Basic Information

Affiliated programs (koza)

• Graduate School of Energy Science, エネルギー基礎科学専攻 エネルギー物質科学講座, 准教授

Professional Memberships

• THE SPECTROSCOPICAL SOCIETY OF JAPAN
• THE BIOPHYSICAL SOCIETY OF JAPAN
• THE NUCLEAR MAGNETIC RESONANCE SOCIETY OF JAPAN
• THE RNA SOCIETY OF JAPAN
• PROTEIN SCIENCE SOCIETY OF JAPAN
• THE MOLECULAR BIOLOGY SOCIETY OF JAPAN
• The Biophysical Society

Academic Degree

• 修士（工学）(横浜国立大学)
• 博士（工学）(横浜国立大学)

Academic Resume (Graduate Schools)

• 横浜国立大学, 大学院工学研究科物質工学専攻博士課程後期, 修了
• 横浜国立大学, 大学院工学研究科物質工学専攻博士課程前期, 修了

Academic Resume (Undergraduate School/Majors)

• 横浜国立大学, 工学部物質工学科, 卒業

Research History

• From Jun. 2013, To Present

  Kyoto University, Institute of Advanced Energy, Associate professor
• From Sep. 2011, To May 2013

  Kyoto University, Institute of Advanced Energy, Assistant professor
• From Apr. 2009, To Aug. 2011

  Yokohama City University, 生命ナノシステム科学研究科, Assistant professor
• From Apr. 2008, To Mar. 2009

  Yokohama City University, International College of Arts and Sciences, Assistant professor
• From Apr. 2006, To Mar. 2008

  Yokohama City University, International College of Arts and Sciences, Assistant professor
• From Apr. 2004, To Mar. 2006

  RIKEN, Genomic Science Research Center, Researcher
• From Aug. 2002, To Mar. 2004

  RIKEN, Genomic Science Research Center, Research Associate
• From Aug. 1998, To Jul. 2002

  The Rockefeller University, USA, Laboratory of Biophysics, Research Associate
• From Apr. 1992, To Mar. 1994

  三菱化学生命科学研究所, 生物工学研究部門, 特別研究生

Profile

• Profile

  To help advance the Sustainable Development Goals (SDGs), I aim to contribute through a structural life-science approach. My research centers on two main themes.

  
  

  In pursuit of a decarbonized society, I explore and characterize enzymes that depolymerize or transform woody biomass, elucidate their structure–function relationships, and engineer them for improved performance. I also investigate key platform chemicals derived from woody biomass and develop efficient pretreatment strategies.

  
  

  In the area of biomedical science, I study the structure–function relationships of proteins and nucleic acids involved in cancer, leukemia, neurological disorders, and infectious diseases. My goal is to elucidate the molecular mechanisms underlying disease onset and to establish a molecular basis for drug discovery.

  
  

  On a daily basis, I conduct NMR experiments and analyze three-dimensional structures and molecular dynamics. I also enjoy using AI-based modeling and docking—almost like playing a game.

Language of Instruction

• English

ID,URL

• ORCID ID

  0000-0002-3733-2709

• J-Global ID

  201201058893463242

• Researcher number

  10415250

researchmap URL

• https://researchmap.jp/nagatat81

Research

Research Topics, Overview of the research

• Research Topics

  Using Structural Biology approaches to investigate the issues faced in energy and life/medical sciences

• Overview of the research

  I am tackling the challenges involved in the production of next-generation energy, functional biopolymer, and chemical product materials from woody biomass, as well as in elucidation of the molecular mechanisms of cancer and viral diseases so as to construct the molecular fundamentals to develop new drugs. My research combines the methods used in the fields of NMR spectroscopy, genetic engineering, protein, and nucleic acid sciences, cell biology, and physical chemistry. My researches are dedicated to contribute to the achievement of SDG. My researches are dedicated to contributing to the achievement of SDG.

Research Interests

• molecular docking
• pharmacophore
• HBV
• yeast surface display
• X-ray difraction
• FUS
• triplex
• FAE
• feruloyl esterase
• base-pair opening
• Dynamics of nucleic acids
• in-cell NMR
• lytic polysaccharide monooxygenase
• LPMO
• NMR
• NMR
• liquid-liquid phase separation
• LLPS
• DNA origami
• 蛋白質構造
• 核酸構造
• 立体構造
• 蛋白質-核酸相互作用
• 発現制御
• 翻訳制御
• 転写後調節
• transcription factor
• 天然変性
• 四重鎖
• グアニン四重鎖
• Gカルテット
• フォールディング
• スライディング
• HIV
• アミロイド
• Musashi
• APOBEC
• プリオン
• 進化分子工学
• nanobody
• VHH
• SELEX
• アプタマー
• 核酸医薬
• バイオマス
• woody biomass
• plant biomass
• lignin carbohydrate complex
• LCC
• リグノセルロース
• リグニン
• ヘミセルロース
• fungi
• glucuronoyl esterase
• マンガンペルオキシダーゼ
• cellulase
• 腐朽菌
• RNAアプタマー
• RNA工学
• 酵素
• 蛋白質工学
• 安定同位体
• ノンコーディングRNA
• 非コードRNA
• RNA結合蛋白質
• 蛋白質-蛋白質相互作用
• 核酸-蛋白質相互作用

Research Areas

• Life sciences, Functional biochemistry
• Life sciences, Pharmaceuticals - analytical and physicochemistry
• Nanotechnology/Materials, Biochemistry
• Nanotechnology/Materials, Molecular biochemistry
• Nanotechnology/Materials, Analytical chemistry
• Life sciences, Biophysics
• Life sciences, Molecular biology
• Life sciences, Structural biochemistry

Papers

• 1H, 13C, and 15N resonance assignments and solution structure of the CID domain of SR-related- and CTD-associated factor 8 (SCAF8)

  Kuwasako, K.; Dang, W.; Muto, Y.; He, F.; Takahashi, M.; Tsuda, K.; Nagata, T.; Tanaka, A.; Kobayashi, N.; Kigawa, T.; Guntert, P.; Shirouzu, M.; Yokoyama, S.

  Biomolecular NMR Assignments, in press, Oct. 2025, Peer-reviewed

  
• In-cell NMR spectra of chemically unmodified RNA at physiological temperature with extended lifetime through RNase inhibitor cocktail in living human cells

  Omar Eladl; Yudai Yamaoki; Takashi Nagata; Masato Katahira

  Scientific Reports, 17 Oct. 2025, Peer-reviewed

  
• Positive correlation between structural disorder of the HIV-1 Gag N-terminal segment and progeny virus particle formation

  Takaaki Koma; Osamu Kotani; Keisuke Kamba; Kei Miyakawa; Taiki Morita; Hiromi Nakamura; Masaru Yokoyama; Naoya Doi; Tomoyuki Kondo; Takashi Nagata; Akihide Ryo; Akio Adachi; Akira Ono; Masato Katahira; Masako Nomaguchi; Hironori Sato

  Journal of Virology, 16 Sep. 2025, Peer-reviewed

  
• Engineering a hypoxia-tolerant Saccharomyces cerevisiae for rapid ethanol production via co-utilization of glucose and acetic acid and redox-enhanced flocculation

  Sadat Mohamed Rezk Khattab; Mohammed Oksh Mohammed Mousa; Takashi Nagata; Takashi Watanabe; Masato Katahira

  Sustainable Energy Fuels, 28 May 2025, Peer-reviewed

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• A physical picture of liquid-liquid phase separation of proteins

  Masahiro Kinoshita; Tomohiko Hyashi; Yuka Nakamura; Akira Yoshimori; Masato Katahira; Takashi Nagata

  Journal of Molecular Liquids, 15 Apr. 2025, Peer-reviewed, Last author

  
• Recent progress of in-cell NMR of nucleic acids in living human cells.

  Yudai Yamaoki; Takashi Nagata; Tomoki Sakamoto; Masato Katahira

  Biophysical reviews, Apr. 2020

  
• Observation of nucleic acids inside living human cells by in-cell NMR spectroscopy.

  Yudai Yamaoki; Takashi Nagata; Tomoki Sakamoto; Masato Katahira

  Biophysics and physicobiology, 2020

  
• Selection and characterization of aptamers targeting the Vif-CBFβ-ELOB-ELOC-CUL5 complex

  Kazuyuki Kumagai; Keisuke Kamba; Takuya Suzuki; Yuto Sekikawa; Chisato Yuki; Michiaki Hamada; Kayoko Nagata; Akifumi Takaori-Kondo; Li Wan; Masato Katahira; Takashi Nagata; Taiichi Sakamoto

  The Journal of Biochemistry, 13 May 2024, Peer-reviewed, Corresponding author

  
• ¹H, ¹³C, and ¹⁵N resonance assignments and solution structure of the N-terminal divergent caplonin homology (NN-CH) domain of human intraflagellar transport protein 54

  Kanako Kuwasako; Weirong Dang; Fahu He; Mari Takahashi; Kengo Tsuda; Takashi Nagata; Akiko Tanaka; Naohiro Kobayashi; Takanori Kigawa; Peter Gunter; Mikamo Shirouzu; Shigeyuki Yokoyama; Yutaka Muto

  Biomolecular NMR Assignments, 29 Mar. 2024, Peer-reviewed

  
• Structure-based characterization and improvement of an enzymatic activity of Acremonium alcalophilum feruloyl esterase

  Apisan Phienluphon; Keiko Kondo; Bunzo Mikami; Kenneth Sze Kai Teo; Kaori Saito; Takashi Watanabe; Takashi Nagata; Masato Katahira

  ACS Sustainable Chemistry & Engineering, 22 Feb. 2024, Peer-reviewed, Corresponding author

  
• Structural insights into the interaction between the C-terminal-deleted BH3-like motif peptide of hepatitis B virus X protein and Bcl-xL

  Hideki Kusunoki; Taiichi Sakamoto; Naohiro Kobayashi; Toshiyuki Kohno; Kaori Wakamatsu; Takashi Nagata

  Biochemistry, 05 Mar. 2024, Peer-reviewed, Corresponding author

  
• Fluoride Ion in Alcohols: Isopropanol vs. Hexafluoroisopropanol

  Nozomi Yoneda; Haruka Iyama; Takashi Nagata; Masato Katahira; Yoshiki Ishii; Kohei Tada; Kazuhiko Matsumoto; Rika Hagiwara

  The Journal of Physical Chemistry Letters, 05 Feb. 2024, Peer-reviewed

  
• Enhancing Bioethanol Production from Rice Straw through Environmentally Friendly Delignification Using Versatile Peroxidase

  Kenneth Sze Kai Teo; Keiko Kondo; Sadat Mohamed Rezk Khattab; Takashi Watanabe; Takashi Nagata; Masato Katahira

  Journal of Agricultural and Food Chemistry, 30 Jan. 2024, Peer-reviewed, Corresponding author

  
• Boosting Sugarcane Trash Decomposition: Synergistic action and proximity effect of Xylanase and Feruloyl Esterase co-displayed on the cell surface of Pichia pastoris (Komagataella phaffi)

  Apisan Phienluphon; Keiko Kondo; Takashi Nagata; Masato Katahira

  Sustainable Energy & Fuels, 17 Jan. 2024, Peer-reviewed, Corresponding author

  
• Understanding manganese peroxidase-catalyzed conversion of the lignin structure and its application for the polymerization of Kraft lignin

  TEO, KENNETH SZE KAI; Kondo, Keiko; Watanabe, Takashi; Nagata, Takashi; Katahira, Masato

  ACS Sustainable Chemistry & Engineering, Jan. 2024, Peer-reviewed, Corresponding author

  
• Uniform¹³C/¹⁵N-labeling of DNA by tandem repeat amplification

  Werner, M.H.; Gupta, V.; Lambert, L.J.; Nagata, T.

  Methods in Enzymology, 2001

  
• Direct inhibition of human APOBEC3 deaminases by HIV-1 Vif independent of the proteolysis pathway

  Keisuke Kamba; Li Wan; Satoru Unzai; Ryo Morishita; Akifumi Takaori-Kondo; Takashi Nagata; Masato Katahira

  Biophysical Journal, Feb. 2024, Peer-reviewed, Corresponding author

  
• NMR characterization of the structure of the intrinsically disordered region of human origin recognition complex subunit 1, hORC1, and of its interaction with G-quadruplex DNAs

  Afaf Eladl; Yudai Yamaoki; Keisuke Kamba; Shoko Hoshina; Haruka Horinouchi; Keiko Kondo; Shou Waga; Takashi Nagata; Masato Katahira

  Biochemical and Biophysical Research Communications, Oct. 2023, Peer-reviewed

  
• Structural insights into the molecular mechanisms of substrate recognition and hydrolysis by feruloyl esterase from Aspergillus sydowii

  Apisan Phienluphon; Keiko Kondo; Bunzo Mikami; Takashi Nagata; Masato Katahira

  International Journal of Biological Macromolecules, 30 Sep. 2023, Peer-reviewed, Corresponding author

  
• Direct evidence of α ester linkages between lignin and glucuronoxylan that reveal the robust heteropolymeric complex in plant cell walls

  Hiroshi Nishimura; Kazuma Nagata; Takashi Nagata; Masato Katahira; Takashi Watanabe

  08 Feb. 2022

  
• Enhanced depolymerization of beech wood lignin and its removal with peroxidases through continuous separation of lignin fragments

  Kenneth Sze Kai Teo; Keiko Kondo; Kaori Saito; Yu Iseki; Takashi Watanabe; Takashi Nagata; Masato Katahira

  Green Chemistry, Sep. 2023, Peer-reviewed, Corresponding author

  
• Complex Formation of an RNA Aptamer with a Part of HIV-1 Tat through Induction of Base Triples in Living Human Cells Proven by In-Cell NMR

  Omar Eladl; Yudai Yamaoki; Keiko Kondo; Takashi Nagata; Masato Katahira

  International Journal of Molecular Sciences, 22 May 2023, Peer-reviewed

  
• Detection of interaction between an RNA aptamer and its target compound in living human cells using 2D in-cell NMR

  Eladl, O; Yamaoki, Y; Kondo, K; Nagata, T; Katahira, M

  Chemical Communications, 29 Nov. 2022, Peer-reviewed, Corresponding author

  
• Shedding light on the base-pair opening dynamics of nucleic acids in living human cells

  Yamaoki, Y; Nagata, T; Kondo, K; Sakamoto, T; Takami, S; Katahira, M

  Nature Communications, 29 Nov. 2022, Peer-reviewed, Corresponding author

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• Chemical shift assignments of a fusion protein comprising the C-terminal-deleted hepatitis B virus X protein BH3-like motif peptide and Bcl-xL

  Hideki Kusunoki; Isao Hamaguchi; Naohiro Kobayashi; Takashi Nagata

  Biomolecular NMR Assignments, 31 Aug. 2022, Peer-reviewed, Corresponding author

  
• Degradation of Lignin by Infrared Free Electron Laser

  Takayasu Kawasaki; Heishun Zen; Takeshi Sakai; Yoske Sumitomo; Kyoko Nogami; Ken Hayakawa; Toyonari Yaji; Toshiaki Ohta; Takashi Nagata; Yasushi Hayakawa

  Polymers, 14 Jun. 2022, Peer-reviewed

  
• 1H, 13C, and 15N resonance assignments and solution structures of the KH domain of human ribosome binding factor A, mtRbfA, involved in mitochondrial ribosome biogenesis

  Kanako Kuwasako; Sakura Suzuki; Nobukazu Nameki; Masayuki Takizawa; Mari Takahashi; Kengo Tsuda; Takashi Nagata; Satoru Watanabe; Akiko Tanaka; Naohiro Kobayashi; Takanori Kigawa; Peter Güntert; Mikako Shirouzu; Shigeyuki Yokoyama; Yutaka Muto

  Biomolecular NMR Assignments, 06 Jun. 2022, Peer-reviewed

  
• Functional and Structural Characterizations of Lytic Polysaccharide Monooxygenase, Which Cooperates Synergistically with Cellulases, from Ceriporiopsis subvermispora

  Huyen Nguyen; Keiko Kondo; Yusei Yagi; Yu Iseki; Nagi Okuoka; Takashi Watanabe; Bunzo Mikami; Takashi Nagata; Masato Katahira

  ACS Sustainable Chemistry & Engineering, 04 Jan. 2022, Peer-reviewed, Corresponding author

  
• 1H, 13C and 15N resonance assignments and solution structures of the two RRM domains of Matrin-3

  Fahu He; Kanako Kuwasako; Masayuki Takizawa; Mari Takahashi; Kengo Tsuda; Takashi Nagata; Satoru Watanabe; Akiko Tanaka; Naohiro Kobayashi; Takanori Kigawa; Peter Güntert; Mikako Shirouzu; Shigeyuki Yokoyama; Yutaka Muto

  Biomolecular NMR Assignments, 16 Nov. 2021, Peer-reviewed

  
• Glyme-Lithium Bis(trifluoromethylsulfonyl)amide Super-concentrated Electrolytes: Salt Addition to Solvate Ionic Liquids Lowers Ionicity but Liberates Lithium Ions

  Kitada A; Koujin Y; Shimizu M; Kawata K; Yoshinaka C; Saimura M; Nagata T; Katahira M; Fukami K; Murase K

  Journal of The Electrochemical Society, 03 Sep. 2021, Peer-reviewed

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• Detection of parallel and antiparallel DNA triplex structures in living human cells using in-cell NMR

  Sakamoto T; Yamaoki Y; Nagata T; Katahira M

  Chemical Communications, 17 Jun. 2021, Peer-reviewed

  
• Non-coding RNA suppresses FUS aggregation caused by mechanistic shear stress on pipetting in a sequence-dependent manner

  Nesreen Hamad; Ryoma Yoneda; Masatomo So; Riki Kurokawa; Takashi Nagata; Masato Katahira

  Scientific Reports, 04 May 2021, Peer-reviewed

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• Investigation of the Interaction of Human Origin Recognition Complex Subunit 1 with G-Quadruplex DNAs of Human c-myc Promoter and Telomere Regions

  Afaf Eladl; Yudai Yamaoki; Shoko Hoshina; Haruka Horinouchi; Keiko Kondo; Shou Waga; Takashi Nagata; Masato Katahira

  International Journal of Molecular Sciences, 27 Mar. 2021, Peer-reviewed

  
• An Ammonium Solvate Ionic Liquid

  Kio Kawata; Atsushi Kitada; Kazuhiro Fukami; Masayuki Saimura; Takashi Nagata; Masato Katahira; Kuniaki Murase

  Journal of The Electrochemical Society, 17 Feb. 2021, Peer-reviewed

  
• Ligand Exchange Conduction of Lithium Ion in a Pentaglyme-Lithium Bis(trifluoromethylsulfonyl)amide Super-Concentrated Electrolyte

  Atsushi Kitada; Kio Kawata; Masahiro Shimizu; Masayuki Saimura; Takashi Nagata; Masato Katahira; Kazuhiro Fukami; Kuniaki Murase

  Journal of the Electrochemical Society, 14 Jan. 2021, Peer-reviewed

  
• Nucleus accumbens-associated protein 1 binds DNA directly through the BEN domain in a sequence-specific manner

  Nakayama N; Sakashita G; Nagata T; Kobayashi N; Yoshida H; Park SY; Nariai Y; Kato H; Obayashi E; Nakayama K; Kyo S; Urano T

  Biomedicine, doi:10.3390/biomedicines8120608, 14 Dec. 2020, Peer-reviewed

  
• Proton conduction in hydronium solvate ionic liquids affected by ligand shape

  Kio Kawata; Atsushi Kitada; Naoki Tsuchida; Masayuki Saimura; Takashi Nagata; Masato Katahira; Kazuhiro Fukami; Kuniaki Murase

  Physical Chemistry Chemical Physics, 02 Dec. 2020, Peer-reviewed

  
• Development and structural determination of an anti-PrPC aptamer that blocks pathological conformational conversion of prion protein

  Tsukasa Mashima; Joon-Hwa Lee; Yuji O. Kamatari; Tomohiko Hayashi; Takashi Nagata; Fumiko Nishikawa; Satoshi Nishikawa; Masahiro Kinoshita; Kazuo Kuwata; Masato Katahira

  Scientific Reports, Dec. 2020, Peer-reviewed

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• NMR Elucidation of Nonproductive Binding Sites of Lignin Models with Carbohydrate-Binding Module of Cellobiohydrolase I

  Tokunaga Y; Nagata T; Kondo K; Katahira M; Watanabe T

  Biotechnology for Biofuels, 07 Oct. 2020, Peer-reviewed

  
• Structural evaluation and protium-deuterium exchange in 1-ethyl-3-methylimidazolium halide-ethylene glycol mixtures

  Chen Z; Tonouchi Y; Matsumoto K; Tsuzuki S; Nagata T; Katahira M; Hagiwara R

  Journal of Fluorine Chemistry, Oct. 2020, Peer-reviewed

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• 1H, 13C and 15N resonance assignment of the YTH domain of YTHDC2

  Fahu He; Ryuta Endo; Kanako Kuwasako; Mari Takahashi; Kengo Tsuda; Takashi Nagata; Satoru Watanabe; Akiko Tanaka; Naohiro Kobayashi; Takanori Kigawa; Peter Güntert; Mikako Shirouzu; Shigeyuki Yokoyama; Yutaka Muto

  Biomolecular NMR Assignments, in press, 15 Sep. 2020, Peer-reviewed

  
• Complete NMR assignment and analysis of molecular structural changes of β–O–4 lignin oligomer model compounds in organic media with different water content

  Yuki Tokunaga; Takashi Nagata; Keiko Kondo; Masato Katahira; Takashi Watanabe

  Holzforschung, 28 Aug. 2020, Peer-reviewed

  
• Direct visualization of the conformational change of FUS/TLS upon binding to promoter-associated non-coding RNA

  Hamad N; Watanabe H; Uchihashi T; Kurokawa R; Nagata T; Katahira M

  Chemical Communications, Jul. 2020, Peer-reviewed

  
• Fluoride Ion Interactions in Alkali-Metal Fluoride–Diol Complexes

  Yuto Tonouchi; Kazuhiko Matsumoto; Takashi Nagata; Masato Katahira; Rika Hagiwara

  Inorganic Chemistry, 04 May 2020, Peer-reviewed

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• Suppression of Fast Proton Conduction by Dilution of a Hydronium Solvate Ionic Liquid: Localization of Ligand Exchange

  Kawase K; Kitada A; Tsuchida N; Saimura N; Nagata T; Katahira M; Fukami K; Murase K

  Journal of The Electrochemical Society, 26 Feb. 2020, Peer-reviewed

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• RNA sequence and length contribute to RNA-induced conformational change of TLS/FUS

  Hamad N; Mashima T; Yamaoki Y; Kondo K; Yoneda R; Oyoshi T; Kurokawa R; Nagata T; Katahira M

  Scientific Reports, doi: 10.1038/s41598-020-59496-0, 14 Feb. 2020, Peer-reviewed

  
• How Does the Recently Discovered Peptide MIP Exhibit Much Higher Binding Affinity than an Anticancer Protein p53 for an Oncoprotein MDM2?

  Tatsuya Yamada; Tomohiko Hayashi; Simon Hikiri; Naohiro Kobayashi; Hiroshi Yanagawa; Mitsunori Ikeguchi; Masato Katahira; Takashi Nagata; Masahiro Kinoshita

  Journal of Chemical Information and Modeling, 26 Aug. 2019, Peer-reviewed

  
• An insight into the dependence of the deaminase rate of human APOBEC3F on the length of single-stranded DNA, which is affected by the concentrations of APOBEC3F and single-stranded DNA

  L. Wan; K. Kamba; T. Nagata; M. Katahira

  Biochimica et Biophysica Acta, Apr. 2019, Peer-reviewed, Invited, Corresponding author

  
• Identification of key residues for activities of atypical glutathione S-transferase of Ceriporiopsis subvermispora, a selective degrader of lignin in woody biomass, by crystallography and functional mutagenesis

  O.W.H. Wan; B. Mikami; N. Saka; K. Kondo; M.I. Lin; T. Nagata; M. Katahira

  International Journal of Biological Macromolecules, Mar. 2019, Peer-reviewed, Corresponding author

  
• The anti-prion RNA aptamer R12 disrupts the Alzheimer’s disease-related complex between prion and amyloid β

  M. Iida; T. Mashima; Y. Yamaoki; M. So; T. Nagata; M. Katahira

  FEBS J, doi: 10.1111/febs.14819, Mar. 2019, Peer-reviewed

  
• Structure of a serine-type glutathione S-transferase of Ceriporiopsis subvermispora and identification of the enzymatically important non-canonical residues by functional mutagenesis

  O.W.H. Wan; B. Mikami; N. Saka; K. Kondo; T. Nagata; M. Katahira

  Biochem. Biophys. Res. Commun., doi: 10.1016/j.bbrc.2019.01.076., Feb. 2019, Peer-reviewed, Corresponding author

  
• NMR Analysis on Molecular Interaction of Lignin with Amino Acid Residues of Carbohydrate-Binding Module from Trichoderma reesei Cel7A

  Tokunaga, Y; Nagata, T; Suetomi, T; Oshiro, S; Kondo, K; Katahira, M; Watanabe, T

  Scientific Reports, doi: 10.1038/s41598-018-38410-9., Feb. 2019, Peer-reviewed

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• Versatility of RNA-Binding Proteins in Living Cells

  Riki Kurokawa; Akihide Takeuchi; Nobuyuki Shiina; Masato Katahira; Takefumi Yamashita; Yoko Matsuno; Keisuke Hitachi; Shinsuke Ishigaki; Nesreen Haamad; Ryoma Yoneda; Naomi Ueda; Kei Iida; Motoyasu Hosokawa; Masatoshi Hagiwara; Mamiko Iida; Tsukasa Mashima; Yudai Yamaoki; Masatomo So; Takashi Nagata; Gen Sobue; Keiko Kondo; Hiroki Watanabe; Takayuki Uchihashi

  Biomedical Sciences, 2019, Peer-reviewed

  
• Noise peak filtering in multi-dimensional NMR spectra using convolutional neural networks.

  Naohiro Kobayashi; Yoshikazu Hattori; Takashi Nagata; Shoko Shinya; Peter Güntert; Chojiro Kojima; Toshimichi Fujiwara

  Bioinformatics (Oxford, England), 15 Dec. 2018, Peer-reviewed

  
• Classification of fungal glucuronoyl esterases (FGEs), and characterization of two new FGEs from Ceriporiopsis subvermispora and Pleurotus eryngii

  M.I. Lin; A. Hiyama; K. Kondo; T. Nagata; M. Katahira

  Applied Microbiology and Biotechnology, Nov. 2018, Peer-reviewed, Corresponding author

  
• Paritally Naked Fluoride in Solvate Ionic Liquids

  Z. Chen; Y. Tonouchi; K. Matsumoto; M. Saimura; R. Atkin; T. Nagata; M. Katahira; R. Hagiwara

  The Journal of Physical Chemistry Letters, doi: 10.1021/acs.jpclett.8b03117., Nov. 2018, Peer-reviewed

  
• Characterization of the glutathione S-transferases that belong to the GSTFuA class in Ceriporiopsis subvermispora: Implications in intracellular detoxification and metabolism of wood-derived compounds

  Wan Hasnidah Wan Osman; Meng-I Lin; Keiko Kondo; Takashi Nagata; Masato Katahira

  International Journal of Biological Macromolecules, 01 Jul. 2018, Peer-reviewed, Corresponding author

  
• High yield production of fungal manganese peroxidases by E. coli through soluble expression, and examination of the activities

  Meng-I Lin; Takashi Nagata; Masato Katahira

  Protein Expression and Purification, 01 May 2018, Peer-reviewed, Corresponding author

  
• Utilizing NMR to study RNA- and compound-binding mechanisms of Musashi-1, a stem/progenitor cell marker in various normal and cancer cells

  T. Nagata

  Integrated Cancer Science and Therapeutics, Apr. 2018, Peer-reviewed, Invited, Corresponding author

  
• Direct evidence for α ether linkage between lignin and carbohydrates in wood cell walls

  H. Nishimura; A. Kamiya; T. Nagata; M. Katahira; T. Watanabe

  Scientific Reports, doi: 10.1038/s41598-018-24328-9., Apr. 2018, Peer-reviewed

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• The first successful observation of in-cell NMR signals of DNA and RNA in living human cells

  Yudai Yamaoki; Ayaka Kiyoishi; Masayuki Miyake; Fumi Kano; Masayuki Murata; Takashi Nagata; Masato Katahira

  Physical Chemistry Chemical Physics, 07 Feb. 2018, Peer-reviewed

  
• The C-terminal cytidine deaminase domain of APOBEC3G itself undergoes intersegmental transfer for a target search, as revealed by real-time NMR monitoring

  Keisuke Kamba; Takashi Nagata; Masato Katahira

  Physical Chemistry Chemical Physics, 07 Feb. 2018, Peer-reviewed, Corresponding author

  
• Influence of the DNA sequence/length and pH on deaminase activity, as well as the roles of the amino acid residues around the catalytic center of APOBEC3F

  Li Wan; Takashi Nagata; Masato Katahira

  Physical Chemistry Chemical Physics, 07 Feb. 2018, Peer-reviewed

  
• Plastic roles of phenylalanine and tyrosine residues of TLS/FUS in complex formation with the G-quadruplexes of telomeric DNA and TERRA

  Keiko Kondo; Tsukasa Mashima; Takanori Oyoshi; Ryota Yagi; Riki Kurokawa; Naohiro Kobayashi; Takashi Nagata; Masato Katahira

  SCIENTIFIC REPORTS, Feb. 2018, Peer-reviewed

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• Multiplicity in Long Noncoding RNA in Living Cells

  Riki Kurokawa; Reina Komiya; Takanori Oyoshi; Yoko Matsuno; Hidenori Tani; Masato Katahira; Keisuke Hitachi; Yuji Iwashita; Takefumi Yamashita; Keiko Kondo; Ryoma Yoneda; Yudai Yamaoki; Naomi Ueda; Tsukasa Mashima; Naohiro Kobayashi; Takashi Nagata; Ayaka Kiyoishi; Masayuki Miyake; Fumi Kano; Masayuki Murata; Nesreen Hamad; Kohei Sasaki; Naoyuki Shoji

  Biomedical Sciences, 2018, Peer-reviewed

  
• Characterisation of an aptamer against Runt domain of AML1 (RUNX1) by NMR and mutational analyses

  K. Takada; R. Amano; Y. Nomura; Y. Tanaka; S. Sugiyama; T. Nagata; M. Katahira; Y. Nakamura; T. Kozu; T. Sakamoto

  FEBS Open Bio, Jan. 2018, Peer-reviewed

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• A hydronium solvate ionic liquid: Ligand exchange conduction driven by labile solvation

  Atsushi Kitada; Kohei Kintsu; Shun Takeoka; K. Fukami; Masayuki Saimura; Takashi Nagata; Masato Katahira; Kuniaki Murase

  Journal of the Electrochemical Society, 2018, Peer-reviewed

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• Mechanism of protein-RNA recognition: Analysis based on the statistical mechanics of hydration

  Tomohiko Hayashi; Tomoaki Matsuda; Takashi Nagata; Masato Katahira; Masahiro Kinoshita

  Physical Chemistry Chemical Physics, 2018, Peer-reviewed

  
• A hydronium solvate ionic liquid: Facile synthesis of air-stable ionic liquid with strong brønsted acidity

  Atsushi Kitada; Shun Takeoka; Kohei Kintsu; Kazuhiro Fukami; Masayuki Saimura; Takashi Nagata; Masato Katahira; Kuniaki Murase

  Journal of the Electrochemical Society, 2018, Peer-reviewed

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• Conjugation of two RNA aptamers improves binding affinity to AML1 Runt domain

  Yusuke Nomura; Kaori Yamazaki; Ryo Amano; Kenta Takada; Takashi Nagata; Naohiro Kobayashi; Yoichiro Tanaka; Junichi Fukunaga; Masato Katahira; Tomoko Kozu; Yoshikazu Nakamura; Yuji Haishima; Hidetaka Torigoe; Taiichi Sakamoto

  JOURNAL OF BIOCHEMISTRY, Dec. 2017, Peer-reviewed

  
• Observation by real-time NMR, and interpretation of length- and location-dependent deamination activity of APOBEC3B

  L. Wan; T. Nagata; R. Morishita; A. Takaori-Kondo; M. Katahira

  ACS Chemical Biology, DOI: 10.1021/acschembio.7b00662, 17 Nov. 2017, Peer-reviewed

  
• Backbone and side chain assignments of the second RNA-binding domain of Musashi-1 in its free form and in complex with 5-mer RNA

  Ryo Iwaoka; Takashi Nagata; Kengo Tsuda; Takao Imai; Hideyuki Okano; Naohiro Kobayashi; Masato Katahira

  BIOMOLECULAR NMR ASSIGNMENTS, Oct. 2017, Peer-reviewed, Corresponding author

  
• Structural Insight into the Recognition of r(UAG) by Musashi-1 RBD2, and Construction of a Model of Musashi-1 RBD1-2 Bound to the Minimum Target RNA

  Ryo Iwaoka; Takashi Nagata; Kengo Tsuda; Takao Imai; Hideyuki Okano; Naohiro Kobayashi; Masato Katahira

  MOLECULES, Jul. 2017, Peer-reviewed, Corresponding author

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• Development of an RNA aptamer that acquires binding capacity against HIV-1 Tat protein via G-quadruplex formation in response to potassium ions

  Yudai Yamaoki; Takashi Nagata; Tsukasa Mashima; Masato Katahira

  CHEMICAL COMMUNICATIONS, Jul. 2017, Peer-reviewed, Corresponding author

  
• Molecular Landscape of the Ribosome Pre-initiation Complex during mRNA Scanning: Structural Role for eIF3c and Its Control by eIF5

  Eiji Obayashi; Rafael E. Luna; Takashi Nagata; Pilar Martin-Marcos; Hiroyuki Hiraishi; Chingakham Ranjit Singh; Jan Peter Erzberger; Fan Zhang; Haribabu Arthanari; Jacob Morris; Riccardo Pellarin; Chelsea Moore; Ian Harmon; Evangelos Papadopoulos; Hisashi Yoshida; Mahmoud L. Nasr; Satoru Unzai; Brytteny Thompson; Eric Aube; Samantha Hustak; Florian Stengel; Eddie Dagraca; Asokan Ananbandam; Philip Gao; Takeshi Urano; Alan G. Hinnebusch; Gerhard Wagner; Katsura Asano

  CELL REPORTS, Mar. 2017, Peer-reviewed, Lead author

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• Structure, Dynamics, and Interaction of p54(nrb)/NonO RRM1 with 5 ' Splice Site RNA Sequence

  Jean-Baptiste Duvignaud; Mikael Bedard; Takashi Nagata; Yutaka Muto; Shigeyuki Yokoyama; Stephane M. Gagne; Michel Vincent

  BIOCHEMISTRY, May 2016, Peer-reviewed

  
• Characterization of the Deamination Coupled with Sliding along DNA of Anti-HIV Factor APOBEC3G on the Basis of the pH-Dependence of Deamination Revealed by Real-Time NMR Monitoring

  Keisuke Kamba; Takashi Nagata; Masato Katahira

  FRONTIERS IN MICROBIOLOGY, Apr. 2016, Peer-reviewed, Corresponding author

  
• Accurate and molecular-size-tolerant NMR quantitation of diverse components in solution

  Hideyasu Okamura; Hiroshi Nishimura; Takashi Nagata; Takanori Kigawa; Takashi Watanabe; Masato Katahira

  SCIENTIFIC REPORTS, Feb. 2016, Peer-reviewed

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• The binding specificity of Translocated in LipoSarcoma/FUsed in Sarcoma with lncRNA transcribed from the promoter region of cyclin D1

  Ryoma Yoneda; Shiho Suzuki; Tsukasa Mashima; Keiko Kondo; Takashi Nagata; Masato Katahira; Riki Kurokawa

  CELL AND BIOSCIENCE, Jan. 2016, Peer-reviewed

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• K+-responsive off-to-on switching of hammerhead ribozyme through dual G-quadruplex formation requiring no heating and cooling treatment

  Yudai Yamaoki; Takashi Nagata; Tsukasa Mashima; Masato Katahira

  BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, Dec. 2015, Peer-reviewed, Corresponding author

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• Catalytic Analysis of APOBEC3G Involving Real-Time NMR Spectroscopy Reveals Nucleic Acid Determinants for Deamination

  Keisuke Kamba; Takashi Nagata; Masato Katahira

  PLOS ONE, Apr. 2015, Peer-reviewed, Corresponding author

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• Augmentation of multiple protein kinase activities associated with secondary imatinib resistance in gastrointestinal stromal tumors as revealed by quantitative phosphoproteome analysis

  Kayoko Nagata; Takao Kawakami; Yoichi Kurata; Yayoi Kimura; Yusuke Suzuki; Takashi Nagata; Yuji Sakuma; Yohei Miyagi; Hisashi Hirano

  JOURNAL OF PROTEOMICS, Feb. 2015, Peer-reviewed

  
• Boosting of activity enhancement of K+-responsive quadruplex hammerhead ribozyme

  Yudai Yamaoki; Tsukasa Mashima; Takashi Nagata; Masato Katahira

  CHEMICAL COMMUNICATIONS, 2015, Peer-reviewed, Corresponding author

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• Novel RNA recognition motif domain in the cytoplasmic polyadenylation element binding protein 3

  Kengo Tsuda; Kanako Kuwasako; Takashi Nagata; Mari Takahashi; Takanori Kigawa; Naohiro Kobayashi; Peter Guentert; Mikako Shirouzu; Shigeyuki Yokoyama; Yutaka Muto

  PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, Oct. 2014, Peer-reviewed

  
• Structural Basis for Inhibition of the MDM2:p53 Interaction by an Optimized MDM2-Binding Peptide Selected with mRNA Display

  Takashi Nagata; Kie Shirakawa; Naohiro Kobayashi; Hirokazu Shiheido; Noriko Tabata; Yuko Sakuma-Yonemura; Kenichi Horisawa; Masato Katahira; Nobuhide Doi; Hiroshi Yanagawa

  PLOS ONE, Oct. 2014, Peer-reviewed, Lead author, Corresponding author

  
• Quantitative Analysis of Location- and Sequence-Dependent Deamination by APOBEC3G Using Real-Time NMR Spectroscopy

  Ayako Furukawa; Kenji Sugase; Ryo Morishita; Takashi Nagata; Tsutomu Kodaki; Akifumi Takaori-Kondo; Akihide Ryo; Masato Katahira

  ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, Feb. 2014, Peer-reviewed

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• Binding of an RNA aptamer and a partial peptide of a prion protein: crucial importance of water entropy in molecular recognition

  Tomohiko Hayashi; Hiraku Oshima; Tsukasa Mashima; Takashi Nagata; Masato Katahira; Masahiro Kinoshita

  NUCLEIC ACIDS RESEARCH, 2014, Peer-reviewed

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• 1H, 13C, and 15N resonance assignments of the dsRBDs of mouse RNA helicase A

  Takashi Nagata; Kengo Tsuda; Naohiro Kobayashi; Peter Güntert; Shigeyuki Yokoyama; Yutaka Muto

  Biomolecular NMR Assignments, Apr. 2013, Peer-reviewed, Lead author, Corresponding author

  
• Anti-prion activity of an RNA aptamer and its structural basis.

  Tsukasa Mashima; Fumiko Nishikawa; Yuji O Kamatari; Hiromichi Fujiwara; Masayuki Saimura; Takashi Nagata; Tsutomu Kodaki; Satoshi Nishikawa; Kazuo Kuwata; Masato Katahira

  Nucleic acids research, Jan. 2013, Peer-reviewed

  
• NMR study of xenotropic murine leukemia virus-related virus protease in a complex with amprenavir

  Ayako Furukawa; Hideyasu Okamura; Ryo Morishita; Satoko Matsunaga; Naohiro Kobayashi; Takahisa Ikegami; Tsutomu Kodaki; Akifumi Takaori-Kondo; Akihide Ryo; Takashi Nagata; Masato Katahira

  BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, Aug. 2012, Peer-reviewed, Corresponding author

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• Solution structures of the double-stranded RNA-binding domains from RNA helicase A

  Takashi Nagata; Kengo Tsuda; Naohiro Kobayashi; Mikako Shirouzu; Takanori Kigawa; Peter Guentert; Shigeyuki Yokoyama; Yutaka Muto

  PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, Jun. 2012, Peer-reviewed, Lead author

  
• Structure of Musashi1 in a complex with target RNA: the role of aromatic stacking interactions

  Takako Ohyama; Takashi Nagata; Kengo Tsuda; Naohiro Kobayashi; Takao Imai; Hideyuki Okano; Toshio Yamazaki; Masato Katahira

  NUCLEIC ACIDS RESEARCH, Apr. 2012, Peer-reviewed, Corresponding author

  
• Intelligent' ribozyme whose activity is altered in response to K plus as a result of quadruplex formation

  Takashi Nagata; Yu Sakurai; Yukari Hara; Tsukasa Mashima; Tsutomu Kodaki; Masato Katahira

  FEBS JOURNAL, Apr. 2012, Peer-reviewed, Lead author

  
• Structures of the first and second double-stranded RNA-binding domains of human TAR RNA-binding protein

  Seisuke Yamashita; Takashi Nagata; Masahito Kawazoe; Chie Takemoto; Takanori Kigawa; Peter Guentert; Naohiro Kobayashi; Takaho Terada; Mikako Shirouzu; Motoaki Wakiyama; Yutaka Muto; Shigeyuki Yokoyama

  PROTEIN SCIENCE, Jan. 2011, Peer-reviewed, Lead author

  
• Solution structures of the trihelix DNA-binding domains of the wild-type and a phosphomimetic mutant of Arabidopsis GT-1: Mechanism for an increase in DNA-binding affinity through phosphorylation

  Takashi Nagata; Emi Niyada; Natsuki Fujimoto; Yuuya Nagasaki; Kazuaki Noto; Youhei Miyanoiri; Jun Murata; Kazuyuki Hiratsuka; Masato Katahira

  PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, Nov. 2010, Peer-reviewed, Lead author

  
• Unusual Thermal Disassembly of the SPFH Domain Oligomer from Pyrococcus horikoshii

  Yohta Kuwahara; Satoru Unzai; Takashi Nagata; Yoko Hiroaki; Hideshi Yokoyama; Ikuo Matsui; Takahisa Ikegami; Yoshinori Fujiyoshi; Hidekazu Hiroaki

  BIOPHYSICAL JOURNAL, Oct. 2009, Peer-reviewed

  
• Structure and real-time monitoring of the enzymatic reaction of APOBEC3G which is involved in anti-HIV activity.

  A. Furukawa; T. Nagata; A. Matsugami; Y. Habu; R. Sugiyama; F. Hayashi; N. Kobayashi; S. Yokoyama; H. Takaku; M. Katahira

  Nucleic acids symposium series, Sep. 2009, Peer-reviewed

  
• Structure, interaction and real-time monitoring of the enzymatic reaction of wild-type APOBEC3G

  Ayako Furukawa; Takashi Nagata; Akimasa Matsugami; Yuichirou Habu; Ryuichi Sugiyama; Fumiaki Hayashi; Naohiro Kobayashi; Shigeyuki Yokoyama; Hiroshi Takaku; Masato Katahira

  EMBO JOURNAL, Feb. 2009, Peer-reviewed

  
• Elucidation of the mode of interaction in the UP1telomerase RNAtelomeric DNA ternary complex which serves to recruit telomerase to telomeric DNA and to enhance the telomerase activity

  Takashi Nagata; Yusuke Takada; Asami Ono; Kayoko Nagata; Yuki Konishi; Takeshi Nukina; Manami Ono; Akimasa Matsugami; Ayako Furukawa; Natsuki Fujimoto; Hirokazu Fukuda; Hitoshi Nakagama; Masato Katahira

  NUCLEIC ACIDS RESEARCH, Dec. 2008, Peer-reviewed, Lead author

  
• N- and C-terminal fragments of a globular protein constructed by elongation of modules as a units associated for functional complementation

  Toru Tsuji; Takashi Nagata; Hiroshi Yanagawa

  JOURNAL OF BIOCHEMISTRY, Oct. 2008, Peer-reviewed

  
• NMR assignments and the identification of the secondary structure of the anti-retroviral cytidine deaminase

  Furukawa A; Nagata T; Habu Y; Sugiyama R; Hayashi F; Yokoyama S; Takaku H; Katahira M

  Nucleic acids symposium series, Sep. 2008, Peer-reviewed

  
• Structural analysis of Musashi-RNA complex on the basis of long-range structural information.

  T. Ohyama; A. Furukawa; T. Mashima; T. Sugiyama; S. Ohgara; T. Yamazaki; T. Imai; H. Okano; T. Nagata; M. Katahira

  Nucleic acids symposium series, Sep. 2008, Peer-reviewed

  
• The RRM domain of poly(A)-specific ribonuclease has a noncanonical binding site for mRNA cap analog recognition

  Takashi Nagata; Sakura Suzuki; Ryuta Endo; Mikako Shirouzu; Takaho Terada; Makoto Inoue; Takanori Kigawa; Naohiro Kobayashi; Peter Guntert; Akiko Tanaka; Yoshihide Hayashizaki; Yutaka Muto; Shigeyuki Yokoyama

  NUCLEIC ACIDS RESEARCH, Aug. 2008, Peer-reviewed, Corresponding author

  
• Interactions with RNA/DNA of proteins involved in the regulation of transcription, translation and telomere elongation.

  T. Ohyama; A. Furukawa; T. Miyoshi; Y. Takada; S. Ohgara; K. Hiratsuka; T. Imai; H. Okano; H. Nakagama; T. Nagata; M. Katahira

  Nucleic acids symposium series, Nov. 2007, Peer-reviewed

  
• Origin of higher affinity to RNA of the N-terminal RNA-binding domain than that of the C-terminal one of a mouse neural protein, Musashi1, as revealed by comparison of their structures, modes of interaction, surface electrostatic potentials, and backbone dynamics

  Y Miyanoiri; H Kobayashi; T Imai; M Watanabe; T Nagata; S Uesugi; H Okano; M Katahira

  JOURNAL OF BIOLOGICAL CHEMISTRY, Oct. 2003, Peer-reviewed

  
• Structure of the C-terminal RNA-binding domain of hnRNP D0 (AUF1), its interactions with RNA and DNA, and change in backbone dynamics upon complex formation with DNA

  M Katahira; Y Miyanoiri; Y Enokizono; G Matsuda; T Nagata; F Ishikawa; S Uesugi

  JOURNAL OF MOLECULAR BIOLOGY, Aug. 2001, Peer-reviewed

  
• Functional mutagenesis of AML1/RUNX1 and PEBP2 beta/CBF beta define distinct, non-overlapping sites for DNA recognition and heterodimerization by the Runt domain

  T Nagata; MH Werner

  JOURNAL OF MOLECULAR BIOLOGY, Apr. 2001, Peer-reviewed, Lead author

  
• Molecular insights into the origin of the acute human leukemias revealed from the three-dimensional structure and sub-cellular localization of AML1.

  MH Werner; T Nagata; V Gupta; M Goger; BT Chait; A Sali; WY Kim; K Shigesada; Y Ito

  CLINICAL CANCER RESEARCH, Nov. 1999, Peer-reviewed

  
• Immunoglobulin motif DNA recognition and heterodimerization of the PEBP2/CBF Runt domain

  T Nagata; V Gupta; D Sorce; WY Kim; A Sali; BT Chait; K Shigesada; Y Ito; MH Werner

  NATURE STRUCTURAL BIOLOGY, Jul. 1999, Peer-reviewed, Lead author

  
• Structure, backbone dynamics and interactions with RNA of the C-terminal RNA-binding domain of a mouse neural RNA-binding protein, Musashi1

  T Nagata; R Kanno; Y Kurihara; S Uesugi; T Imai; S Sakakibara; H Okano; M Katahira

  JOURNAL OF MOLECULAR BIOLOGY, Mar. 1999, Peer-reviewed, Lead author

  
• Structure and interactions with RNA of the N-terminal UUAG-specific RNA-binding domain of hnRNP D0

  T Nagata; Y Kurihara; G Matsuda; J Saeki; T Kohno; Y Yanagida; F Ishikawa; S Uesugi; M Katahira

  JOURNAL OF MOLECULAR BIOLOGY, Mar. 1999, Peer-reviewed, Lead author

  
• Structural properties and RNA-binding activities of two RNA recognition motifs of a mouse neural RNA-binding protein, mouse-Musashi-1

  Y Kurihara; T Nagata; T Imai; A Hiwatashi; M Horiuchi; S Sakakibara; M Katahira; H Okano; S Uesugi

  GENE, Feb. 1997, Peer-reviewed, Lead author

  
• Mouse-Musashi-1, a neural RNA-Binding protein highly enriched in the mammalian CNS stem cell

  S Sakakibara; T Imai; K Hamaguchi; M Okabe; J Aruga; K Nakajima; D Yasutomi; T Nagata; Y Kurihara; S Uesugi; T Miyata; M Ogawa; K Mikoshiba; H Okano

  DEVELOPMENTAL BIOLOGY, Jun. 1996, Peer-reviewed

  
• MM2 MOLECULAR MECHANICS STUDIES OF PERIPLANONE-B AND NITROXIDES - EMPIRICAL-METHODS TO EVALUATE THE STRETCHING (K(S)) AND BENDING (K(B)) FORCE-CONSTANTS OF THE MM2 FORCE-FIELD

  K SAKAKIBARA; H KAWAMURA; T NAGATA; JZ REN; M HIROTA; K SHIMAZAKI; T CHUMAN

  BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN, Oct. 1994, Peer-reviewed

  

Misc.

• Biophysical analysis of the interaction between aptamers and AML1 Runt domain

  Taiichi Sakamoto; Ryo Amano; Yusuke Nomura; Yoichiro Tanaka; Kenji Yamagishi; Masato Katahira; Takashi Nagata

  The International Chemical Congress of Pacific Basin Societies 2025 Honolulu, 2025.12.15-20 2025年12月15日, 15 Dec. 2025, Last author

  
• Biophysical analysis of the interaction between aptamers and human IgG

  Taiichi Sakamoto; Takuya Hasegawa; Yusuke Nomura; Masataka, Horiuchi; Hisae Yoshida; Tomoki, Sakamoto; Masato Katahira; Takashi Nagata; Kenji Yamagishi

  The International Chemical Congress of Pacific Basin Societies 2025 Honolulu, 2025.12.15-20, 15 Dec. 2025

  
• 繊毛内タンパク質輸送装置のサブユニットIntraagellar Transport Protein 54（IFT54）のNN- CHドメインの溶液構造：チューブリン結合ドメインとの構造比較

  桑迫 香奈子; Dang Weirong; He Fahu; 高橋 真梨; 津田 健吾; 永田 崇; 田仲 昭子; 小林 直宏; 木川 隆則; Güntert Peter; 白水 美香子; 横山 茂之; 武藤 裕

  第48回日本分子生物学会年会, パシフィコ横浜, 2025.12.3-5, 03 Dec. 2025

  
• Development of a Secretion-Based Production and Immobilization System for GRP-tag Fusion Proteins Using Diverse Curdlan Carriers in Mammalian Cells

  堀内 正隆; 堀内 留美; 坂本 泰一; 永田 崇; 落合 正則

  第48回日本分子生物学会年会, パシフィコ横浜, 2025.12.3-5, 03 Dec. 2025

  
• αシヌクレインを標的とするRNAアプタマーの構造と相互作用のNMR解析

  Xiang Li; Yudai Yamaoki; Takashi Nagata; Kazuma Murakami; Masato Katahira

  第48回日本分子生物学会年会, パシフィコ横浜, 2025.12.3-5, Dec 3, 2025, 03 Dec. 2025

  
• Characterization of Biomolecular Dynamics by NMR under Macromolecular Crowding

  Shohei YAMAMOTO; Yudai YAMAOKI; Keiko KONDO; Takashi NAGATA; Masato KATAHIRA

  第48回日本分子生物学会年会, パシフィコ横浜, 2025.12.3-5, Dec 3, 2025, 03 Dec. 2025

  
• NMR-based structural characterization of a parallel-stranded DNA–RNA hybrid G- quadruplex

  Kensei HORIE; Yudai YAMAOKI; Taisei MASUNAGA; Chihiro; NAKAYAMA; Keiko KONDO; Takashi NAGATA; Masato KATAHIRA

  第48回日本分子生物学会年会, パシフィコ横浜, 2025.12.3-5, 03 Dec. 2025

  
• Structural characterization of a DNA–RNA hybrid G-quadruplex and its interactions with ligands

  Yudai Yamaoki; Kensei Horie; Taisei Masunaga; Chihiro Nakayama; Keiko Kondo; Takashi Nagata; Masato Katahira

  第64回NMR討論会, 沖縄科学技術大学院大学（OIST）講堂, 2025.11.26-28, 26 Nov. 2025

  
• Structural insights into a DNA–RNA hybrid G- quadruplex and its interactions with ligands

  Yudai Yamaoki; Kensei Horie; Taisei Masunaga; Chihiro Nakayama; Keiko Kondo; Takashi Nagata; Masato Katahira

  The 52nd International Symposium on Nucleic Acids Chemistry, The Toyama International Conference Center, 2025.11.12-14, 12 Nov. 2025

  
• The inhibition of interaction between VβBCC complex and A3G by RNA aptamer

  Tomohiro Shinozaki; Kentaro Tozawa; Kazuyuki Kumagai; Keisuke Kamba; Li Wan; Masato Katahira; Takashi Nagata; Taiichi Sakamoto

  The 52nd International Symposium on Nucleic Acids Chemistry, The Toyama International Conference Center, 2025.11.12-14, 12 Nov. 2025

  
• HIV-1のVifタンパク質を含む複合体を標的としたaptamerのNMR解析

  山本春香; 熊谷紀志; 神庭圭佑; 万里; 片平正人; 永田崇; 坂本泰一

  第72回日本ウイルス学会学術集会, アクトシティ浜松, 2025.10.28-30, 28 Oct. 2025

  
• RNAとDNAの物理化学的特性の違いに由来するRNA aptamerとRNA-DNA Chimera aptamerの作用機序の違い

  長谷川拓矢; 関口真裕; 阪本智樹; 堀内正隆; 石川岳志; 片平正人; 永田崇; 山岸賢司; 坂本泰一

  2025年度日本生化学会関東支部例会, 産業技術総合研究所つくばセンター共用講堂, 2025.6.14, 14 Jun. 2025

  
• Hideki Kusunoki, Toshiyuki Tanaka, Hajime Wakamatsu, Takashi Nagata

  Research on aggregation of; HBV; rotein mutan; eptide; interaction with hos; rotein Bcl-xL.

  The 25th Annual Meeting of the Protein Science Society of Japan, Trends in Structural Bioinformatics and Drug Discovery, 2025.6.18-20, 20 Jun. 2025, Corresponding author

  
• HIV-1 Vif Protein Complex Inhibits Human APOBEC3 Deaminases Independent of the Ubiquitin-Proteasome Pathway

  K. Kamba; L. Wan; K. Tozawa; S. Unzai; R. Morishita; A. Kakaori-Kondo; T. Nagata; M. Katahira

  The 30th International Conference on Magnetic Resonance in Biological Systems (ICMRBS 2024), Seoul, Republic of Korea, August 2024.8.18-23, Aug. 2024

  
• Engineering Saccharomyces cerevisiae for Enhanced and Fast Ethanol Production through Co-Utilization of Acetic Acid and Glucose with Hypoxic Tolerance and Improved Flocculation

  Mohamed Oksh Mohamed Mousa; Sadat Mohamed; Rezk Khattab; Takashi Nagata; Takashi Watanabe; Masato Katahira

  第75回日本木材学会大会, 仙台国際センター, 2025.3.19-2025.3.21, Mar. 2025

  
• Structural Insights into Feruloyl Esterases and Their Application in Lignocellulosic Biomass Deconstruction

  Apisan Phienluphon; Keiko Kondo; Bunzo Mikami; Kaori Saito; Takashi Watanabe; Takashi Nagata; Masato Katahira

  第75回日本木材学会大会, 仙台国際センター, 2025.3.19-2025.3.21, Mar. 2025

  
• Enhancing Cellulose Degradation of Sugarcane Trash: The Boosting Effect of LPMO9 from Wood Rot Fungus on

  Y. Yagi; E. Oga; K. Kondo; S. M.; R. Khattab; H. Okano; T. Watanabe; T. Nagata; M. Katahira

  The 15th International Symposium of Advanced Energy Science, 宇治黄檗プラザ, 2024.12.10-13, Dec. 2024

  
• The binding of human origin recognition complex subunit 1 to various G-quadruplex structure

  Shou Waga; Yudai Yamaoki; Kensei Horie; Tomoki Sakamoto; Chihiro Nakayama; Taisei Masunaga; Keiko Kondo; Takashi Nagata; Masato Katahira

  The 15th International Symposium of Advanced Energy Science, 宇治黄檗プラザ, 2024.12.10-13, Dec. 2024

  
• The analysis of translational and rotational motion of bio-molecules in nucleic acid condensates by NMR

  Riki Kurokawa; Yudai Yamaoki; Makoto Shimizu; Aika Kawakami; Keiko Kondo; Tomoki Sakamoto; Takashi Nagata; Masato Katahira

  The 15th International Symposium of Advanced Energy Science, 宇治黄檗プラザ, 2024.12.10-13, Dec. 2024

  
• In-cell NMR study on structure, dynamics, and interaction with ligands of nucleic acids in living human cells

  Yudai Yamaoki; Takashi Nagata; Tomoki Sakamoto; Omar Eladl; Keiko Kondo; Masato Katahira

  4th Switzerland-Japan Biomolecular Chemistry Symposium (SJBCS2024), 2024.11.07-08, Nov. 2024

  
• In-cell NMR法によるヒト生細胞内における核酸の構造、ダイナミクス、リガンド相互作用の解析

  山置佑大; 永田崇; 近藤敬子; 阪本知樹; Eladl Omar; 片平正人

  第47回日本分子生物学会年会, 福岡国際会議場, 2024.11.27-29, Nov. 2024, Invited

  
• DNA-RNAハイブリッドグアニン四重鎖の構造およびリガンドとの相互作用の分光学的解析

  堀江健生; 増永泰成; 山置佑大; 近藤敬子; 中山千尋; 永田崇; 片平正人

  第24回若手NMR研究会, タカオネ（東京都八王子市）, 2024.09.02-04, Sep. 2024

  
• Investigation of the structure and interaction of an RNA aptamer targeting α-synuclein using NMR

  Xiang Li; Yudai Yamaoki; Omar Eladl; Takashi Nagata; Kazuma Murakami; Masato Katahira

  第24回若手NMR研究会, タカオネ（東京都八王子市）, 2024.09.02-04, Sep. 2024

  
• In-cell NMR study on structure, dynamics, and ligand interactions of nucleic acids in living human cells

  Yudai Yamaoki; Takashi Nagata; Tomoki Sakamoto; Omar Eladl; Keiko Kondo; Masato Katahira

  XXV International Round Table on Nucleosides, Nucleotides and Nucleic Acids (IRT2024),Katsushika Campus, Tokyo University of Science, 2024.09.03-06, Sep. 2024

  
• In-cell NMR法によるヒト細胞内におけるHIV Tat捕捉RNAアプタマーと標的分子との相互作用の解析

  山置佑大; Eladl Omar; 近藤敬子; 永田崇; 片平正人

  第18回バイオ関連化学シンポジウム, つくば国際会議場, 2024.09.12-14, Sep. 2024

  
• Structural characterization and utilization of fungal feruloyl esterases for potential degradation of the lignin-carbohydrate complex

  Apisan Phienluphon; Keiko Kondo; Bunzo Mikami; Kenneth Sze Kai Teo; Kaori Saito; Takashi Watanabe; Takashi Nagata; Masato Katahira

  2nd International Lignin Symposium, 京都府立京都学・歴彩館, 2024.9.8-10, Sep. 2024

  
• Boosting peroxidase-catalyzed lignin decomposition by applying continuous membrane isolation of lignin fragments

  Keiko Kondo; Kenneth Sze Kai Teo; Kaori Saito; Yu Iseki; Sadat Mohamed; Rezk Khattab; Takashi Watanabe; Takashi Nagata; Masato Katahira

  2nd International Lignin Symposium, 京都府立京都学・歴彩館, 2024.9.8-10, Sep. 2024

  
• Structural insight into the substrate specificity of fungal feruloyl esterases

  Apisan Phienluphon; Keiko Kondo; Bunzo Mikami; Kenneth Sze Kai Teo; Kaori Saito; Takashi Watanabe; Takashi Nagata; Masato Katahira

  第24回日本蛋白質科学会年会, 札幌コンベンションセンター, 2024.06.11-13, Jun. 2024

  
• Structure, dynamics, and interaction with ligands of nucleic acids in living human cells analyzed by in-cell NMR

  Yudai Yamaoki; Takashi Nagata; Tomoki Sakamoto; Omar Eladl; Keiko Kondo; Masato Katahira

  the 3rd International Symposium on Biofunctional Chemistry (ISBC2024), Toyoda Auditorium, Nagoya University, Nagoya, Aichi, Japan, 2024.04.24-26, Apr. 2024

  
• A DATA-DRIVEN APPROACH TO ANTIGEN-ANTIBODY COMPLEX STRUCTURE MODELING USING LABELED VHH ANTIBODIES

  Takashi Nagata; Hiroyuki Yamazaki; Ryota Maeda; Hirofumi Tsuruta; Ryotaro Tamura; Akihiro Imura

  International Conference on Learning Representations (ICLR) 2025, Singapore EXPO, 2025.4.24-28., 27 Apr. 2025, Peer-reviewed, Lead author

  
• Investigation of the structure and interaction of an RNA aptamer targeting α-synuclein using NMR

  X. Li; Y. Yamaoki; O. Eladl; T. Nagata; K. Murakami; M. Katahira

  The 15th International Symposium of Advanced Energy Science, 宇治黄檗プラザ, 2024.12.10-13, Dec. 2024

  
• Analysis of condensate of nucleic acids formed by liquid-liquid phase separation using NMR spectroscopy

  Shimizu Makoto; Aika Kawakami; Yudai Yamaoki; Keiko Kondo; Tomoki Sakamoto; Takashi Nagata; Masato Katahira

  第47回日本分子生物学会年会, 福岡国際会議場, 2024.11.27-29 2024年11月27日 2024年11月27日, 27 Nov. 2024

  
• Substrate preferences of the anti-HIV factor APOBEC3C and the effect of HIV-1 Vif-human E3 ubiquitin ligase complex on deaminase activity

  Kentaro Tozawa; Keisuke Kamba; Ryo Iwaoka; Akifumi Takaori-Kondo; Takashi Nagata; Masato Katahira

  第47回日本分子生物学会年会, 福岡国際会議場, 2024.11.27-29 2024年11月27日 2024年11月27日, 27 Nov. 2024

  
• Title: Investigation of the structure and interaction of an RNA aptamer targeting α-synuclein using NMR

  Xiang Li; Yudai Yamaoki; Omar Eladl; Takashi Nagata; Kazuma Murakami; Masato Katahira

  第47回日本分子生物学会年会, 福岡国際会議場, 2024.11.27-29 2024年11月27日, 27 Nov. 2024

  
• Hiv-1 Gag dimerization is affected by the mobility around S9 residues

  Keisuke Kamba; Taiki Morita; Osamu Kotani; Takaaki Koma; Masaru Yokoyama; Masako Nomaguchi; Hironori Sato; Takashi Nagata; Masato Katahira

  第47回日本分子生物学会年会, 福岡国際会議場, 2024.11.27-29, 27 Nov. 2024

  
• VβBCC complexを標的としたaptamerの選別と特性解析

  熊谷 紀志; 神庭 圭佑; 鈴木 拓也; 関川 湧斗; 永田 佳代子; 高折 晃史; 万 里; 片平 正人; 永田 崇; 坂本 泰一

  2024年度 日本生化学会関東支部例会, 順天堂大学 本郷・お茶の水キャンパス, 15 Jun. 2024

  
• Highly efficient decomposition of beech wood lignin by lignin peroxidase using a membrane reactor

  Kenneth Sze Kai Teo; Keiko Kondo; Kaori Saito; Yu Iseki; Takashi Watanabe; Takashi Nagata; Masato Katahira

  The 7th International KBMSS Symposium / 521st Sustainable Humanosphere Symposium, Uji, 2024.1.30, 30 Jan. 2024

  
• Structure-function relationship of fungal feruloyl esterases towards destarched wheat bran

  Apisan Phienluphon; Keiko Kondo; Bunzo Mikami; Kenneth Sze Kai Teo; Kaori Saito; Takashi Watanabe; Takashi Nagata; Masato Katahira

  The 7th International KBMSS Symposium / 521st Sustainable Humanosphere Symposium, Uji, 2024.1.30, 30 Jan. 2024

  
• Unveiling Atomic-Level Insights into the Influence of Molecular Crowding Environments on Base-Pair Opening/Closing Dynamics in Parallel DNA Triplex Structures

  Tomoki Sakamoto; Yudai Yamaoki; Takashi Nagata; Masato; Katahira

  ISNAC 2023, Miyazaki Civic Plaza, 2023.11.1-3, Nov. 2023

  
• HIV-1 Vif Directly Inhibits Human APOBEC3G Deaminase Independent of the Ubiquitin-Proteasome Pathway

  Keisuke Kamba; Li Wan; Satoru Unzai; Ryo Morishita, Akifumi; Takaori-Kondo; Takashi Nagata; Masato Katahira

  ISMAR 2023, Brisbane, 2023.8.20-25, Aug. 2023

  
• Analyzing Dynamics of Base-Pair Opening in DNA Triplex Structures under Molecular Crowding Environment

  Tomoki Sakamoto; Yudai Yamaoki; Takashi Nagata; Masato Katahira

  ISMAR 2023, Brisbane, 2023.8.20-25, Aug. 2023

  
• Direct inhibition of human APOBEC3 deaminases by HIV-1 Vif independent of the ubiquitination/degradation pathway

  Keisuke Kamba; Li Wan; Kentaro Tozawa; Satoru Unzai; Ryo Morishita; Akifumi Takaori-Kondo; Takashi Nagata; Masato Katahira

  2024 IUPAB CONGRESS + 62nd Annual Meeting of the Biophysical Society of Japan, 2024.06.24-28, Jun. 2024

  
• HIV-1 Vif-human E3 ubiquitin ligase complex affects deaminase activity of human anti-viral/ cancer related factor APOBEC3

  兎澤 賢太郎; 神庭 圭佑; 岩岡 諒; 永田 崇; 片平 正人

  第24回日本蛋白質科学会年会, 札幌コンベンションセンター, 2024.06.11-13, Jun. 2024

  
• The tyrosine residues on the substrate-binding surface of Lytic Polysacchride Monooxigeanase: their effect on the promotion of cellulose degradation

  八木 勇成; 近藤 敬子; Huyen Nguyen; 渡辺 隆司; 三上 文三; 永田 崇; 片平 正人

  第24回日本蛋白質科学会年会, 札幌コンベンションセンター, 2024.06.11-13, Jun. 2024

  
• A simple preparation method for stable isotope-labeled HBV X protein-derived peptides and an application to weak interaction systems with host proteins by NMR

  Hideki Kusunoki; Naohiro Kobayashi; Hajime Wakamatsu; Toshiyuki Tanaka; Takashi Nagata

  第24回日本蛋白質科学会年会, 札幌コンベンションセンター, 2024.06.11-13, Jun. 2024, Corresponding author

  
• In-cell NMR analysis on base-pair opening dynamics and interactions with ligands of nucleic acids in living human cells

  Yudai Yamaoki; Takashi Nagata; Tomoki Sakamoto; Omar Eladl; Keiko Kondo; Masato Katahira

  2024 IUPAB CONGRESS + 62nd Annual Meeting of the Biophysical Society of Japan, 2024.06.24-28, Jun. 2024

  
• Decomposition of sugarcane trash pulp using lytic polysaccharide monooxygenase

  八木 勇成; 近藤 敬子; Huyen Nguyen; 渡辺 隆司; 三上 文三; 永田 崇; 片平 正人

  日本農芸化学会2024年度大会, 東京農業大学, 2024.3.24-27, Mar. 2024

  
• 抗体に結合するaptamerの改変体の結合能の解析

  遠藤朱梨; 関口真裕; 阪本智樹; 堀内正隆; 石川岳志; 片平正人; 永田崇; 山岸賢司; 坂本泰一

  第46回日本分子生物学会年会, 神戸ポートアイランド, 2023.12.6-8, Dec. 2023

  
• IgGに対するRNA aptamerとChimera aptamerの構造特性の比較

  長谷川 拓矢; 阪本智樹; 関口真裕; 石川岳志; 片平正人; 永田崇; 山岸賢司; 坂本泰一

  第46回日本分子生物学会年会, 神戸ポートアイランド, 2023.12.6-8, Dec. 2023

  
• Analysis of base pair opening-closing dynamics under molecular crowding environment of triplex structure-forming DNAs

  Tomoki Sakamoto; Yudai Yamaoki; Takashi Nagata; Masato Katahira

  第46回日本分子生物学会年会, 神戸ポートアイランド, 2023.12.6-8, Dec. 2023

  
• Detection of;he;interaction between;DNA-RNA hybrid G-quadruplex structure;predicted specifically binding compou;ds using NMR

  Taisei MASUNAGA; Yudai YAMAOKI; Chihiro NAKAYAMA; Keiko KONDO; Takashi NAGATA; Masato KATAHIRA

  第46回日本分子生物学会年会, 神戸ポートアイランド, 2023.12.6-8, Dec. 2023

  
• HIV-1 Vif-human E3 ubiquitin ligase complex affects deaminase activity of human APOBEC3A and APOBEC3C

  Kentaro Tozawa; Keisuke Kamba; Ryo Iwaoka; Takashi Nagata; Masato Katahira

  第46回日本分子生物学会年会, 神戸ポートアイランド, 2023.12.6-8, Dec. 2023

  
• メンブレンリアクターを活用したリグニンペルオキシダーゼによる ブナリグニンの高効率分解

  ケンネ テオジカイ; 近藤 敬子; 齋藤 香織; 井関 優侑; 渡辺 隆司; 永田 崇; 片平 正人

  第68回リグニン討論会, シティ・ホールプラザ アオーレ長岡, 2023.11.9-10, Nov. 2023

  
• In-cell NMR study on the interaction of HIV Tat-binding RNA aptamer with its target molecule in living human cells

  Yudai Yamaoki; Omar Eladl; Keiko Kondo; Takashi Nagata; Masato Katahira

  The 62nd Annual Meeting of the Nuclear Magnetic Resonance Society of Japan (2023), Nov. 2023, Peer-reviewed

  
• Analysis of the effect of molecularly crowded environment on the base pair opening/closing dynamics of DNA triplex structure

  Tomoki Sakamoto; Yudai Yamaoki; Takashi Nagata; Masato Katahira

  The 62nd Annual Meeting of the Nuclear Magnetic Resonance Society of Japan (2023), Nov. 2023, Peer-reviewed

  
• Investigation of the internal environment of DNA droplet by NMR

  Takashi Nagata; Yudai Yamaoki; Aika Kawakami; Keiko Kondo; Tomoki Sakamoto; Masato Katahira

  The 62nd Annual Meeting of the Nuclear Magnetic Resonance Society of Japan (2023), Nov. 2023, Peer-reviewed, Lead author

  
• In-cell NMR study of the structure and interaction of an RNA aptamer targeting HIV-1 Tat within living human cells

  Omar Eladl; Yudai Yamaoki; Keiko Kondo; Takashi Nagata; Masato Katahira

  ISNAC 2023, Miyazaki Civic Plaza, 2023.11.1-3, Nov. 2023

  
• Detection of the interaction between DNA-RNA hybrid G-quadruplex structure and G-quadruplex-binding peptide using NMR

  Taisei MASUNAGA; Yudai YAMAOKI; Chihiro NAKAYAMA; Keiko KONDO; Takashi NAGATA; Masato KATAHIRA

  第61回日本生物物理学会年会, 名古屋国際会議場, 2023.11.14-16, Nov. 2023

  
• RGGYX から成る環状ペプチドの構造解析

  藤本和久; 山口朋也; 永田 崇; 片平正人; 深澤海斗; 大吉崇文

  第17回バイオ関連化学シンポジウム, 第38回生体機能関連化学シンポジウム, 第26回バイオテクノロジー部会シンポジウム, 東京理科大学野田キャンパス薬学部, 2023.9.8-10, Sep. 2023

  
• ヒト生細胞内核酸の構造ダイナミクスの in-cell NMR法による解析

  山置 佑大; 永田 崇; 近藤 敬子; 阪本 知樹; Eladl Omar; 片平 正人

  第17回バイオ関連化学シンポジウム, 第38回生体機能関連化学シンポジウム, 第26回バイオテクノロジー部会シンポジウム, 東京理科大学野田キャンパス薬学部, 2023.9.8-10, Sep. 2023

  
• Promoting effects of soluble polysaccharide monooxygenase from selective white rot fungi on saccharification of sugarcane trash

  Eri Oga; Yusei Yagi; Keiko Kondo; Hiroyuki Okano; Takashi Watanabe; Takashi Nagata; Masato Katahira

  セルロース学会第30回年次大会, 広島国際会議場, 2023.9.28-29, Sep. 2023

  
• 結晶性セルロースの分解におけるセルラーゼと選択的白色腐朽菌由来LPMO9のシナジー効果

  八木勇成; 近藤敬子; Huyen Nguyen; 井関優侑; 奥岡奈宜; 渡辺隆司; 三上文三; 永田崇; 片平正人

  セルロース学会第 29 回年次大会, 2022.7.20-22, 金沢市文化ホール, Jul. 2022

  
• The first detection of the formation of the DNA triplex structure in living human cells and an analysis of the dynamics of base pair opening under molecular crowding environment

  Tomoki Sakamoto; Yudai Yamaoki; Takashi Nagata; Masato Katahira

  第103回日本化学会2023,東京理科大学野田キャンパス, 2023.3.22-25, Mar. 2023

  
• The molecular level elucidation of a Ceriporiopsis subvermispora manganese peroxidase-catalyzed conversion of a phenolic lignin dimer

  Kenneth Sze Kai Teo; Keiko Kondo; Takashi Nagata; Masato Katahira

  第73回日本木材学会大会, 2023.3.14-16, 福岡大学・九州大学病院キャンパス, Mar. 2023

  
• Analysis of depolymerization of cellulose catalyzed by LPMO from Ceriporiopsis subvermispora

  Yu Iseki; Nagi Okuoka; Tomohiro Hashizume; Keiko Kondo; Takashi Nagata; Masato Katahira; Takashi Watanabe

  第73回日本木材学会大会, 2023.3.14-16, 福岡大学・九州大学病院キャンパス, Mar. 2023

  
• Interaction analysis between carbohydrate binding module of Trichoderma reesei Cel7A and dehydrogenation polymer

  Takaki Uchida; Yuki Tokunaga; Takashi Nagata; Keiko Kondo; Masato Katahira; Takashi Watanabe

  第73回日本木材学会大会, 2023.3.14-16, 福岡大学・九州大学病院キャンパス, Mar. 2023

  
• Co-displaying of xylanase and feruloyl esterase on the Pichia pastoris cell surface

  Apisan Phienluphon; Keiko Kondo; Takashi Nagata; Masato Katahira

  第73回日本木材学会大会, 2023.3.14-16, 福岡大学・九州大学病院キャンパス, Mar. 2023

  
• The synergistic effect on crystalline cellulose degradation between cellulases and LPMO9 of selective white rot fungi

  Yusei Yagi; Keiko Kondo; Huyen Nguyen; Yu Iseki; Nagi Okuoka; Takashi; Watanabe; Bunzo Mikami; Takashi Nagata; Masato Katahira

  The 5th International Cellulose Conference [ICC2022+1](1st CIRCULAR),International Conference Center Hiroshima, Hiroshima, 2022.9.26-29, Sep. 2022

  
• Investigation of the structural dynamics and interactions of RNAs in living human cells by in-cell NMR

  Yudai Yamaoki; Omar Eladl; Keiko Kondo; Tomoki Sakamoto; Takashi Nagata; Masato Katahira

  第23回日本RNA学会,みやこめっせ,京都, 2022.7.20-22, Jul. 2022

  
• 2G1412 NMR study of XMRV protease in complex with an inhibitor(Protein: Structure 2,The 48th Annual Meeting of the Biophysical Society of Japan)

  Okamura Hideyasu; Matsunaga Tomoko; Furukawa Ayako; Sato Yusuke; Iwaoka Ryo; Nagata Takashi; Kobayashi Naohiro; Takaori Akifumi; Morishita Ryo; Ryo Akihide; Katahira Masato

  Seibutsu Butsuri, 2011

  
• HIV-1Vifタンパク質によるヒト抗ウイルス因子APOBEC3タンパク質のマルチファセットな無力化:ユビキチン化と脱アミノ化阻害

  神庭圭佑; WAN Li; WAN Li; 雲財悟; 森下了; 高折晃史; 永田崇; 永田崇; 片平正人; 片平正人

  日本分子生物学会年会プログラム・要旨集(Web), 2022

  
• HIV-1のRevペプチド変異体の調製とペプチド変異体とRRE RNAの相互作用のNMR解析

  渡邊なつき; 武田有未; COLIN Smith; 永田崇; 片平正人; 河野俊之; 坂本泰一

  日本生化学会大会(Web), 2017

  
• テロメア配列RNA結合性蛋白質hnRNPDの構造及びRNAとの相互作用

  片平正人; 永田崇; 佐伯純一; 栗原靖之; 上杉晴一; 河野俊之; 梶田保子; 石川冬木

  日本生物物理学会年会講演予稿集, 1996

  
• RNAi関連因子hTRBP2の構造生物学的解析

  山下征輔; 山下征輔; 川添将仁; 竹本千重; 赤坂領吾; 永田崇; 武藤裕; 木川隆則; 木川隆則; 滝元宏治; 脇山素明; 横山茂之

  日本分子生物学会年会講演要旨集, 2009

  
• Physicochemical analysis of the droplets formed by nucleic acids using NMR spectroscopy

  Aika Kawakami; Yudai Yamaoki; Keiko Kondo; Tomoki Sakamoto; Takashi Nagata; Masato Katahira

  第45回日本分子生物学会年会日本生物物理学会共催, 幕張メッセ, 2022.11.30-12.2, Dec. 2022

  
• Base-pair opening dynamics of nucleic acids in living human cells studied by in-cell NMR

  Yudai Yamaoki; Takashi Nagata; Tomoki Sakamoto; Omar Eladl; Aika Kawakami; Keiko Kondo; Masato Katahira

  第45回日本分子生物学会年会日本生物物理学会共催, 幕張メッセ, 2022.11.30-12.2, Dec. 2022

  
• Analysis of base-pair opening/closing dynamics of DNA triplex structure under molecular crowding environment using R1ρ relaxation dispersion experiment

  Tomoki Sakamoto; Yudai Yamaoki; Takashi Nagata; Masato Katahira

  The 61st Annual Meeting of the Nuclear Magnetic Resonance Society of Japan (2002), 2022.11.8-10, Nov. 2022, Peer-reviewed

  
• NMR analysis of the interaction between the C-terminal-truncated hepatitis B virus X protein (HBx) peptide and anti-apoptotic protein Bcl-xL

  Hideki Kusunoki; Taiichi Sakamoto; Toshiyuki Kohno; Kaori Wakamatsu; Isao Hamaguchi; Takashi Nagata

  The 61st Annual Meeting of the Nuclear Magnetic Resonance Society of Japan (2002), 2022.11.8-10, Nov. 2022, Peer-reviewed

  
• Base-pair opening dynamics of nucleic acids in living human cells studied by in-cell NMR

  Yudai Yamaoki; Takashi Nagata; Keiko Kondo; Tomoki Sakamoto; Omar Eladl; Masato Katahira

  The 61st Annual Meeting of the Nuclear Magnetic Resonance Society of Japan (2002), 2022.11.8-10, Nov. 2022, Peer-reviewed

  
• Base-pair opening dynamics and interactions with ligands of nucleic acids in living human cells studied by in-cell NMR

  Yudai Yamaoki; Omar Eladl; Keiko Kondo; Tomoki Sakamoto; Takashi Nagata; Masato Katahira

  ISNAC 2022, Tokyo Univ. Sci., 2022.11.2-4, 02 Nov. 2022, Peer-reviewed

  
• Analysis of the structure and dynamics of triplex forming oligodeoxynucleotide in living human cells

  Tomoki Samakoto; Yudai Yamaoki; Takashi Nagata; Masato Katahira

  The 60th Annual Meeting of the Biophysical Society of Japan, 2022.9.28-30, Hakodate Arena/Hakodate Citizen Hall, hybrid, 28 Sep. 2022

  
• In silico approach for identification of the thermodynamic profiles of aptamer-IgG binding

  Ryoji Yamazaki; Azumi Ito; Tomoki Sakamoto; Masaki Komine; Takeshi Ishikawa; Masato Katahira; Takashi Nagata; Taiichi Sakamoto; Kenji Yamagishi

  The 60th Annual Meeting of the Biophysical Society of Japan, 2022.9.28-30, Hakodate Arena/Hakodate Citizen Hall, hybrid, 27 Sep. 2022

  
• 2P-107 A simultaneous RNA-binding mode of two RNA-binding domains of Musashi-1 analyzed by paramagnetic effects, PRE, PCS, and RDC(The 46th Annual Meeting of the Biophysical Society of Japan)

  Nagata Takashi; Ohyama Takako; Furukawa Ayako; Sugiyama Takashi; Mashima Tsukasa; Imai Takao; Okano Hideyuki; Yamazaki Toshio; Katahira Masato

  Seibutsu Butsuri, 2008

  
• Comparison of dynamics between two RNA-binding domains of Musashi1.

  Watanabe M.; Kobayashi H.; Ichikawa T.; Nagata T.; Kanno R.; Okano H.; Uesugi S.; Katahira M.

  Seibutsu Butsuri, 1999

  
• 神経系特異的RNA結合タンパク質マウスMusashi-1の2つのRNPモチーフのRNA結合能と二次構造

  栗原 靖之; 永田 崇; 樋渡 亜土; 今井 貴雄; 榊原 伸一; 岡野 栄之; 片平 正人; 上杉 晴一

  日本分子生物学会年会プログラム・講演要旨集, 01 Aug. 1996

  
• UUAGGG配列結合蛋白質hnRNP-Dの構造及びRNAとの相互作用のNMRによる研究

  永田 崇; 片平 正人; 佐伯 純一; 栗原 靖之; 上杉 晴一; 梶田 保子; 石川 冬木; 河野 俊之

  日本分子生物学会年会プログラム・講演要旨集, 01 Aug. 1996

  
• Structure, dynamics and interactions with RNA of neural RNA-binding protein, Musashi.

  Kobayashi H.; Nagata T.; Kanno R.; Saeki J.; Kurihara Y.; Imai T.; Sakakibara S.; Okano H.; Uesugi S.; Katahira M.

  Biophysics, 07 Sep. 1998

  
• Structure and stability of a mouse neural specific RNA binding protein, mouse-Musashi-1

  KANNO R.; NAGATA T.; SAEKI J.; KOBAYASHI H.; HIWATASHI A.; KURIHARA Y.; IMAI T.; SAKAKIBARA S.; OKANO H.; KONO T.; KATAHIRA M.; UESUGI S.

  Biophysics, Oct. 1997

  
• Development of the RNA aptamer that binds to Vif complex

  熊谷紀志; 鈴木拓也; 関川湧斗; 神庭圭佑; 万里; 永田佳代子; 高折晃史; 片平正人; 永田崇; 坂本泰一

  日本核酸医薬学会第7回年会,2022.07.31-08.03,御茶ノ水ソラシティカンファレンスセンター, 31 Jul. 2022

  
• Molecular mechanism of deamination inhibition of anti-viral factor APOBEC3G by five-membered complex of HIV-1 Vif and host proteins

  神庭圭佑; 雲財悟; 森下了; 高折晃史; 永田崇; 片平正人

  第22回日本蛋白質科学会年会,2022.06.07-09, つくば国際会議場, 07 Jun. 2022

  
• Effect of site-directed mutagenesis of Aspergillus sydowii feruloyl esterase on substrate preference

  Apisan Phienluphon; Keiko Kondo; Takashi Nagata; Masato Katahira

  The 2022 Annual Meeting of the Japan Society for Bioscience, Biotechnology and Agrochemistry, 2022.3.15-18, on-line, 18 Mar. 2022

  
• A challenge to lignocellulose degradation by a laser

  Takayasu Kawasaki; Takeshi Sakai; Yoske Sumitomo; Kyoko Nogami; Ken Hayakawa; Takashi Nagata; Heishun Zen; Yasushi Hayakawa

  The 2022 Annual Meeting of the Japan Society for Bioscience, Biotechnology and Agrochemistry, 2022.3.15-18, on-line, 15 Mar. 2022

  
• The synergistic effect on cellulose degradation of LPMO9 of wood rot fungi, Ceriporiopsis subvermispora

  Yusei Yagi; Keiko Kondo; Huyen Nguyen; Takashi Watanabe; Bunzo Mikami; Takashi Nagata; Masato Katahira

  The 2022 Annual Meeting of the Japan Society for Bioscience, Biotechnology and Agrochemistry, 2022.3.15-18, on-line, 15 Mar. 2022

  
• Cell surface display of fungal feruloyl esterase in Pichia pastoris

  Apisan Phienluphon; Keiko Kondo; Takashi Nagata; Masato Katahira

  The 72nd Annual Meeting of Japan Wood Research Society, 2022.3.15-17, Nagoya-Gifu, on-line, 15 Mar. 2022

  
• Boost in beech wood’s lignin degradation by heterogeneously expressed manganese peroxidase by using a semi-continuous bioreactor system

  Sze Kai Kenneth Teo; Keiko Kondo; Takashi Nagata; Masato Katahira

  The 72nd Annual Meeting of Japan Wood Research Society, 2022.3.15-17, Nagoya-Gifu, on-line, 15 Mar. 2022

  
• Structural analysis of ester-type lignin-carbohydrate linkages

  Hiroshi Nishimura; Kazuma Nagata; Takashi Nagata; Masato Katahira; Takashi Watanabe

  The 72nd Annual Meeting of Japan Wood Research Society, 2022.3.15-17, Nagoya-Gifu, on-line, 15 Mar. 2022

  
• The structure and dynamics of DNA and RNA in living human cells studied by in-cell NMR

  Yudai Yamaoki; Takashi Nagata; Tomoki Sakamoto; Shohei Takami; Masato Katahira

  Pacifichem 2021, virtual, 16 Dec. 2021, Peer-reviewed

  
• Analysis of enzymatic cleavage of lignin-carbohydrate linkage in woody biomass by fungal glucuronoyl esterase

  Keiko Kondo; Yuta Sakurai; Yuka Yonezawa; Meng-I Lin; Takashi Nagata; Masato Katahira

  Pacifichem 2021, virtual, 16 Dec. 2021, Peer-reviewed

  
• Structural and physical basis for anti-prion activity and destruction of the Alzheimer’s disease-related complex of an RNA-aptamer

  Takashi Nagata; Tsukasa Mashima; Joon-Hwa Lee; Yuji O. Kamatari; Tomohiko Hayashi; Masahiro Kinoshita; Kazuo Kuwata; Masato Katahira

  Pacifichem 2021, virtual, 16 Dec. 2021, Peer-reviewed, Lead author

  
• NMR analysis of RNA aptamer that binds to Vif complex

  Yuta-Sekigami; Kazuyuki Kumagai; Takuya Suzuki; Yuto Sekikawa; Keisuke Kamba; Li Wan; Kayoko Nagata; Akifumi Takaori-Kondo; Masato Katahira; Takashi Nagata; Taiichi Sakamoto

  The 44th Annual Meeting of the Molecular Biology Society of Japan, 2021.12.1-3, Pacifico Yokohama, Dec. 2021

  
• NMR analysis of the interactions between DNA:RNA hybrid G-quadruplex and arginine-glycine-rich peptides

  Chihiro Nakayama; Yudai Yamaoki; Takashi Nagata; Masato Katahira

  The 44th Annual Meeting of the Molecular Biology Society of Japan, 2021.12.1-3, Pacifico Yokohama, Dec. 2021

  
• Development of AFM-based quadruplex DNA evaluation method using machine learning

  Yoichiro Tanaka; Takashi Nagata; Chika Sugimoto; Toshio Ogino

  The 44th Annual Meeting of the Molecular Biology Society of Japan, 2021.12.1-3, Pacifico Yokohama, Dec. 2021

  
• Effect of the charged residues on inhibition of APOBEC3G by HIV-1 Vif

  Kamba K; Wan L; Unzai S; Morishita R; Nagata T; Katahira M

  The 44th Annual Meeting of the Molecular Biology Society of Japan, 2021.12.1-3, Pacifico Yokohama, Dec. 2021

  
• Structural basis for Musashi-1-RNA complex formation

  Tu WH; Kamba K; Imai T; Kobayashi N; Guntert P; Nagata T; Katahira M

  The 44th Annual Meeting of the Molecular Biology Society of Japan, 2021.12.1-3, Pacifico Yokohama, Dec. 2021

  
• NMR Analysis of Interaction between Artificial Peptides and RNAs Derived from HIV-1 Rev and RRE RNA

  Sakamoto T; Nagata T; Koji R; Maeda T; Takeda Y; Kobayashi N; Guntert P; Katahira M; Smith CA; Harada K

  Joint Conference of ISMAR-APNMR-NMRSJ-SEST 2021, on-line, 21.08.23-27, 22 Aug. 2021, Peer-reviewed

  
• Structural basis for Musashi-1-RNA complex formation

  Tu WH; Kamba K; Imai T; Kobayashi N; Guntert P; Nagata T; Katahira M

  Joint Conference of ISMAR-APNMR-NMRSJ-SEST 2021, on-line, 21.08.23-27, 22 Aug. 2021, Peer-reviewed

  
• NMR spectroscopic analysis of enzymatic cleavage of lignin-carbohydrate linkage in woody biomass by fungal glucuronoyl esterase

  Kondo K; Sakai Y; Yonezawa Y; Meng-I, L; Nagata T; Katahira M

  Joint Conference of ISMAR-APNMR-NMRSJ-SEST 2021, on-line, 21.08.23-27, 22 Aug. 2021, Peer-reviewed

  
• In-cell NMR analysis of the DNA triplex structures inside the living human cells

  Sakamoto T; Yamaoki Y; Nagata T; Katahira M

  Joint Conference of ISMAR-APNMR-NMRSJ-SEST 2021, on-line, 21.08.23-27, 22 Aug. 2021, Peer-reviewed

  
• In-cell NMR Analysis of the Structure and Dynamics of Hairpin and G-quadruplex Structures in the Living Human Cells

  Yamaoki Y; Nagata T; Kondo K; Sakamoto T; Takami S; Katahira M

  Joint Conference of ISMAR-APNMR-NMRSJ-SEST 2021, on-line, 21.08.23-27, 22 Aug. 2021, Peer-reviewed

  
• Catalytic analysis demonstrates that the inhibition of deamination reaction of A3G by Vif complex can be independent of A3G's ubiquitination

  Kamba K; Wan L; Unzai S; Morishita R; Nagata T; Katahira M

  Joint Conference of ISMAR-APNMR-NMRSJ-SEST 2021, on-line, 21.08.23-27, 22 Aug. 2021, Peer-reviewed

  
• Study of the Interaction Between Human Origin Recognition Complex Subunit 1 and G-quadruplex Forming Nucleic Acids

  Afaf Eladl; Yudai Yamaoki; Shoko Hoshina; Haruka Horinouchi; Keiko Kondo; Takashi Nagata; Shou Waga; Masato Katahira

  Joint Conference of ISMAR-APNMR-NMRSJ-SEST 2021, on-line, 21.08.23-27, 22 Aug. 2021, Peer-reviewed

  
• 様々な合成条件で調製した Dehydrogenation polymer の性状解析

  德永有希; 永田崇; 近藤敬子; 片平正人; 渡辺隆司

  第71回日本木材学会大会, 2021.3.19-21, 東京農工大学府中キャンパス, on-line, Mar. 2021

  
• 選択的白色腐朽菌由来の溶解性多糖モノオキシゲナーゼと セルラーゼのシナジー効果の検証

  Yagi Y; Kondo K; Nagata T; Katahira M

  第71回日本木材学会大会, 2021.3.19-21, 東京農工大学府中キャンパス, on-line, Mar. 2021

  
• Screening and heterologous expression of fungal feruloyl esterases, a lignin- carbohydrate complex degrading enzymes, in Pichia pastoris X-33

  Phienluphon A; Kondo K; Nagata T; Katahira M

  日本農芸化学会2021年度仙台大会, 2021.3.18-21, on-line, Mar. 2021

  
• Analysis of the interaction between Msi1 RBD1-RBD2 and RNAs

  Tu. W. H; Kamba K; Nagata T; Katahira M

  第43回日本分子生物学会年会, 2020.12.2-4, online, 03 Dec. 2020

  
• 腐朽菌由来グルクロノイルエステラーゼ による天然リグニン-多糖複合体の分解活性評価

  米沢柚香; 近藤敬子; 坂井勇太; 林孟宜; 永田崇; 片平正人

  第 43 回日本分子生物学会年会, 2020.12.2-4, オンライン開催, 02 Dec. 2020

  
• Investigation of the interaction between human origin recognition complex subunit 1 and G-rich DNAs

  A. Eladl; Y. Yamaoki; S. Hoshina; H. Horinouchi, K; Kondo; O. Eladl; T. Nagata; S. Waga

  第 43 回日本分子生物学会年会, 2020.12.2-4, オンライン開催, Dec. 2020

  
• 好冷菌 Sclerotinia borealis 由来 β-グルコシダーゼの クローニングおよびキャラクタリゼーション

  堀内正隆; 国永史郎; 齋藤泉; 片平正人; 永田崇

  第 43 回日本分子生物学会年会, 2020.12.2-4, オンライン開催, Dec. 2020

  
• In-cell NMR 法による非標準構造を形成する DNA のヒト生細胞 内観測

  阪本知樹; 山置佑大; 永田崇; 片平正人

  第 43 回日本分子生物学会年会, 2020.12.2-4, オンライン開催, Dec. 2020

  
• NMR analysis of aptamers that bind to the Vif-CBFβ-CUL5-ELOB-ELOC complex

  Kumagai K; Suzuki T; Sekikawa Y; Kamba K; Wan L; Nagata K; Takaori A; Katahira M; Nagata T; Sakamoto T

  第59回NMR討論会(2020), Gメッセ群馬(高崎), 2020.11.17-19, 19 Nov. 2020

  
• HIV Vif 5者複合体はAPOBEC3GとAPOBEC3Fの脱アミノ化を阻害する

  神庭 圭佑; 万 里; 雲財 悟; 森下 了; 永田 崇; 片平 正人

  第59回NMR討論会(2020), Gメッセ群馬(高崎), 2020.11.17-19, 17 Nov. 2020

  
• 有機溶媒-水系におけるb-O-4結合型リグニンオリゴマーモデルの2次元NMRスペクトルの帰属と高次構造の解析

  Yuki Tokunaga; Takashi Nagata; Keiko Kondo; Masato Katahira; Takashi Watanabe

  第17回持続的生存圏創成のためのエネルギー循環シンポジウム・第10回先進素材開発解析システム（ADAM）シンポジウム, Kyoto Univ., Uji, 2020.10.30, Oct. 2020

  
• Research and development of enzymatic activity control using VHH antibody

  A. Takaori-Kondo; T. Nagata

  The 11th International Symposium of Advanced Energy Science, Kyoto Univ., Uji, 2020.9.15-16, 15 Sep. 2020

  
• NMR analysis for the development of artificial RNAs to control biomolecular functions

  K. Kumagai; T. Suzuki; Y. Sekikawa; K. Kamba; L. Wan; K. Nagata; A. Takaori-Kondo; M. Katahira; T. Nagata

  The 11th International Symposium of Advanced Energy Science, Kyoto Univ., Uji, 2020.9.15-16, 15 Sep. 2020

  
• Elucidation of correlation between G-quadruplex-based gene expression regulation and their structure

  Y. Tanaka; T. Nagata; T. Ogino

  The 11th International Symposium of Advanced Energy Science, Kyoto Univ., Uji, 2020.9.15-16, 15 Sep. 2020

  
• NMR analysis of the three-dimensional solution structure of the sequence-specific RNA-binding protein Musashi involved in translation control of the downstream target RNA

  W.-H. Tu; K. Kamba; T. Nagata; M. Katahira; T. Imai

  The 11th International Symposium of Advanced Energy Science, Kyoto Univ., Uji, 2020.9.15-16, 15 Sep. 2020

  
• Development of the crystalline cellulose degradation system consisting of the psychrophilic fungus-type hybrid enzymes

  M. Horiuchi; S. Kuninaga; I. Saito; M. Katahira; T. Nagata

  The 11th International Symposium of Advanced Energy Science, Kyoto Univ., Uji, 2020.9.15-16, 15 Sep. 2020

  
• Interaction analysis between cellulase carbohydrate-binding module and lignin by ultra-high sensitivity NMR for biorefinery

  Takashi Watanabe; Yuki Tokunaga; Takashi Nagata; Keiko Kondo; Masato Katahira

  The 11th International Symposium of Advanced Energy Science, Kyoto Univ., Uji, 2020.9.15-16, Sep. 2020

  
• Heterologous expression and oxidative activity of four fungal ligninolytic enzymes by Pichia pastoris

  Kenneth TSK; Kondo K; Nagata T; Katahira M

  日本農芸化学会2020年度大会, 2020.3.25-28, 九州大学伊都キャンパス, 25 Mar. 2020

  
• 選択的白色腐朽菌が産する溶解性多糖モノオキシゲナーゼの構造および活性の解析

  Kondo K; Nguyen H; Wangsamihardja A; Kodaki T; Mikami B; Watanabe T; Nagata T; Katahira M

  日本農芸化学会2020年度大会, 2020.3.25-28, 九州大学伊都キャンパス, 25 Mar. 2020

  
• リグニン・多糖複合体分解に関与する白色腐朽菌由来グルクロノイルエステラーゼの速度論解析および添加剤耐性

  Sakai Y; Lin MI; Hiyama A; Yonezawa Y; Kondo K; Nagata T; Katahira M

  日本農芸化学会2020年度大会, 2020.3.25-28, 九州大学伊都キャンパス, 25 Mar. 2020

  
• In-cell NMR法を用いた非標準構造を形成する核酸の構造安定性の解析

  Sakamoto T; Yamaoki Y; Kano F; Murata M; Nagata T; Katahira M

  第100回日本化学会年会, 2020.3.22-25, 東京理科大学, 22 Mar. 2020

  
• リグニンオリゴマーモデルとセルラーゼ糖質結合モジュール間の相互作用を原子・分子レベルで可視化するためのNMR解析

  Tokunaga Y; Nagata T; Kondo K; Katahira M; Watanabe T

  第70回日本木材学会大会, 2020.3.16-18, 鳥取大学, 16 Mar. 2020

  
• Oxidative activity of four heterologously expressed fungal ligninolytic enzymes by Pichia pastoris

  Kenneth TSK; Kondo K; Nagata T; Katahira M

  第70回日本木材学会大会, 2020.3.16-18, 鳥取大学, 16 Mar. 2020

  
• STRUCTURAL AND PHYSICAL BASIS FOR THE HIGHER AFFINITY TO ONCOPROTEIN MDM2 OF A PEPTIDE SELECTED WITH MRNA DISPLAY OVER TUMOR SUPPRESSOR P53

  Nagata T; Yamada T; Hayashi T; Hikiri S; Kobayashi N; Ikeguchi M; Katahira M; Kinoshita M; Yanagawa H

  64th Annual Meeting of the Biophysical Society, San Diego, 2020.2.15-19, 16 Feb. 2020, Lead author

  
• 安定同位体標識リグニンオリゴマーモデルを用いたセルラーゼ糖質結合モジュールとの相互作用解析

  Tokunaga Y; Nagata T; Kondo K; Katahira M; Watanabe T

  第402回生存圏シンポジウム 第16回持続的生存圏創成のためのエネルギー循環シンポジウム−マイクロ波高度利用と先端分析化学−・第9回先進素材開発解析システム（ADAM）シンポジウム−マイクロ波高度利用生存圏フラッグシップ共同研究−, 2019.12.18, 京都大学宇治キャンパス, 18 Dec. 2019

  
• AFMで測定したDNA粒子の特徴抽出と機械学習による四重鎖判別法の開発

  田中陽一郎; 永田崇; 萩野俊郎

  第42回日本分子生物学会年会, 福岡国際会議場(福岡)2019.12.3-6, Dec. 2019

  
• NADPH再生系を内包するハイブリッド型アゾレダクターゼの開発

  堀内正隆; 永田崇; 片平正人; 小橋川敬博; 鈴木定彦; 落合正則

  第42回日本分子生物学会年会, 福岡国際会議場(福岡)2019.12.3-6, Dec. 2019

  
• Promoter associated non-coding RNA, pncRNA, can diminish the aggregation of TLS caused by shearing stress

  Hamad NH; Mashima T; Yamaoki Y; Kondo K; Yoneda R; Kurokawa R; Nagata T; Katahira, M

  第42回日本分子生物学会年会, 福岡国際会議場(福岡)2019.12.3-6, Dec. 2019

  
• Ubiquitination independent inhibition of the human APOBEC3G by HIV Vif

  Kamba K; Wan L; Unzai S; Morishita R; Nagata T; Katahira M

  第42回日本分子生物学会年会, 福岡国際会議場(福岡)2019.12.3-6, Dec. 2019

  
• Characterization of aptamers that bind to the Vif - CBFβ - CUL 5 - ELOB - ELOC complex

  Kumagai K; Suzuki T; Sekikawa Y; Kamba K; Wan Li; Nagata K; Takaori-Kondo T; Katahira M; Nagata T; Sakamoto T

  第42回日本分子生物学会年会, 福岡国際会議場(福岡)2019.12.3-6, Dec. 2019

  
• X-ray crystal structure analysis and activity assay of lytic polysaccharide monooxygenase originated from selective white-rot fungus

  Kondo K; Nguyen H; Wangsamihardja A; Kodaki T; Mikami B; Watanabe T; Nagata T; Katahira M

  第42回日本分子生物学会年会, 福岡国際会議場(福岡)2019.12.3-6, Dec. 2019

  
• Analysis of structure and dynamics of nucleic acids introduced inside the living human cells by in-cell NMR

  Yamaoki Y; Nagata T; Sakamoto T; Takami S; Kano F; Murata M; Katahira M

  第42回日本分子生物学会年会, 福岡国際会議場(福岡)2019.12.3-6, Dec. 2019

  
• in-cell NMR analysis of the non-canonical structure of nucleic acids introduced inside the living human cells: the formation and the stability

  Sakamoto T; Yamaoki Y; Kano F; Murata M; Nagata T; Katahira M

  第42回日本分子生物学会年会, 福岡国際会議場(福岡)2019.12.3-6, Dec. 2019

  
• Analysis of nucleic acid-ligand interaction inside the living human cells by in-cell NMR

  Takami S; Yamaoki Y; Kano F; Murata M; Sakamoto T; Harada K; Nagata T; Katahira M

  第42回日本分子生物学会年会, 福岡国際会議場(福岡)2019.12.3-6, Dec. 2019

  
• In-cell NMR studies on structural stabilities of DNA and RNA introduced inside the living human cells

  Yamaoki Y, Nagata T, Takami S, Sakamoto T, Katahira M

  The 58th Annual Meeting of the NMR Society of Japan (2019), Kawasaki Convention Hall (Kawasaki)2019.11.7-9, 09 Nov. 2019

  
• Structural and functional study of anti-prion aptamers having high activity

  Nagata T; Mashima T; Lee JH; Kamatari YO; Hayashi T; Kinoshita, M; Kuwata K; Katahira M

  The 58th Annual Meeting of the NMR Society of Japan(2019)(Joint Annual Meeting of the 58th NMRJ & the 58th SEST)2019.11.7-9, Nov. 2019

  
• Evaluation of the structure and dynamics of nucleic acids inside the living human cells by in-cell NMR spectroscopy

  山置佑大, 永田崇, 清石 彩華, 三宅 雅之, 加納ふみ, 村田昌之, 片平正人

  第57回日本生物物理学会年会, シーガイア(宮崎), 2019.9.24-26, Sep. 2019

  
• Fractionation and analysis of lignin-carbohydrate complex using lignin-degrading enzymes

  Saho Kashima; Hiroshi Nishimura; Shizuka Sakon; Misato Yamada; Yasuhiro Shimane; Yukari Ohta; Keiko Kondo; Yudai Yamaoki; Takashi Nagata; Masato Katahira; Takashi Watanabe

  1st International Lignin Symposium (ILS), 20190914, Hokkaido Univ., Sep. 2019

  
• Interaction analysis between cellulase carbohydrate-binding module and lignin by ultra-high sensitivity NMR for biorefinery

  Watanabe, T; Tokunaga, Y; Ohshiro S; Nishimura, H; Kishimoto, T; Nakamura, M; Kondo, K; Nagata, T; Katahira, M

  The 10th International Symposium of Advanced Energy Science, Kyoto Univ., Uji, 2019.9.4-6, Sep. 2019

  
• The observation of in-cell NMR signals of nucleic acids in living human cells

  Yamaoki Y; Kiyoishi A; Miyake M; Lin KH; Kano F; Murata M; Nagata T; Katahira M

  7th International Meeting of Quadruplex Nucleic Acids, Changchun, 2019.09.06-09, Sep. 2019

  
• Inhibition mechanism of HIV Vif–human E3 ubiquitin ligase complex against enzymatic activity of APOBEC3G

  Kamba K; Wan L; Unzai S; Morishita R; Nagata T; Katahira M

  The 57th Annual Meeting of The Biophysical Society of Japan, Miyazaki, 2019.09.24-26, Sep. 2019

  
• The effect of the distance between the RNA sequences recognized by two RNA-binding domains on the affinity of the MSI1-RNA interaction

  Tu WH; Kamba K; Nagata T; Katahira M

  The 57th Annual Meeting of The Biophysical Society of Japan, Miyazaki, 2019.09.24-26, Sep. 2019

  
• NMR Analysis for Molecular Insight into the Interaction between Lignin and Carbohydrate Binding Module of Cel7A from Trichoderma reesei

  Tokunaga, Y; Nagata, T; Kondo, K; Katahira, M; Watanabe, T

  The 20th International Symposium on Wood, Fiber and Pulping Chemistry, Univ. Tokyo, 2019.09.09-11, Sep. 2019

  
• Structural analyses of covalent linkages between lignin and hemicellulose in wood cell walls

  H. Nishimura; K. Nagata; M. Yamada; T. Nagata; M. Katahira; T. Watanabe

  1st International Lignin Symposium, Sapporo. 2019.9.13-15, Sep. 2019

  
• NMR study on Binding Sites of 13C-Lignin Oligomer Models with Carbohydrate Binding Module of Cel7A from Trichoderma reesei

  Tokunaga, Y; Nagata, T; Kondo, K; Katahira, M; Watanabe, T

  1st International Lignin Symposium, Sapporo. 2019.9.13-15, Sep. 2019

  
• Strategy of lignocellulose conversion using catalysts with controlled affinity to lignin

  Watanabe, T; Tokunaga, Y; Oshiro, S; Saito, K; Okano, H; Nishimura, H; Nagata, T; Kondo, K; Katahira, M; Isozaki, K; Takaya, H; Nakamura, M

  1st International Lignin Symposium, Sapporo. 2019.9.13-15, Sep. 2019

  
• セルラーゼ糖質結合モジュールに対するリグニンモデル吸着部位の解析

  德永有希; 永田崇; 近藤敬子; 片平正人; 渡辺隆司

  第33回セルラーゼ研究会, 佐久平プラザ（長野）, 2019.8.20-21, Aug. 2019

  
• Disruption of the Alzheimer’s disease-related complex between prion and amyloid β by an anti-prion aptamer

  T. Mashima; Y. M. Iida; Yamaoki; M. So; T. Nagata; M. Katahira

  Commemorative International Symposium of the Japan Society of Nucleic Acids Chemistry (CISNAC) 2019, Konan University, 2019.07.22-24, Jul. 2019

  
• In-cell NMR analysis for structure and dynamics of nucleic acids introduced inside the living human cells

  Y. Yamaoki; T. Nagata; A. Kiyoishi; M. Miyake; L. Kuan-Heng; S. Takami; F. Kano; M. Murata; M. Katahira

  第21回日本RNA学会年会, 東京大学, 2019.07.17-19, Jul. 2019

  
• Development and structural determination of an RNA aptamer that blocks conformational conversion of prion protein

  Tsukasa Mashima; Joon-Hwa Lee; Yuji O. Kamatari; Tomohiko Hayashi; Takashi Nagata; Fumiko Nishikawa; Satoshi Nishikawa; Masahiro Kinoshita; Kazuo Kuwata; Masato Katahira

  第21回日本RNA学会年会, 東京大学, 2019.07.17-19, Jul. 2019

  
• An insight into the target search and HIV Vif-dependent inactivation of APOBEC3F and APOBEC3G elucidated by tracking the deamination events

  Kamba K; Wan L; Nagata T; Katahira M

  8th Asia-Pacific NMR Symposium, Nanyang Technol Univ (Singapore), 2019.07.03-06, Jul. 2019, Peer-reviewed

  
• The deamination rates of APOBEC3F and APOBEC3G are affected by their concentrations and that of DNAs, as well as the length of the DNAs

  Kamba K; Wan L; Nagata T; Katahira M

  第19回日本蛋白質科学会年会 第71回日本細胞生物学会大会 合同年次大会, 神戸国際会議場, 2019.06.24-26, Jun. 2019

  
• 白色腐朽菌Pleurotus eryngii由来のリグニン・多糖複合体分解酵素グルクロノイルエステラーゼの発現・精製・活性検証と各種添加剤の活性への影響に関する速度論解析

  坂井勇太; 林孟宜; 檜山明穂; 近藤敬子; 永田崇; 片平正人

  第69回日本木材学会大会, 函館アリーナ(北海道) 2019.3.14-16, Mar. 2019

  
• 13Cラベル化リグニンオリゴマーモデルを用いたセルラーゼ糖質結合モジュールとの相互作用解析

  徳永有希; 永田崇; 近藤敬子; 片平正人; 渡辺隆司

  第69回日本木材学会大会, 函館アリーナ(北海道) 2019.3.14-16, Mar. 2019

  
• 選択的白色菌Ceriporiopsis subvermispora由来lytic polysaccharide monooxygenase (LPMO) の反応性の解析

  井関優侑; 大城理志; 永田崇; 近藤敬子; 片平正人; 渡辺隆司

  第385回生存圏シンポジウム 2018.11.26京都大学(宇治市), Nov. 2018

  
• NMR化学シフト摂動法を用いたセルラーゼ糖質結合モジュールとリグニン間相互作用の解析

  徳永有希; 永田崇; 近藤敬子; 片平正人; 渡辺隆司

  第385回生存圏シンポジウム 2018.11.26京都大学(宇治市), Nov. 2018

  
• Development of RNA Aptamer That Has High Anti-prion Activity and Its Structural Basis

  Mashima, M; Joon-Hwa, L; Kamatari, Y. O; Hayashi, T; Nishikawa, F; Nagata, T; Nishikawa, S; Kinoshita, M; Kuwata, K; Katahira, M

  Japan Society of Nucleic Acids Chemistry, Nov. 2018

  
• In-cell NMR studies on structure and dynamics of DNA and RNA introduced inside the living human cells

  Yamaoki Y; Nagata T; Kiyoishi A; Miyake M; Lin K; Takami S; Kano F; Murata M; Katahira M

  ISNAC2018, Kyoto Univ (Kyoto), 2018.11.7-9, Nov. 2018

  
• NMR法によるリグニン-セルラーゼ糖質結合モジュール間吸着の解析

  徳永有希; 永田崇; 近藤敬子; 片平正人; 渡辺隆司

  第63回リグニン討論会, 東京農工大学（東京）2018.11.1-2, Nov. 2018

  
• Classification of a lignin-carbohydrate complex (LCC) degradation enzymes, fungal glucuronoyl esterases (FGEs), and expression/ characterization of two new FGEs of white rot fungi

  Lin MI; Hiyama A; Kondo K; Y Sakai; Nagata T; Katahira M

  第63回リグニン討論会, 東京農工大学（東京）2018.11.1-2, Nov. 2018

  
• In-cell NMR analysis for structure and dynamics of nucleic acids introduced inside the living human cells

  Yamaoki Y; Nagata T; Kiyoishi Y; Miyake M; Kuan-Heng L; Takami S; Kano F; Murata M; Katahira M

  第41回日本分子生物学会年会, パシフィコ横浜(横浜)2018.11.28-30, Nov. 2018

  
• HIV Vif– human E3 ubiquitin ligase complex directly inhibits the enzymatic activity of APOBEC3G

  Kamba K; Wang N; Unzai S; Morishita R; Nagata T; Katahira M

  第41回日本分子生物学会年会, パシフィコ横浜(横浜)2018.11.28-30, Nov. 2018

  
• Selection of 2’F-modified aptamers against Vif - CBFβ - CUL 5 - ELOB - ELOC complex

  Sekikawa Y; Mizusawa K; Kamba K; Suzuki T; Wan L; Katahira M; Nagata T; Sakamoto T

  第41回日本分子生物学会年会, パシフィコ横浜(横浜)2018.11.28-30, Nov. 2018

  
• Selection and characterization of aptamers against Vif - CBFβ - CUL 5 - ELOB - ELOC complex

  鈴木拓也; 万里; 関川湧斗; 田中陽一郎; 神庭圭介; 片平正人; 永田崇; 坂本泰一

  第41回日本分子生物学会年会, パシフィコ横浜(横浜)2018.11.28-30, Nov. 2018

  
• 中分子アゴニスト創薬のロジカルデザイン

  高折晃史; 北脇年雄; 永田崇

  第２回モダリティ創薬デザイン研究会, グランフロント大阪(大阪) 2018.11.26, Nov. 2018

  
• Fractionation and analysis of lignin-carbohydrate complex in wood cell wall

  Saho Kashima; Hiroshi Nishimura; Shizuka Sakon; Misato Yamada; Yukari Ohta; Keiko Kondo; Yudai Yamaoki; Takashi Nagata; Masato Katahira; Takashi Watanabe

  The 3rd Asia Research Node Symposium on Humanosphere Science, NCHU, Taiwan, 20180926: P19, Sep. 2018

  
• Fractionation and structural analysis of enzyme-treated lignin-carbohydrate complexes

  Hiroshi Nishimura; Shizuka Sakon; Misato Yamada; Kazuma Nagata; Takashi Nagata; Masato Katahira; Yukari Ohta; Takashi Watanabe

  lignobiotech 2018, p17, 5th Symposium of Biotechnology Applied to Lignocelluloses, Helsinki, 01 Sep. 2018

  
• An RNA aptamer disrupts the interaction of prion protein with Amyloid β

  Iida M; Mashima T; Yamaoki Y; So M; Nagata T; Katahira M

  The 56th Annual Meeting of the Biophysical Society of Japan, Okayama Univ (Okayama), 2018.9.15-17, Sep. 2018

  
• Real-Time NMR Analysis of the Continuous Degradation Process of Azo Dyes using Azoreductase in Cooperation with the NADPH Regeneration System

  Horiuchi M; Nagata T; Katahira M; Kobashigawa Y; Suzuki Y; Ochiai M

  The 9th International Symposium of Advanced Energy Science, Kyoto Univ., Uji, 2018.9.3-5, Sep. 2018

  
• Development of Lignocellulose Degrading Saccharomyces Cerviciae via Cell-Surface Display of Lytic Polysaccharide Monooxygenase

  Mousa MOM; Kondo K; Khattab S; Nagata T; Abdul-Raouf UM; Watanabe T; Katahira M

  The 9th International Symposium of Advanced Energy Science, Kyoto Univ., Uji, 2018.9.3-5, Sep. 2018

  
• Development of Functional Peptides that Bind to RNA

  Watanabe N; Kinase T; Nomura Y; Nagata T; Katahira M; Sakamoto T

  The 9th International Symposium of Advanced Energy Science, Kyoto Univ., Uji, 2018.9.3-5, Sep. 2018

  
• Interaction Analysis Between Cellulase Carbohydrate-Binding Module and Lignin by Ultra-High Sensitivity NMR for Biorefinery

  Watanabe T; Tokunaga T; Ohshiro S; Nishimura H; Kishimoto T; Nakamura M; Kondo T; Nagata T; Katahira M

  The 9th International Symposium of Advanced Energy Science, Kyoto Univ., Uji, 2018.9.3-5, Sep. 2018

  
• Hopping Conduction in A Hydronium Solvate Ionic Liquid

  Kitada A; Fukami K; Saimura M; Nagata T; Katahira M

  The 9th International Symposium of Advanced Energy Science, Kyoto Univ., Uji, 2018.9.3-5, Sep. 2018

  
• Characteristics of the C-terminal domain of anti-viral factor APOBEC3G: mechanism behind a target search and inhibition by HIV-1 Vif protein

  Kamba K; Nagata T; Katahira M

  XXVIII International Conference on Magnetic Resonance in Biological Systems, Univ Col Dublin (Ireland), 2018.8.19-24, Sep. 2018

  
• NMR analysis of Non-productive Binding of Carbohydrate Binding Module of Cellobiohydrolase with Lignin

  Tokunaga T; Nagata T; Kondo K; Katahira M; Watanabe T

  The 3rd Asia Research Node Symposium on Humanosphere Science, National Chung Hsing University (Taiwan) 2018.9.25-27, Sep. 2018

  
• Physical origin of the large difference between MDM2-p53NTD and -MIP complexes in binding free energy

  Yamada T; Hayashi T; Kobayashi N; Yanagawa H; Katahira M; Nagata T; Kinoshita M

  The 56th Annual Meeting of The Biophysical Society of Japan, Sep. 2018

  
• Deep-MagRO: 深層学習を応用した高速かつ高精度な統合的NMR解析システム

  小林直宏; 杉木俊彦; 永田崇; 古賀信康; Peter Güntert; 児嶋長次郎; 藤原敏道

  第57回NMR討論会 札幌コンベンションセンター（札幌市）, 2018.9.18-20, Sep. 2018

  
• In-cell NMR studies on structure and dynamics of DNA and RNA introduced inside the living human cells

  Yamaoki Y; Nagata T; Kiyoishi Y; Miyake M; Kano F; Murata M; Katahira M

  第57回NMR討論会 札幌コンベンションセンター（札幌市）, 2018.9.18-20, Sep. 2018

  
• 抗プリオン活性を有する四重鎖RNAの構造解析

  真嶋司; Lee Joon-Hwa; 林 智彦; 西川富美子; 鎌足雄司; 永田崇; 西川諭; 桑田一夫; 木下 正弘; 片平正人

  第57回NMR討論会 札幌コンベンションセンター（札幌市）, 2018.9.18-20, Sep. 2018

  
• Approaches for valorization of lignovelluloses using microwave technology and lignin-binding catalysts

  Takashi Watanabe; Chen Qu; Satoshi Oshiro; Hiroshi Nishimura; Keiichiro Kashimura; Takashi Nagata; Masato Katahira; Katsuhiro Isozaki; Hikaru Takaya; Masaharu Nakamura

  lignobiotech 2018, p21, 5th Symposium of Biotechnology Applied to Lignocelluloses, Helsinki, 31 Aug. 2018

  
• Observation of imino proton signals of DNA and RNA introduced inside the living human cells by using in-cell NMR spectroscopy

  Yamaoki Y; Nagata T; Kiyoishi Y; Miyake M; Kano F; Murata M; Katahira M

  XXVIII International Conference on Magnetic Resonance in Biological Systems, Univ Col Dublin (Ireland), 2018.8.19-24, Aug. 2018

  
• Structural and theoretical insights into the RNA-recognition mechanism by Musashi-1

  Nagata T; Iwaoka R; Hayashi T; Tsuda K; Kobayashi N; Kinoshita M; Katahira M

  XXVIII International Conference on Magnetic Resonance in Biological Systems, Univ Col Dublin (Ireland), 2018.8.19-24, Aug. 2018

  
• Application of Deep Neural Networks for Highly Accurate NMR Structure Analysis by Deep-MagRO

  Kobayashi N; Sugiki T; Hattori Y; Nagata T; Shinya S; Wurz JM; Koga R; Koga N; Guntert P; Kojima C; Fujiwara T

  XXVIII International Conference on Magnetic Resonance in Biological Systems, Univ Col Dublin (Ireland), 2018.8.19-24, Aug. 2018

  
• 白色腐朽菌Ceriporiopsis subvermispora由来lytic polysaccharide monooxygenase (LPMO) の反応性の解析

  井関優侑; 大城理志; 永田崇; 近藤敬子; 片平正人; 渡辺隆司

  第32回セルラーゼ研究会, 佐久平プラザ（長野）, 2018.7.13-14, Jul. 2018

  
• Trichoderma reesei由来Cel7AのCBM1がリグニンに吸着するメカニズムの解析

  徳永有希; 永田崇; 近藤敬子; 片平正人; 渡辺隆司

  第32回セルラーゼ研究会, 佐久平プラザ（長野）, 2018.7.13-14, Jul. 2018, Invited

  
• Inhibition of the interaction of prion protein with Amyloid β by an anti-prion aptamer

  飯田 真美子; 真嶋 司; 山置 佑大; 宗 正智; 永田 崇; 片平正人

  第20回日本RNA学会年会2018.7.9-11ホテルコスモスクエア国際交流センター(大阪), Jul. 2018

  
• Interaction between HIV-1 RRE RNA and artificial peptides

  Nomura Y; Watanabe N; Kinase T; Nagata T; Katahira M; Harada K; Sakamoto T

  第20回日本RNA学会年会2018.7.9-11ホテルコスモスクエア国際交流センター(大阪), Jul. 2018

  
• Selection and characterization of aptamers against Vif - CBFβ - CUL 5 - ELOB - ELOC complex

  鈴木拓也; 万里; 関川湧斗; 田中陽一郎; 神庭圭介; 片平正人; 永田崇; 坂本泰一

  平成30年度日本生化学会関東支部例会, 埼玉大学(埼玉), 2018.6.23, Jun. 2018

  
• Interaction of HIV Vif-E3 ubiquitin ligase complex with nucleic acid

  K. Kamba; T. Nagata; M. Katahira

  18th Annual Meeting of the Protein Science Society of Japan 2018.06.26-28, Tokimess (Niigata), Jun. 2018

  
• Detection of different conformational changes of Translocated in liposarcoma, TLS, upon its binding to various nucleic acids

  Nesreen Hamad; Tsukasa Mashima; Yudai Yamaoki; Hiroki Watanabe; Takayuki Uchihashi; Riki Kurokawa; Takashi Nagata; Masato Katahira

  18th Annual Meeting of the Protein Science Society of Japan 2018.06.26-28, Tokimess (Niigata), Jun. 2018

  
• セルラーゼ糖質結合モジュールとリグニン間相互作用部位のNMRによる解析

  徳永有希; 大城理志; 永田崇; 近藤敬子; 西村裕志; 片平正人; 渡辺隆司

  第68回日本木材学会, 京都大学(京都), 2018.3.14-16, Mar. 2018

  
• NADPH再生系を伴ったアゾレダクターゼによるアゾ染料分解反応のNMR解析

  堀内正隆; 永田崇; 片平正人; 小橋川敬博; 鈴木定彦; 落合正則

  日本分子生物学会年会プログラム・要旨集(Web), 2018

  
• Modeling of the tandem RNA-binding domains of a neural and oncogenic protein, Musashi1, engaging the minimum target RNA

  Ryo Iwaoka; Takashi Nagata; Kengo Tsuda; Takao Imai; Hideyuki Okano; Naohiro Kobayashi; Masato Katahira

  ConBio2017, 神戸ポートアイランド(神戸)2017.12.6-9, Dec. 2017

  
• The effect of different target nucleic acids on the structural change of TLS

  Nesreen Hamad; Tsukasa Mashima; Hiroki Watanabe; Takayuki Uchihashi; Riki Kurokawa; Takashi Nagata; Masato Katahira

  ConBio2017, 神戸ポートアイランド(神戸)2017.12.6-9, Dec. 2017

  
• Interaction between non-coding RNA and TLS/FUS protein, and structural change

  Mashima, T; Nagata, T; Hamad, N; Ozawa, S; Yamaoki, Y; Kondo, K; Watanabe, H; Yoneda, R; Uchihashi, T; Kurokawa, R; Katahira, M

  The 44th International Symposium on Nucleic Acids Chemistry, Nov. 2017

  
• Binding analysis of tandem dimer of lignin-binding peptide and design of artificial enzyme carrying the peptide for enhanced lignin degradation

  Satoshi Oshiro; Asako Yamaguchi; Hiroshi Nishimura; Takashi Nagata; Masato Katahira; Takashi Watanabe

  HSS2017 and 7th ISSH meeting, Bogor, Indonesia (oral), Nov. 2017

  
• Studies on lytic polysaccharide monooxygenase (LPMO) from the selective white rot fungus, Ceriporiposis subvermispora

  Yuu Iseki; Satoshi Oshiro; Takashi Nagata; Keiko Kondo; Hiroshi Nishimura; Masato Katahira; Takashi Watanabe

  Humanosphere Science School 2017, Salak Tower (Bogor, Indonesia), 2017.11.1-2, Nov. 2017

  
• Analysis of Adsorption Mechanism between Carbohydrate Binding Module of Cellulase and Lignin by NMR

  Yuki Tokunaga; Satoshi Oshiro; Takashi Nagata; Keiko Kondo; Hiroshi Nishimura; Masato Katahira; Takashi Watanabe

  Humanosphere Science School 2017, Salak Tower (Bogor, Indonesia), 2017.11.1-2, Nov. 2017

  
• Analysis of Lignin-Carbohydrate Complexes in Woody Biomass by Using NMR

  Shizuka Sakon; Hiroshi Nishimura; Misato Yamada; Yukari Ohta; Keiko Kondo; Yudai Yamaoki; Takashi Nagata; Masato Katahira; Takashi Watanabe

  Humanosphere Science School 2017, Salak Tower (Bogor, Indonesia), 2017.11.1-2, Nov. 2017

  
• Interactions between eukaryotic initiation factors implicated during ribosomal scanning and start codon recognition

  Takashi Nagata; Hisashi Yoshida; Satoru Unzai; Takeshi Urano; Katsura Asano; Eiji Obayashi

  The 56th Annual Meeting of the NMR Society of Japan, Tokyo Metropolitan Univ., Hachioji, 2017.11.14-16, Nov. 2017

  
• Observation of in-cell NMR signals of DNA and RNA in living human cells

  Yudai Yamaoki; Ayaka Kiyoishi; Masayuki Miyake; Fumi Kano; Masayuki Murata; Takashi Nagata; Masato Katahira

  The 56th Annual Meeting of the NMR Society of Japan, Tokyo Metropolitan Univ., Hachioji, 2017.11.14-16, Nov. 2017

  
• A robust approach for highly automated NMR structure analysis assisted by deep neural networks

  Naohiro Kobayashi; Takashi Nagata; Yoshikazu Hattori; Shoko Shinya; Julia M. Würz; Peter Güntert; Chojiro Kojima; Toshimichi Fujiwara

  The 56th Annual Meeting of the NMR Society of Japan, Tokyo Metropolitan Univ., Hachioji, 2017.11.14-16, Nov. 2017

  
• Structural determination of Musashi1 RBD2:r(GUAGU) and structural insight of target RNA selection mechanisms

  Ryo Iwaoka; Takashi Nagata; Kengo Tsuda; Takao Imai; Hideyuki Okano; Naohiro Kobayashi; Masato Katahira

  The 56th Annual Meeting of the NMR Society of Japan, Tokyo Metropolitan Univ., Hachioji, 2017.11.14-16, Nov. 2017

  
• Characterization of the cytidine deamination properties of human APOBEC3B by real-time NMR, which are quite different from those of APOBEC3G

  Li Wan; Takashi Nagata; Ryo Morishita; Akifumi Takaori-Kondo; Masato Katahira

  The 44th International Symposium on Nucleic Acids Chemistry, The 1st Annual Meeting of Japan Society of Nucleic Acids Chemistry, Tokyo University of Science (Tokyo), 2017.11.14-16, Nov. 2017

  
• Sphingombium sp. YG1由来guaiacylglycerol-β-guaiacyl ether - Cα位酸化酵素の酵素学的解析と利用

  前田亜鈴悠; 宋晶; 西真郎; 黒澤佳奈子; 市川淳子; 塩谷美夏; 山置佑大; 永田崇; 片平正人; 山田美紗登; 西村裕志; 渡辺隆司; 大田ゆかり

  第62回リグニン討論会、名古屋大学, poster, Oct. 2017

  
• Analysis of peroxidase activity, lignin model degradation of heterologous expressed soluble fungal ligninolytic enzymes

  Meng-I Lin; Keiko Kondo; Takashi Nagata; Masato Katahira

  2017 Taiwan-Japan Biomedical Symposium on Magnetic Resonance, National Cheng Kung University (Tainan), 2017.10.15-17, Oct. 2017

  
• Enzymatic characterization and application of guaiacylglycerol-β-guaiacyl ether – Cα-dehydrogenases from Sphingobium sp. YG1

  Allyn H. Maeda; Jing Song; Shinro Nishi; Kanako Kurosawa; Junko Ichikawa; Mika Shioya; Yudai Yamaoki; Takashi Nagata; Masato Katahira; Misato Yamada; Hiroshi Nishimura; Takashi Watanabe; Yukari Ohta

  第62回リグニン討論会, 名古屋大学（名古屋）2017.10.26-27, Oct. 2017

  
• フラグメント分子軌道法を活用したリグニンβ-O-4還元開裂酵素の機能改変

  嶋根康弘; 黒澤佳奈子; 市川淳子; 前田亜鈴悠; 布浦拓郎; 山置佑大; 永田崇; 片平正人; 高谷光; 吉田亮太; 中村正治; 渡辺隆司; 大田ゆかり

  第62回リグニン討論会, 名古屋大学（名古屋）2017.10.26-27, Oct. 2017

  
• Kinetic studies of the two fungal glutathione-dependent enzymes and their potential roles in the intracellular detoxification and wood-derived compound metabolism

  Wan Hasnidah; Wan Osman; Meng-I Lin; Keiko Kondo; Takashi Nagata; Masato Katahira

  The 62nd Lignin Symposium in Nagoya, 2017.10.26-27, Oct. 2017

  
• Structural analysis of lignocellulosic biomass by solution-state NMR for future biorefinery

  Takashi Watanabe; Hiroshi Nishimura; Chen Qu; Misato Yamada; Shizuka Sakon; Takao Kishimoto; Masaharu Nakamura; Keiko Kondo; Takashi Nagata; Makoto Katahira

  The 8th International Symposium of Advanced Energy Science - Interdisciplinary Approach to Zero Emission Energy (poster), Sep. 2017

  
• Development of the artificial multi-domain enzymes immobilized on the curdlan sheet at low cost.

  Masataka Horiuchi; Takashi Nagata; Masato Katahira; Yoshihiro Kobashigawa; Yasuhiko Suzuki; Masanori Ochiai

  The 8th International Symposium of Advanced Energy Science, Kyoto Univ., Uji, 2017.9.5-6, Sep. 2017

  
• Structure-function relationship of Epstein-Barr Virus EBNA3C NLS and transport receptor

  Go Matsuda; Takashi Nagata; Masato Katahira; Ken-ichi Imadome

  The 8th International Symposium of Advanced Energy Science, Kyoto Univ., Uji, 2017.9.5-6, Sep. 2017

  
• NMR studies for the complex of TLS/FUS protein and G-quadruplexes of telomeric DNA and TERRA, which induces telomere shortening

  Keiko Kondo; Tsukasa Mashima; Takanori Oyoshi; Riki Kurokawa; Naohiro Kobayashi; Takashi Nagata; Masato Katahira

  55th Annual Meeting of the Biophysical Society of Japan, Kumamoto Univ., Kumamoto, 2017.9.19-21., Sep. 2017

  
• Influences of length and concentration of the DNA substrate, as well as the location of the target sequence, on deamination by APOBEC3F

  Li Wan; Takashi Nagata; Masato Katahira

  55th Annual Meeting of the Biophysical Society of Japan, Kumamoto Univ., Kumamoto, 2017.9.19-21., Sep. 2017

  
• An anti-prion aptamer inhibits the formation of prion protein-amyloid β oligomer complex that is related to Alzheimer's disease

  Mamiko IIDA; Tsukasa MASHIMA; Yudai YAMAOKI; Takashi NAGATA; Masato KATAHIRA

  55th Annual Meeting of the Biophysical Society of Japan, Kumamoto Univ., Kumamoto, 2017.9.19-21., Sep. 2017

  
• 18-crown-6を用いるヒドロニウム溶媒和イオン液体の基礎物性

  北田敦; 竹岡駿; 近都康平; 深見一弘; 才村正幸; 永田崇; 片平正人; 邑瀬邦明

  2017年電気化学会秋季大会 2017.9.10-11、長崎大学文教地区キャンパス, Sep. 2017

  
• Development of RNA binding peptides based on tertiary structural information

  Natsuki Watanabe; Tomoaki Kinase; Takashi Nagata; Masato Katahira; Kazuo Harada; Taiichi Sakamoto

  The 8th International Symposium of Advanced Energy Science, Kyoto Univ., Uji, 2017.9.5-6, Sep. 2017

  
• Structural study for the recognition of non-coding RNA by TLS/FUS

  Tsukasa Mashima; Shunsuke Ozawa; Nesreen Hamad; Ryoma Yoneda; Riki Kurokawa; Takashi Nagata; Masato Katahira

  第19回日本RNA学会年会2017.7.19-21富山国際会議場(富山), Jul. 2017

  
• NMR法によるセルラーゼ糖質結合モジュール-リグニン間相互作用の解明

  徳永有希; 大城理志; 永田崇; 近藤敬子; 西村裕志; 片平正人; 渡辺隆司

  第３１回セルラーゼ研究会 長野 2017.7.7-8, Jul. 2017

  
• Conformational change detection of translocated in liposarcoma, TLS, upon binding to various RNAs

  Nesreen Hamad; Tsukasa Mashima; Yudai Yamaoki; Keiko Kondo; Takashi Nagata; Masato Katahira

  第19回日本RNA学会年会 富山国際会議場.2017.7.19-21, Jul. 2017

  
• NMR Analysis of Interaction Mechanism between Carbohydrate Binding Module of Cellulase and Lignin

  Yuki Tokunaga; Satoshi Oshiro; Keiko Kondo; Takashi Nagata; Hiroshi Nishimura; Masato Katahira; Takashi Watanabe

  The 2nd Asia Research Node Symposium on Humanosphere Science.2017.7.19-21.Kyoto Univ. (Uji), Jul. 2017

  
• HIV-1 RRE由来のRNA断片と人工ペプチドの相互作用の解析

  渡邊 なつき; 木名瀬智章; 永田崇; 片平正人; 原田和雄; 坂本泰一

  平成29年度日本生化学会関東支部例会, 東京医科歯科(東京), 2017.6.17, Jun. 2017

  
• Study of RNA-recognition by TLS/FUS and its conformational change via binding

  T. Mashima; S. Ozawa; N. Hamad; R. Yoneda; R. Kurokawa; T. Nagata; M. Katahira

  第17回日本蛋白質科学会年会 2017.6.20-22、仙台国際センター(仙台), Jun. 2017

  
• Highly automated NMR signal assignments using peak-noise recognition assisted by Deep Neural Networks

  Kobayashi, N; Nagata, T; Kojima, C; Fujiwara, T

  Gordon Research Conference. Computational Aspects-Biomol NMR.2017.6.11-16.Grand Summit Hotel Sunday River.(Newy,ME,USA), Jun. 2017

  
• High yield production, activity analysis, and homologous modeling of soluble fungal peroxidases expressed in E. coli

  Meng-I Lin; Keiko Kondo; Takashi Nagata; Masato Katahira

  17th Annual Meeting of the Protein Science Society of Japan, Jun. 2017

  
• Intersegmental transfer of APOBEC3G was monitored by real-time NMR method

  Kamba K; Nagata T; Katahira M

  17th Annual Meeting of the Protein Science Society of Japan, Jun. 2017

  
• Invention of RNA aptamer and ribozyme whose activities switch on in response to K+ via G-quadruples formation

  Yamaoki, Y; Mashima, T; Nagata, T; Katahira, M

  6th International Meeting on Quadruplex Nucleic Acids, May 2017

  
• リグノセルロースの糖－リグニン複合体とその酵素反応の解析

  西村 裕志; 左近 静香; Jenny Arnling Baath; Amanda Ristinmaa; Johanna Nilsson; Gunnar Westman; Lisbeth Olsson; 永田 一真; 永田 崇; 片平 正人; 渡辺 隆司

  第67回日本木材学会大会、九州大学（福岡市）、2017.3.17-19, Mar. 2017

  
• 安定同位体標識法を用いたセルラーゼ糖質結合モジュールとリグニン間相互作用のNMRによる解析

  徳永有希; 大城理志; 永田崇; 近藤敬子; 西村裕志; 片平正人; 渡辺隆司

  第67回日本木材学会大会、九州大学（福岡市）、2017.3.17-19, Mar. 2017

  
• Characterization of Glutathione-Dependent Enzymes from White Rot Fungi

  Wan Hasnidah; Wan Osman; Meng-I Lin; Keiko Kondo; Takashi Nagata; Masato Katahira

  The 2017 Annual Meeting of The Japan Society for Biosci, Biotechnol and Agrochem、ウェスティン都ホテル京都（京都市）、2017.3.17-20, Mar. 2017

  
• Heterologous expression of the ligninolytic enzymes from wood rotting fungi and analysis of peroxidase activity, lignin model degradation, and homologous modeling

  Meng-I Lin; Keiko Kondo; Takashi Nagata; Masato Katahira

  The 2017 Annual Meeting of The Japan Society for Biosci, Biotechnol and Agrochem、ウェスティン都ホテル京都（京都市）2017.3.17-20, Mar. 2017

  
• Characterization of the deamination activity of APOBEC3B by real-time NMR, which is distinct from that of APOBEC3G

  Li Wan; Takashi Nagata; Ryo Morishita; Akifumi Takaori-Kondo; Masato Katahira

  7th Asia-Pacific NMR Symposium, Indian Institute of Science (Bangalore), 2017.02.16-19, Feb. 2017

  
• Sliding and intersegmental transfer along DNA enhance the enzymatic activity of APOBEC3G as revealed by real-time NMR monitoring methods

  Keisuke Kamba; Takashi Nagata; Masato Katahira

  7th Asia-Pacific NMR Symposium, Indian Institute of Science (Bangalore), 2017.02.16-19, Feb. 2017

  
• 木質バイオマス中の糖－リグニン複合体の解析と酵素による分解

  左近静香; 西村裕志; Arnling Baath Jenny; Ristinmaa Amanda; Nilsson Johanna; Westman Gunnar; Olsson Lisbeth; 永田一真; 永田 崇; 片平正人; 渡辺隆司

  第330回生存圏シンポジウム 第13回持続的生存圏創成のためのエネルギー循環シンポジウム—マイクロ波高度利用と先端分析化学—, poster, 2017.1.10, Jan. 2017

  
• NMR study for the recognition of non-coding RNA and DNA by TLS/FUS, a key regulator of the transcriptional repression by cyclin D1 and telomere

  K. Kondo; T. Mashima; T. Oyoshi; R. Yoneda; R. Kurokawa; T. Nagata; M. Katahira

  International Symposium for NMR of Nucleic Acids,Gyeongsang National Univ. (Korea),2017.1.17, Jan. 2017

  
• Development of K+-responsive RNA aptamer and ribozyme, and in-cell NMR of nucleic acids in human cells

  Y. Yamaoki; A. Kiyoishi; T. Mashima; F. Kano; M. Murata; T. Nagata; M. Katahira

  International Symposium for NMR of Nucleic Acids,Gyeongsang National Univ. (Korea),2017.1.17, Jan. 2017

  
• リアルタイムNMRモニタリング法による酵素反応の定量解析及びヒト抗ウイルス因子ＡＰＯＢＥＣ３Ｇの脱アミノ化機構の解明

  神庭圭佑; 永田崇; 片平正人

  定量生物学の会年会、岡崎コンファレンスセンター（岡崎）、2017.1.8-1.9, Jan. 2017

  
• NMR analysis of interaction of TLS/FUS and non-coding RNA/DNA, a key event for regulation of CCND1 transcription and telomere shortening

  Keiko Kondo; Tsukasa Mashima; Takanori Oyoshi; Ryoma Yoneda; Riki Kurokawa; Takashi Nagata; Masato Katahira

  第55回NMR討論会 広島国際会議場, 広島国際会議（広島市）,2016.11.16-18, Nov. 2016

  
• Supramolecular structure and stereoselective enzymatic reaction of wood biomass, and in-cell NMR of nucleic acids

  Yudai Yamaoki; Kazuma Nagata; Ayaka Kiyoishi; Hiroshi Nishimura; Fumi Kano; Masayuki Murata; Yukari Ohta; Takashi Watanabe; Takashi Nagata; Masato Katahira

  第55回NMR討論会 広島国際会議場, 広島国際会議（広島市）,2016.11.16-18, Nov. 2016

  
• 深層学習に支援されたNMRシグナルの自動解析

  小林直宏; 服部良一; 永田崇; 児嶋長次郎; 藤原敏道

  第55回NMR討論会 広島国際会議場, 広島国際会議（広島市）,2016.11.16-18, Nov. 2016

  
• Structural basis of RNA-recognition by TLS/FUS which repress cyclin D1 via binding to a non-coding RNA

  Tsukasa Mashima; Shunsuke Ozawa; Keiko Kondo; Nesreen Hamad; Ryoma Yoneda; Riki Kurokawa; Takashi Nagata; Masato Katahira

  第39回日本分子生物学会年会、パシフィコ横浜（横浜市）、2016.11.30-12.2, Nov. 2016

  
• The effects of prion protein and a RNA molecule that binds to prion protein on Aβ fibrillation

  Mamiko IIDA; Tsukasa MASHIMA; Yudai YAMAOKI; Takashi NAGATA; Masato KATAHIRA

  第54回日本生物物理学会年会、つくば国際会議場（つくば市）、2016.11.25-27, Nov. 2016

  
• Sliding as well as intersegmental transfer on DNA enhances target search of human anti-viral factor APOBEC3G: Insight by the real-time NMR study

  Kamba, K; Nagata, T; Kahitara, M

  第54回日本生物物理学会年会、つくば国際会議場（つくば市）、2016.11.25-27, Nov. 2016

  
• Characterization of the deamination activity of APOBEC3B by real-time NMR, which is distinct from that of APOBEC3G

  Li Wan; Takashi Nagata; Ryo Morishita; Akifumi Takaori-Kondo; Masato Katahira

  第54回日本生物物理学会年会、つくば国際会議場（つくば市）、2016.11.25-27, Nov. 2016

  
• Analysis of β-O-4 cleaving enzyme, GST4, from the marine bacterium, Novosphingobium sp. MBES04

  Yasuhiro Shimane; Allyn H Maeda; Mika Shioya; Kanako Kurosawa; Jyunko Ichikawa; Takuro Nunoura; Yudai Yamaoki; Takashi Nagata; Masato Katahira; Hikaru Takaya; Ryota Yoshida; Masaharu Nakamura; Takashi Watanabe; Yukari Ohta

  第61回リグニン討論会、京都大学（宇治市）、2016.10.27-28, Oct. 2016

  
• Heterologous expression and structure-activity relationship analysis of the oxidative enzymes from wood rotting fungi that are involved in lignocellulose degradation

  Meng-I Lin; Keiko Kondo; Takashi Nagata; Masato Katahira

  第61回リグニン討論会、京都大学（宇治市）、2016.10.27-28, Oct. 2016

  
• Analysis of interaction between lignin and peptides for lignocellulosic biorefinery

  Asako Yamaguchi; Takashi Suetomi; Satoshi Oshiro; Yuki Tokunaga; Hiroshi Nishimura; Takashi Nagata; Tsukasa Mashima; Masato Katahira; Katsuhiro Isozaki; Masaharu Nakamura; Takashi Watanabe

  第61回リグニン討論会、京都大学（宇治市）、2016.10.27-28, Oct. 2016

  
• Investigation of the interactions between eukaryotic initiation factors implicated during ribosomal scanning and start codon recognition

  NAGATA Takashi

  The 42nd Naito Conference on “In the Vanguard of Structural Biology: Revolutionizing Life Sciences” CHÂTERAISÉ Gateaux Kingdom SAPPORO, Sapporo, 2016.10.4-7, Oct. 2016, Peer-reviewed

  
• Integrating strategy for production of bioethanol and lignin derivatives from rice straw

  Khattab, S; Kondo, K; Lin, M. I; Mashima, T; Nagata, T; Katahira, M

  The 7th International Symposium of Advanced Energy Science -Frontier of Zero Emission Energy-, Sep. 2016

  
• Low-cost degradation of azo dyes using the GRP-tagged azoreductase combined with NADPH regeneration enzymes immobilized on the curdlan sheet

  Masataka Horiuchi; Yasuhiko Suzuki; Masanori Ochiai; Takashi Nagata; Masato Katahira

  The 7th International Symposium of Advanced Energy Science.Uji, Sep. 2016

  
• Development of artificial RNA and artificial peptide to control gene expression by using NMR

  Yumi Takeda; Takashi Nagata; Ryo Amano; Yusuke Nomura; Kazuo Harada; Colin A. Smith; Masato Katahira; Taiichi Sakamoto

  The 7th International Symposium of Advanced Energy Science.Uji, Sep. 2016

  
• Non-coding RNA/DNA recognition by TLS/FUS that causes repression of cyclin D1 transcription and telomere elongation

  Kondo, K; Mashima, T; Oyoshi, T; Yoneda, R; Kurokawa, R; Nagata, T; Katahira, M

  The 43rd International Symposium on Nucleic Acids Chemistry, Kumamoto Univ., Kumamoto, 2016.9.27-29, Sep. 2016

  
• Invention of K+-responsive Tat-binding RNA aptamer and hammerhead ribozyme, and in-cell NMR of nucleic acids

  Yudai Yamaoki; Ayaka Kiyoishi; Tsukasa Mashima; Fumi Kano; Masayuki Murata; Takashi Nagata; Masato Katahira

  The 43rd International Symposium on Nucleic Acids Chemistry, Kumamoto Univ., Kumamoto, 2016.9.27-29, Sep. 2016

  
• カリウムイオン応答性Tat結合RNAアプタマーおよびハンマーヘッドリボザイムの創製およびin-cell NMR法による細胞内核酸の観測

  山置 佑大; 清石 彩華; 真嶋 司; 加納 ふみ; 村田 昌之; 永田 崇; 片平 正人

  第10回バイオ関連化学シンポジウム、第31回生体機能関連化学シンポジウム、第19回バイオテクノロジー部会シンポジウム、石川県立音楽堂（金沢市）、2016.9.7-9.9, Sep. 2016

  
• NMR studies of non-coding RNA and DNA recognition by TLS/FUS which induces transcriptional repression of cyclin D1 and telomere shortenin

  Kondo, K; Mashima, T; Oyoshi, T; Yoneda, R; Kurokawa, R; Nagata, T; Katahira, M

  The XXVIIth International Conference on Magnetic Resonance in Biological Systems, Aug. 2016

  
• Deamination mechanism coupled with sliding along single-stranded DNA of anti-HIV factor APOBEC3G as investigated by real-time NMR spectroscopy

  Kamba, K; Nagata, T; Katahira M

  The XXVIIth International Conference on Magnetic Resonance in Biological Systems, Aug. 2016

  
• Accurate and molecular-size-tolerant NMR quantitation of diverse compounds, and real-time monitoring of enzymatic reaction

  Okamura, H; Kamba, K; Nishimura, H; Kigawa, T; Watanabe, T; Nagata, T; Katahira, M

  The XXVIIth International Conference on Magnetic Resonance in Biological Systems, Kyoto International Conference Center、2016.21-26, Aug. 2016

  
• K+-responsive Activation of Ribozyme System via Structural Transition from Duplex to Dual-quadruplex Requiring no Heating and Cooling Treatment

  Yudai Yamaoki; Takashi Nagata; Tsukasa Mashima; Masato Katahira

  The XXVIIth International Conference on Magnetic Resonance in Biological Systems, Kyoto International Conference Center、2016.21-26, Aug. 2016

  
• Analysis of molecular interaction of peptides with lignin for lignocellulosic biorefinery

  Watanabe, T; Yamaguchi, A; Oshiro, S; Suetomi, T; Nishimura, H; Nagata, T; Mashima, T; Katahira, M; Isozaki, K; Takaya, H; Nakamura, M

  4th Symposium on Biotechnology applied to Lignocelluloses. CSIC downtown Campus (Madrid), 2016.6.19-22, Jun. 2016

  
• ヒト抗HIV因子APOBEC3Gの標的探索及び脱アミノ化には静電相互作用が支配的である

  神庭 圭佑; 永田 崇; 片平正人

  新学術領域「柔らかな分子系」第 16 回 ワークショップ, Jun. 2016

  
• カリウムイオンを認識して活性をオフからオンへと切り替えるTat結合RNAアプタマーおよびハンマーヘッドリボザイムの開発

  山置佑大; 永田崇; 真嶋司; 片平正人

  新学術領域「柔らかな分子系」第 16 回 ワークショップ, Jun. 2016

  
• NMR analysis of interaction between TLS/FUS and non-coding RNA which causes transcriptional repression of cyclin D1

  真嶋司; 小澤 駿介; 近藤 敬子; 永田崇; 黒川 理樹; 片平 正人

  The 16th Annual Meeting of the Protein Science Society of Japan, Fukuoka, Jun 2016, Jun. 2016

  
• The effects of prion protein and RNA molecule that targets prion protein on Aβ fibrillation

  Mamiko IIDA; Tsukasa MASHIMA; Yudai YAMAOKI; Takashi NAGATA; Masato KATAHIRA

  The 16th Annual Meeting of the Protein Science Society of Japan, Fukuoka, Jun 2016, Jun. 2016

  
• NMR analysis of the recognition of non-coding RNA and DNA by TLS/FUS which causes transcriptional repression of cyclin D1 and telomere shortening

  Tsukasa Mashima; Keiko Kondo; Takanori Oyoshi; Ryoma Yoneda; Riki Kurokawa; Takashi Nagata; Masato Katahira

  The RNA Society of Japan 18th Annual Meeting AND The 21st Annual Meeting of the RNA Society, Jun. 2016

  
• Binding properties of high-affinity RNA aptamers against AML1 Runt domain

  Ryo Amano; Kenta Takada; Yoichiro Tanaka; Takashi Nagata; Masato Katahira; Yoshikazu Nakamura; Tomoko Kozu; Taiichi Sakamoto

  The RNA Society of Japan 18th Annual Meeting AND The 21st Annual Meeting of the RNA Society, Jun. 2016

  
• K+-responsive activation of dual-quadruplex forming ribozyme system requiring no heating and cooling treatment

  Yudai Yamaoki; Tsukasa Mashima; Takashi Nagata; Masato Katahira

  The RNA Society of Japan 18th Annual Meeting AND The 21st Annual Meeting of the RNA Society, Jun. 2016

  
• Binding properties of RNA aptamer against AML1 Runt domain

  R. Amano; K. Takada; T. Nagata; Y. Nomura; J. Fukunaga; Y. Tanaka; M. Katahira; Y. Nakamura; T. Kozu; T. Sakamoto

  Aptamer 2016, St Hilda's College, Oxford, UK, 2016.4.4-5, Apr. 2016

  
• Tandem GGA repeat G-quadruplex as an anti-prion protein aptamer and a K+-responsive structural/functional switching device

  T. Nagata; T. Mashima; Y. Yamaoki; F. Nishikawa; Y.O. Kamatari; S. Nishikawa; K. Kuwata; M. Katahira

  Aptamer 2016, St Hilda's College, Oxford, UK, 2016.4.4-5, Apr. 2016

  
• 転写因子AML1のDNA結合部位を標的とする高親和性RNAアプタマーの開発と解析

  天野亮; 高田健多; 田中陽一郎; 永田崇; 片平正人; 中村義一; 神津知子; 坂本泰一

  第5回日本生物物理学会関東支部会、桐生, Mar. 2016

  
• Binding properties of RNA aptamer that binds to the transcription factor AML1 Runt domain

  R. Amano; K. Takada; Y. Tanaka; T. Nagata; M. Katahira; Y. Nakamura; T. Kozu; T. Sakamoto

  The 8th Takeda Science Foundation Symposium on PharmaSciences, Osaka, Jan. 2016

  
• NMR study of RNA aptamer that binds to the transcription factor AML1 Runt domain

  T. Sakamoto; R. Amano; Y. Nomura; T. Nagata; M. Katahira; J. Fukunaga; Y. Tanaka; Y. Nakamura; T. Kozu

  The 8th Takeda Science Foundation Symposium on PharmaSciences, Osaka, Jan. 2016

  
• 転写因子AML1 Runt domainを標的とした高親和性RNAアプタマーの特徴

  高田健多; 天野亮; 田中陽一郎; 永田崇; 片平正人; 中村義一; 神津知子; 坂本泰一

  第38回日本分子生物学会年会、神戸, Dec. 2015

  
• Analysis of the biocharacteristics of APOBEC3F by real-time NMR

  Li Wan; Keisuke Kamba; Takashi Nagata; Masato Katahira

  第38回日本分子生物学会年会、神戸, Dec. 2015

  
• Heterologous expression and struature-activity relationship analysis of the oxidative enzymes involved in lignosellulose degradatioin from wood rotting fungi

  Mengi Lin; Takashi Nagata; Bunzo Mikami; Masato Katahira

  第38回日本分子生物学会年会、神戸, Dec. 2015

  
• NMRによる実時間酵素活性アッセイにより抗ウィルス因子APOBEC3Gの脱アミノ化機構を明らかにする

  神庭圭佑; 永田崇; 片平正人

  第38回日本分子生物学会年会, Dec. 2015

  
• AML1 (RUNX1)タンパク質のRuntドメインとRNAアプタマーの相互作用のNMR解析

  天野亮; 高田健多; 田中陽一郎; 永田崇; 片平正人; 野村祐介; 福永淳一; 中村義一; 神津知子; 坂本泰一

  日本核酸医薬学会第1回年会、京都, Nov. 2015

  
• 海洋性Novosphingubium属細菌に由来するリグニンモデル2量体β-O-4結合開裂酵素群の酵素学的解析

  大田ゆかり; 黒澤佳奈子; 永田崇; 片平正人; 西村裕志; 渡辺隆司; 長谷川良一; 秦田勇二

  第60回リグニン討論会、つくば, Nov. 2015

  
• リアルタイムNMR法の新たな展開ー抗HIVタンパク質APOBECG3Gの認識ヌクレチド、DNA上のスライディング及びエピジェネクスとの関連に関する新知見ー

  神庭圭佑; 永田崇; 片平正人

  第54回NMR討論会、千葉, Nov. 2015

  
• 転写因子AML1 Runt domainに結合する高親和性RNAアプタマーのNMR解析

  高田健太; 天野亮; 田中陽一郎; 永田崇; 片平正人; 中村義一; 神津知子; 坂本泰一

  第54回NMR討論会、千葉, Nov. 2015

  
• 木質バイオマスの特性を決めるリグニンー多糖結合様式の決定

  神谷明宏; 西村裕志; 永田一真; 永田崇; 渡辺隆司; 片平正人

  第54回NMR討論会、千葉, Nov. 2015

  
• 異常型プリオン蛋白質の産生を抑制する四重鎖核酸の構造解析

  真嶋司; 西川富美子; 鎌足雄司; 永田崇; 西川諭; 桑田一夫; 片平正人

  第９回バイオ関連化学シンポジウム、熊本, Oct. 2015

  
• カリウムイオンを認識して活性がスイッテングするTat結合RNAアプタマーおよびハンマーヘッドリボザイムの創製

  山置佑大; 真嶋司; 永田崇; 片平正人

  第９回バイオ関連化学シンポジウム、熊本, Oct. 2015

  
• NMR analysis of lignin-carbohydrate complexes of wood biomass

  Akihiro Kamiya; Hiroshi Nishimura; Kazuma Nagata; Takashi Nagata; Takashi Watanabe; Masato Katahira

  6th Int. Symp. Adv. Energy Sci., Kyoto, Sep. 2015

  
• Structural analysis of lignin by ultra-high sensitivity NMR for biorefinery

  T.Watanabe; H.Nishimura; T.Kishimoto; M.Nakamura; C. Qu; K. Nagata; T.Nagata; M.Katahira

  6th Int. Symp. Adv. Energy Sci., poster, Kyoto, Sep. 2015

  
• NMR study of the recognition of non-coding RNA and DNA by TLS/FUS, a key regulator of cyclin D1

  Kondo, K; Mashima, T; Oyoshi, T; Kurokawa, R; Nagata, T; Katahira, M

  The 42nd International Symposium on Nucleic Acids Chemistry, Himeji, Sep. 2015

  
• Nucleic acid determinants of deamination by human anti-HIV factor, APOBEC3G, as revealed by real-time NMR method

  Kamba, K; Nagata, T; Katahira, M

  The 42nd International Symposium on Nucleic Acids Chemistry, Himeji, Sep. 2015

  
• Structural and biochemical studies on eIF1 with eIF3c and eIF5; rearrangement of subunit interaction for accurate recognition of AUC start codon

  Obayashi, E; Urano, T; Asano, K; Katahira, M; Nagata, T

  The 6th International Symposium of Advanced Energy Science～Towards the Realization of Zero-Emission Energy～, Sep. 2015

  
• NMR analyses of RNA-peptide complexes for the development of biomolecules which regulate gene expression

  R. Amano; Y. Nomura; T. Nagata; N. Kobayashi; Y. Mori; J. Fukunaga; Y. Tanaka; M. Katahira; Y. Nakamura; T. Kozu; T. Sakamoto

  The 6th International Symposium of Advanced Energy Science～Towards the Realization of Zero-Emission Energy～, Sep. 2015

  
• The deamination mechanism of APOEC3G required for effective gene mutation in viral genome

  NAGATA Takashi

  神庭 圭佑、永田 崇、片平 正人, Sep. 2015

  
• Real-time NMR methods reveals deamination mechanism by human antiviral factor APOBEC3G

  Keisuke Kamba; Takashi Nagata; Masato Katahira

  6th Asia-Pacific NMR Symposium.Hong Kong, Aug. 2015

  
• New strategy for high-throughput NMR analysis of biomolecules using the NMR database BMRB and tools for automated NMR analysis, MagRO, FLYA and CYANA

  Naohiro Kobayashi; Masashi Yokochi; Takeshi Iwata; Bikash Ranjan Sahoo; Takashi Nagata; John L. Markley; Eldon L. Ulrich; Elena Schmidt; Peter Güntert; Chojiro Kojima; Toshimichi Fujiwara

  International Society of Magnetic Resonance.Shanghai, Aug. 2015

  
• 転写抑制やテロメア短縮を引き起こすTLS/FUSと長鎖非コードRNAおよびDNA間結合の構造基盤

  近藤 敬子; 真嶋 司; 大吉 崇文; 黒川 理樹; 永田 崇; 片平 正人

  RNA meeting 2015.札幌, Jul. 2015

  
• AML1タンパク質のDNA結合ドメインに対するRNAアプタマーの特性

  高田 健多; 天野 亮; 田中 陽一郎; 永田 崇; 片平 正人; 中村 義一; 神津 知子; 坂本泰一

  RNA meeting 2015.札幌, Jul. 2015

  
• AML1 タンパク質の Runt ドメインに結合する RNA アプタマーの取得と解析

  高田健多; 天野亮; 田中陽一郎; 永田崇; 片平正人; 中村義一; 神津知子; 坂本泰一

  平成27年度日本生化学会関東支部例会, Jun. 2015

  
• Development of new methods to compensate distortion of quantitation caused by difference in molecular weight (transverse relaxation time)

  Okamura, H; Nishimura, H; Nagata, T; Kigawa, T; Watanabe, T; Katahira, M

  53rd Ann. Meeting NMR Soc. Japan, 05 Nov. 2014, Peer-reviewed

  
• Characterization of RNA aptamer targeting the DNA binding domain of AML1 protein

  Takada, K; Amano, R; Tanaka, Y; Nagata, T; Katahira, M; Nakamura, Y; Kozu, T; Sakamoto, T

  The 41st International Symposium on Nucleic Acids Chemistry, Nov. 2014

  
• CCND1転写抑制とテロメア短縮をもたらすTLS/FUSによる非コードRNAとDNA認識機構のNMR法による解明

  近藤敬子; 真嶋司; 山置佑大; 大吉崇文; 黒川理樹; 永田崇; 片平正人

  第37回日本分子生物学会年会.横浜, Nov. 2014

  
• Deamination mechanism of an anti-HIV APOBEC3G coupled with sliding on single-stranded DNA as analyzed by real-time NMR monitoring method

  K. Kanba; A. Furukawa; K. Sugase; T. Nagata; M. Katahira

  The 41st International Symposium on Nucleic Acids Chemistry.Fukuoka, Nov. 2014

  
• 分子量(横緩和時間)の差に由来する物質定量のゆがみを克服する新しい測定法の開発

  岡村英保; 西村裕志; 永田崇; 木川隆則; 渡辺隆司; 片平正人

  第53回NMR討論会.吹田, Nov. 2014

  
• 神経系幹細胞の未分化状態維持と発癌に関わるMusashi1タンパク質の構造基盤

  岩岡諒; 小林直宏; 津田健吾; 今井貴雄; 岡野栄之; 永田崇; 片平正人

  第53回NMR討論会.吹田, Nov. 2014

  
• MagRO-NMRView、FLYAによる高度に自動化されたＮＭＲデータ解析

  小林直宏; Bikash Ranjan Sahoo; 永田崇; 服部良一; Elena Schmidt; Peter Güntert; 児嶋長次郎; 藤原敏道

  第53回NMR討論会.吹田, Nov. 2014

  
• Creation of novel Tat-binding aptamer and ribozyme whose activities switch on in response to K+ via quadruplex formation

  Y. Yamaoki; T. Mashima; T. Nagata; M. Katahira

  The 41st International Symposium on Nucleic Acids Chemistry.Fukuoka, Nov. 2014

  
• 神経系幹細胞の未分化状態維持と発癌に関わるMusashi1タンパク質RBD2の構造機能解析

  岩岡諒; 小林直宏; 津田健吾; 今井貴雄; 岡野栄之; 永田崇; 片平正人

  第37回日本分子生物学会年会.横浜, Nov. 2014

  
• 実時間NMR法による抗HIV因子APOBEC3Gのスライディングにカップルした脱アミノ化機構の解析

  神庭圭佑; 永田崇; 片平正人

  第37回日本分子生物学会年会.横浜, Nov. 2014

  
• AML1 Runt domainとRNAアプタマーの相互作用のNMR解析

  高田健多; 天野亮; 永田崇; 片平正人; 野村祐介; 田中陽一郎; 中村義一; 神津知子; 坂本泰一

  第37回日本分子生物学会年会.横浜, Nov. 2014

  
• Development of new NMR methods for correct quantitation on biomass components

  Okamura, H; Nishimura, H; Nagata, T; KIgawa, T; Watanabe, T; Katahira, M

  5th Int. Symp. Adv. Energy Sci., Kyoto, 01 Oct. 2014

  
• NMR study of the Interaction between MDM2 and a Peptide Selected by mRNA Display

  T. Nagata; K. Shirakawa; N. Kobayashi; H. Shiheido; N. Tabata; Y. Sakuma-Yonemura; K. Horisawa; M. Katahira; N. Doi; H. Yanagawa

  Biophysical Society Thematic Meeting Disordered Motifs and Domains in Cell Control.Dublin, Oct. 2014

  
• Real-time NMR monitoring of enzymatic reaction of anti-HIV protein, structure of anti-prion RNA aptamer and wood biomass analysis

  Kanba, K; Mashima, T; Okamura, H; Furukawa, A; Sugase, K; Nishimura, H; Watanabe, T; Nagata, T; Katahira, M

  The 5th Japan-Taiwan NMR symposium.Sapporo, Sep. 2014

  
• Development of Tat-binding aptamer and ribozyme which switch their activities in response to K+

  Y. Yamaoki; T. Mashima; T. Nagata; M. Katahira

  第52回日本生物物理学会年会.札幌,2014.9.25-27, Sep. 2014

  
• Screening for novel aptamer against prion protein and its structural study

  T. Mashima; F. Nishikawa; Y.O. Kamatari; T. Nagata; S. Nishikawa; K. Kuwata; M. Katahira

  第52回日本生物物理学会年会.札幌,2014.9.25-27, Sep. 2014

  
• Substrate Recognition and Sliding Properities of an Anti-HIV Factor APOBEC3G analyzed by Real-time NMR Monitoring Strategy

  K. Kamba; T. Nagata; M. Katahira

  第52回日本生物物理学会年会.札幌,2014.9.25-27, Sep. 2014

  
• NMR analysis of the interaction between an artificial RNA and a transcription factor

  K. Takada; R. Amano; T. Nagata; M. Katahira; Y. Nomura; Y. Tanaka; Y. Nakamura; T. Kozu; T. Sakamoto

  The 5th International Symposium of Advanced Energy Science -Contribution to Zero-Emission Energy-,Uji, Sep. 2014

  
• Functional mechanism of an anti-HIV protein, APOBEC3G, as revealed by real-time NMR monitoring of its enzymatic reaction

  K. Kanba; A. Furukawa; K. Sugase; R. Morishita; T. Nagata; M. Katahira

  XXVIth International Conference on Magnetic Resonance in Biological Systems.Dallas, Aug. 2014

  
• PROPERTIES OF RNA APTAMER BINDING TO AML1 RUNT DOMAIN

  R. Amano; Y. Nomura; T. Nagata; N. Kobayashi; Y. Mori; K. Takada; J. Fukunaga; Y. Tanaka; M. Katahira; Y. Nakamura; T. Kozu; T. Sakamoto

  XXI ROUND TABLE ON NUCLEOSIDES, NUCLEOTIDES AND NUCLEIC ACIDS CHEMICAL BIOLOGY OF NUCLEIC ACIDS.Poland, Aug. 2014

  
• Functional mechanism of anti-HIV protein, APOBEC3G, elucidated by real-time monitoring of enzymatic reaction, and anti-prion activity of an RNA aptamer with its structural basis

  K. Kanba; A. Furukawa; K. Sugase; R. Morishita; T. Nagata; M. Katahira

  The 45th Annual Meeting of Korean Magnetic Resonance Society, Jul. 2014, Invited

  
• カリウムイオンを感知して自らの活性をスイッチングするTat捕捉アプタマーおよびリボザイムの創製

  山置佑大; 真嶋司; 永田崇; 片平正人

  第16回日本RNA学会年会.名古屋, Jul. 2014

  
• Structural and functional analysis of Musashi, a neural and oncogenic RNA-binding protein

  R. Iwaoka; T. Nagata; T. Imai; H; Okano; M. Katahira

  第16回日本RNA学会年会.名古屋, Jul. 2014

  
• AML1タンパク質のRuntドメインに結合するRNAアプタマーの取得と解析

  高田健多; 天野亮; 永田崇; 片平正人; 中村義一; 神津知子; 坂本泰一

  日本生化学会関東支部定例会.水戸, Jun. 2014

  
• The structural and energetic basis for the high-potency inhibition of MDM2-p53 interaction by MDM2-binding peptide obtained with IVV method

  T. Nagata; K. Shirakawa; B.R. Sahoo; H. Shiheido; K. Horisawa; M. Katahira; N. Kobayashi; N. Doi; H. Yanagawa

  第14回日本蛋白質科学会年会.横浜, Jun. 2014

  
• CCND1転写抑制とテロメア短縮に関与する天然変性蛋白質TLS/FUSによる非コードRNAとDNAの認識機構のNMR法による解明

  近藤敬子; 真嶋司; 大吉崇文; 黒川理樹; 永田崇; 片平正人

  第14回日本蛋白質科学会年会.横浜, Jun. 2014

  
• NMRによるAML1 Runtドメインと RNAアプタマーの相互作用の解析

  天野亮; 野村祐介; 永田崇; 小林直宏; 高田健太; 福永淳一; 田中陽一郎; 片平正人; 中村義一; 神津知子; 坂本泰一

  平成26年度 日本分光学会年次講演会、和光、2014.5, May 2014

  
• Statistical Thermodynamics for The Molecular Recognition Accompanied by a Global Structural Change of a Molecule

  T. Hayashi; H. Oshima; T. Mashima; T. Nagata; M. Katahira; M. Kinoshita

  Nagoya Symposium on Deplection Forces: Celebrating the 60th Anniversary of the Asakura-Oosawa Theory.Nagoya, Mar. 2014

  
• Statistical Thermodynamics for Binding of an RNA Aptamer and a Partial Peptide of a Prion Protein

  T. Hayashi; H. Oshima; T. Mashima; T. Nagata; M. Katahira; M. Kinoshita

  58th Annual Meeting of the Biophysical Society of USA.San Francisco, Feb. 2014

  
• 3P032 Substrate Recognition and Sliding Properties of an Anti-HIV Factor APOBEC3G analyzed by Real-time NMR Monitoring Strategy(01B. Protein: Structure & Function,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

  Kamba Keisuke; Nagata Takashi; Katahira Masato

  Seibutsu Butsuri, 2014

  
• 1P121 Search for novel aptamer against prion protein and its structural study(05A. Nucleic acid : Structure & Property,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

  Mashima Tsukasa; Nishikawa Fumiko; Kamatari Yuji O.; Nagata Takashi; Nishikawa Satoshi; Kuwata Kazuo; Katahira Masato

  Seibutsu Butsuri, 2014

  
• 神経系幹細胞の未分化状態維持に関わる Musashi1 タンパク質の機能発現の分子メカニズム

  岩岡諒; 櫻井悠子; 鍵矢悦久; 今井貴雄; 岡野栄之; 永田崇; 片平正人

  第36回日本分子生物学会年会.神戸, Dec. 2013

  
• Development of quadruplex hammerhead ribozyme which switches on its ribozyme activity: introduction of quadruplex-forming complementary DNA to repress a basal activity

  Y. Yamaoki; T. Mashima; T. Nagata; M. Katahira

  第36回日本分子生物学会年会.神戸, Dec. 2013

  
• 四重鎖構造を形成する核酸の抗プリオン活性

  真嶋司; 西川富美子; 鎌足雄司; 才村正幸; 永田崇; 西川諭; 桑田一夫; 片平正人

  第36回日本分子生物学会年会.神戸, Dec. 2013

  
• ヒト抗ウィルス因子 APOBEC3G の基質認識機構及び Vif による APOBEC3G 阻害機構の解明に向けて

  神庭圭佑; 永田崇; 片平正人

  第36回日本分子生物学会年会.神戸, Dec. 2013

  
• mRNA ディスプレイ法により選択された高親和性MDM2結合ペプチドＭＩＰに基づくＭＤＭ2－ｐ53相互作用阻害剤の開発

  白川貴恵; 永田崇; 小林直弘; 始平堂弘和; 新倉啓介; 片平正人; 堀澤健一; 土居信英; 柳川弘志

  第36回日本分子生物学会年会.神戸, Dec. 2013

  
• 転写因子AML1に対して複数の結合部位を持つ高親和性RNAアプタマーの解析

  天野亮; 野村祐介; 永田崇; 森瑶子; 福永淳一; 田中陽一郎; 片平正人; 中村義一; 神津知子; 坂本泰一

  第36回日本分子生物学会年会.神戸, Dec. 2013

  
• Dual-quadruplex forming ribozyme distinctly switches on its activity in response to K+

  Y. Yamaoki; T. Mashima; T. Nagata; M. Katahira

  The 40th International Symposium on Nucleic Acids Chemistry 2013.Yokohama, Nov. 2013

  
• Origin of the anti-prion activity of quadruplex

  T. Mashima; F. Nishikawa; Y.O. Kamatari; M. Saimura; T. Nagata; S. Nishikawa; K. Kuwata; M. Katahira

  The 40th International Symposium on Nucleic Acids Chemistry 2013.Yokohama, Nov. 2013

  
• Structural basis for the inhibition of MDM2:p53 interaction by highly selective MDM2-binding peptide obtained with IVV method

  NAGATA Takashi

  第52回日本核磁気共鳴学会.金沢, Nov. 2013

  
• Multi-site binding of high affinity aptamers against AML1 Runt domain

  R. Amano; Y. Nomura; T. Nagata; N. Kobayashi; Y. Mori; J. Fukunaga; Y. Tanaka; M. Katahira; Y. Nakamura; T. Kozu; T. Sakamoto

  The 40th International Symposium on Nucleic Acids Chemistry 2013.Yokohama, Nov. 2013

  
• Aptamer that exerts anti-prion activity and intelligent ribozyme whose activity awitches in reponse to K+

  M. Katahira; T. Mashima; Y. Yamaoki; T. Nagata; F. Nishikawa; S. Nishikawa; Y. Kamatari; K. Kuwata

  日本生物物理学会第51回年会.京都, Oct. 2013

  
• Structual description for the strong binding of the peptide selected by mRNA display to MDM2

  T. Nagata; K. Shirakawa; N. Kobayashi; H. Shiheido; M. Katahira; K. Horisawa; N. Doi; H. Yanagawa

  5th Asia-Pacific NMR Symposium.Brisbane, Oct. 2013

  
• Statistical Thermodynamics for Binding of an RNA Aptamer and a Partial Peptide of a Prion Protein

  T. Hayashi; H. Oshima; T. Mashima; T. Nagata; M. Katahira; M. Kinoshita

  Seibutsu Butsuri, Oct. 2013

  
• NMR analysis of the interaction between an artificial RNA and atranscription factor

  R. Amano; Y. Nomura; T. Nagata; N. Kobayashi; Y. Mori; J. Fukunaga; Y. Tanaka; M. Katahira; Y. Nakamura; T. Kozu; T. Sakamoto

  The 4th International Symposium of Advanced Energy Science.Uji, Sep. 2013, Invited

  
• Mechanism of high affinity and anti-prion activity of anti-prion aptamer

  T. Mashima; F. Nishikawa; Y.O. Kamatari; H. Fujiwara; M. Saimura; T. Nagata; T. Kodaki; S. Nishikawa; K. Kuwata; M. Katahira

  The 10th Korea-Japan Bilateral Symposium on Biological NMR.Seoul, Jul. 2013

  
• カリウムイオンによって活性がスイッチングする四重鎖リボザイムの創製：四重鎖形成相補鎖によるスイッチング性能の向上

  山置佑大; 真嶋司; 永田崇; 片平正人

  第15回日本RNA学会年会.松山, Jul. 2013

  
• プリオン蛋白質を標的とするＲＮＡアプタマーの認識メカニズムとその抗プリオン活性

  真嶋司; 西川富美子; 鎌足雄司; 藤原弘道; 遠藤美紗; 永田崇; 小瀧努; 西川諭; 桑田一夫; 片平正人

  第13回 日本蛋白質科学会年会.鳥取, Jun. 2013

  
• NMR実時間計測法により抗ウィルス因子APOBEC3Gのシチジン脱アミノ化反応の配列依存性を評価する

  神庭圭佑; 小瀧努; 永田崇; 片平正人

  第13回日本蛋白質科学学会年会.鳥取, Jun. 2013

  
• 転写因子AML1を標的としたRNAアプタマーによるDNAの擬態

  天野亮; 野村祐介; 永田崇; 森瑶子; 福永淳一; 田中陽一郎; 片平正人; 中村義一; 神津知子; 坂本泰一

  第8回日本ケミカルバイオロジー学会.東京, Jun. 2013

  
• 2P125 Enhancement of a Quadruplex-ribozyme activity in response to K^+: a quadruplex-forming complementary DNA enables accurate switching(05A. Nucleic acid: Structure & Property,Poster)

  Yamaoki Yudai; Mashima Tsukasa; Nagata Takashi; Katahira Masato

  Seibutsu Butsuri, 2013

  
• 2P126 Structural basis of anti-prion aptamer and its activity(05A. Nucleic acid: Structure & Property,Poster)

  Mashima Tsukasa; Nishikawa Fumiko; Kamatari Yuji O.; Saimura Masayuki; Nagata Takashi; Nishikawa Satoshi; Kuwata Kazuo; Katahira Masato

  Seibutsu Butsuri, 2013

  
• 3SCA-02 Aptamer that exerts anti-prion activity and intelligent ribozyme whose activity switches in response to K^+(3SCA Frontier of functional nucleic acids toward elucidation of biological events and nucleic acid medicine,Symposium)

  Katahira Masato; Mashima Tsukasa; Yamaoki Yuudai; Nagata Takashi; Nishikawa Fumiko; Nishikawa Satoshi; Kamatari Yuji; Kuwata Kazuo

  Seibutsu Butsuri, 2013

  
• Anti-prion activity of an RNA aptamer and its structural basis.

  Tsukasa Mashima; Fumiko Nishikawa; Yuji O Kamatari; Hiromichi Fujiwara; Masayuki Saimura; Takashi Nagata; Tsutomu Kodaki; Satoshi Nishikawa; Kazuo Kuwata; Masato Katahira

  Nucleic acids research, Jan. 2013

  
• Molecular recognition between an aptamer and IDP that dirupts brain function

  Takashi Nagata

  The 2nd International Symposium of Intrinsically Disordered Proteins，2013.Yokohama, Jan. 2013

  
• Creation of Novl Ribozyme whose Activity Switches on in Response to K+ via Quadruples Formation

  Yamaoki, Y; Mashima, T; Sakurai, Y; Hara, Y; Kodaki, T; Nagata, T; Katahira, M

  第35回日本分子生物学会年会.福岡, Dec. 2012

  
• NMR Real-time Monitoring of the Deamination Reaction of Human Antiviral Factor APOBEC3G

  K. Kamba; A. Furukawa; T. Kodaki; T. Nagata; M. Katahira

  第35回日本分子生物学会年会.福岡, Dec. 2012

  
• Interaction of RNA Aptamer with Prion Protein and Monitoring of Biodegradation of Wood Biomass

  Tsukasa Mashima; Hiroshi Nishimura; Hideyasu Okamura; Fumiko Nishikawa; Yuji O. Kamatari; Takashi Nagata; Satoshi Nishikawa; Kazuo Kuwata; Takashi Watanabe; Masato Katahira

  The 51st Annual Meeting of NMR Society of Japan, Nagoya, 09 Nov. 2012, Peer-reviewed

  
• Strctural analysisi of RNA aptamer in complex with prion protein, and its anti-prion activity

  Mashima, T; Nishikawa, F; Kamatari, O. Y; Fujiwara, H; Saimura, M; Nagata, T; Kodaki, T; Nishikawa, S; Kuwata, K; Katahira, M

  The 39th International Symposium on Nucleic Acids Chemistry.Nagoya,2012.11.15-17, Nov. 2012

  
• プリオンタンパク質とRNAアプタマーの相互作用及び木質バイオマスの生分解のモニタリング

  真嶋司; 西村裕志; 岡村英保; 西川富美子; 鎌足雄司; 永田崇; 西村諭; 桑田一夫; 渡辺隆司; 片平正人

  第51回NMR討論会.名古屋, Nov. 2012

  
• 抗HIV宿主因子 APOBEC3Gの位置依存的デアミネーション反応機構の解明

  Furukawa, A; Sugase, K; Morishita, R; Nagata, T; Ryo, A; Takaori, A; Katahira, M

  日本生物物理学会第50回年会.名古屋, Sep. 2012

  
• カリウムイオン依存的な四重鎖構造形成によって活性がオンになるインテリジェントリボザイムの創製

  Yamaoki, Y; Mashima, T; Sakurai, Y; Hara, Y; Nagata, T; Katahira, M

  日本生物物理学会第50回年会.名古屋, Sep. 2012

  
• Anti-prion activity and it strucural basis of RNAaptamer, and sliding-direction-dependent deaminase activity of anti-HIV enzyme

  T. Mashima; A. Furukawa; K. Sugase; H. Fujiwara; F. Nishikawa; R. Morishita; A. Ryo; Y. Kamatari; T. Nagata; S. Nishikawa; K. Kuwata; M. Katahira

  XXV international Conference on Magnetic Resonance in Biological Systems，2012.Lyon,2012.8.19-24., Aug. 2012

  
• NMR analysis of the interaction between AML1 Runt domain and RNA aptamer

  R. Amano; Y. Nomura; T. Nagata; J. Fukunaga; Y. Tanaka; M. Katahira; Y. Nakamura; T. Kozu; T. Sakamoto

  XXV international Conference on Magnetic Resonance in Biological Systems，2012.Lyon,2012.8.19-24., Aug. 2012

  
• Elucidation of the location-dependent deamination reaction mechanism of an anti-HIV factor,APOBEC3G

  A. Furukawa; K. Sugase; R. Morishita; A. Ryo; A. akaori; T. Nagata; M. Katahira

  XXV international Conference on Magnetic Resonance in Biological Systems，2012, Aug. 2012

  
• Anti-prion activity and its structural basis of RNA aptamer,and sliding-direction-dependent deaminase activity of anti-HIV enzyme

  Mashima.T,Furukawa.A; Sugase.K; Fugiwara.H; Nishikawa.F; Morishita.R,Ryo.A; Kamatari.Y; Nagata.T; Nishikawa.S; Kuwata.K; Katahira.M

  XXV international Conference on Magnetic Resonance in Biolgical Systems. Lyon, 18 Jul. 2012

  
• Sequence-specific RNA-recognition mechanism of Musashi1, neural and oncogenic RNA-binding Protein

  Ohyama, T; Nagata, T; Tsuda, K; Kobayashi, N; Imai, T; Okano, H; Yamazaki, T; Katahira, M

  XXV international Conference on Magnetic Resonance in Biolgical Systems. Lyon, 18 Jul. 2012

  
• カリウムイオン濃度を感知して活性がオンになるインテリジェントリボザイムの創製

  山置雄大; 真嶋司; 櫻井佑; 原ゆかり; 永田崇; 片平正人

  第14回日本RNA学会年会, 仙台, 2012.7.18-20, Jul. 2012

  
• RNAアプタマーの抗プリオン活性とその構造的基礎

  真嶋司; 西川富美子; 鎌足雄司; 藤原弘道; 永田崇; 小瀧努; 西川諭; 桑田一夫; 片平正人

  第14回日本RNA学会年会.仙台, Jul. 2012

  
• Sliding-direction-dependent activity of anti-HIV enzyme,and structural basis of anti-prion activity of RNA aptamer

  Furukawa, A; Mashima, T; Sugase, K; Fujiwara, H; Nagata, T; Morishita, R; Ryo, A; Nishikawa, F; Nishikawa, S; Kamatari, KO; Kuwata, K; Katahira, M

  Korea-Japan Bilateral NMR Symposium, 16 Mar. 2012

  
• 大型装置の連携利用による有用バイオマス生分解の実時間モニタリングとメカニズムの解明

  西村裕志; 西村裕志; 小澤佑; 永田崇; 小瀧努; 小瀧努; 渡辺隆司; 片平正人; 片平正人

  京都大学生存基盤科学研究ユニット研究成果報告書, Feb. 2012

  
• 3PT003 A study on deaminase activity of APOBEC3C by NMR(The 50th Annual Meeting of the Biophysical Society of Japan)

  Iwaoka Ryo; Kitamura Shingo; Kanba Keisuke; Furukawa Ayako; Okamura Hideyasu; Sugiura Wataru; Nagata Takashi; Iwatani Yasumasa; Katahira Masato

  Seibutsu Butsuri, 2012

  
• NMR法によるAPOBEC3Gデアミネース活性に関する研究

  Iwaoka; S. Kitamura; K. Kanba; A. Furukawa; H. Okamura; W. Sugiura; T. Nagata; Y. Iwatani; M. Katahira

  日本生物物理学会第50回年会，2012, 2012, Peer-reviewed

  
• Development of intelligent ribozyme whose activity switches on in response to K＋ｖia quadruplex formation

  Y. Yamaoki; T. Mashima; Y. Sakurai; Y. Hara; T. Nagata; M. Katahira

  The 39th International Symposium on Nucleic Acids Chemistry，2012, 2012, Peer-reviewed

  
• MR analysis of the interaction between AML1 Runt domain and RNA aptamer

  R. Amano; Y. Nomura; T. Nagata; J. Fukunaga; Y. Tanaka; M. Katahira; Y. Nakamura; T. Kozu; T. Sakamoto

  XXV international Conference on Magnetic Resonance in Biological Systems，2012, 2012, Peer-reviewed

  
• RNAアプタマーとAML1 Runt domainの相互作用解析

  天野亮; 野村祐介; 永田崇; 福永淳一; 田中陽一郎; 片平正人; 中村義一; 神津知子; 坂本泰一

  第14回日本RNA学会年会，仙台，2012.7.18-20, 2012

  
• Structural basis for the sequence-specific RNA-recognition mechanism of Musashi 1

  Ohyama, T; Nagata, T; Tsuda, K; Kobayashi, N; Imai, T; Okano, H; Yamazaki, T; Katahira, M

  第34回日本分子生物学会年会.横浜, Dec. 2011

  
• Real-time monitoring of the cytidine deamination along single-stranded DNA by an anti-HIV factor, APOBEC3G

  Furukawa, A; Sugase, K; Morishita, R; Nagata, T; Ryo, A; Takaori, A; Katahira, M

  The International Symposium on Nuclear Magnetic Resonance 2011, 15 Nov. 2011

  
• r(GGA)4 chimeric ribozyme switches its activity in responseto K+ via quadruplex formation

  Nagata, T; Sakurai, Y; Hara, Y; Mashima, T; Kodaki, T; Katahira, M

  The 38th International Symposium on Nucleic Acid Chemistry, 09 Nov. 2011

  
• Quantitative analysis of location- and sequence-dependent deamination by APOBEC3G using real-time NMR spectroscopy

  A. Furukawa; K. Sugase; R. Morishita; T. Nagata; T. Kodaki; A. Takaori-Kondo; A. Ryo; M. Katahira

  日本生物物理学会第49回年会，姫路，2011.9.16-18, Nov. 2011

  
• リアルタイムモニタリングによって示されたAPBEC3GによるDNA上の極性を有したスライディングとカップルしたシトシン脱アミノ基反応

  Katahira, M; Furukawa, A; Nagata, T; Takaku, H; Morishita, R; Takaori, A; Ryo, A

  第49回日本生物物理学会年会.姫路, Sep. 2011

  
• NMR study of XMRV protease in complex with an inhibitor

  Okamura, H; Matsunaga, T; Furukawa, A; Sato, Y; Iwaoka, R; Nagata, T; Kobayashi, N; Takaori, A; Morishita, R; Ryo, A; Katahira, M

  第49回日本生物物理学会年会.姫路, Sep. 2011

  
• MagRO-Assign: a tool for automated sequence specific assignment of chemical shifts for NMR signals of protein backbone

  Kobayashi, N; Furukawa, A; Kitazawa, R; Nagata, T; Kitahara, R; Katahira, M; Fujiwara, T

  EUROMAR2011. Frankfurt, 21 Aug. 2011

  
• XMRVプロテアーゼのNMRによる構造解析

  古川亜矢子; 松永智子; 岩岡諒; 永田崇; 小林直弘; 高折晃史; 森下了; 梁明秀; 片平正人

  第１１回日本蛋白質科学会年会.大阪, Jun. 2011

  
• 1SD-06 Coupling between cytidine-deamination by APOBEC3G and its sliding along DNA with polarity as revealed with real-time monitoring by NMR(1SD Dynamical aspects of proteins by NMR,The 49th Annual Meeting of the Biophysical Society of Japan)

  Katahira Masato; Furukawa Ayako; Nagata Takashi; Takaku Hiroshi; Morishita Ryo; Takaori Akifumi; Ryo Akihide

  Seibutsu Butsuri, 2011

  
• NMRによるXMRVプロテアーゼとその阻害剤との複合体の構造生物学的研究

  H. Okamura; T. Matsunaga; A. Furukawa; Y. Sato; R. Iwaoka; T. Nagata; N. Kobayashi; A. Takaori; R. Morishita; A. Ryo; M. Katahira

  日本生物物理学会第49回年会，姫路，2011.9.16-18, 2011, Peer-reviewed

  
• Musashi1蛋白質-標的RNA複合体に含まれる新たな核酸塩基認識機構

  大山 貴子; 永田 崇; 今井 貴雄; 岡野 栄之; 山崎俊夫; 片平 正人

  第49回NMR討論会、東京, Dec. 2010

  
• RNAアプタマー：プリオンタンパク質部分ペプチド複合体の構造及びA3Gタンパク質のDNA上スライディングの解析

  古川亜矢子; 真嶋司; 岩岡諒; 越田高史; 永田崇; 森下了; 梁明秀; 高折晃史; 西川富美子; 西川諭; 片平正人

  第49回NMR討論会、東京, Dec. 2010

  
• Structural and functional analysis of the translational repression complex that plays a key role in differentiation regulation

  Ohyama, T; Nagata, T; Tanaka, S; Iikura, H; Imai, T; Okano, H; Yamazaki, T; Katahira, M

  第33回日本分子生物学会年会、第83回日本生化学会大会合同大会.神戸, Dec. 2010

  
• 植物転写因子GT-1がリン酸化によりDNA結合能を上昇させる分子機構の解明

  藤本 なつき; 長崎 祐也; 能登 和明; 村田 純; 平塚 和之; 永田 崇; 片平 正人

  第33回日本分子生物学会年会、第83回日本生化学会大会合同大会.神戸, Dec. 2010

  
• RNAi関連因子TRBPの構造生物学的解析

  山下征輔; 永田崇; 川添将仁; 竹本千重; 赤坂領吾; 木川隆則; 滝元宏治; 武藤裕; 脇山素明; 横山茂之

  第33回日本分子生物学会年会、第83回日本生化学会大会合同大会.神戸, Dec. 2010

  
• A mechanism for an increase in DNA-binding affinity of the trihelix DNA-binding domain via its phosphorylation

  Nagata, T; Niyada, E; Fujimoto, N; Nagasaki, Y; Noto, K; Miyanoiri, Y; Murata, J; Hiratsuka, K; Katahira, M

  The 37th International Symposium on Nucleic Acids Chemistry, 10 Nov. 2010

  
• 抗ＨＩＶ因子ＡＰＯＢＥ３Ｇによる酵素反応のリアルタイムモニタリング

  古川亜矢子; 永田崇; 森下了; 梁明秀; 高折晃史; 片平正人

  平成22年度 日本分光学会年次講演会, Nov. 2010, Peer-reviewed

  
• マウスMusashi1による標的ＲＮＡの認識

  大山貴子; 永田崇; 今井貴雄; 岡野栄之; 山崎俊夫; 片平正人

  第49回ＮＭＲ討論会, Nov. 2010, Peer-reviewed

  
• 「ＮＭＲシグナルを用いた抗ウィルス因子活性のリアルタイムモニタリング

  古川亜矢子; 永田崇; 森下了; 高折晃史; 梁明秀; 片平正人

  第58回日本ウィルス学会学術集会.徳島, Nov. 2010

  
• APOBEC3Gが抗HIV活性を発揮する酵素反応のリアルタイムモニタリング

  古川 亜矢子; 永田 崇; 森下 了; 梁 昭秀; 高折 晃史; 片平 正人

  平成22年度日本分光学会.京都, Nov. 2010

  
• The real-time monitoring of the enzymatic reaction of an anti-HIV factor APOBEC3G

  Nagata, T; Mashima, T; Iwaoka, R; Sugiyama, R; Takaku, H; Takaori, A; Ryo, A; Katahira, M

  第48回生物物理学会年会.仙台,2010.9.20, Sep. 2010

  
• The real-time monitoringof the enzymatic reaction of an anti-HIV factor APOBEC3G

  Furukawa, A; Nagata,T; Morishita, R; Iwaoka, R; Katahira, M

  XXIV International Conference on Magnetic Resonance in Biological Systems, Cairns, 22 Aug. 2010

  
• Heat shock protein 70 inhibits HIV-1 Vif-mediated ubiquitination and degradation of Apobec3G

  Ryuichi Sugiyama; Hironori Nishitsuji; Yuichiro Habu; Haruki Naganuma; Hiroshi Koseki; Ayako Furukawa; Takashi Nagata; Masato Katahira; Hiroshi Takaku

  EUROPEAN JOURNAL OF MEDICAL RESEARCH, Aug. 2010

  
• Structures of telomere DNA in K+ solution, Musashi in complex with RNA, and wild and mutant (phosphorylation-mimicking) DNA-binding proteins, GT-1

  Ohyama, T; Tsuchibayashi, H; Matsugami, A; Miyanoiri, Y; Niyada, E; Nagata, T; Katahira, M

  XXII International Conference on Magnetic Resonance in Biological System.Cairns,2010.8.22-27, Aug. 2010

  
• Real-time monitoring of the enzymatic reaction of APOBEC3G possessing anti-HIV activity, and the structure of the RNA aptamer against prion protein

  Furukawa, A; Mashima, T; Matsugami, A; Nagata. T; Sugiyama, R; Takaku, H; Nishikawa, F; Nishikawa, S; Katahira, M

  International Symposium of Korean Society of Biochemistry and Molecular Biology -Structural Biology and Drug Discovery, Aug. 2010

  
• 分化制御の鍵をにぎる翻訳抑制複合体のNMR構造機能解析

  大山 貴子; 永田 崇; 田中 志穂; 飯倉 裕之; 河原 裕憲; 今井 貴雄; 岡野 栄之; 山崎俊夫; 片平 正人

  第１2回日本RNA学会年会、東京, Jul. 2010

  
• 植物転写因子GT-1のDNA結合活性がリン酸化により増強する分子機構

  永田 崇; 長崎 祐也; 藤本 なつき; 能登 和明; 二矢田 絵美; 宮ノ入 洋平; 村田 純; 平塚 和之; 片平 正人

  第１０回日本蛋白質科学会年会．北海道, Jun. 2010

  
• HIV遺伝子上でのAPOBEC3Gによるシチジンデアミネーション反応の動作機序

  古川亜矢子; 永田崇; 森下了; 杉山隆一; 高久洋; 高折晃史; 梁明秀; 片平正人

  第１０回日本蛋白質科学会年会．北海道, Jun. 2010

  
• 1P122 1D1255 The real-time monitoring of the enzymatic reaction of an anti-HIV factor APOBEC3G(Nucleic acid binding proteins,Oral Presentations,The 48th Annual Meeting of the Biophysical Society of Japan)

  Furukawa Ayako; Nagata Takashi; Morishita Ryo; Iwaoka Ryo; Sugiyama Ryuichi; Takaku Hiroshi; Takaori Akifumi; Ryo Akihide; Katahira Masato

  Seibutsu Butsuri, 2010

  
• 抗HIV活性を有する天然型APOBEC3Gタンパク質の構造、1本鎖DNAとの相互作用及び酵素反応のリアルタイムモニタリング

  古川 亜矢子; 永田 崇; 杉山 隆一; 高久 洋; 片平 正人

  第32回分子生物学会年会.横浜, Dec. 2009

  
• 抗HIV活性を保持するタンパク質APOBEC3Gの酵素反応のリアルタイムモニタリング

  古川 亜矢子; 中居 佑介; 永田 崇; 杉山 隆一; 高久 洋; 片平 正人

  第32回分子生物学会年会.横浜, Dec. 2009

  
• 翻訳制御に関わるMusashi1とPABP1の相互作用と立体構造の解析

  飯倉 裕之; 田中 志穂; 樋口 敬介; 河原 裕憲; 今井 貴雄; 岡野 栄之; 永田 崇; 片平 正人

  第32回分子生物学会年会.横浜, Dec. 2009

  
• 植物遺伝子の光制御に関連したGT-1タンパク質の構造と相互作用の研究

  藤本 なつき; 長崎 裕也; 能登 和明; 二矢田 絵美; 村田 純; 平塚 和之; 永田 崇; 片平 正人

  第32回分子生物学会年会.横浜, Dec. 2009

  
• 酵素反応のリアルタイムモニタリングとアプタマーによるプリオンタンパク質の捕捉機構

  古川亜矢子; 真嶋司; 永田崇; 杉山隆一; 高久洋; 西川富美子; 西川諭; 片平正人

  第４８回NMR討論会.九州大学, Nov. 2009

  
• Structure, interaction and real-time monitoring of the enzymatic reaction of APOBEC3G which possesses anti-HIV activity

  Furukawa, A; Nagata, T; Sugiyama, R; Takaku, H; Katahira, M

  The 3rd Asia-Pacific NMR Symposium.Korea,2009.10.25-28, Oct. 2009

  
• Musashi1,PABP,mRNAが構成する翻訳抑制複合体のNMR構造機能解析

  永田崇; 大山貴子; 杉山孝司; 飯倉裕之; 樋口敬介; 河原裕憲; 今井貴雄; 岡野栄之; 山崎俊夫; 片平正人

  日本RNA学会年会、2009.新潟, Jul. 2009

  
• Anti-HIV-1 Activity of A3G is Enhanced by HSP70

  Ryuichi Sugiyama; Yuichiro Habu; Haruki Naganuma; Hiroshi Koseki; Ayako Furukawa; Takashi Nagata; Masato Katahira; Hiroshi Takaku

  ANTIVIRAL RESEARCH, May 2009

  
• Molecular Mechanism for the reinforcement of DNA-binding activity of GT-1 via phosphorylation

  永田 崇; 長崎 祐也; 藤本 なつき; 能登 和明; 二矢田 絵美; 宮ノ入 洋平; 村田 純; 平塚 和之; 片平 正人

  第9回日本蛋白質科学会年会.熊本, May 2009

  
• HIVの複製を阻害するタンパク質APOBEC3Gの構造、相互作用及び酵素反応のリアルタイムモニタリング

  古川 亜矢子; 永田 崇; 羽生 勇一郎; 杉山 隆一; 林 文晶; 横山 茂之; 高久 洋; 片平 正人

  第9回日本蛋白質科学会年会.熊本, May 2009

  
• 熱により不可逆的に解離するPH0470由のSPFHドメイン多量体

  桑原陽太; 雲財悟; 永田崇; 池上貴久; 廣明洋子; 藤吉好則; 廣明秀一

  第9回日本蛋白質科学会年会.熊本, May 2009

  
• A simultaneous RNA-binding mode of two RNA-binding domains of Musashi-1 analyzed by paramagnetic effects, PRE, PCS, and RDC

  Takashi Nagata; Takako Ohyama; Ayako Furukawa; Takashi Sugiyama; Tsukasa Mashima; Takao Imai; Hideyuki Okano; Toshio Yamazaki; Masato Katahira

  第46回日本生物物理学会.福岡, Dec. 2008

  
• PARNのRRMドメインによるmRNA 5'キャップの認識機構

  永田 崇; 鈴木 咲良; 遠藤 竜太; 白水 美香子; 寺田 貴帆; 井上 真; 木川 隆則; eterGuntert; 小林 直宏; 田仲 昭子; 林崎 良英; 武藤 裕

  第31回日本分子生物学会年会・第82回日本生化学会大会.神戸, Dec. 2008

  
• HIVの複製を阻害するタンパク質APOBEC3Gの構造と相互作用の解析

  古川 亜矢子; 永田 崇; 羽生 勇一郎; 杉山 隆一; 林 文晶; 横山 茂之; 高久 洋; 片平 正人

  第31回日本分子生物学会年会・第82回日本生化学会大会.神戸, Dec. 2008

  
• Musashiタンパク質とPABPの相互作用の解析

  樋口 敬介; 永田 崇; 河原 裕憲; 今井 貴雄; 岡野 栄之; 片平 正人

  第31回日本分子生物学会年会・第81回日本生化学会大会.神戸, Dec. 2008

  
• テロメレースのリクルート及び活性の増強をもたらすUP1-テロメアDNA-テロメアRNAの三者複合体の相互作用の解明

  藤本 なつき; 永田 崇; 高田 祐輔; 前田 忠計; 福田 博政; 中釜 斉; 片平 正人

  第31回日本分子生物学会年会・第81回日本生化学会大会.神戸, Dec. 2008

  
• RDC、PRE及びPCSに基づいたMusashi-RNA複合体とプリオンタンパク質に対するRNAアプタマーの構造とダイナミクス

  大山貴子; 松上明正; 古川亜矢子; 真嶋司; 杉山孝司; 今井貴雄; 岡野栄之; 西川富美子; 西川諭; 山崎俊夫; 永田崇; 片平正人

  第４７回NMR討論会.筑波大学, Nov. 2008

  
• Hsp70のHIV-1感染抑制

  杉山 隆一; 羽生 勇一郎; 長沼 晴樹; 小関 寛; 永田 崇; 古川 亜矢子; 片平 正人; 高久 洋

  第５６回ウィルス学会.岡山, Oct. 2008

  
• Structural Studies of the RRM:mRNA 5' cap comple

  Nagata, T; Suzuki, S; Endo, R; Shirouzu, M; Terada, T; Inoue, M; Kigawa, T; Guntert, P; Hayashizaki, Y; Muto, Y; Yokoyama, S

  23rd International Conference of Magnetic Resonance in Biological Systems. San Diego, 24 Aug. 2008

  
• Structures and interactions of 4’-thioDNA and RNA/DNA-binding proteins

  Ohyama, T; Matsugami, A; Furukawa, A; Mashima, T; Sugiyama, T; Yamazaki, T; Nagata, T; Katahira, M

  23rd International Conference of Magnetic Resonance in Biological Systems. San Diego, 24 Aug. 2008

  
• Structural analysis of Musashi-RNA complex with paramagnetic effects

  Ohyama, T; Nagata, T; Furukawa, A; Sugiyama, T; Mashima, T; Yamazaki, T; Katahira, M

  XXIII International Conference on Magnetic Resonance in Biological Systems.San Diego,2008.8.24-29, Aug. 2008

  
• Molecular Basis for the reinforcement of the affinity of GT-1 to DNA through phosphorylation

  Takashi Nagata; Kazuaki Noto; Emi Niyada; Youhei Miyanoiri; Jun Murata; Kazuyuki Hiratsuka; Masato Katahira

  第30回日本分子生物学会年会・第80回日本生化学会大会.横浜, Jul. 2008

  
• 構造を基盤とした転写修飾にかかわる因子の分子間相互作用解析

  武藤裕; 桑迫香奈子; 何発虎; 鈴木咲良; 津田健吾; 高橋真梨; 永田崇; 党偉栄; 遠藤竜太; 染谷龍彦; 安部千景; 菅野純夫; 林崎良英; 横山茂之

  第30回日本分子生物学会年会・第80回日本生化学会大会.横浜, Jul. 2008

  
• hnRNP A1タンパク質のアンフォールド効果及びリクルート効果とテロメア長維持との関連

  永田崇; 高田祐輔; 大柄晶太; 小野朝美; 小野愛美; 福田博政; 中釜斉; 石川冬木; 片平正人

  第30回日本分子生物学会年会・第80回日本生化学会大会.横浜, Jul. 2008

  
• HIV感染の防御に関与するAPOBEC3Gの構造機能解析

  古川亜矢子; 水内祐基; 河合文隆; 羽生勇一郎; 杉山隆一; 高久洋; 永田崇; 片平正人

  第30回日本分子生物学会年会・第80回日本生化学会大会.横浜, Jul. 2008

  
• ロングレンジの構造情報を利用したMusashiタンパク質と標的RNAとの複合体の構造解析

  大山貴子; 大柄晶太; 宮ノ入洋平; 古川亜矢子; 今井貴雄; 岡野栄之; 永田崇; 片平正人

  第30回日本分子生物学会年会・第80回日本生化学会大会.横浜, Jul. 2008

  
• NMRによる超高熱菌Pyrococcus horikoshii由来膜タンパク質PH0470 SPFHドメインの構造機能解析

  桑原陽太; 雲財悟; 永田崇; 横山英志; 松井郁夫; 廣明秀一

  第30回日本分子生物学会年会・第80回日本生化学会大会.横浜, Jul. 2008

  
• ロングレンジの距離情報の抽出に基づいたマルチドメインタンパク質Musashiと標的RNAの複合体の構造解析

  大山貴子; 永田崇; 古川亜矢子; 杉山孝司; 真嶋司; 今井貴雄; 岡野栄之; 山崎俊夫; 片平正人

  RNA meeting 2008.札幌, Jul. 2008

  
• Mechanisms underlying biological activities of RNA/DNA-binding proteins, examined on the basis of the combination of structure and relaxation analyses

  Takako Ohyama; Ayako Furukawa; Tatsuya Miyoshi; Yusuke Takada; Shota Ogara; Kazuyuki Hiratsuka; Takao Imai; Hideyuki Okano; Hitoshi Nakagama; Takashi Nagata; Masato Katahira

  第46回NMR討論会.北海道, Sep. 2007

  
• RNP型RNA/DNA結合ドメインを有するタンパク質、hnRNP A1/DおよびMusashi-1に関するNMRを用いた構造研究

  大山 貴子; 永田 崇; 高田 祐輔; 大柄 晶太; 宮ノ入 洋平; 今井 貴雄; 岡野 栄之; 石川 冬木; 中釜 斉; 片平 正人

  第9回日本RNA学会年会.名古屋, Jul. 2007

  
• “The structure of human telomeric DNA and the interactions of hnRNP A1/hnRNP D proteins with telomeric DNA

  Matsugami, A; Ohyama, T; Ono, A; Ono, M; Nagata, T; Katahira, M

  International Workshop on Perspectives on Stable Isotope Aided NMR Methods for Protein Structural Analysis, Osaka, 30 Mar. 2007

  
• Structural studies on transcriptional and post-transcriptional gene regulation by NMR

  Takashi Nagata; Takako Ohyama; Kazuaki Noto; Emi Niyada; Youhei Miyanoiri; Takao Imai; Hideyuki Okano; Jun Murata; Kazuyuki Hiratsuka; Masato Katahira

  International Workshop on Perspectives on Stable Isotope Aided NMR Methods for Protein Structural Analysis, Osaka, 30 Mar. 2007

  
• Molecular basis of microtubule disassembly mechanism regulated by katanin p60

  Naoko Iwaya; Kouhei Akiyama; Satoru Unzai; Kentaro Tomii; Natsuko Goda; Takashi Nagata; Hidehito Tochio; Masahiro Shirakawa; Hidekazu Hiroaki

  International Workshop on Perspectives on Stable Isotope Aided NMR Methods for Protein Structural Analysis, Osaka, 30 Mar. 2007

  
• Structural studies on the neural RNA-binding protein Musashi1 in complex with its cognate RNA by NMR.

  Ohyama, T; Nagata, T; Miyanoiri, Y; Imai, T; Okano, H; Katahira, M

  RNA2006Izu, 03 Dec. 2006

  
• 植物遺伝子の光応答に関連したGT-1タンパク質のリン酸化による機能制御の構造基盤

  能登和明; 二矢田絵美; 永田崇; 宮ノ入洋平; 上杉晴一; 村田純; 平塚和之; 片平正人

  分子生物学会2006フォーラム, Dec. 2006

  
• hnRNP A1タンパク質のテロメラーゼリクルート効果の構造学的研究

  小野朝美; 大西秀典; 大柄晶太; 永田崇; 上杉晴一; 中釜斉; 福田博政; 片平正人

  分子生物学会2006フォーラム, Dec. 2006

  
• ラフト中のコレステロール結合タンパク質Perfringolysin Oの構造解析

  中谷圭一郎; 河合文隆; 永田崇; 上杉晴一; 嶋田由紀子; 岩下淑子; 石井毅; 若松馨; 片平正人

  分子生物学会2006フォーラム, Dec. 2006

  
• Structural Biology of Functional RNA and DNA

  MATSUGAMI Akimasa; KOIZUMI Daisuke; OHYAMA Takako; INADA Masashi; TSUCHIBAYASHI Hiroaki; NAGATA Takashi; XU Yan; NOGUCHI Yuuki; SUGIYAMA Hiroshi; UMEHARA Takuya; NISHIKAWA Fumiko; NISHIKAWA Satoshi; KATAHIRA Masato; KATAHIRA Masato; KATAHIRA Masato

  Abstr Annu Meet NMR Soc Jpn, Nov. 2006

  
• Structural analysis of Musashi protein complexed with the target RNA

  Ohyama,T; Miyanoiri,Y; Nagata,T; Okano,H; Katahira,M

  第45回NMR討論会.京都, Nov. 2006

  
• Musashiタンパク質と標的RNAの複合体の構造解析

  大山貴子; 宮ノ入洋平; 永田崇; 栃尾豪人; 岡野栄之; 片平正人

  第8回日本RNA学会年会.淡路島, Jul. 2006

  
• 翻訳を抑制するタンパク質及びRNAに関する構造解析

  松上明正; 小泉大輔; 菊池邦夫; 楳原琢也; 西川冨美子; 西川諭; 大山貴子; 宮ノ入洋平; 永田崇; 栃尾豪人; 岡野栄之; 片平正人

  第8回日本RNA学会年会.淡路島, Jul. 2006

  
• 転写因子GT-1タンパク質のリン酸化によるDNA結合能上昇の構造学的基盤-リン酸化をミミックする変異型と天然型の構造比較-

  二矢田絵美; 能登和明; 宮ノ入洋平; 栃尾豪人; 永田崇; 平塚和之; 片平正人

  第6回日本蛋白質科学会年会.京都, Apr. 2006

  
• Structures of telomere DNA in K+ solution, Musashi in complex with RNA, and wild and mutant (phosphorylation-mimicking) DNA-binding proteins, GT-1

  Ohyama, T; Tsuchibayashi, H; Matsugami, A; Miyanoiri, Y; Niyada, E; Nagata, T; Katahira, M

  XXII International Conference on Magnetic Resonance in Biological Systems, 2006, Peer-reviewed

  
• New approaches to structure determination of Protein/DNA complexes by stable isotope-assisted NMR techniques

  Nagata, T; Werner, M. H

  Cold Spring Harbor Laboratory Meeting on Mechanisms of Eukaryotic Transcription, New York, 2001, 2001

  
• Defining the functional motifs for DNA-binding and heterodimerization in AML1/RUNX1: Interactions with DNA, PEBP2b/CBFb and ETS1

  Nagata, T; Werner, M. H

  Cold Spring Harbor Laboratory Meeting on Mechanisms of Eukaryotic Transcription, 2001

  
• Defining functional motifs for DNA-binding and heterodimerization for the AML1/RUNX1 transcription factor

  Nagata, T; Werner, M. H

  Keystone Symposia on Frontiers of NMR in Molecular Biology VII, 2001

  
• Structure, backbone dynamics and interactions with RNA of RNA-binding domains of hnRNP D0 and Musashi1

  Nagata, T; Matsuda, G; Kanno, R; Kobayashi, H; Saeki, J; Kurihara, Y; Kohno, T; Yanagida, Y; Ishikawa, F; Imai, T; Sakakibara, S; Okano, H; Uesugi, S; Katahira, M

  XVIIIth International Conference on Magnetic Resonance in Biological Systems, 1998

  
• Structure of UUAGGG-specific RNA binding protein hnRNP-D and it’s interaction with RNA

  Nagata, T; Kurihara, Y; Kohno, T; Kajira, Y; Ishikawa, F; Katahira, M; Uesugi, S

  The 11th Rinshoken International conference, 1996

  

Presentations

• 免疫アルパカ由来大規模VHHデータセットで AI駆動型創薬に挑む

  Takashi Nagata

  令和7年度 大阪大学 先導的学際研究機構 創薬サイエンス部門シンポジウム AI×ビッグデータ×創薬 未来医療を切り拓く挑戦, 30 Jan. 2026, Invited

  
• A DATA-DRIVEN APPROACH TO ANTIGEN-ANTIBODY COMPLEX STRUCTURE MODELING USING LABELED VHH ANTIBODIES

  Takashi Nagata; Hiroyuki Yamazaki; Ryota Maeda; Hirofumi Tsuruta; Ryotaro Tamura; Akihiro Imura

  International Conference on Learning Representations (ICLR) 2025, Singapore EXPO, 27 Apr. 2025

  
• Harnessing Large-Scale VHH Datasets from Immunized Alpacas for AI-Powered Therapeutic Development

  Takashi Nagata; Hiroyuki Yamazaki; Ryota Maeda; Hirofumi Tsuruta; Ryotaro Tamura; Akihiro Imura

  The 25th Annual Meeting of the Protein Science Society of Japan, Trends in Structural Bioinformatics and Drug Discovery, 18 Jun. 2025, Invited

  
• NMR Analysis of Nucleic Acids in Molecular Crowding Environments

  Takashi Nagata; Tomoki Sakamoto; Makoto Shimizu; Aika Kawakami; Keiko Kondo; Yudai Yamaoki; Masato Katahira

  63rd Annual Meeting of the Nuclear Magnetic Resonance Society of Japan (2024), 31 Oct. 2024

  
• Development of the in-cell NMR methods to investigate the dynamics and structure of biomacromolecules at various time-scales

  Takashi Nagata

  京都大学エネルギー理工学研究所Ｒ5年度第4回センター談話会, 29 Nov. 2023, Invited

  
• バイオマス利用に向けた構造生命科学的あアプローチ：可能性と挑戦

  永田 崇

  京都大学宇治キャンパス公開2023エネルギー理工学研究所公開講演会, 22 Oct. 2023, Invited

  
• Structural Biology Approaches to Biomass Utilization: Opportunities and Challenges

  Takashi Nagata

  The 14th International Symposium of Advanced Energy Science, 31 Aug. 2023, Invited

  
• 構造生命科学で挑むエネルギー問題

  永田崇

  京都大学 第19回エネルギー理工学研究所公開講演会「宇治で発見？ 未来のエネルギー」, 10 May 2014, Invited

  
• タンパク質のNMRシグナルの帰属・構造解析の基礎 ~自動化の時代~

  永田 崇

  第22回若手NMR研究会 NMRによる多彩な生体試料へのアプローチ, 12 Sep. 2022, Invited

  
• Analysis of Structure and Dynamics of Oligonucleotides in Living Human Cells

  Takashi Nagata

  Joint conference of ISMAR-APNMR-NMRSJ-SEST 2021, 2021.8.23-27., 26 Aug. 2021

  
• NMR analysis of the protein containing intrinsically disordered region

  Takashi Nagata

  蛋白研セミナー 生体系NMR法の最前線 基礎から学ぶ最新 NMR解析法（第一回）ー構造解析の自動化, 06 Nov. 2020, Invited

  
• Structural and functional study of the G-quadruplex anti-prion RNA aptamer and in-cell NMR of nucleic acids

  Takashi NAGATA

  International IPR Seminar, Open up a new era of structural biology with advanced NMR study, Osaka Univ., 2019.11.19-20, 19 Nov. 2019, Invited

  
• Development of anti-prion RNA aptamers and destruction of the Alzheimer's disease-related complex

  Takashi NAGATA

  The 46th International Symposium on Nucleic Acids Chemistry, The 3rd Annual Meeting of Japan Society of Nucleic Acids Chemistry, Koganei Civic Center (Tokyo), 2019.10.29-31, 31 Oct. 2019

  
• 草木バイオマス有効利用と創薬開発に向けた構造生物学的アプローチ

  永田 崇

  第32回京都大学宇治キャンパス産学交流会. 京都大学(宇治) 2019.6.27, 27 Jun. 2019, Invited

  
• Evaluation of the structural stability and dynamics of nucleic acids inside the living cells by using in-cell NMR spectroscopy

  Nagata T; Yamaoki Y; Katahira M

  The 18th Annual Meeting of the Protein Society of Japan, 2018.6.26-28, Toki messe (Niigata), 28 Jun. 2018, Invited

  
• 機能性核酸の細胞内動的構造解析とDNA変換酵素のスライディングの活写

  永田 崇

  新学術領域「動的構造生命」 平成30年度 第4回 領域会議.ザ・ルイガンズ（福岡） 2018.6.12-14, 12 Jun. 2018, Invited

  
• DNA変換酵素のスライディングと核酸の細胞内動的構造のNMRによる研究

  永田 崇

  生物機能化学シンポジウム エネルギー理工学研究所主催エネルギー複合機構研究センター、国際・産学連携支援推進事業支援. 京都大学（宇治）2018.03.26, 26 Mar. 2018, Invited

  
• 木材分解酵素の構造機能相関研究～木質バイオマスの有効活用に向けた取り組み～

  永田 崇

  京都大学エネルギー理工学研究所第8回センター談話会、2018.01.05, 05 Jan. 2018

  
• 機能性核酸の細胞内動的構造解析とDNA変換酵素のスライディングの活写

  永田 崇

  新学術領域「動的構造生命」 平成29年度 第3回 領域会議.ザ・ルイガンズ（福岡） 2017.6.5-7, 05 Jun. 2017, Invited

  
• Structural study of RNA aptamer and peptide that potently perturb the function of intrinsically disordered proteins related to disease

  Takashi NAGATA

  The 5th International Symposium on Drug Discovery and Design by NMR, Riken Yokohama Campus, 2016.8.29-30, 29 Aug. 2016, Invited

  
• DNA変換酵素のスライディングと共役した酵素活性機構の動的構造基盤の解明

  永田 崇

  新学術領域 「動的構造生命」 平成28年度 第2回 領域会議.クロスウェーブ幕張（千葉） 2016.4.18-20, 18 Apr. 2016, Invited

  
• NMR study of RNA aptamer and peptide selected with mRNA display that inhibit the function of disease-related intrinsically disordered proteins

  Takashi NAGATA

  Takashi Nagata, 29 Jan. 2016, Invited

  
• DNA変換酵素のスライディングと共役した酵素活性機構の動的構造基盤の解明

  永田 崇

  新学術領域 「動的構造生命」 平成27年度 第1回 領域会議.ザ・ルイガンズ(福岡) 2015.6.1-3, 01 Jun. 2015, Invited

  
• Approaches to the protein structure, interaction, enzymatic activity by NMR

  Takashi NAGATA

  第56回日本生化学会 中国-四国支部例会.島根大学大学会館 (松江), 29 May 2015, Invited

  
• 脳の機能を妨害する天然変性蛋白質とそれを標的とするアプタマーの分子認識機構の解明

  永田 崇

  新学術領域「天然変性蛋白質」平成25年度 第4回 領域会議.ひだホテルプラザ（岐阜） 2013.9.3-5, 03 Sep. 2013, Invited

  
• 脳の機能を妨害する天然変性蛋白質とそれを標的とするアプタマーの分子認識機構の解明

  永田崇

  新学術領域「天然変性蛋白質」平成24年度 第3回 領域会議.北広島クラッセホテル（北海道）2012.5.30-6.1, 30 May 2012, Invited

  
• 酵素活性の実時間追跡と構造解析による抗HIV治療薬の開発型研究

  永田 崇

  第7回先端医科学研究センタープロジェクト報告会.横浜, Jan. 2012, Invited

  
• New approaches to structure determination of Protein/DNA complexes by stable isotope-assisted NMR techniques

  Nagata, T; Werner, M. H

  The Rockefeller University, "Tri-Lab" Scientific Exchange, 1999, Invited