins with telomeric DNA
Matsugami, A; Ohyama, T; Ono, A; Ono, M; Nagata, T; Katahira, M
International Workshop on Perspectives on Stable Isotope Aided NMR Methods for Protein Structural Analysis, Osaka, 30 Mar. 2007

Structural studies on transcriptional and post-transcriptional gene regulation by NMR
Takashi Nagata; Takako Ohyama; Kazuaki Noto; Emi Niyada; Youhei Miyanoiri; Takao Imai; Hideyuki Okano; Jun Murata; Kazuyuki Hiratsuka; Masato Katahira
International Workshop on Perspectives on Stable Isotope Aided NMR Methods for Protein Structural Analysis, Osaka, 30 Mar. 2007

Molecular basis of microtubule disassembly mechanism regulated by katanin p60
Naoko Iwaya; Kouhei Akiyama; Satoru Unzai; Kentaro Tomii; Natsuko Goda; Takashi Nagata; Hidehito Tochio; Masahiro Shirakawa; Hidekazu Hiroaki
International Workshop on Perspectives on Stable Isotope Aided NMR Methods for Protein Structural Analysis, Osaka, 30 Mar. 2007

Structural studies on the neural RNA-binding protein Musashi1 in complex with its cognate RNA by NMR.
Ohyama, T; Nagata, T; Miyanoiri, Y; Imai, T; Okano, H; Katahira, M
RNA2006Izu, 03 Dec. 2006

植物遺伝子の光応答に関連したGT-1タンパク質のリン酸化による機能制御の構造基盤
能登和明; 二矢田絵美; 永田崇; 宮ノ入洋平; 上杉晴一; 村田純; 平塚和之; 片平正人
分子生物学会2006フォーラム, Dec. 2006

hnRNP A1タンパク質のテロメラーゼリクルート効果の構造学的研究
小野朝美; 大西秀典; 大柄晶太; 永田崇; 上杉晴一; 中釜斉; 福田博政; 片平正人
分子生物学会2006フォーラム, Dec. 2006

ラフト中のコレステロール結合タンパク質Perfringolysin Oの構造解析
中谷圭一郎; 河合文隆; 永田崇; 上杉晴一; 嶋田由紀子; 岩下淑子; 石井毅; 若松馨; 片平正人
分子生物学会2006フォーラム, Dec. 2006

Structural Biology of Functional RNA and DNA
MATSUGAMI Akimasa; KOIZUMI Daisuke; OHYAMA Takako; INADA Masashi; TSUCHIBAYASHI Hiroaki; NAGATA Takashi; XU Yan; NOGUCHI Yuuki; SUGIYAMA Hiroshi; UMEHARA Takuya; NISHIKAWA Fumiko; NISHIKAWA Satoshi; KATAHIRA Masato; KATAHIRA Masato; KATAHIRA Masato
Abstr Annu Meet NMR Soc Jpn, Nov. 2006

Structural analysis of Musashi protein complexed with the target RNA
Ohyama,T; Miyanoiri,Y; Nagata,T; Okano,H; Katahira,M
第45回NMR討論会.京都, Nov. 2006

Musashiタンパク質と標的RNAの複合体の構造解析
大山貴子; 宮ノ入洋平; 永田崇; 栃尾豪人; 岡野栄之; 片平正人
第8回日本RNA学会年会.淡路島, Jul. 2006

翻訳を抑制するタンパク質及びRNAに関する構造解析
松上明正; 小泉大輔; 菊池邦夫; 楳原琢也; 西川冨美子; 西川諭; 大山貴子; 宮ノ入洋平; 永田崇; 栃尾豪人; 岡野栄之; 片平正人
第8回日本RNA学会年会.淡路島, Jul. 2006

転写因子GT-1タンパク質のリン酸化によるDNA結合能上昇の構造学的基盤-リン酸化をミミックする変異型と天然型の構造比較-
二矢田絵美; 能登和明; 宮ノ入洋平; 栃尾豪人; 永田崇; 平塚和之; 片平正人
第6回日本蛋白質科学会年会.京都, Apr. 2006

Structures of telomere DNA in K+ solution, Musashi in complex with RNA, and wild and mutant (phosphorylation-mimicking) DNA-binding proteins, GT-1
Ohyama, T; Tsuchibayashi, H; Matsugami, A; Miyanoiri, Y; Niyada, E; Nagata, T; Katahira, M
XXII International Conference on Magnetic Resonance in Biological Systems, 2006, Peer-reviewed

New approaches to structure determination of Protein/DNA complexes by stable isotope-assisted NMR techniques
Nagata, T; Werner, M. H
Cold Spring Harbor Laboratory Meeting on Mechanisms of Eukaryotic Transcription, New York, 2001, 2001

Defining the functional motifs for DNA-binding and heterodimerization in AML1/RUNX1: Interactions with DNA, PEBP2b/CBFb and ETS1
Nagata, T; Werner, M. H
Cold Spring Harbor Laboratory Meeting on Mechanisms of Eukaryotic Transcription, 2001

Defining functional motifs for DNA-binding and heterodimerization for the AML1/RUNX1 transcription factor
Nagata, T; Werner, M. H
Keystone Symposia on Frontiers of NMR in Molecular Biology VII, 2001

Structure, backbone dynamics and interactions with RNA of RNA-binding domains of hnRNP D0 and Musashi1
Nagata, T; Matsuda, G; Kanno, R; Kobayashi, H; Saeki, J; Kurihara, Y; Kohno, T; Yanagida, Y; Ishikawa, F; Imai, T; Sakakibara, S; Okano, H; Uesugi, S; Katahira, M
XVIIIth International Conference on Magnetic Resonance in Biological Systems, 1998

Structure of UUAGGG-specific RNA binding protein hnRNP-D and it’s interaction with RNA
Nagata, T; Kurihara, Y; Kohno, T; Kajira, Y; Ishikawa, F; Katahira, M; Uesugi, S
The 11th Rinshoken International conference, 1996

Presentations

Development of the in-cell NMR methods to investigate the dynamics and structure of biomacromolecules at various time-scales
Takashi Nagata
京都大学エネルギー理工学研究所Ｒ5年度第4回センター談話会, 29 Nov. 2023, Invited

バイオマス利用に向けた構造生命科学的あアプローチ：可能性と挑戦
永田崇
京都大学宇治キャンパス公開2023エネルギー理工学研究所公開講演会, 22 Oct. 2023, Invited

Structural Biology Approaches to Biomass Utilization: Opportunities and Challenges
Takashi Nagata
The 14th International Symposium of Advanced Energy Science, 31 Aug. 2023, Invited

構造生命科学で挑むエネルギー問題
永田崇
京都大学第19回エネルギー理工学研究所公開講演会「宇治で発見？未来のエネルギー」, 10 May 2014, Invited

タンパク質のNMRシグナルの帰属・構造解析の基礎 ~自動化の時代~
永田崇
第22回若手NMR研究会 NMRによる多彩な生体試料へのアプローチ, 12 Sep. 2022, Invited

Analysis of Structure and Dynamics of Oligonucleotides in Living Human Cells
Takashi Nagata
Joint conference of ISMAR-APNMR-NMRSJ-SEST 2021, 2021.8.23-27., 26 Aug. 2021

NMR analysis of the protein containing intrinsically disordered region
Takashi Nagata
蛋白研セミナー生体系NMR法の最前線基礎から学ぶ最新 NMR解析法（第一回）ー構造解析の自動化, 06 Nov. 2020, Invited

Structural and functional study of the G-quadruplex anti-prion RNA aptamer and in-cell NMR of nucleic acids
Takashi NAGATA
International IPR Seminar, Open up a new era of structural biology with advanced NMR study, Osaka Univ., 2019.11.19-20, 19 Nov. 2019, Invited

Development of anti-prion RNA aptamers and destruction of the Alzheimer's disease-related complex
Takashi NAGATA
The 46th International Symposium on Nucleic Acids Chemistry, The 3rd Annual Meeting of Japan Society of Nucleic Acids Chemistry, Koganei Civic Center (Tokyo), 2019.10.29-31, 31 Oct. 2019

草木バイオマス有効利用と創薬開発に向けた構造生物学的アプローチ
永田崇
第32回京都大学宇治キャンパス産学交流会. 京都大学(宇治) 2019.6.27, 27 Jun. 2019, Invited

Evaluation of the structural stability and dynamics of nucleic acids inside the living cells by using in-cell NMR spectroscopy
Nagata T; Yamaoki Y; Katahira M
The 18th Annual Meeting of the Protein Society of Japan, 2018.6.26-28, Toki messe (Niigata), 28 Jun. 2018, Invited

機能性核酸の細胞内動的構造解析とDNA変換酵素のスライディングの活写
永田崇
新学術領域「動的構造生命」平成30年度第4回領域会議.ザ・ルイガンズ（福岡） 2018.6.12-14, 12 Jun. 2018, Invited

DNA変換酵素のスライディングと核酸の細胞内動的構造のNMRによる研究
永田崇
生物機能化学シンポジウムエネルギー理工学研究所主催エネルギー複合機構研究センター、国際・産学連携支援推進事業支援. 京都大学（宇治）2018.03.26, 26 Mar. 2018, Invited

木材分解酵素の構造機能相関研究～木質バイオマスの有効活用に向けた取り組み～
永田崇
京都大学エネルギー理工学研究所第8回センター談話会、2018.01.05, 05 Jan. 2018

機能性核酸の細胞内動的構造解析とDNA変換酵素のスライディングの活写
永田崇
新学術領域「動的構造生命」平成29年度第3回領域会議.ザ・ルイガンズ（福岡） 2017.6.5-7, 05 Jun. 2017, Invited

Structural study of RNA aptamer and peptide that potently perturb the function of intrinsically disordered proteins related to disease
Takashi NAGATA
The 5th International Symposium on Drug Discovery and Design by NMR, Riken Yokohama Campus, 2016.8.29-30, 29 Aug. 2016, Invited

DNA変換酵素のスライディングと共役した酵素活性機構の動的構造基盤の解明
永田崇
新学術領域「動的構造生命」平成28年度第2回領域会議.クロスウェーブ幕張（千葉） 2016.4.18-20, 18 Apr. 2016, Invited

NMR study of RNA aptamer and peptide selected with mRNA display that inhibit the function of disease-related intrinsically disordered proteins
Takashi NAGATA
Takashi Nagata, 29 Jan. 2016, Invited

DNA変換酵素のスライディングと共役した酵素活性機構の動的構造基盤の解明
永田崇
新学術領域「動的構造生命」平成27年度第1回領域会議.ザ・ルイガンズ(福岡) 2015.6.1-3, 01 Jun. 2015, Invited

Approaches to the protein structure, interaction, enzymatic activity by NMR
Takashi NAGATA
第56回日本生化学会中国-四国支部例会.島根大学大学会館 (松江), 29 May 2015, Invited

脳の機能を妨害する天然変性蛋白質とそれを標的とするアプタマーの分子認識機構の解明
永田崇
新学術領域「天然変性蛋白質」平成25年度第4回領域会議.ひだホテルプラザ（岐阜） 2013.9.3-5, 03 Sep. 2013, Invited

脳の機能を妨害する天然変性蛋白質とそれを標的とするアプタマーの分子認識機構の解明
永田崇
新学術領域「天然変性蛋白質」平成24年度第3回領域会議.北広島クラッセホテル（北海道）2012.5.30-6.1, 30 May 2012, Invited

酵素活性の実時間追跡と構造解析による抗HIV治療薬の開発型研究
永田崇
第7回先端医科学研究センタープロジェクト報告会.横浜, Jan. 2012, Invited

New approaches to structure determination of Protein/DNA complexes by stable isotope-assisted NMR techniques
Nagata, T; Werner, M. H
The Rockefeller University, "Tri-Lab" Scientific Exchange, 1999, Invited

Books and Other Publications

Experimental Approaches of NMR Spectroscopy -Methodology and Application to Life Science and Material Science 2nd Edition, in press
Nagata, T; Yamaoki, Y; Katahira, M, writing
Springer Nature, Jan. 2024, Refereed

Integrated Bio-metal Science
山置佑大; 永田崇; 片平正人, Contributor, 金属原子によるRNAの立体構造形成とその生理活性スイッチングへの応用, pp198-204
NTS, 15 Jan. 2021, Refereed

Observation of nucleic acids inside living human cells by in-cell NMR spectroscopy
Yamaoki Y; Nagata T; Sakamoto T; Katahira M, Joint work
Biophysics and Physicobiology, 13, 164, 2020, 26 May 2020, Refereed

Recent progress of in-cell NMR of nucleic acids in living human cells
Yamaoki Y; Nagata T; Sakamoto T; Katahira M, Joint work
Biophysical Reviews, 12, 411, 2020, 06 Mar. 2020, Refereed

ヒト生細胞中における核酸NMRシグナルの初計測
山置佑大; 永田崇; 片平正人, Joint work
生物物理誌, Jan. 2019, Not refereed

単独ドメインから成るタンパク質APOBEC3GC端ドメインはストランド間移動する能力を有する～実時間NMR計測法を用いた酵素活性測定の応用
神庭圭佑; 永田崇; 片平正人, Joint work
新学術領域「柔らかな分子系」ニュースレター第54号（平成30年2月号）, 54, Feb. 2018, Not refereed

ヒト生細胞中のDNAおよびRNAのNMRシグナル観測に初めて成功
山置佑大; 永田崇; 片平正人, Joint work
新学術領域「柔らかな分子系」ニュースレター第54号（平成30年2月号）, 54, Feb. 2018, Not refereed

APOBEC3Fの触媒中心近傍アミノ酸残基の役割と、DNA配列・長さ及びpHが脱アミノ化活性に及ぼす影響
永田崇; 片平正人, Joint work
新学術領域「柔らかな分子系」ニュースレター第54号（平成30年2月号）, 54, Feb. 2018, Not refereed

随想：杉とオークのバイオマス ~週末版~
永田崇, Single work
京都大学エネルギー理工学研究所ニュースレター第61号（平成28年7月号）, 61, 9, Jul. 2016, Not refereed

Uniform 13C/15N-labeling of DNA by tandem repeat amplification
Werner, M. H; Gupta, V; Lambert, L. J; Nagata, T, Joint work
Methods Enzymol., 338: 283-304, 2001, Refereed

Industrial Property Rights

特願2009-072932, Hsp70を有効成分として含有するHIV-1感染症治療剤

Awards

24 Sep. 2019
日本生物物理学会, 日本生物物理学会若手招待講演賞
In-cell NMR法を用いたヒト生細胞内核酸の構造およびダイナミクスの評価, Japan, Japan society
山置佑大, 永田崇, 清石彩華, 三宅雅之, 片平正人

2000
The Rockefeller University, The Rockefeller University Presidential Fellowship

2001
U.S. Department, U.S. Department of Energy Scholarship

2001
Leukemia Research Foundation, Leukemia Research Foundation Postdoctoral Fellowship Award

2002
Leukemia Research Foundation, Leukemia Research Foundation Postdoctoral Fellowship Award

External funds: Kakenhi

Elucidation of the principles of formation of the Alzheimer's disease-related complex using nucleotide and peptide tools
Grant-in-Aid for Scientific Research (C)
Basic Section 43020:Structural biochemistry-related
Kyoto University
永田崇
From 01 Apr. 2020, To 31 Mar. 2024, Granted
アミロイドβ;プリオン;アプタマー;NMR;構造;AFM
https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-20K06524/

Development of AFM-based quadruplex DNA detection method using data science technology
Grant-in-Aid for Scientific Research (C)
Basic Section 43020:Structural biochemistry-related
Yokohama National University
田中陽一郎
From 01 Apr. 2020, To 31 Mar. 2024, Granted
AFM;G-quadruplex;データサイエンス;機械学習;NMR;四重鎖DNA;SPM
https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-20K06504/

Mechanism of the formation of a translational repression complex that plays a role in the proliferation of cancer and stem cells and molecular basis of drug discovery
Grant-in-Aid for Scientific Research (C)
Kyoto University
Takashi Nagata
From 01 Apr. 2017, To 31 Mar. 2021, Project Closed
Musashi;RNA;NMR;AFM;RNA結合;核酸結合;DNAオリガミ
https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-17K07307/

Low-cost degradation of azo dyes using the artifitial multi-domain enzymes immobilized on the sheet.
Grant-in-Aid for Scientific Research (C)
Health Sciences University of Hokkaido
Masataka HORIUCHI
From 01 Apr. 2017, To 31 Mar. 2021, Project Closed
アゾレダクターゼ;アゾ色素;タンパク質工学;アフィニティークロマトグラフィー;固定化酵素;カードラン;GRP-tag;ハイブリッド酵素;水質改善;融合タンパク質;プロテインライゲーション;蛋白質;酵素反応;バイオテクノロジー;分子機械;環境技術
https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-17K05936/

機能性核酸の細胞内動的構造解析とＤＮＡ変換酵素のスライディングの活写
Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
Complex systems
Kyoto University
永田崇
From 01 Apr. 2017, To 31 Mar. 2019, Project Closed
APOBEC;in-cell NMR;AFM;スライディング;核酸;NMR;DNAオリガミ
https://kaken.nii.ac.jp/grant/KAKENHI-PUBLICLY-17H05878/

Development of functional RNA whose activity of trapping a protein switches on/off for intra- and extracellular conditions
Grant-in-Aid for Challenging Exploratory Research
Kyoto University
Masato Katahira
From 01 Apr. 2016, To 31 Mar. 2018, Project Closed
RNAアプタマー;Tat蛋白質;スイッチング;NMR;4重鎖;カリウムイオン;Ｔａｔ蛋白質;ＮＭＲ;４重鎖;機能性核酸;構造変化;FRET;構造遷移;機能性RNA
https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-16K14678/

ＤＮＡ変換酵素のスライディングと共役した酵素活性機構の動的構造基盤の解明
Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
Complex systems
Kyoto University
永田崇
From 01 Apr. 2015, To 31 Mar. 2017, Project Closed
NMR;APOBEC;実時間計測;脱アミノ化;AFM
https://kaken.nii.ac.jp/grant/KAKENHI-PUBLICLY-15H01634/

Universal vaccine against influenza virus
Grant-in-Aid for Challenging Exploratory Research
Institute of Physical and Chemical Research
Hidehiro Fukuyama
From 01 Apr. 2014, To 31 Mar. 2016, Project Closed
ワクチン
https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-26670228/

Development of intelligent ribozyme and aptamer whose activities switch on in response to environment
Grant-in-Aid for Challenging Exploratory Research
Kyoto University
Masato Katahira
From 01 Apr. 2014, To 31 Mar. 2016, Project Closed
RNA酵素;カリウムイオン;Ｉｎ　ｃｅｌｌ　ＮＭＲ;立体構造;4重鎖;RNAアプタマー;Tatタンパク質;In cell NMR;リボザイム;４重鎖;アプタマー
https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-26650014/

Elucidation of the mechanism by which virus inhibits the function of human anti-virus enzymes and molecular basis of drug discovery
Grant-in-Aid for Scientific Research (C)
Kyoto University
Takashi Nagata
From 01 Apr. 2014, To 31 Mar. 2018, Project Closed
Vif;APOBEC;アプタマー;NMR
https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-26440026/

Structural basis of prevention by RNA aptamer of transformation of prion protein and its interaction with Ab
Grant-in-Aid for Scientific Research (B)
Kyoto University
Masato Katahira
From 01 Apr. 2013, To 31 Mar. 2016, Project Closed
Ab蛋白質;プリオン蛋白質;RNAアプタマー;機能性核酸;NMR;アミロイドβ;プリオン;機能性ＲＮＡ;アルツハイマー病;線維化;分子間相互作用;アミロイドβタンパク質;抗プリオン活性;分子認識;プリオンタンパク質;ＲＮＡアプタマー;ＮＭＲ;相互作用;プリオン病
https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-25291013/

脳の機能を妨害する天然変性蛋白質とそれを標的とするアプタマーの分子認識機構の解明
Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
Biological Sciences
Kyoto University
永田崇
From 01 Apr. 2012, To 31 Mar. 2014, Project Closed
天然変性蛋白質;アプタマー;プリオン;アミロイド;NMR
https://kaken.nii.ac.jp/grant/KAKENHI-PUBLICLY-24113710/

Towards the molecular basis of the ligand-binding mechanism and drug-discovery of TAM receptor tyrosine kinases
Grant-in-Aid for Scientific Research (C)
Kyoto University
Takashi NAGATA
From 28 Apr. 2011, To 31 Mar. 2015, Project Closed
TAM受容体;NMR;糖鎖修飾
https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-23570146/

Structural analysis of A1 protein-telomere-telomerase complex, and development of inhibition of telomerase
Grant-in-Aid for Scientific Research (B)
Kyoto University;Yokohama City University
Masato KATAHIRA
From 01 Apr. 2009, To 31 Mar. 2012, Project Closed
テロメア;テロメラーゼ;A1タンパク質;癌;デコイ;生物物理;タンパク質;NMR;分子認識;立体構造;RNA;複合体;テロメレース;DNA
https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-21370047/

Molecular basis for the formation of translational repression complex that regulates stem cell differentiation
Grant-in-Aid for Scientific Research (C)
Yokohama City University
Takashi NAGATA
From 01 Apr. 2008, To 31 Mar. 2011, Project Closed
Musashi;翻訳抑制;幹細胞;分化制御;RNA結合タンパク質;NMR;RBD;溶液構造;神経幹細胞
https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-20570111/

低温地域に特化した持続的グルコース生産システムの創成
Grant-in-Aid for Scientific Research (C)
Basic Section 41050:Environmental agriculture-related
Health Sciences University of Hokkaido
堀内正隆
From 01 Apr. 2022, To 31 Mar. 2026, Granted
ハイブリッド酵素;セルラーゼ;セルロース;好冷菌;タンパク質工学;グルコース生産;結晶性セルロース
https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-22K05939/

Development of an RNA aptamer that inhibits the protease degradation pathway conducted by HIV
Grant-in-Aid for Scientific Research (C)
Basic Section 43020:Structural biochemistry-related
Kyoto University
永田崇
From 01 Apr. 2023, To 31 Mar. 2026, Granted
HIV-1;Vif;RNAアプタマー;NMR;構造
https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-23K05664/

External funds: others

植物ウィルスのRNAiサプレッサー２ｂに対する阻害剤開発を目指した構造生物学アプローチ
財団法人横浜学術教育振興財団・研究助成
From 01 Jun. 2007, To 31 May 2008
永田　崇

ヒト内在性HIV制御因子とHIVアクセサリー蛋白質を標的とした抗HIV薬の創製基盤
財団法人横浜学術教育振興財団・研究助成
From 01 Jun. 2010, To 31 May 2011
永田　崇

Innovative designing for therapeutic agonists using single domain antibody(VHH)
AMED
From 01 Apr. 2018, To 31 Mar. 2023
高折晃史

Last Updated :2024/11/26

Education

Teaching subject(s)

From 01 Apr. 2024, To 31 Mar. 2025
Essentials of Basic Physical Chemistry
N359, Spring, Institute for Liberal Arts and Sciences, 2

From 01 Apr. 2024, To 31 Mar. 2025
Advanced Energy Science
Y402, Fall, Institute for Liberal Arts and Sciences, 2

From 01 Apr. 2024, To 31 Mar. 2025
Structural Energy Bioscience
3289, Spring, Graduate School of Energy Science, 2

From 01 Apr. 2024, To 31 Mar. 2025
Fundamental Energy Science
3211, Spring, Graduate School of Energy Science, 2

From 01 Apr. 2023, To 31 Mar. 2024
Essentials of Basic Physical Chemistry
N359, Spring, Institute for Liberal Arts and Sciences, 2

From 01 Apr. 2023, To 31 Mar. 2024
Structural Energy Bioscience
3289, Spring, Graduate School of Energy Science, 2

From 01 Apr. 2023, To 31 Mar. 2024
Fundamental Energy Science
3211, Spring, Graduate School of Energy Science, 2

From 01 Apr. 2022, To 31 Mar. 2023
Fundamental Energy Science
3211, Spring, Graduate School of Energy Science, 2

From 01 Apr. 2022, To 31 Mar. 2023
Essentials of Basic Physical Chemistry
N359, Spring, Institute for Liberal Arts and Sciences, 2

From 01 Apr. 2022, To 31 Mar. 2023
Structural Energy Bioscience
3289, Spring, Graduate School of Energy Science, 2

From Apr. 2015, To Mar. 2016
Fundamental Energy Science
Spring, エネルギー科学研究科

From Apr. 2015, To Mar. 2016
Structural Energy Bioscience
Spring, エネルギー科学研究科

From Apr. 2016, To Mar. 2017
Essentials of Basic Physical Chemistry
Spring, 全学共通科目

From Apr. 2016, To Mar. 2017
Fundamental Energy Science
Spring, エネルギー科学研究科

From Apr. 2016, To Mar. 2017
Structural Energy Bioscience
Spring, エネルギー科学研究科

From Apr. 2017, To Mar. 2018
Essentials of Basic Physical Chemistry
Spring, 全学共通科目

From Apr. 2017, To Mar. 2018
Fundamental Energy Science
Spring, エネルギー科学研究科

From Apr. 2017, To Mar. 2018
Structural Energy Bioscience
Spring, エネルギー科学研究科

From Apr. 2018, To Mar. 2019
Essentials of Basic Physical Chemistry
Spring, 全学共通科目

From Apr. 2018, To Mar. 2019
Fundamental Energy Science
Spring, エネルギー科学研究科

From Apr. 2018, To Mar. 2019
Structural Energy Bioscience
Spring, エネルギー科学研究科

From Apr. 2019, To Mar. 2020
Essentials of Basic Physical Chemistry
Spring, 全学共通科目

From Apr. 2019, To Mar. 2020
Fundamental Energy Science
Spring, エネルギー科学研究科

From Apr. 2019, To Mar. 2020
Structural Energy Bioscience
Spring, エネルギー科学研究科

From Apr. 2020, To Mar. 2021
Essentials of Basic Physical Chemistry
Spring, 全学共通科目

From Apr. 2020, To Mar. 2021
Fundamental Energy Science
Spring, エネルギー科学研究科

From Apr. 2020, To Mar. 2021
Structural Energy Bioscience
Spring, エネルギー科学研究科

From Apr. 2021, To Mar. 2022
Essentials of Basic Physical Chemistry
Spring, 全学共通科目

Student achievements: Awards

平成29年度京都大学エネルギー理工学研究所表彰　学生賞
万里(博士課程3年生), 京都大学エネルギー理工学研究所, 17 Feb. 2017

The Best Student Oral/Poster Award
万里(博士課程3年), 7th Asia Pacific NMR Symposium, Bangalore, India, 2017.2.16-19, 16 Feb. 2017

第54回日本生物物理学会年会ポスター賞
万里(博士課程3年), 第54回日本生物物理学会年会, 25 Nov. 2016

ISNAC Outstanding Poster Award in 2016
山置佑大, The 43rd International Symposium on Nucleic Acids Chemistry, Kumamoto. 2016.9.27-29, 28 Sep. 2016

平成27年度京都大学エネルギー理工学研究所表彰　学生賞
神庭圭佑, 京都大学エネルギー理工学研究所, 04 Mar. 2016

Best Presentation Award
Meng-I Lin, Ajou-Kyoto Joint Symposium on Energy Science, Swon, Korea, 28 Jan. 2016

第4回全体合宿会議若手招待講演
神庭圭佑, 新学術領域研究「理論と実験による柔らかな分子系の機能の科学」, 26 Nov. 2015

第54回NMR討論会　若手ポスター賞・太陽日酸賞
神庭圭佑, 日本核磁気共鳴学会, 07 Nov. 2015

平成27年度第1回若手研究者渡航費助成金平成27年度第1回若手研究者渡航費助成金
神庭圭佑, 日本核磁気共鳴学会, 13 Aug. 2015

平成26年度京都大学エネルギー理工学研究所表彰　学生賞
山置佑大, 京都大学エネルギー理工学研究所, 06 Mar. 2015

若手研究者海外派遣プログラム
神庭圭佑, 新学術領域研究「理論と実験による柔らかな分子系の機能の科学」, 24 Aug. 2014

第１６回日本ＲＮＡ学会優秀発表賞
山置佑大, 日本ＲＮＡ学会, 06 Aug. 2014

優秀ポスター賞
山置佑大, 第15回若手NMR研究会, 11 Jul. 2014

ISNAC Outstanding Poster Award in 2013
真嶋　司, The 40th International Symposium on Nucleic Acids Chemistry, 15 Nov. 2013

平成24年度京都大学エネルギー理工学研究所表彰　学生賞
真嶋　司, 京都大学エネルギー理工学研究所, 01 Mar. 2013

第１４回日本ＲＮＡ学会年会優秀発表賞
真嶋　司, 日本ＲＮＡ学会, 20 Jul. 2012

Last Updated :2024/11/26

Administration

School management (title, position)

From 01 Apr. 2021, To 31 Mar. 2023
組換えＤＮＡ実験安全委員会委員

Faculty management (title, position)

From 01 Jan. 2024
エネルギー理工学研究所講演企画委員会委員

From 01 Apr. 2024
エネルギー理工学研究所自己点検・評価委員会ＷＧ委員

From 01 Jan. 2024, To 31 Dec. 2024
京都大学宇治キャンパス公開2024実行委員会

From 01 Apr. 2024, To 31 Mar. 2026
環境安全保健機構低温物質管理部門寒剤供給専門小委員会委員

From 01 Apr. 2023
エネルギー理工学研究所研究支援部技術支援室長

From 01 Apr. 2023
エネルギー理工学研究所男女共同参画推進委員会委員

From 01 Apr. 2022, To 31 Mar. 2024
環境安全保健機構低温物質管理部門寒剤供給専門小委員会委員

From 01 Jan. 2013, To 31 Dec. 2013
エネルギー理工学研究所講演企画委員会委員

From 01 Apr. 2013, To 31 Mar. 2015
低温物質科学研究センター寒剤供給管理運営委員会

From 01 Apr. 2013, To 31 Mar. 2018
エネルギー理工学研究所産業利用課題選定委員会委員

From 01 Apr. 2013, To 31 Mar. 2015
エネルギー理工学研究所情報セキュリティ委員会委員

From 16 May 2013
エネルギー理工学研究所安全衛生委員会委員

From 16 May 2013
エネルギー理工学研究所将来構想検討委員会委員

From 01 Apr. 2014, To 31 Mar. 2015
エネルギー理工学研究所附属エネルギー複合機構研究センター研究計画委員会委員

From 01 Jan. 2015, To 31 Dec. 2015
エネルギー理工学研究所講演企画委員会委員

From 01 Apr. 2015, To 30 Jun. 2016
低温物質科学研究センター寒剤供給専門委員会

From 01 Apr. 2015, To 31 Mar. 2017
エネルギー理工学研究所中期目標・中期計画ＷＧ委員

From 01 Jul. 2016, To 31 Mar. 2018
環境安全保健機構低温物質管理部門寒剤供給専門小委員会

From 01 Apr. 2017, To 31 Mar. 2021
エネルギー理工学研究所エネルギー産業利用推進室

From 01 Apr. 2018, To 31 Mar. 2020
環境安全保健機構低温物質管理部門寒剤供給専門小委員会

From 01 Apr. 2018, To 31 Mar. 2021
エネルギー理工学研究所共同利用・共同研究計画委員会委員

From 01 Apr. 2019
エネルギー理工学研究所研究支援部環境安全管理室

From 01 Apr. 2020, To 31 Mar. 2022
環境安全保健機構低温物質管理部門寒剤供給専門小委員会

From 01 Apr. 2020
エネルギー理工学研究所附属エネルギー複合機構研究センター研究計画委員会・予算委員会委員

From 01 Jan. 2015, To 31 Dec. 2015
京都大学宇治キャンパス公開2015実行委員会

From 01 Apr. 2015, To 31 Mar. 2017
京都大学宇治地区化学物質管理委員会

From 01 Apr. 2017, To 31 Mar. 2018
京都大学宇治事業場衛生委員会

From 01 Apr. 2017, To 31 Mar. 2019
京都大学宇治地区化学物質管理委員会

From 01 Apr. 2017, To 31 Mar. 2018
宇治地区総合環境安全管理センター運営委員会

From 01 Apr. 2019, To 31 Mar. 2021
京都大学宇治地区化学物質管理委員会

From 01 Apr. 2021, To 31 Mar. 2023
京都大学組換えDNA実験安全委員会　委員

From 01 Oct. 2019
エネルギー理工学研究所情報セキュリティ委員会委員

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Nagata, Takashi

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