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Yoshida, Kentaro

Graduate School of Agriculture, Division of Applied Biosciences Professor

Yoshida, Kentaro
list
    Last Updated :2025/04/23

    Basic Information

    Faculty

    • 農学部

    Academic Degree

    • 博士(農学)(京都大学)
    • 修士(農学)(京都大学)

    Language of Instruction

    • Japanese

    ID,URL

    researchmap URL

    list
      Last Updated :2025/04/23

      Research

      Research Topics, Overview of the research

      • Research Topics

        Intergenomic interactions in allopolyploid plants, Speciation, Environmental adaptation of plants, Plant-pathogen interaction
      • Overview of the research

        I am studying genes and genomic dynamics related to important agricultural traits, environmental adaptation, interspecific interactions, speciation, and evolution of allopolyploids. In particular, I focus on identification of genes involved in hybrid weakness, intergenomic interactions, and aneuploidy found in interspecific hybrids between wheat and its wild relatives and elucidation of their molecular mechanisms.

      Research Areas

      • Life sciences, Genetics
      • Environmental science/Agricultural science, Conservation science (plants)
      • Environmental science/Agricultural science, Plant genetics and breeding

      Papers

      • Identification of a hard kernel texture line of synthetic allohexaploid wheat reducing the puroindoline accumulation on the D genome from Aegilops tauschii
        Yuka Miki; Tatsuya M. Ikeda; Kentaro Yoshida; Shigeo Takumi
        Journal of Cereal Science, 01 May 2020
      • Using genomics tools to understand plant resistance against pathogens: A case study of Magnaporthe-rice interactions
        Ryohei Terauchi; Koki Fujisaki; Motoki Shimizu; Kaori Oikawa; Takumi Takeda; Hiroki Takagi; Akira Abe; Yudai Okuyama; Kentaro Yoshida; Hiromasa Saitoh
        Applied Plant Biotechnology for Improving Resistance to Biotic Stress, 01 Jan. 2019
      • Identification of the causal mutation in early heading mutant of bread wheat (Triticum aestivum L.) using MutMap approach.
        Shoya Komura; Kentaro Yoshida; Hironobu Jinno; Youko Oono; Hirokazu Handa; Shigeo Takumi; Fuminori Kobayashi
        Molecular breeding : new strategies in plant improvement, Jun. 2024
      • Zinc-finger (ZiF) fold secreted effectors form a functionally diverse family across lineages of the blast fungus Magnaporthe oryzae.
        Juan Carlos De la Concepcion; Thorsten Langner; Koki Fujisaki; Xia Yan; Vincent Were; Anson Ho Ching Lam; Indira Saado; Helen J Brabham; Joe Win; Kentaro Yoshida; Nicholas J Talbot; Ryohei Terauchi; Sophien Kamoun; Mark J Banfield
        PLoS pathogens, Jun. 2024
      • An NLR paralog Pit2 generated from tandem duplication of Pit1 fine-tunes Pit1 localization and function.
        Yuying Li; Qiong Wang; Huimin Jia; Kazuya Ishikawa; Ken-Ichi Kosami; Takahiro Ueba; Atsumi Tsujimoto; Miki Yamanaka; Yasuyuki Yabumoto; Daisuke Miki; Eriko Sasaki; Yoichiro Fukao; Masayuki Fujiwara; Takako Kaneko-Kawano; Li Tan; Chojiro Kojima; Rod A Wing; Alfino Sebastian; Hideki Nishimura; Fumi Fukada; Qingfeng Niu; Motoki Shimizu; Kentaro Yoshida; Ryohei Terauchi; Ko Shimamoto; Yoji Kawano
        Nature communications, 30 May 2024
      • Discrepancy of flowering time between genetically close sublineages of Aegilops umbellulata Zhuk.
        In Son; Nozomi Kasazumi; Moeko Okada; Shigeo Takumi; Kentaro Yoshida
        Scientific Reports, 28 Mar. 2024
      • Phenotypic effects of the U-genome variation in nascent synthetic hexaploids derived from interspecific crosses between durum wheat and its diploid relative Aegilops umbellulata
        Moeko Okada; Asami Michikawa; Kentaro Yoshida; Kiyotaka Nagaki; Tatsuya M. Ikeda; Shigeo Takumi
        PLoS ONE, Apr. 2020, Peer-reviewed
      • Use of TILLING for Reverse and Forward Genetics of Rice
        Sujay Rakshit; Hiroyuki Kanzaki; Hideo Matsumura; Arunita Rakshit; Takahiro Fujibe; Yudai Okuyama; Kentaro Yoshida; Muluneh Oli; Matt Shenton; Hiroe Utsushi; Chikako Mitsuoka; Akira Abe; Yutaka Kiuchi; Ryohei Terauchi
        The Handbook of Plant Mutation Screening: Mining of Natural and Induced Alleles, 30 Mar. 2010, Peer-reviewed
      • RNA-Seq-based DNA marker analysis of the genetics and molecular evolution of Triticeae species
        Kazuhiro Sato; Kentaro Yoshida; Shigeo Takumi
        Functional & Integrative Genomics, 18 Aug. 2021
      • Genome sequencing-based coverage analyses facilitate high-resolution detection of deletions linked to phenotypes of gamma-irradiated wheat mutants
        Shoya Komura; Hironobu Jinno; Tatsuya Sonoda; Youko Oono; Hirokazu Handa; Shigeo Takumi; Kentaro Yoshida; Fuminori Kobayashi
        BMC Genomics, Dec. 2022, Peer-reviewed, Corresponding author
      • Phenotypic effects of Am genomes in nascent synthetic hexaploids derived from interspecific crosses between durum and wild einkorn wheat
        Asami Michikawa; Moeko Okada; Tatsuya M. Ikeda; Kiyotaka Nagaki; Kentaro Yoshida; Shigeo Takumi
        PLOS ONE, 27 Apr. 2023, Corresponding author
      • GRAS-Di system facilitates high-density genetic map construction and QTL identification in recombinant inbred lines of the wheat progenitor Aegilops tauschii
        Yuka Miki; Kentaro Yoshida; Hiroyuki Enoki; Shoya Komura; Kazuyo Suzuki; Minoru Inamori; Ryo Nishijima; Shigeo Takumi
        Scientific Reports, Dec. 2020, Peer-reviewed, Corresponding author
      • Production and phenotypic characterization of nascent synthetic decaploids derived from interspecific crosses between a durum wheat cultivar and hexaploid Aegilops species
        Shigeo Takumi; Sayaka Tanaka; Kentaro Yoshida; Tatsuya M. Ikeda
        Genetic Resources and Crop Evolution, Apr. 2020, Peer-reviewed
      • Phenotypic effects of the U-genome variation in nascent synthetic hexaploids derived from interspecific crosses between durum wheat and its diploid relative Aegilops umbellulata
        Moeko Okada; Asami Michikawa; Kentaro Yoshida; Kiyotaka Nagaki; Tatsuya M. Ikeda; Shigeo Takumi
        PLoS ONE, Apr. 2020, Peer-reviewed
      • Diploid genome differentiation conferred by RNA sequencing-based survey of genome-wide polymorphisms throughout homoeologous loci in Triticum and Aegilops.
        Sayaka Tanaka; Kentaro Yoshida; Kazuhiro Sato; Shigeo Takumi
        BMC genomics, 20 Mar. 2020, Peer-reviewed, Corresponding author
      • Heterologous expression of wheat WRKY transcription factor genes transcriptionally activated in hybrid necrosis strains alters abiotic and biotic stress tolerance in transgenic Arabidopsis.
        Yasunobu Kuki; Ryoko Ohno; Kentaro Yoshida; Shigeo Takumi
        Plant physiology and biochemistry : PPB, 26 Feb. 2020, Peer-reviewed
      • Introgression of chromosomal segments conferring early heading date from wheat diploid progenitor, Aegilops tauschii Coss., into Japanese elite wheat cultivars.
        Shigeo Takumi; Seito Mitta; Shoya Komura; Tatsuya M Ikeda; Hitoshi Matsunaka; Kazuhiro Sato; Kentaro Yoshida; Koji Murai
        PloS one, 2020, Peer-reviewed
      • Genome-wide polymorphisms from RNA sequencing assembly of leaf transcripts facilitate phylogenetic analysis and molecular marker development in wild einkorn wheat.
        Asami Michikawa; Kentaro Yoshida; Moeko Okada; Kazuhiro Sato; Shigeo Takumi
        Molecular genetics and genomics : MGG, Oct. 2019, Peer-reviewed, Corresponding author
      • Origin of wheat B-genome chromosomes inferred from RNA sequencing analysis of leaf transcripts from section Sitopsis species of Aegilops.
        Yuka Miki; Kentaro Yoshida; Nobuyuki Mizuno; Shuhei Nasuda; Kazuhiro Sato; Shigeo Takumi
        DNA research : an international journal for rapid publication of reports on genes and genomes, 01 Apr. 2019, Peer-reviewed, Corresponding author
      • RNA Sequencing-Based Bulked Segregant Analysis Facilitates Efficient D-genome Marker Development for a Specific Chromosomal Region of Synthetic Hexaploid Wheat.
        Ryo Nishijima; Kentaro Yoshida; Kohei Sakaguchi; Shin-Ichi Yoshimura; Kazuhiro Sato; Shigeo Takumi
        International journal of molecular sciences, 26 Nov. 2018, Peer-reviewed, Corresponding author
      • RNA-seq analysis reveals considerable genetic diversity and provides genetic markers saturating all chromosomes in the diploid wild wheat relative Aegilops umbellulata.
        Moeko Okada; Kentaro Yoshida; Ryo Nishijima; Asami Michikawa; Yuka Motoi; Kazuhiro Sato; Shigeo Takumi
        BMC plant biology, 08 Nov. 2018, Peer-reviewed, Corresponding author
      • Publisher Correction: Core microbiomes for sustainable agroecosystems.
        Hirokazu Toju; Kabir G Peay; Masato Yamamichi; Kazuhiko Narisawa; Kei Hiruma; Ken Naito; Shinji Fukuda; Masayuki Ushio; Shinji Nakaoka; Yusuke Onoda; Kentaro Yoshida; Klaus Schlaeppi; Yang Bai; Ryo Sugiura; Yasunori Ichihashi; Kiwamu Minamisawa; E Toby Kiers
        Nature plants, Sep. 2018
      • Effect of the U genome on grain hardness in nascent synthetic hexaploids derived from interspecific hybrids between durum wheat and Aegilops umbellulata
        Moeko Okada; Tatsuya Ikeda; Kentaro Yoshida; TAKUMI SHIGEO
        Journal of Cereal Science, Sep. 2018, Peer-reviewed
      • The ash dieback invasion of Europe was founded by two genetically divergent individuals
        Mark McMullan; Maryam Rafiqi; Gemy Kaithakottil; Bernardo J. Clavijo; Lorelei Bilham; Elizabeth Orton; Lawrence Percival-Alwyn; Ben J. Ward; Anne Edwards; Diane G.O. Saunders; Gonzalo Garcia Accinelli; Jonathan Wright; Walter Verweij; Georgios Koutsovoulos; Kentaro Yoshida; Tsuyoshi Hosoya; Louisa Williamson; Philip Jennings; Renaud Ioos; Claude Husson; Ari M. Hietala; Adam Vivian-Smith; Halvor Solheim; Dan Maclean; Christine Fosker; Neil Hall; James K.M. Brown; David Swarbreck; Mark Blaxter; J. Allan Downie; Matthew D. Clark
        Nature Ecology and Evolution, 01 Jun. 2018, Peer-reviewed
      • Genetic mapping of a novel recessive allele for non-glaucousness in wild diploid wheat Aegilops tauschii: implications for the evolution of common wheat
        Ryo Nishijima; Chisa Tanaka; Kentaro Yoshida; Shigeo Takumi
        Genetica, 01 Apr. 2018, Peer-reviewed
      • Gene expression polymorphism underpins evasion of host immunity in an asexual lineage of the Irish potato famine pathogen
        Marina Pais; Kentaro Yoshida; Artemis Giannakopoulou; Mathieu A. Pel; Liliana M. Cano; Ricardo F. Oliva; Kamil Witek; Hannele Lindqvist-Kreuze, Vivianne; G. A. A. Vleeshouwers; Sophien Kamoun
        BMC Evolutionary Biology, 2018, Peer-reviewed, Lead author
      • Hybrid incompatibilities in interspecific crosses between tetraploid wheat and its wild diploid relative Aegilops umbellulata
        Moeko Okada; Kentaro Yoshida; Shigeo Takumi
        PLANT MOLECULAR BIOLOGY, Dec. 2017, Peer-reviewed
      • Genome sequencing of the staple food crop white Guinea yam enables the development of a molecular marker for sex determination
        Muluneh Tamiru; Satoshi Natsume; Hiroki Takagi; Benjamen White; Hiroki Yaegashi; Motoki Shimizu; Kentaro Yoshida; Aiko Uemura; Kaori Oikawa; Akira Abe; Naoya Urasaki; Hideo Matsumura; Pachakkil Babil; Shinsuke Yamanaka; Ryo Matsumoto; Satoru Muranaka; Gezahegn Girma; Antonio Lopez-Montes; Melaku Gedil; Ranjana Bhattacharjee; Michael Abberton; P. Lava Kumar; Ismail Rabbi; Mai Tsujimura; Toru Terachi; Wilfried Haerty; Manuel Corpas; Sophien Kamoun; Gunter Kahl; Hiroko Takagi; Robert Asiedu; Ryohei Terauchi
        BMC BIOLOGY, Sep. 2017, Peer-reviewed
      • Comparative secretome analysis of Rhizoctonia solani isolates with different host ranges reveals unique secretomes and cell death inducing effectors
        Jonathan P. Anderson; Jana Sperschneider; Joe Win; Brendan Kidd; Kentaro Yoshida; James Hane; Diane G. O. Saunders; Karam B. Singh
        SCIENTIFIC REPORTS, Sep. 2017, Peer-reviewed
      • Evolution of the wheat blast fungus through functional losses in a host specificity determinant
        Yoshihiro Inoue; Trinh T. P. Vy; Kentaro Yoshida; Hokuto Asano; Chikako Mitsuoka; Soichiro Asuke; Vu L. Anh; Christian J. R. Cumagun; Izumi Chuma; Ryohei Terauchi; Kenji Kato; Thomas Mitchell; Barbara Valent; Mark Farman; Yukio Tosa
        SCIENCE, Jul. 2017, Peer-reviewed
      • Lentinula edodes Genome Survey and Postharvest Transcriptome Analysis
        Yuichi Sakamoto; Keiko Nakade; Shiho Sato; Kentaro Yoshida; Kazuhiro Miyazaki; Satoshi Natsume; Naotake Konno
        APPLIED AND ENVIRONMENTAL MICROBIOLOGY, May 2017, Peer-reviewed
      • Global gene expression profiling related to temperature-sensitive growth abnormalities in interspecific crosses between tetraploid wheat and Aegilops tauschii
        Ryusuke Matsuda; Julio Cesar Masaru Iehisa; Kouhei Sakaguchi; Ryoko Ohno; Kentaro Yoshida; Shigeo Takumi
        PLOS ONE, May 2017, Peer-reviewed
      • Gene expression polymorphism underpins evasion of host immunity in an asexual lineage of the Irish potato famine pathogen
        Marina Pais; Kentaro Yoshida; Artemis Giannakopoulou; Mathieu A. Pel; Liliana M. Cano; Ricardo F. Oliva; Kamil Witek; Hannele Lindqvist-Kreuze, Vivianne; G.A.A. Vleeshouwers; Sophien Kamoun
        bioRxiv, Mar. 2017
      • HT-SuperSAGE of the Gut Tissue of a VIP3A-Resistant Heliothis virescens F. (Lepidoptera: Noctuidae) Strain Provides Insights Into its Evolution and Toxin Adaptation
        Camilo Ayra-Pardo; Ben Raymond; Asim Gulzar; Lianet Rodriguez-Cabrera; Claudia Rodriguez de la Noval; Ivis Moran Bertot; Maria Elena Ochogavia; Ryohei Terauchi; Kentaro Yoshida; Hideo Matsumura; Pilar Tellez Rodriguez; Orlando Borras Hidalgo; Denis J Wright
        Insect Science, 2017, Peer-reviewed
      • Arabidopsis late blight: infection of a nonhost plant by Albugo laibachii enables full colonization by Phytophthora infestans
        Khaoula Belhaj; Liliana M. Cano; David C. Prince; Ariane Kemen; Kentaro Yoshida; Yasin F. Dagdas; Graham J. Etherington; Henk-jan Schoonbeek; H. Peter van Esse; Jonathan D. G. Jones; Sophien Kamoun; Sebastian Schornack
        CELLULAR MICROBIOLOGY, Jan. 2017, Peer-reviewed
      • Estimation of novel colony establishment and persistence of the ectomycorrhizal basidiomycete Tricholoma matsutake in a Pinus densiflora forest
        Maki Narimatsu; Toshiyuki Koiwa; Yuichi Sakamoto; Satoshi Natsume; Hiroyuki Kurokochi; Chunlan Lian; Yuichi Nakajima; Keiko Nakade; Kentaro Yoshida; Keitaro Tawaraya
        FUNGAL ECOLOGY, Dec. 2016, Peer-reviewed
      • Genome-wide identification of novel genetic markers from RNA sequencing assembly of diverse Aegilops tauschii accessions.
        Ryo Nishijima; Kentaro Yoshida; Yuka Motoi; Kazuhiro Sato; Shigeo Takumi
        Molecular genetics and genomics : MGG, Aug. 2016, Peer-reviewed, Corresponding author
      • Recent advances in wheat genomics using next generation sequencing
        TAKUMI SHIGEO; YOSHIDA KENTARO; MIZUNO NOBUYUKI; KOBAYASHI FUMINORI; NAGANO ATSUSHI; HANDA HIROKAZU
        育種学研究, Jun. 2016, Peer-reviewed, Invited
      • Host specialization of the blast fungus Magnaporthe oryzae is associated with dynamic gain and loss of genes linked to transposable elements
        Kentaro Yoshida; Diane G. O. Saunders; Chikako Mitsuoka; Satoshi Natsume; Shunichi Kosugi; Hiromasa Saitoh; Yoshihiro Inoue; Izumi Chuma; Yukio Tosa; Liliana M. Cano; Sophien Kamoun; Ryohei Terauchi
        BMC GENOMICS, May 2016, Peer-reviewed, Lead author, Corresponding author
      • Rice breeding based on whole genome sequencing using next-generation sequencer
        Akira Abe; Hiroki Takagi; Satoshi Natsume; Hiroki Yaegashi; Hideko Kikuchi; Kentaro Yoshida; Shunichi Kosugi; Hiromasa Saitoh; Naoya Urasaki; Hideo Matsumura; Hiroyuki Kanzaki; Ryohei Terauchi
        Seikagaku, 2016, Peer-reviewed
      • Rice Exo70 interacts with a fungal effector, AVR-Pii, and is required for AVR-Pii-triggered immunity
        Koki Fujisaki; Yoshiko Abe; Akiko Ito; Hiromasa Saitoh; Kentaro Yoshida; Hiroyuki Kanzaki; Eiko Kanzaki; Hiroe Utsushi; Tetsuro Yamashita; Sophien Kamoun; Ryohei Terauchi
        PLANT JOURNAL, Sep. 2015, Peer-reviewed
      • Phytophthora infestans RXLR-WY Effector AVR3a Associates with Dynamin-Related Protein 2 Required for Endocytosis of the Plant Pattern Recognition Receptor FLS2
        Angela Chaparro-Garcia; Simon Schwizer; Jan Sklenar; Kentaro Yoshida; Benjamin Petre; Jorunn I. B. Bos; Sebastian Schornack; Alexandra M. E. Jones; Tolga O. Bozkurt; Sophien Kamoun
        PLOS ONE, Sep. 2015, Peer-reviewed
      • Grouping of multicopper oxidases in Lentinula edodes by sequence similarities and expression patterns
        Yuichi Sakamoto; Keiko Nakade; Kentaro Yoshida; Satoshi Natsume; Kazuhiro Miyazaki; Shiho Sato; Arend F. van Peer; Naotake Konno
        AMB EXPRESS, Sep. 2015, Peer-reviewed
      • Lessons from Fraxinus, a crowd-sourced citizen science game in genomics
        Ghanasyam Rallapalli; Fraxinus Players; Diane Go Saunders; Kentaro Yoshida; Anne Edwards; Carlos A. Lugo; Steve Collin; Bernardo Clavijo; Manuel Corpas; David Swarbreck; Matthew Clark; J. Allan Downie; Sophien Kamoun; Team Cooper; Dan MacLean
        ELIFE, Jul. 2015, Peer-reviewed
      • MutMap accelerates breeding of a salt-tolerant rice cultivar
        Hiroki Takagi; Muluneh Tamiru; Akira Abe; Kentaro Yoshida; Aiko Uemura; Hiroki Yaegashi; Tsutomu Obara; Kaori Oikawa; Hiroe Utsushi; Eiko Kanzaki; Chikako Mitsuoka; Satoshi Natsume; Shunichi Kosugi; Hiroyuki Kanzaki; Hideo Matsumura; Naoya Urasaki; Sophien Kamoun; Ryohei Terauchi
        NATURE BIOTECHNOLOGY, May 2015, Peer-reviewed
      • The Draft Genome of Hop (Humulus lupulus), an Essence for Brewing
        Satoshi Natsume; Hiroki Takagi; Akira Shiraishi; Jun Murata; Hiromi Toyonaga; Josef Patzak; Motoshige Takagi; Hiroki Yaegashi; Aiko Uemura; Chikako Mitsuoka; Kentaro Yoshida; Karel Krofta; Honoo Satake; Ryohei Terauchi; Eiichiro Ono
        PLANT AND CELL PHYSIOLOGY, Mar. 2015, Peer-reviewed
      • Accelerated Senescence and Enhanced Disease Resistance in Hybrid Chlorosis Lines Derived from Interspecific Crosses between Tetraploid Wheat and Aegilops tauschii
        Hiroki Nakano; Nobuyuki Mizuno; Yukio Tosa; Kentaro Yoshida; Pyoyun Park; Shigeo Takumi
        PLOS ONE, Mar. 2015, Peer-reviewed
      • Field pathogenomics reveals the emergence of a diverse wheat yellow rust population
        Amelia Hubbard; Clare M. Lewis; Kentaro Yoshida; Ricardo H. Ramirez-Gonzalez; Claude de Vallavieille-Pope; Jane Thomas; Sophien Kamoun; Rosemary Bayles; Cristobal Uauy; Diane G. O. Saunders
        GENOME BIOLOGY, Feb. 2015, Peer-reviewed
      • Whole genome sequencing to identify genes and QTL in rice
        Ryohei Terauchi; Akira Abe; Hiroki Takagi; Muluneh Tamiru; Rym Fekih; Satoshi Natsume; Hiroki. Yaegashi; Shunichi Kosugi; Hiroyuki Kanzaki; Hideo Matsumura; Hiromasa Saitoh; Kentaro Yoshida; Liliana Cano; Sophien Kamoun
        Advances in the Understanding of Biological Sciences Using Next Generation Sequencing (NGS) Approaches, 01 Jan. 2015, Peer-reviewed
      • Mining Herbaria for Plant Pathogen Genomes: Back to the Future
        Kentaro Yoshida; Hernan A. Burbano; Johannes Krause; Marco Thines; Detlef Weigel; Sophien Kamoun
        PLOS PATHOGENS, Apr. 2014, Peer-reviewed
      • The rice (Oryza sativa L.) LESION MIMIC RESEMBLING, which encodes an AAA-type ATPase, is implicated in defense response.
        Rym Fekih; Muluneh Tamiru; Hiroyuki Kanzaki; Akira Abe; Kentaro Yoshida; Eiko Kanzaki; Hiromasa Saitoh; Hiroki Takagi; Satoshi Natsume; Jerwin R Undan; Jesusa Undan; Ryohei Terauchi
        Molecular genetics and genomics, 2014, Peer-reviewed
      • Protoplast Cell Death Assay to Study Magnaporthe oryzae AVR Gene Function in Rice.
        Hiroyuki Kanzaki; Kentaro Yoshida; Hiromasa Saitoh; Muluneh Tamiru; Ryohei Terauchi
        Methods in molecular biology, 2014, Peer-reviewed
      • Genome sequence comparison reveals a candidate gene involved in male– hermaphrodite differentiation in papaya (Carica papaya) trees
        Hiroki Ueno; Naoya Urasaki; Satoshi Natsume; Kentaro Yoshida; Kazuhiko Tarora; Ayano Shudo; Ryohei Terauchi; Hideo Matsumura
        Molecular genetics and genomics, 2014, Peer-reviewed
      • Effector Specialization in a Lineage of the Irish Potato Famine Pathogen
        Suomeng Dong; Remco Stam; Liliana M. Cano; Jing Song; Jan Sklenar; Kentaro Yoshida; Tolga O. Bozkurt; Ricardo Oliva; Zhenyu Liu; Miaoying Tian; Joe Win; Mark J. Banfield; Alexandra M. E. Jones; Renier A. L. van der Hoorn; Sophien Kamoun
        SCIENCE, Jan. 2014, Peer-reviewed
      • QTL Map Meets Population Genomics: An Application to Rice
        Jeffrey A. Fawcett; Tomoyuki Kado; Eriko Sasaki; Shohei Takuno; Kentaro Yoshida; Ryuichi P. Sugino; Shunichi Kosugi; Satoshi Natsume; Chikako Mitsuoka; Aiko Uemura; Hiroki Takagi; Akira Abe; Takashige Ishii; Ryohei Terauchi; Hideki Innan
        PLOS ONE, Dec. 2013, Peer-reviewed
      • MutMap-Gap: whole-genome resequencing of mutant F2 progeny bulk combined with de novo assembly of gap regions identifies the rice blast resistance gene Pii
        Hiroki Takagi; Aiko Uemura; Hiroki Yaegashi; Muluneh Tamiru; Akira Abe; Chikako Mitsuoka; Hiroe Utsushi; Satoshi Natsume; Hiroyuki Kanzaki; Hideo Matsumura; Hiromasa Saitoh; Kentaro Yoshida; Liliana M. Cano; Sophien Kamoun; Ryohei Terauchi
        NEW PHYTOLOGIST, Oct. 2013, Peer-reviewed
      • Coval: Improving Alignment Quality and Variant Calling Accuracy for Next-Generation Sequencing Data
        Shunichi Kosugi; Satoshi Natsume; Kentaro Yoshida; Daniel MacLean; Liliana Cano; Sophien Kamoun; Ryohei Terauchi
        PLOS ONE, Oct. 2013, Peer-reviewed
      • MutMap+: Genetic Mapping and Mutant Identification without Crossing in Rice
        Rym Fekih; Hiroki Takagi; Muluneh Tamiru; Akira Abe; Satoshi Natsume; Hiroki Yaegashi; Shailendra Sharma; Shiveta Sharma; Hiroyuki Kanzaki; Hideo Matsumura; Hiromasa Saitoh; Chikako Mitsuoka; Hiroe Utsushi; Aiko Uemura; Eiko Kanzaki; Shunichi Kosugi; Kentaro Yoshida; Liliana Cano; Sophien Kamoun; Ryohei Terauchi
        PLoS ONE, 10 Jul. 2013, Peer-reviewed
      • The rise and fall of the Phytophthora infestans lineage that triggered the Irish potato famine
        Kentaro Yoshida; Verena J. Schuenemann; Liliana M. Cano; Marina Pais; Bagdevi Mishra; Rahul Sharma; Chirsta Lanz; Frank N. Martin; Sophien Kamoun; Johannes Krause; Marco Thines; Detlef Weigel; Hernan A. Burbano
        ELIFE, May 2013, Peer-reviewed
      • Deployment of the Burkholderia glumae type III secretion system as an efficient tool for translocating pathogen effectors to monocot cells
        Shailendra Sharma; Shiveta Sharma; Akiko Hirabuchi; Kentaro Yoshida; Koki Fujisaki; Akiko Ito; Aiko Uemura; Ryohei Terauchi; Sophien Kamoun; Kee Hoon Sohn; Jonathan D. G. Jones; Hiromasa Saitoh
        PLANT JOURNAL, May 2013, Peer-reviewed
      • OsLG1 regulates a closed panicle trait in domesticated rice
        Takashige Ishii; Koji Numaguchi; Kotaro Miura; Kentaro Yoshida; Pham Thien Thanh; Than Myint Htun; Masanori Yamasaki; Norio Komeda; Takashi Matsumoto; Ryohei Terauchi; Ryo Ishikawa; Motoyuki Ashikari
        Nature Genetics, Apr. 2013, Peer-reviewed
      • QTL-seq: rapid mapping of quantitative trait loci in rice by whole genome resequencing of DNA from two bulked populations
        Hiroki Takagi; Akira Abe; Kentaro Yoshida; Shunichi Kosugi; Satoshi Natsume; Chikako Mitsuoka; Aiko Uemura; Hiroe Utsushi; Muluneh Tamiru; Shohei Takuno; Hideki Innan; Liliana M. Cano; Sophien Kamoun; Ryohei Terauchi
        PLANT JOURNAL, Apr. 2013, Peer-reviewed
      • Deep sequencing uncovers commonality in small RNA profiles between transgene-induced and naturally occurring RNA silencing of chalcone synthase-A gene in petunia
        Megumi Kasai; Hideo Matsumura; Kentaro Yoshida; Ryohei Terauchi; Akito Taneda; Akira Kanazawa
        BMC GENOMICS, Jan. 2013, Peer-reviewed
      • Crowdsourcing genomic analyses of ash and ash dieback - power to the people.
        Dan Maclean; Kentaro Yoshida; Anne Edwards; Lisa Crossman; Bernardo Clavijo; Matt Clark; David Swarbreck; Matthew Bashton; Patrick Chapman; Mark Gijzen; Mario Caccamo; Allan Downie; Sophien Kamoun; Diane Go Saunders
        GigaScience, 2013, Peer-reviewed
      • Arms race co-evolution of Magnaporthe oryzae AVR-Pik and rice Pik genes driven by their physical interactions
        Hiroyuki Kanzaki; Kentaro Yoshida; Hiromasa Saitoh; Koki Fujisaki; Akiko Hirabuchi; Ludovic Alaux; Elisabeth Fournier; Didier Tharreau; Ryohei Terauchi
        PLANT JOURNAL, Dec. 2012, Peer-reviewed
      • Mutation in OsLMS, a gene encoding a protein with two double-stranded RNA binding motifs, causes lesion mimic phenotype and early senescence in rice (Oryza sativa L.)
        Jerwin R. Undan; Muluneh Tamiru; Akira Abe; Kentaro Yoshida; Shunichi Kosugi; Hiroki Takagi; Kakoto Yoshida; Hiroyuki Kanzaki; Hiromasa Saitoh; Rym Fekih; Shailendra Sharma; Jesusa Undan; Masahiro Yano; Ryohei Terauchi
        GENES & GENETIC SYSTEMS, Jun. 2012, Peer-reviewed
      • Large-Scale Gene Disruption in Magnaporthe oryzae Identifies MC69, a Secreted Protein Required for Infection by Monocot and Dicot Fungal Pathogens
        Hiromasa Saitoh; Shizuko Fujisawa; Chikako Mitsuoka; Akiko Ito; Akiko Hirabuchi; Kyoko Ikeda; Hiroki Irieda; Kae Yoshino; Kentaro Yoshida; Hideo Matsumura; Yukio Tosa; Joe Win; Sophien Kamoun; Yoshitaka Takano; Ryohei Terauchi
        PLOS PATHOGENS, May 2012, Peer-reviewed
      • Genome sequencing reveals agronomically important loci in rice using MutMap
        Akira Abe; Shunichi Kosugi; Kentaro Yoshida; Satoshi Natsume; Hiroki Takagi; Hiroyuki Kanzaki; Hideo Matsumura; Kakoto Yoshida; Chikako Mitsuoka; Muluneh Tamiru; Hideki Innan; Liliana Cano; Sophien Kamoun; Ryohei Terauchi
        NATURE BIOTECHNOLOGY, Feb. 2012, Peer-reviewed
      • Multiple Translocation of the AVR-Pita Effector Gene among Chromosomes of the Rice Blast Fungus Magnaporthe oryzae and Related Species
        Izumi Chuma; Chihiro Isobe; Yuma Hotta; Kana Ibaragi; Natsuru Futamata; Motoaki Kusaba; Kentaro Yoshida; Ryohei Terauchi; Yoshikatsu Fujita; Hitoshi Nakayashiki; Barbara Valent; Yukio Tosa
        PLOS PATHOGENS, Jul. 2011, Peer-reviewed
      • A multifaceted genomics approach allows the isolation of the rice Pia-blast resistance gene consisting of two adjacent NBS-LRR protein genes
        Yudai Okuyama; Hiroyuki Kanzaki; Akira Abe; Kentaro Yoshida; Muluneh Tamiru; Hiromasa Saitoh; Takahiro Fujibe; Hideo Matsumura; Matt Shenton; Dominique Clark Galam; Jerwin Undan; Akiko Ito; Teruo Sone; Ryohei Terauchi
        PLANT JOURNAL, May 2011, Peer-reviewed
      • High-Throughput SuperSAGE for Digital Gene Expression Analysis of Multiple Samples Using Next Generation Sequencing
        Hideo Matsumura; Kentaro Yoshida; Shujun Luo; Eiji Kimura; Takahiro Fujibe; Zayed Albertyn; Roberto A. Barrero; Detlev H. Krueger; Guenter Kahl; Gary P. Schroth; Ryohei Terauchi
        PLOS ONE, Aug. 2010, Peer-reviewed
      • Association Genetics Reveals Three Novel Avirulence Genes from the Rice Blast Fungal Pathogen Magnaporthe oryzae
        Kentaro Yoshida; Hiromasa Saitoh; Shizuko Fujisawa; Hiroyuki Kanzaki; Hideo Matsumura; Kakoto Yoshida; Yukio Tosa; Izumi Chuma; Yoshitaka Takano; Joe Win; Sophien Kamoun; Ryohei Terauchi
        PLANT CELL, May 2009, Peer-reviewed
      • DNA polymorphism in the blast disease resistance gene Pita of the wild rice Oryza rufipogon and its related species
        Kentaro Yoshida; Naohiko T. Miyashita
        GENES & GENETIC SYSTEMS, Apr. 2009, Peer-reviewed
      • Rice blast association genetics reveals three novel avirulence genes, AVR-Pia, AVR-Pii, AVR-Pik/km/kp, whose products are recognized inside rice cells.
        Yoshida, K; Saitoh, H; Fujisawa, S; Kanzaki, H; Matsumura,H; Yoshida, K; Tosa, Y; Chuma, I; Takano, Y; Win, J; Kamoun, S; Terauchi, R
        Plant Cell, 2009
      • Searching for Effectors of Magnaporthe oryzae: A Multi-Faceted Genomics Approach
        Ryohei Terauchi; Joe Win; Sophien Kamoun; Hideo Matsumura; Hiromasa Saitoh; Hiroyuki Kanzaki; Kentaro Yoshida; Matt Shenton; Thomas Berberich; Shizuko Fujisawa; Akiko Ito; Yoshitaka Takano; Yukio Tosa
        ADVANCES IN GENETICS, GENOMICS AND CONTROL OF RICE BLAST DISEASE, 2009, Peer-reviewed
      • DNA polymorphism in the SUPERWOMAN1 (SPW1) locus of the wild rice Oryza rufipogon and its related species
        Chika Teranishi; Kentaro Yoshida; Naohiko T. Miyashita
        GENES & GENETIC SYSTEMS, Oct. 2008, Peer-reviewed
      • SuperSAGE array: the direct use of 26-base-pair transcript tags in oligonucleotide arrays
        H Matsumura; KH Bin Nasir; K Yoshida; A Ito; G Kahl; DH Kruger; R Terauchi
        NATURE METHODS, Jun. 2006, Peer-reviewed
      • Nucleotide polymorphism in the Adh2 region of the wild rice Oryza rufipogon
        K Yoshida; N Miyashita
        THEORETICAL AND APPLIED GENETICS, Oct. 2005, Peer-reviewed
      • DNA variation in the metallothionein genes in wild rice Oryza rufipogon: Relationship between DNA sequence polymorphism, codon bias and gene expression
        NT Miyashita; K Yoshida; T Ishii
        GENES & GENETIC SYSTEMS, Jun. 2005, Peer-reviewed
      • Nucleotide polymorphism in the Adh1 locus region of the wild rice Oryza rufipogon
        K Yoshida; NT Miyashita; T Ishii
        THEORETICAL AND APPLIED GENETICS, Nov. 2004, Peer-reviewed
      • DNA polymorphism at the ACAULIS5 locus of the wild plant Arabidopsis thaliana
        K Yoshida; T Kamiya; A Kawabe; NT Miyashita
        GENES & GENETIC SYSTEMS, Feb. 2003, Peer-reviewed

      Misc.

      • Identification of the causal gene in bread wheat early flowering strain obtained from gamma-ray irradiated population
        古村翔也; 小林史典; 大野陽子; 半田裕一; 吉田健太郎
        育種学研究, 2023
      • Identifying causal loci of the hybrid necrosis between the AuAuBBAmAm synthetic hexaploids and common wheat
        與田悠人; 野口微風子; 古村翔也; 村田和樹; 岡田萌子; 岡田萌子; 岡田萌子; 水野信之; 小林史典; 西村和紗; 井上喜博; 那須田周平; 松岡由浩; 吉田健太郎
        育種学研究, 2023
      • Alien chromosome fragment introgression to Triticum aestivum L. using Pairing homoeologous 2 deletion lines
        田渕雅啓; 岡田萌子; 岡田萌子; 岡田萌子; 道川麻美; 井上喜博; 西村和紗; 水野信之; 清水健太郎; 清水健太郎; 小林史典; 宅見薫雄; 吉田健太郎
        育種学研究, 2023
      • 早生型合成コムギへのパンコムギ品種戻し交配後選抜系統のグラフィカルジェノタイピング
        古村翔也; 吉田健太郎; 三田聖人; 池田達哉; 佐藤和広; 村井耕二; 宅見薫雄
        育種学研究, 2019
      • ギニアヤムのゲノム解析
        TAMIRU Muluneh; 夏目俊; 高木宏樹; WHITE Benjamin; 清水元樹; 吉田健太郎; 八重樫弘樹; 植村亜衣子; 及川香梨; 阿部陽; 浦崎直也; 松村英生; BABIL Pachakkil; 山中慎介; 松本亮; 村中聡; GIRMA Gezahegn; LOPEZ-MONTES Antonio; GEDIL Melaku; BHATTACHARJEE Rnjana; ABBERTON Michael; KUMAR P. Lava; RABBI Ismail; 辻村真衣; 寺地徹; HAERTY Wilfried; CORPAS Manuel; KAMOUN Sophien; KAHL Guenter; 高木洋子; ASIEDU Robert; 寺内良平; 寺内良平
        日本植物細胞分子生物学会大会・シンポジウム講演要旨集, 2016
      • イネいもち病菌エフェクターとターゲットとなる宿主因子の探索およびその育種的利用に向けて
        清水元樹; 中野友貴; 吉田健太郎; 神崎洋之; 寺内良平; 齋藤宏昌
        育種学研究, 2016
      • イネいもち病菌感染オオムギ葉のRNA-seq解析によるエフェクター候補遺伝子の探索
        清水元樹; 中野友貴; 吉田健太郎; 小林光智衣; 寺内良平; 齋藤宏昌
        日本植物病理学会大会プログラム・講演要旨予稿集, 2016
      • Identification of the causal gene for early flowering wheat mutant using whole genome sequencing
        古村翔也; 小林史典; 大野陽子; 半田裕一; 半田裕一; 吉田健太郎
        育種学研究, 2020
      • Genome analyses of a Triticum aestivum cv. ‘Kitahonami’ mutant revealed the causal genome region of preharvest sprouting tolerance
        古村翔也; 神野裕信; 其田達也; 宅見薫雄; 小林史典; 吉田健太郎
        育種学研究, 2020
      • Whole-genome sequencing of the gamma-irradiated wheat mutants identified the causative deletions of the mutant phenotypes
        古村翔也; 神野裕信; 其田達也; 大野陽子; 半田裕一; 半田裕一; 宅見薫雄; 小林史典; 吉田健太郎
        育種学研究, 2021
      • Nucleotide diversity of a grain softness protein 1 gene GSP-U1 in wild wheat relative Aegilops umbellulata
        Moeko Okada; Kentaro Yoshida; Shigeo Takumi
        Wheat Information Service, Oct. 2018
      • Core microbiomes for sustainable agroecosystems
        Hirokazu Toju; Kabir G. Peay; Masato Yamamichi; Kazuhiko Narisawa; Kei Hiruma; Ken Naito; Shinji Fukuda; Masayuki Ushio; Shinji Nakaoka; Yusuke Onoda; Kentaro Yoshida; Klaus Schlaeppi; Yang Bai; Ryo Sugiura; Yasunori Ichihashi; Kiwamu Minamisawa; E. Toby Kiers
        Nature Plants, 01 May 2018, Peer-reviewed
      • Lessons in effector and NLR biology of plant-microbe systems
        Aleksandra Białas; Erin K. Zess; Juan Carlos De La Concepcion; Marina Franceschetti; Helen G. Pennington; Kentaro Yoshida; Jessica L. Upson; Emilie Chanclud; Chih-Hang Wu; Thorsten Langner; Abbas Maqbool; Freya A. Varden; Lida Derevnina; Khaoula Belhaj; Koki Fujisaki; Hiromasa Saitoh; Ryohei Terauchi; Mark J. Banfield; Sophien Kamoun
        Molecular Plant-Microbe Interactions, 01 Jan. 2018, Peer-reviewed
      • Transient expression in the wheat leaf cells with low-pressure gene delivery system
        Naoko Mizoo; Shigeo Takumi; Kentaro Yoshida
        Wheat Information Service, Dec. 2017, Peer-reviewed, Corresponding author
      • High-quality RNA isolation from wheat immature grains
        Shigeo Takumi; Moeko Okada; Asami Michikawa; Yuka Miki; Ryoko Ohno; Kentaro Yoshida
        Wheat Information Service, Aug. 2017, Peer-reviewed
      • Whole genome sequencing approaches to understand Magnaporthe-rice interactions
        Ryohei Terauchi; Hiroyuki Kanzaki; Koki Fujisaki; Hiroki Takagi; Akira Abe; Kentaro Yoshida; Yudai Okuyama; Muluneh Tamiru; Hiromasa Saitoh
        Physiological and Molecular Plant Pathology, 16 Feb. 2016, Peer-reviewed
      • Rice blast resistance-inducing mechanisms via effector recognition by NLR immune receptors
        SAITOH H; KANZAKI H; FUJISAKI K; TAKAGI H; YOSHIDA K; TERAUCHI R
        Japanese Journal of Phytopathology, 2016
      • Computational analyses of ancient pathogen DNA from herbarium samples: Challenges and prospects
        Kentaro Yoshida; Eriko Sasaki; Sophien Kamoun
        Frontiers in Plant Science, 24 Sep. 2015, Peer-reviewed, Lead author, Corresponding author
      • ペレニアルライグラスいもち病菌のコムギに対する非病原力遺伝子PWT3のコムギいもち病菌における変異とRwt3保有コムギ品種への適応
        井上喜博; TRINH V; 吉田健太郎; 寺内良平; 中馬いづみ; 土佐幸雄
        日本植物病理学会大会プログラム・講演要旨予稿集, 10 Mar. 2015
      • 非病原力遺伝子PWT3の破壊によるライグラスいもち病菌のコムギへの病原性獲得
        TRINH V; 井上喜博; 吉田健太郎; 草場基章; 寺内良平; 中馬いづみ; 土佐幸雄
        日本植物病理学会大会プログラム・講演要旨予稿集, 10 Mar. 2015
      • エンバクいもち病菌のコムギに対する非病原力遺伝子PWT3のクローニングおよびその進化過程の解析
        TRINH Vy; 井上喜博; 吉田健太郎; 寺内良平; 中馬いづみ; 土佐幸雄
        日本植物病理学会大会プログラム・講演要旨予稿集, 10 May 2014
      • エンバクいもち病菌のコムギに対する非病原力遺伝子PWT4のクローニングおよびその進化過程の解析
        井上喜博; TRINH Vy; 吉田健太郎; 三岡周子; 麻野北斗; 寺内良平; 中馬いづみ; 土佐幸雄
        日本植物病理学会大会プログラム・講演要旨予稿集, 10 May 2014
      • Top 10 oomycete pathogens in molecular plant pathology.
        Sophien Kamoun; Oliver Furzer; Jonathan; D. G. Jones; Howard; S. Judelson; Gul Shad Ali; Ronaldo J; D. Dalio; Sanjoy Guha Roy; Leonardo Schena; Antonios Zambounis; Franck Panabières; David Cahill; Michelina Ruocco; Andreia Figueiredo; Xiao-Ren Chen; Jon Hulvey; Remco Stam; Kurt Lamour; Mark Gijzen; Brett M. Tyler; Niklaus J. Grünwald; M. Shahid Mukhtar; Daniel F. A. Tomé; Mahmut Tör; Guido Van Den Ackerveken; John McDowell; Fouad Daayf; William E. Fry; Hannele Lindqvist-Kreuze; Harold J. G. Meijer; Benjamin Petre; Jean Ristaino; Kentaro Yoshida; Paul R. J. Birch; Francine Govers
        Molecular Plant Pathology, 2014, Peer-reviewed
      • The rise and fall of the Phytophthora infestans lineage that triggered the Irish potato famine (vol 2, e00731, 2013)
        Kentaro Yoshida; Verena J. Schuenemann; Lililana M. Cano; Marina Pais; Bagdevi Mishra; Rahul Sharma; Christa Lanz; Frank N. Martin; Sophien Kamoun; Johannes Krause; Marco Thines; Detlef Weigel; Hernan A. Burbano
        ELIFE, Jul. 2013
      • 次世代シーケンサーを用いたエンバクいもち病菌のコムギに対する非病原力遺伝子PWT4の同定
        井上喜博; 吉田健太郎; 三岡周子; 麻野北斗; 寺内良平; 中馬いづみ; 土佐幸雄
        日本植物病理学会大会プログラム・講演要旨予稿集, 21 Mar. 2013
      • 次世代シーケンサーを用いた新たな原因遺伝子同定法 イネ有用遺伝子領域同定への応用
        寺内良平; 阿部陽; 高木宏樹; 小杉俊一; 吉田健太郎; 夏目俊; 八重樫弘樹; TAMIRU Muluneh; 神崎洋之; 松村英生
        化学と生物, 2013
      • Harnessing the collective intelligence in response to Chalara dieback of ash.
        Diane G.O. Saunders; Kentaro Yoshida
        Microbiologist, 2013
      • From pathogen genomes to host plant processes: the power of plant parasitic oomycetes.
        Marina Pais; Joe Win; Kentaro Yoshida; Graham J Etherington; Liliana M Cano; Sylvain Raffaele; Mark J Banfield; Alex Jones; Sophien Kamoun; Diane Go Saunders
        Genome biology, 2013, Peer-reviewed
      • Deep sequencing analysis reveals commonality in small RNA production between co-suppression and naturally occurring RNA silencing in petunia
        Megumi Kasai; Hideo Matsumura; Kentaro Yoshida; Ryohei Terauchi; Akito Taneda; Akira Kanazawa
        GENES & GENETIC SYSTEMS, Dec. 2012
      • Whole genome sequencing and future breeding of rice
        Ryohei Terauchi; Akira Abe; Hiroki Takagi; Kentaro Yoshida; Shunichi Kosugi; Satoshi Natsume; Hiroki Yaegashi; Hiroyuki Kanzaki; Hideo Matsumura; Chikako Mitsuoka; Hiroe Utsushi; Muluneh Tamiru
        JOURNAL OF PLANT BIOCHEMISTRY AND BIOTECHNOLOGY, Oct. 2012, Peer-reviewed
      • いもち病菌非病原力遺伝子AVR‐Piztの特殊性とそのエフェクター機能の重要性に関する一考察
        角圭人; 中馬いづみ; 草場基章; 吉田健太郎; 寺内良平; 土佐幸雄
        日本植物病理学会大会プログラム・講演要旨予稿集, 15 Mar. 2012
      • いもち病菌非病原力遺伝子のMultiple translocationはなぜ起こったか?欠失/再獲得仮説
        中馬いづみ; 古田純一; 草場基章; 吉田健太郎; 寺内良平; 藤田佳克; 中屋敷均; VALENT Barbara; 土佐幸雄
        日本植物病理学会大会プログラム・講演要旨予稿集, 15 Mar. 2012
      • 全ゲノム情報を活用したイネ-いもち病菌相互作用の解析
        寺内良平; 吉田健太郎; 奥山雄大; 神崎洋之; 藤崎恒喜; 高木宏樹; 阿部陽; TAMIRU Muluneh; 齋藤宏昌
        日本植物病理学会植物感染生理談話会論文集, 2012
      • SuperSAGE: Powerful serial analysis of gene expression
        Hideo Matsumura; Naoya Urasaki; Kentaro Yoshida; Detlev H. Krüger; Günter Kahl; Ryohei Terauchi
        Methods in Molecular Biology, 2012, Peer-reviewed
      • Effector Biology of Plant-Associated Organisms: Concepts and Perspectives.
        J Win; A Chaparro-Garcia; K Belhaj; D G O Saunders; K Yoshida; S Dong; S Schornack; C Zipfel; S Robatzek; S A Hogenhout; S Kamoun
        Cold Spring Harbor Symposia on Quantitative Biology, 2012, Peer-reviewed
      • Identification of genomic regions linked to phenotype by whole genome sequencing of bulked DNA in rice
        Akira Abe; Shunichi Kosugi; Kentaro Yoshida; Tamiru Muluneh; Hiroki Takagi; Satoshi Natsume; Tsutomu Sasaki; Ryohei Terauchi
        GENES & GENETIC SYSTEMS, Dec. 2011
      • Identifying rice genes by WGS: use of large scale mutant lines and RILs
        Ryohei Terauchi; Akira Abe; Shun-ichi Kosugi; Kentaro Yoshida; Satoshi Natsume; Hiroki Takagi; Hiroyuki Kanzaki; Hideo Matsumura; Kakoto Yoshida; Chikako Mitsuoka; Hiroe Utsushi; Mulneh Tamiru; Hideki Innan
        GENES & GENETIC SYSTEMS, Dec. 2011
      • Identification of domesticated genomic regions in rice based on population genomic analysis
        Tomoyuki Kado; Eriko Sasaiu; Kentaro Yoshida; Jeffrey A. Fawcett; Ryuichi Sugino; Shohei Takuno; Shunichi Kosugi; Satoshi Natsume; Chikako Mitsuoka; Aiko Uemura; Akira Abe; Takashige Ishii; Ryohei Terauchi; Hideki Innan
        GENES & GENETIC SYSTEMS, Dec. 2011
      • いもち病菌集団Pyricularia spp.における非病原力遺伝子AVR‐Pikの染色体彷徨―特に過剰染色体の関与について
        中馬いづみ; 今井誉子; 古田純一; 角圭人; 草場基章; 吉田健太郎; 寺内良平; 土佐幸雄
        日本植物病理学会大会プログラム・講演要旨予稿集, 11 Mar. 2011
      • いもち病菌集団Pyricularia spp.における非病原力遺伝子AVR‐PiaおよびAVR‐Piiの染色体彷徨
        古田純一; 中馬いづみ; 大窪貴子; 草場基章; 吉田健太郎; 寺内良平; 曾根輝雄; 土佐幸雄
        日本植物病理学会大会プログラム・講演要旨予稿集, 11 Mar. 2011
      • 非病原力遺伝子AVR‐Piztはいもち病菌集団において安定して第7染色体に存在する
        角圭人; 中馬いづみ; 古田純一; 草場基章; 吉田健太郎; 寺内良平; 土佐幸雄
        日本植物病理学会大会プログラム・講演要旨予稿集, 11 Mar. 2011
      • いもち病菌集団における非病原力遺伝子AVR‐Piiファミリーの解析
        古田純一; 中馬いづみ; 草場基章; 吉田健太郎; 寺内良平; 土佐幸雄
        日本植物病理学会報, 25 Feb. 2011
      • SSRマーカーおよび分泌タンパク質コード遺伝子を用いたイネいもち病菌連鎖地図の改良
        内藤大貴; 諸石雅彦; 中馬いづみ; 吉田健太郎; 寺内良平; 土佐幸雄; 藤田佳克; 草場基章
        日本植物病理学会報, 25 Feb. 2011
      • 日本産イネいもち病菌におけるPex31ホモログコード遺伝子が座乗する余剰染色体の特徴付け
        持田泰雅; 馬場崎翔一; 中馬いづみ; 吉田健太郎; 寺内良平; 土佐幸雄; 藤田佳克; 草場基章
        日本植物病理学会報, 25 Feb. 2011
      • イネいもち病抵抗性遺伝子Piaの単離・同定
        神崎洋之; 奥山雄大; 阿部陽; 吉田健太郎; 松村英生; 斉藤宏昌; 伊東明子; 曾根輝雄; 寺内良平
        育種学研究, 2011
      • 2種のNBS-LRRからなるイネいもち病抵抗性遺伝子Piaの単離・同定
        神崎洋之; 奥山雄大; 阿部陽; 吉田健太郎; 松村英生; 斉藤宏昌; 伊東明子; 曾根輝雄; 寺内良平
        日本植物病理学会大会プログラム・講演要旨予稿集, 2011
      • Studying genome-wide DNA polymorphisms to understand Magnaporthe-rice interactions
        Ryohei Terauchi; Kentaro Yoshida; Hiromasa Saitoh; Hiroyuki Kanzaki; Yudai Okuyama; Koki Fujisaki; Ayako Miya; Akira Abe; Muluneh Tamiru; Yukio Tosa
        AUSTRALASIAN PLANT PATHOLOGY, 2011, Peer-reviewed
      • High-throughput SuperSAGE
        Hideo Matsumura; Kentaro Yoshida; Shujun Luo; Detlev H Krüger; Günter Kahl; Gary P Schroth; Ryohei Terauchi
        Methods in molecular biology, 2011, Peer-reviewed
      • Towards population genomics of rice-Magnaporthe interactions
        Ryohei Terauchi; Kentaro Yoshida
        GENES & GENETIC SYSTEMS, Dec. 2010
      • イネいもち病菌84R‐62BとY93‐245c‐2の子孫菌株で観察されたPex31ホモログの転座
        持田泰雅; 橋川慎吾; 成富毅誌; 中馬いづみ; 吉田健太郎; 寺内良平; 土佐幸雄; 藤田佳克; 草場基章
        日本植物病理学会大会プログラム・講演要旨予稿集, 30 Mar. 2010
      • 日本産イネいもち病菌のゲノムに分布するPex31ホモログの数
        成富毅誌; 馬場崎翔一; 持田泰雅; 今井誉子; 中馬いづみ; 吉田健太郎; 寺内良平; 土佐幸雄; 藤田佳克; 草場基章
        日本植物病理学会大会プログラム・講演要旨予稿集, 30 Mar. 2010
      • Super‐SAGE法を用いたエンバクいもち病菌のコムギに対する非病原力遺伝子PWT4の候補遺伝子の選抜
        井上喜博; 麻野北斗; 中馬いづみ; 吉田健太郎; 松村英生; 寺内良平; 土佐幸雄
        日本植物病理学会報, 25 Feb. 2010
      • イネいもち病菌株84R‐62B,Y93‐245c‐2およびその子孫菌株F1‐327におけるPex31ホモログの座乗染色体
        持田泰雅; 成富毅誌; 中馬いづみ; 吉田健太郎; 寺内良平; 土佐幸雄; 藤田佳克; 草場基章
        日本植物病理学会報, 25 Feb. 2010
      • 分泌タンパク質遺伝子のマッピングによるいもち病菌染色体高度可変領域の同定
        浅野峻介; 中馬いづみ; 古田純一; 今井誉子; 草場基章; 吉田健太郎; 寺内良平; 土佐幸雄
        日本植物病理学会報, 25 Feb. 2010
      • さまざまないもち病菌菌株における非病原力遺伝子AVR‐Piiの周辺構造
        古田純一; 中馬いづみ; 草場基章; 吉田健太郎; 寺内良平; 土佐幸雄
        日本植物病理学会報, 25 Feb. 2010
      • イネいもち病菌株84R‐62BおよびY93‐245c‐2の交配系におけるPex31ホモログの遺伝分離
        成富毅誌; 持田泰雅; 中馬いづみ; 吉田健太郎; 寺内良平; 土佐幸雄; 藤田佳克; 草場基章
        日本植物病理学会報, 25 Feb. 2010
      • Towards population genomics of effector-effector target interactions
        Ryohei Terauchi; Kentaro Yoshida
        NEW PHYTOLOGIST, 2010, Peer-reviewed
      • いもち病菌集団における非病原力遺伝子AVR‐Piiの分布
        古田純一; 中馬いづみ; 草場基章; 吉田健太郎; 寺内良平; 土佐幸雄
        日本植物病理学会報, 25 Aug. 2009
      • いもち病菌における非病原力遺伝子の比較解析とその進化過程に関する考察
        中馬いづみ; 草場基章; 大窪貴子; 古田純一; 萬野英俊; 吉田健太郎; 寺内良平; 曾根輝雄; 土佐幸雄
        日本植物病理学会報, 25 Aug. 2009
      • いもち病菌集団における非病原力遺伝子AVR‐Piaの分布
        大窪貴子; 中馬いづみ; 吉田健太郎; 中屋敷均; 寺内良平; 土佐幸雄
        日本植物病理学会報, 25 Feb. 2009
      • イネいもち病抵抗性遺伝子Pi-aの単離とその相同遺伝子の集団遺伝学的解析
        奥山雄大; 吉田健太郎; 神崎洋之; 斉藤宏昌; 阿部陽; 藤部貴宏; OLI Muluneh; 松村英生; 曾根輝雄; 寺内良平
        日本植物病理学会報, 2009
      • プロトプラスト一過的発現解析によるイネいもち病抵抗性遺伝子Pi-aの同定
        神崎洋之; 奥山雄大; 吉田健太郎; 阿部陽; 松村英生; 斉藤宏昌; 曾根輝雄; 寺内良平
        育種学研究, 2009
      • イネ葉鞘由来プロトプラストを用いた一過的発現系による細胞死の迅速検出システム
        神崎洋之; 吉田健太郎; 奥山雄大; 寺内良平
        日本植物細胞分子生物学会大会・シンポジウム講演要旨集, 2009
      • (100) A Secreted Protein MC69 is Required for Pathogenicity of the Rice Blast Fungus Magnaporthe oryzae(Abstracts of the Papers Presented at the Annual Meeting of the Society)
        Saitoh H; Fujisawa S; Ito A; Mitsuoka C; Yoshida K; Matsumura H; Kamo M; Takano Y; Terauchi R
        Annals of the Phytopathological Society of Japan, 25 Aug. 2008
      • 非病原力遺伝子としての機能からみたいもち病菌AVR‐Pitaの起源と進化
        中馬いづみ; 吉田健太郎; 中屋敷均; 眞山滋志; 土佐幸雄
        日本植物病理学会報, 25 Aug. 2008
      • いもち病菌非病原力遺伝子AVR‐Pitaホモログのタイピング,マッピングおよび機能の比較解析
        中馬いづみ; 大鷹和也; 草場基章; 吉田健太郎; 中屋敷均; 眞山滋志; 土佐幸雄
        日本植物病理学会報, 25 Aug. 2007
      • いもち病菌非病原力遺伝子Avr‐Pitaの座乗染色体変動過程とその機構
        中馬いづみ; 吉田健太郎; 磯部千尋; 土佐幸雄; 中屋敷均; 眞山滋志
        日本植物病理学会報, 25 Nov. 2006

      Presentations

      • Analysis of the genomic region associated with pre-harvest sprouting tolerance identified in gamma-ray irradiated wheat mutant
        Shoya Komura; Hironobu Jinno; Tatsuya Sonoda; Youko Oono; Hirokazu Handa; Fuminori; Kobayashi; Kentaro Yoshida
        15th International Symposium on Pre-Harvest Sprouting in Cereals, 05 Oct. 2023
      • コムギにおけるtRNA -gRNA arrayを利用した多重ゲノム編集個体の作製
        古村翔也; 安倍史高; 加星光子; 吉田健太郎
        日本育種学会第145回講演会, 17 Mar. 2024
      • NBRP・コムギ事業:大規模交配集団の整備
        太田敦士; 新田みゆき; 那須田周平; 吉田健太郎; 堺俊之; 竹中祥太朗; 松岡由浩; 森直樹; 西嶋遼; 寺内良平
        日本育種学会第145回講演会, 17 Mar. 2024
      • NBRP・コムギ事業:大規模交配集団の整備
        太田敦士; 新田みゆき; 那須田周平; 吉田健太郎; 堺俊之; 竹中祥太朗; 松岡由浩; 森直樹; 西嶋遼; 寺内良平
        第18回ムギ類研究会, 23 Dec. 2023
      • tRNA プロセシングを利用したコムギの多重ゲノム編集個体の作製
        古村翔也; 安倍史高; 加星光子; 吉田健太郎
        第18回ムギ類研究会, 23 Dec. 2023
      • アグロバクテリウム法によるAegilops umbellulata Zhuk.の形質転換法の確立
        河村凌; 溝尾直子; 古村翔也; 加星光子; 安倍史高; 井上喜博; 吉田健太郎
        第18回ムギ類研究会, 23 Dec. 2023
      • パンコムギ品種Fielderおける重複遺伝子の同時ゲノム編集の試み
        與田悠人; 古村翔也; 加星光子; 安倍史高; 井上喜博; 吉田健太郎
        第18回ムギ類研究会, 23 Dec. 2023
      • パールミレット完熟種子を用いたアグロバクテリウム形質転換法の開発
        青木亮磨; 石井孝佳; 吉田健太郎
        第18回ムギ類研究会, 23 Dec. 2023
      • Abnormal chromosome behaviors in meiosis and phenotypic variations in the octaploid hybrids of Triticum turgidum and Aegilops columnaris
        Adam Izzuddin; Shigeo Takumi; Kentaro Yoshida
        第18回ムギ類研究会, 23 Dec. 2023
      • AABBUU 合成倍数体と pairing homoeologous 2 欠失変異体の交雑後代における塩ストレス耐性の評価
        田渕雅啓; 古村翔也; 岡田萌子; 道川麻美; 井上喜博; 西村和紗; 吉田健太郎
        第18回ムギ類研究会, 23 Dec. 2023
      • 普通系コムギと二粒系コムギの五倍体雑種における着粒率の変異
        吉田健太郎
        第18回ムギ類研究会, 23 Dec. 2023
      • 田中正武アーカイブズ整備とコムギリソースへの紐付け
        太田 敦士; 新田 みゆき; 齋藤 歩; 平澤 美保子; 松岡 由浩; 川浦 香奈子; 大田 正次; 石川 裕子; 吉田 健太郎; 那須田 周平; 寺内 良平
        日本育種学会第144回講演会, 17 Sep. 2023
      • Pairing homoeologous 2 欠失変異体を利用したパ ンコムギへの異種染色体断片導入
        田渕 雅啓; 岡田 萌子; 道川 麻美; 井上 喜博; 西村 和紗; 水野 信之; 清水 健太郎; 小林 史典; 宅見 薫雄; 吉田 健太郎
        日本育種学会第144回講演会, 17 Sep. 2023
      • AuAuBBAmAm合成六倍体コムギとパンコムギの間でみられる雑種ネクローシス原因遺伝子座領域の同定
        與田 悠人; 野口 微風子; 古村 翔也; 村田 和樹; 岡田 萌子; 水野 信之; 小林 史典; 西村 和紗; 井上 喜博; 那須田 周平; 松岡 由浩; 吉田 健太郎
        日本育種学会第144回講演会, 17 Sep. 2023
      • プレブリーディング集団作出に向けたコムギ近縁野生種 Aegilops umbellulata Zhuk. 33 系統とパンコ ムギの交雑
        孫 櫻; 笠澄 望; 岡田 萌子; 吉田 健太郎; 松岡 由浩
        日本育種学会第144回講演会, 17 Sep. 2023
      • パールミレット完熟種子を用いたアグロバクテリウム形質転換法の構築
        青木 亮磨; 石井 孝佳; 吉田健太郎
        日本育種学会第144回講演会, 17 Sep. 2023
      • パンコムギガンマ線照射集団由来の早生系統の原因遺伝子領域の同定
        古村 翔也; 小林 史典; 大野 陽子; 半田 裕一; 吉田 健太郎
        日本育種学会第144回講演会, 16 Sep. 2023
      • コムギ野生近縁種 Aegilops umbellulata Zhuk. におけるうどんこ病菌侵入後抵抗性の原因遺伝子座の同定
        河村 凌; 岡田 萌子; 古村 翔也; 清水 健太郎; 西村 和紗; 井上 喜博; 吉田 健太郎
        日本育種学会第144回講演会, 16 Sep. 2023
      • Genetic analyses of hybrid weakness in Triticum and Aegilops species.
        K. Yoshida
        第17回ムギ類研究会, 16 Dec. 2022
      • Genetic analysis of post-invasion resistance in Aegilops umbellulata Zhuk. against powdery mildew
        河村凌; 岡田萌子; 古村翔也; 清水健太郎; 井上喜博; 吉田健太郎
        第17回ムギ類研究会
      • Confirmation of alien chromosome fragments with genomic in situ hybridization
        田渕雅啓; 吉田健太郎; 井上喜博
        第17回ムギ類研究会
      • Constructing transformation method of pearl millet targeting wheat breeding
        青木亮磨; 石井孝佳; 吉田健太郎
        第17回ムギ類研究会
      • Search of the genes responsible for hybrid dwarfism in AABBAmAm synthetic hexaploids
        中野咲良; 道川麻美; 岡田萌子; 吉田健太郎
        第17回ムギ類研究会
      • Search for genes that cause necrosis in the hybrids between AABBAmAm synthetic hexaploid wheat and bread wheat
        野口微風子; 岡田萌子; 松岡由浩; 吉田健太郎
        第17回ムギ類研究会
      • Association between traits and genetic differentiation in wild wheat relative Aegilops umbellulata Zhuk.
        孫櫻; 笠澄望; 岡田萌子; 松岡由浩; 吉田健太郎
        第17回ムギ類研究会
      • γ線照射により作出された パンコムギ短稈変異体の 表現型原因変異の同定
        古村翔也; 蝶野真喜子; 松中仁; 中村和弘; 石川吾郎; 小林史典; 吉田健太郎
        日本育種学会第143回講演会
      • 全ゲノムシーケンスを用いたパンコムギ突然変異体からの原因突然変異の同定
        古村翔也; 小林史典; 神野裕信; 其田達也; 蝶野真喜子; 大野陽子; 半田裕一; 吉田健太郎
        第17回ムギ類研究会, Invited
      • The rapid identification of genomic regions responsible for gamma-irradiated wheat mutants by whole-genome sequencing
        Shoya Komura; Hironobu Jinno; Tatsuya Sonoda; Youko Oono; Hirokazu Handa; Fuminori Kobayashi; Kentaro Yoshida
        2nd International wheat congress
      • 野生一粒系コムギ間の雑種ネクローシス原因遺伝子の探索
        野口 微風子; 吉田 健太郎; 宅見 薫雄
        日本育種学会第139回講演会, 21 Mar. 2021
      • 野生コムギ近縁種 Aegilops umbellulata の形質分化と遺伝的分化との関連
        孫 櫻; 笠澄 望; 岡田 萌子; 宅見 薫雄; 吉田 健太郎
        日本育種学会第139回講演会, 21 Mar. 2021
      • 全ゲノムシーケンスによるコムギγ 線突然変異系統の表現型原因欠失領域の同定
        古村 翔也; 神野 裕信; 其田 達 也; 大野 陽子; 半田 裕一; 宅 見 薫雄; 小林 史典; 吉田 健太郎
        日本育種学会第139回講演会, 21 Mar. 2021
      • 異質倍数体植物の種間交雑種子に おける ChIP-seq 解析
        高松 鮎美; 長岐 清孝; 池田 陽子; 宅見 薫雄; 吉田 健太郎
        日本育種学会第139回講演会, 20 Mar. 2021
      • コムギ・エギロプス属の合成異質倍数体におけるゲノム間相互作用
        吉田健太郎
        第15回ムギ類研究会, 26 Dec. 2020, Invited
      • Microevolution of the wild wheat relative Aegilops umbellulata
        孫櫻; 笠澄望; 岡田萌子; 宅見薫雄; 吉田健太郎
        第15回ムギ類研究会, 26 Dec. 2020
      • Characterization of the hybrid dwarf of the AABBAmAm synthetic hexaploid
        野口微風子; 吉田健太郎; 宅見薫雄
        第15回ムギ類研究会, 26 Dec. 2020
      • ABA sensitivity of wild wheat relatives and their synthetic hexaploids
        大山晴加; 笠澄望; 宅見薫雄; 吉田健太郎
        第15回ムギ類研究会, 26 Dec. 2020
      • Genetic analysis of synthetic wheat lines that are derived from the same parent but exhibit different phenotypes
        松本翔; 三木由香; 吉田健太郎; 宅見薫雄
        第15回ムギ類研究会, 26 Dec. 2020
      • Characterization of the hybrid dwarf of the AABBAmAm synthetic hexaploid
        中野咲良; 道川麻美; 岡田萌子; 宅見薫雄; 吉田健太郎
        第15回ムギ類研究会, 26 Dec. 2020
      • The study towards identification of causative genes responsible for hybrid incompatibilities in crosses between tetraploid wheat and Aegilops tauschii
        松岡宏樹; 吉村信一; 森崎良太; 宅見薫雄; 吉田健太郎
        第15回ムギ類研究会, 26 Dec. 2020
      • パンコムギ変異体で同定された穂発芽耐性に関わるゲノム領域の解析
        古村翔也; 神野裕信; 其田達也; 小林史典; 吉田健太郎
        第15回ムギ類研究会, 26 Dec. 2020
      • Repeatome analysis of the genome of diploid Aegilops species
        田中紗弥; 長岐清孝; 吉田健太郎
        第15回ムギ類研究会, 26 Dec. 2020
      • Establishment of experimental method for ChIP using tetraploid wheat
        高松 鮎; 長岐 清; 池田 陽; 吉田 健太郎
        第15回ムギ類研究会, 26 Dec. 2020
      • 全ゲノム情報を利用したパンコムギ早生変異体 の原因遺伝子の同定
        古村 翔也; 小林 史典; 大野 陽子; 半田 裕 一; 吉田 健太郎
        日本育種学会第138回講演会, 11 Oct. 2020
      • 2倍体コムギ近縁野生種Aegilops umbellulataのRNA-seqデータを用いたゲノムワイド連関解析
        笠澄 望; 岡田 萌子; YOSHIDA KENTARO; TAKUMI SHIGEO
        第2回植物インフォマティクス研究会, Sep. 2019
      • Genome-wide association study of wild diploid wheat Aegilops umbellulata using RNA-seq-based genotyping data
        笠澄 望; 岡田 萌子; YOSHIDA KENTARO; TAKUMI SHIGEO
        日本育種学会第136回講演会, Sep. 2019
      • RNA-seq analysis of near-isogenic lines of two QTLs for exogenous ABA sensitivity in common wheat
        岡田 萌子; 松中 仁; 中村 和弘; 小林 史典; YOSHIDA KENTARO; TAKUMI SHIGEO
        日本育種学会第136回講演会, Sep. 2019
      • 野生一粒系コムギのRNA-seqデータに基づく多型情報の整備と利用
        道川 麻美; YOSHIDA KENTARO; 岡田 萌子; 佐藤 和広; TAKUMI SHIGEO
        第2回植物インフォマティクス研究会, Sep. 2019
      • 非モデル植物種の雑種個体におけるアレル特異的な遺伝子発現量推定法の検討
        YOSHIDA KENTARO; 高松 鮎美; TAKUMI SHIGEO
        第2回植物インフォマティクス研究会, Sep. 2019
      • RNA-seq analysis of germless grains crossing tetraploid wheat with wild tetraploid wheat relative Aegilops cylindrica
        高松 鮎美; YOSHIDA KENTARO; 佐藤 和広; 池田 達哉; TAKUMI SHIGEO
        日本育種学会第136回講演会, Sep. 2019
      • Genetic analysis of hybrid dwarf observed in synthetic hexaploid wheat lines crossed between tetraploid and wild einkorn wheat
        道川 麻美; YOSHIDA KENTARO; 佐藤 和広; TAKUMI SHIGEO
        日本育種学会第136回講演会, Sep. 2019
      • Graphical genotyping of selected wheat lines produced through crossing with early heading synthetic hexaploid wheat
        古村 翔也; YOSHIDA KENTARO; 三田 聖人; 池田 達哉; 佐藤 和広; 村井 耕二; TAKUMI SHIGEO
        日本育種学会第136回講演会, Sep. 2019
      • コムギ近縁野生種のサブゲノムを区別した解析手法の確立に向けて
        岡田 萌子; YOSHIDA KENTARO; 佐藤 和広; TAKUMI SHIGEO
        第2回植物インフォマティクス研究会, Sep. 2019
      • Genetic relationship among diploid wheat relatives based on genome-wide polymorphisms derived from RNA-seq data
        田中 紗弥夏; YOSHIDA KENTARO; 佐藤 和広; TAKUMI SHIGEO
        日本育種学会第136回講演会, Sep. 2019
      • High-density genetic map construction using GRAS-Di in recombinant inbred lines of Aegilops tauschii
        三木 祐香; 榎 宏征; 鈴木 一代; 稲森 稔; YOSHIDA KENTARO; TAKUMI SHIGEO
        日本育種学会第136回講演会, Sep. 2019
      • RNA-seq-based polymorphisms in the section Sitopsis species reveal the origin of wheat B-genome chromosomes
        Yuka Miki; Kentaro Yoshida; Kazuhiro Sato; TAKUMI SHIGEO
        1st International Wheat Congress, Jul. 2019
      • RNA-seq-based bulked segregant analysis of the causal U-genome gene for grass-clump dwarfism in interspecific hybrids between tetraploid wheat and wild wheat relative Aegilops umbellulata
        Moeko Okada; Kentaro Yoshida; Kazuhiro Sato; TAKUMI SHIGEO
        1st International Wheat Congress, Jul. 2019
      • Production and phenotypic analysis of synthetic allohexaploid lines having durum wheat and wild diploid relative genomes
        TAKUMI SHIGEO; Sami Michikawa; Miki Yuka; Sayaka Tanaka; Moeko Okada; Kiyotaka Nagaki; Kazuhiro Sato; Tatsuya Ikeda; Kentaro Yoshida; Yoshihiro Matsuoka
        1st International Wheat Congress, Jul. 2019
      • Phenotypic variation and RNA-seq-based genome-wide polymorphisms in wild diploid wheat relative Aegilops umbellulata
        Nozomi Kasazumi; Moeko Okada; Kentaro Yoshida; TAKUMI SHIGEO
        1st International Wheat Congress, Jul. 2019
      • Genome-wide marker development based on RNA sequencing of leaf transcripts in wild einkorn wheat
        Asami Michikawa; Kentaro Yoshida; Moeko Okada; Kazuhiro Sato; TAKUMI SHIGEO
        1st International Wheat Congress, Jul. 2019
      • Gene expression dynamics of the obligate filamentous pathogen Blumeria graminis and its host plant Aegilops umbellulata under the field environments
        Kentaro Yoshida; Naoko Mizoo; TAKUMI SHIGEO
        1st International Wheat Congress, Jul. 2019
      • 野生一粒系コムギのゲノムを持つ合成異質6倍体の表現型変異
        道川 麻美; YOSHIDA KENTARO; 長岐 清孝; TAKUMI SHIGEO
        日本育種学会第135回講演会, Mar. 2019
      • 野外環境におけるムギ類うどんこ病菌と宿主植物の遺伝子発現解析
        YOSHIDA KENTARO; 溝尾 直子; TAKUMI SHIGEO
        日本植物病理学会大会, Mar. 2019
      • 合成パンコムギを用いたタルホコムギ種子の硬軟質性変異の評価
        三木 祐香; 岡田萌子; YOSHIDA KENTARO; 池田 達哉; TAKUMI SHIGEO
        日本育種学会第135回講演会, Mar. 2019
      • ムギ類うどんこ病菌感染細胞におけるsingle-cell RNA-seqの開発
        三野 航司朗; 久保 稔; 八丈野 孝; TAKUMI SHIGEO; YOSHIDA KENTARO
        日本植物病理学会大会, Mar. 2019
      • コムギ近縁種Aegilops umbellulataがもつ二粒系コムギとの間の雑種矮性原因遺伝子の遺伝解析
        岡田 萌子; YOSHIDA KENTARO; 佐藤 和広; TAKUMI SHIGEO
        日本育種学会第135回講演会, Mar. 2019
      • RNA-seq BSA reveals the target region of hybrid incompatibility between tetraploid wheat and wild diploid wheat relative Aegilops umbellulata
        Moeko Okada; Kentaro Yoshida; Kazuhiro Sato; SHigeo Takumi
        The Plant and Animal Genome XXVII Conference, Jan. 2019
      • 野生一粒系コムギのRNA-seqデータに由来する多型情報の利用
        道川 麻美; YOSHIDA KENTARO; 岡田 萌子; 佐藤 和広; TAKUMI SHIGEO
        第13回ムギ類研究会, Nov. 2018
      • 野外におけるコムギ近縁野生種Aegilops umbellulataとうどんこ病菌の相互作用
        YOSHIDA KENTARO; 溝尾 直子; TAKUMI SHIGEO
        第13回ムギ類研究会, Nov. 2018
      • 二粒系コムギとタルホコムギ間の雑種クロロシスに関与するHch1領域からの候補遺伝子の探索
        吉村 信一; 森崎 良太; YOSHIDA KENTARO; TAKUMI SHIGEO
        第13回ムギ類研究会, Nov. 2018
      • 二粒系コムギとAegilops umbellulataの雑種に由来する合成6倍体の表現型へのUゲノムの影響
        岡田 萌子; YOSHIDA KENTARO; TAKUMI SHIGEO
        第13回ムギ類研究会, Nov. 2018
      • ムギ類single-cell RNA-seq技術の開発
        三野 航司朗; 久保 稔; 八丈野 孝; TAKUMI SHIGEO; YOSHIDA KENTARO
        第13回ムギ類研究会, Nov. 2018
      • パンコムギハイブリッドネクローシスのRNA-seq解析
        笠澄 望; YOSHIDA KENTARO; 佐藤 和広; TAKUMI SHIGEO
        第13回ムギ類研究会, Nov. 2018
      • タルホコムギpuroindoline遺伝子の多様性解析
        三木 祐香; 岡田 萌子; 池田 達哉; YOSHIDA KENTARO; TAKUMI SHIGEO
        第13回ムギ類研究会, Nov. 2018
      • RNA-seq解析による二粒系コムギとAegilops cylindrica間の交雑種子の発生異常の解析
        高松 鮎美; YOSHIDA KENTARO; 佐藤 和広; TAKUMI SHIGEO
        第13回ムギ類研究会, Nov. 2018
      • RNA-seqデータに基づくコムギC, M, Nゲノム2倍体近縁種間の遺伝的関係
        田中 紗弥夏; YOSHIDA KENTARO; 佐藤 和広; TAKUMI SHIGEO
        第13回ムギ類研究会, Nov. 2018
      • 二粒系コムギとAegilops umbellulataの間の雑種生育異常原因遺伝子の同定
        OKADA MOEKO; YOSHIDA KENTARO; SATO KAZUHIRO; TAKUMI SHIGEO
        平成30年度新学術領域研究若手の会, Oct. 2018
      • 近縁ゲノムに対して野生一粒系コムギが持つ生殖隔離遺伝子の検出
        MICHIKAWA ASAMI; YOSHIDA KENTARO; SATO KAZUHIRO; TAKUMI SHIGEO
        平成30年度新学術領域研究若手の会, Oct. 2018
      • トランスクリプトームで記述する植物ー絶対寄生菌の相互作用
        YOSHIDA KENTARO
        第1回 植物インフォマティクス研究会, Sep. 2018
      • Distinct features of hybrid growth abnormalities in interspecific crosses of two wild diploid wheat relatives to tetraploid wheat
        Shigeo Takumi; Moeko Okada; Kentaro Yoshida
        25th International Congress on Sexual Plant Reproduction, Jun. 2018, Invited
      • コムギ近縁野生種Aegilops umbellulataゲノムの種子形質への影響
        TAKUMI SHIGEO; 岡田 萌子; YOSHIDA KENTARO; 池田 達哉
        第10回グルテン研究会, May 2018
      • 野生2倍体コムギ近縁種Aegilops umbellulataの表現型多様性の異質合成6倍体への伝達
        岡田 萌子; YOSHIDA KENTARO; TAKUMI SHIGEO
        日本育種学会第133回講演会, Mar. 2018
      • 雑種生育不全を発症するコムギで発現量が増加するWRKY転写因子の解析
        大野 良子; 久木 康伸; YOSHIDA KENTARO; TAKUMI SHIGEO
        第59回日本植物生理学会年会, Mar. 2018
      • パンコムギ準等質遺伝子系統のRNA-seq解析によるハイブリッドネクローシスの解析
        笠澄 望; YOSHIDA KENTARO; 佐藤 和広; TAKUMI SHIGEO
        日本育種学会第133回講演会, Mar. 2018
      • RNA-seqデータに基づく一粒系コムギのゲノムワイド多型の検出とその利用
        道川 麻美; YOSHIDA KENTARO; 佐藤 和広; TAKUMI SHIGEO
        日本育種学会第133回講演会, Mar. 2018
      • RNA-seqデータからみたエギロプス属Sitopsis節の種間関係とパンコムギBゲノムの起原
        三木 祐香; YOSHIDA KENTARO; 佐藤 和広; TAKUMI SHIGEO
        日本育種学会第133回講演会, Mar. 2018
      • 二粒系コムギとタルホコムギの生殖隔離遺伝子Hch1とNet2領域の解析
        森崎 良太; 西嶋 遼; YOSHIDA KENTARO; TAKUMI SHIGEO
        第12回ムギ類研究会, Dec. 2017
      • 二粒系コムギとAegilops umbellulataの雑種に由来する合成6倍体の表現型の多様性
        岡田 萌子; YOSHIDA KENTARO; TAKUMI SHIGEO
        第12回ムギ類研究会, Dec. 2017
      • コムギ準等質遺伝子系統を用いたRNA-seqによるNe1とNe2染色体領域の検出
        笠澄 望; YOSHIDA KENTARO; 佐藤 和広; TAKUMI SHIGEO
        第12回ムギ類研究会, Dec. 2017
      • RNA-seqによる一粒系コムギのゲノムワイド多型の検出
        道川 麻美; YOSHIDA KENTARO; 佐藤 和広; TAKUMI SHIGEO
        第12回ムギ類研究会, Dec. 2017
      • RNA-seqによるタルホコムギ系統間の多型情報収集とそのインパクト
        西嶋 遼; YOSHIDA KENTARO; 松岡 由浩; TAKUMI SHIGEO
        第12回ムギ類研究会, Dec. 2017, Invited
      • RNA-seqによるSitopsis節5種のゲノムワイド多型の検出
        三木 祐香; YOSHIDA KENTARO; 佐藤 和広; TAKUMI SHIGEO
        第12回ムギ類研究会, Dec. 2017
      • Field transcriptome analysis of powdery mildew-infected leaves of wild wheat-related species Aegilops umbellulata
        YOSHIDA KENTARO; 溝尾 直子; TAKUMI SHIGEO
        第132回日本育種学会, Oct. 2017
      • 二粒系コムギと野生コムギAegilops umbellulataの間の生殖隔離
        岡田 萌子; YOSHIDA KENTARO; TAKUMI SHIGEO
        新学術領域研究平成29年度若手の会, Oct. 2017
      • Comparative analysis of grain hardness in synthetic hexaploid wheat lines from interspecific crosses between tetraploid wheat and Aegilops umbellulata
        岡田 萌子; 池田 達哉; YOSHIDA KENTARO; TAKUMI SHIGEO
        第132回日本育種学会, Oct. 2017
      • Application of the BrAD-seq method to detection of genome-wide polymorphisms among multiple accessions of Aegilops tauschii
        西嶋 遼; YOSHIDA KENTARO; TAKUMI SHIGEO
        第132回日本育種学会, Oct. 2017
      • 罹病葉において周期性の遺伝子発現パターンを示すBlumeria gramimis f.sp. triticiエフェクター様遺伝子群
        Kentaro Yoshida; Naoko Mizoo; Kazumasa Wakamori; Hiroshi Mineno; Shigeo Takumi
        平成 29 年度日本植物病理学会関西部会, Sep. 2017
      • The diary of a filamentous pathogen in field
        YOSHIDA KENTARO
        Plant biotic interaction workshop, Aug. 2017
      • DNA・RNAが刻む病原菌と植物+人の攻防
        YOSHIDA KENTARO
        NGS現場の会, May 2017
      • RNA sequencing revels genome-wide polymorphisms applicable to develop genetic markers in Aegilops umbellulata
        Moeko Okada; Kentaro Yoshida; Ryo Nishijima; Kazuhiro Sato; Shigeo Takumi
        13th International Wheat Genetics Symposium, Apr. 2017
      • Genetic marker development from RNA sequencing of Aegilops tauschii accessions and its application to fine mapping in synthetic hexaploid wheat
        Ryo Nishijima; Kentaro Yoshida; Yuka Motoi; Kazuhiro Sato; Shigeo Takumi
        13th International Wheat Genetics Symposium, Apr. 2017
      • 二粒系コムギのクロリナ変異NILsのRNA-seq解析
        NISHIGAKI KAYO; YOSHIDA KENTARO; SATO KAZUHIRO; WATANABE NOBUYOSHI; TAKUMI SHIGEO
        第11回ムギ類研究会, Dec. 2016
      • 合成パンコムギへのRNA-seq-based BSAの適用
        NISHIJIMA RYO; SAKAGUCHI KOHEI; YOSHIDA KENTARO; SATO KAZUHIRO; TAKUMI SHIGEO
        第11回ムギ類研究会, Dec. 2016
      • コムギの細胞死に関連するNAC及びMYB転写因子遺伝子の選抜
        HOSOKAWA SIORI; YOSHIDA KENTARO; TAKUMI SHIGEO
        第11回ムギ類研究会, Dec. 2016
      • Aegilops umbellulataゲノムワイド多型情報のマッピングへの利用
        OKADA MOEKO; YOSHIDA KENTARO; SATO KAZUHIRO; TAKUMI SHIGEO
        第11回ムギ類研究会, Dec. 2016
      • Gene expression profiles of intraspecific hybrids with growth abnormalities between tetraploid wheat and its wild wheat relative Aegilops umbellulata
        OKADA MOEKO; YOSHIDA KENTARO; TAKUMI SHIGEO
        日本育種学会, Sep. 2016
      • Genetic analysis of a novel locus controlling the cuticular wax production in wild wheat progenitor Aegilops tauschii
        NISHIJIMA RYO; TANAKA CHISA; YOSHIDA KENTARO; TAKUMI SHIGEO
        日本育種学会, Sep. 2016
      • コムギへのBreath Adapter Directional sequencing (BrAD-Seq)法の適用
        YOSHIDA KENTARO; MIZOO NAOKO; ICHIHASHI YASUNORI; UEMURA AIKO; TAKUMI SHIGEO
        日本育種学会, Sep. 2016
      • Genome-wide survey of polymorphisms in a wheat relative Aegilops umbellulata revealed by RNA-seq analysis
        岡田 萌子; YOSHIDA KENTARO; 西嶋 遼; 佐藤 和広; TAKUMI SHIGEO
        日本育種学会, Mar. 2016
      • Recruitment of the Aegilops tauschii scaffolds to the specific D-genome region of synthetic wheat hexaploid based on the RNA-seq data
        西嶋 遼; 坂口 晃平; YOSHIDA KENTARO; 水野 信之; 那須田 周平; 佐藤 和広; TAKUMI SHIGEO
        日本育種学会, Mar. 2016
      • Generation of transgenic Arabidopsis plants expressing wheat WRKY transcription factor genes associated with cell death
        久木 康伸; 大野 良子; YOSHIDA KENTARO; TAKUMI SHIGEO
        第10回ムギ類研究会, Dec. 2015
      • Genome-wide marker discovery in Aegilops tauschii using RNA-seq analysis
        西嶋 遼; YOSHIDA KENTARO; 佐藤 和広; TAKUMI SHIGEO
        第10回ムギ類研究会, Dec. 2015
      • Intraspecific variation in puroindollin genes in Aegilops umbellulata
        岡田 萌子; YOSHIDA KENTARO; TAKUMI SHIGEO
        第10回ムギ類研究会, Dec. 2015
      • 2倍体コムギ近縁種Aegilops umbellulataの二粒系コムギとの交雑親和性に関する種内変異の解析
        岡田 萌子; YOSHIDA KENTARO; TAKUMI SHIGEO
        第128回日本育種学会講演会, Sep. 2015
      • タルホコムギ10系統の幼苗葉のRNA-seqデータからのSNPの検出
        西嶋 遼; YOSHIDA KENTARO; 佐藤 和広; TAKUMI SHIGEO
        第128回日本育種学会講演会, Sep. 2015
      • コムギ種間雑種における生育不全で発現量が増加するWRKY転写因子の解析
        久木 康伸; 大野 良子; YOSHIDA KENTARO; TAKUMI SHIGEO
        第128回日本育種学会講演会, Sep. 2015
      • 二倍体野生コムギ2種の種間交雑により生じる異常種子のRNAseq解析
        高松 清史; YOSHIDA KENTAROU; 佐藤 和広; TAKUMI SHIGEO
        日本育種学会, Mar. 2015
      • 非病原力遺伝子PWT3の破壊によるライグラスいもち病菌のコムギへの病原性獲得
        Trinh Thi; Phuong Vy; 井上 喜博; YOSHIDA KENTAROU; 草場 基章; 寺内 良平; CHUMA IZUMI; TOSA YUKIO
        平成27年度日本植物病理学会大会, 2015, 日本植物病理学会
      • ペレニアルライグラスいもち病菌のコムギに対する非病原力遺伝子PWT3のコムギいもち病菌における変異とRwt3保有コムギ品種への適応
        井上 喜博; Trinh Thi; Phuong Vy; YOSHIDA KENTAROU; 寺内 良平; CHUMA IZUMI; TOSA YUKIO
        平成27年度日本植物病理学会大会, 2015, 日本植物病理学会
      • Chromosomal Localization Patterns of Avirulence Effector Genes in the Rice Blast Fungus Pyricularia oryzae and Related Species
        CHUMA IZUMI; 角 圭人; 土井 佑介; 村井 俊子; 草場 基章; YOSHIDA KENTAROU; 寺内 良平; NAKAYASHIKI HITOSHI; TOSA YUKIO
        IS-MPMI 2014 International Congress, Jul. 2014
      • エンバクいもち病菌のコムギに対する非病原力遺伝子PWT4のクローニングおよびその進化過程の解析
        井上 喜博; Trinh Thi; Phuong Vy; YOSHIDA KENTAROU; 三岡 周子; 麻野 北斗; 寺内 良平; CHUMA IZUMI; TOSA YUKIO
        平成26年度日本植物病理学会大会, Jun. 2014
      • エンバクいもち病菌のコムギに対する非病原力遺伝子PWT3のクローニングおよびその進化過程の解析
        Trinh Thi; Phuong Vy; 井上 喜博; YOSHIDA KENTAROU; 寺内 良平; CHUMA IZUMI; TOSA YUKIO
        平成26年度日本植物病理学会大会, Jun. 2014
      • Utilization of genome sequencing technology & rice genetic resources accelerates rice breeding.
        Yoshida, K; Takagi, H; Abe, A; Kosugi, S; Natsume, S; Kanzaki, H; Matsumura, H; Yoshida, K; Mitsuoka, C; Uemura, A; Utsushi, H; Yaegashi, H; Tamiru, M; Innan, H; Cano, L; Kamoun, S; Terauchi, R
        The Society for Experimental Biology Annual Main Meeting, Jul. 2013, Invited
      • Open Ash Dieback Project
        Yoshida, K
        Generic Model Organism Database Meeting, Apr. 2013
      • Genome evolution in an asexual lineage of Phytophthora infestans.
        Yoshida, K; Pais, M; Cano, L; Witek, K; Oliva, R; Vleeshouwers, V; Kamoun, S
        30th New Phytologsit Symposium, Sep. 2012
      • ゲノム情報から生物間相互作用に関与する遺伝子に迫る—植物・微生物間相互作用を例に
        吉田 健太郎
        第10回日本分類学会連合, Jan. 2011, Invited
      • イネいもち病菌エフェクターの宿主細胞内移行及び細胞死誘導に関与する領域の探索
        吉田 健太郎; 齋藤 宏昌; 藤澤 志津子; 伊東 明子; Sophien Kamoun; 寺内 良平
        日本植物病理学会, Oct. 2010
      • Two novel Magnaporthe oryzae effector genes show constrasting evolutionary patterns imposed by positive selection.
        Yoshida, K; Saitoh, H; Fujisawa, S; Kanzaki, H; Tosa, Y; Win, J; Kamoun, S; Terauchi, R
        XIV Congress on Molecular Plant-Microbe Interactions, Jul. 2009
      • ゲノム網羅的DNA多型解析によるイネいもち病菌の新規エフェクター遺伝子の単離
        吉田 健太郎; 齋藤 宏昌; 神崎 洋之; 宇津志 博恵; 土佐 幸雄; 上中 弘典; Joe Win; Sophien Kamoun; 寺内 良平
        日本植物病理学会, Mar. 2009
      • Large scale polymorphism analyses of Magnaporthe oryzae-secreted proteins identifies candidate effector genes under diversifying selection
        Yoshida, K; Saitoh, H; Utsushi, H; Tosa, Y; Win, J; Kamoun, S; Terauchi, R
        XIV Congress on Molecular Plant-Microbe Interactions, 2007
      • 植物の分子集団遺伝学—シロイヌナズナと野生イネの遺伝的多様性—
        吉田 健太郎
        日本育種学会 グループ研究集会Ⅳ, Apr. 2006, Invited
      • 野生イネ Oryza rufipogon とイネいもち病菌 Magnaporthe oryzae の相互作用に関わる遺伝子のDNA多型
        吉田 健太郎; 宮下 直彦
        日本遺伝学会, Oct. 2005
      • 野生イネ Oryza rufipogonのいもち病抵抗性遺伝子Pi-taといもち病菌Magnaporthe grisea の非病原性遺伝子AVR-PitaのDNA多型
        吉田 健太郎; 宮下 直彦
        日本遺伝学会, Sep. 2004
      • DNA polymorphism in the resistance gene Pi-ta of wild rice Oryza rufipogon and the avirulence gene AVR-Pita of rice blast fungus Magnaporthe oryzae
        吉田 健太郎
        国立遺伝学研究所研究会“生物多型・変異データの統合解析に向けて”, Jul. 2004, Invited
      • 野生イネ(Oryza rufipogon)の二つのアルコール脱水素酵素遺伝子座領域(Adh1とAdh2)における塩基多型
        吉田健太郎; 石井尊生; 宮下直彦
        日本育種学会, Apr. 2003
      • 野生イネ(Oryza rufipogon)の二つのアルコール脱水素酵素遺伝子座領域(Adh1とAdh2)における塩基多型
        吉田健太郎; 石井尊生; 宮下直彦
        日本遺伝学会, Apr. 2002
      • シロイヌナズナのACAULIS5遺伝子座領域におけるDNA変異の集団遺伝学的解析
        吉田健太郎; 神谷卓; 河邊昭; 宮下直彦
        日本遺伝学会, Sep. 2001

      Books and Other Publications

      • 育種へ応用する MutMap。 次世代シークエンス解析スタンダード〜NGSのポテンシャルを活かしきるWET&DRY
        阿部 陽; 高木 宏樹; 小杉 俊一; 夏目 俊; 八重樫 弘樹; 吉田 健太郎; 寺内 良平, Others
        羊土社, 2014, Not refereed
      • 全ゲノム情報と関連解析が解き明かすイネいもち病の感染機構。ゲノムが拓く生態学―遺伝子の網羅的解析で迫る植物の生きざま
        吉田 健太郎, Others
        文一総合出版, 2011, Not refereed
      • Association genetics reveals genes critical for Magnaporthe-rice interactions. In: Genome-enabled analysis of plant-pathogen interactions.
        Ryohei Terauchi; Kentaro Yoshida; Hiromasa Saitoh; Hideo Matsumura; Muluneh Tamiru Oli; Akira Abe; Jerwin Undan; Yudai Okuyama, Others
        APS press, 2011, Not refereed
      • Searching for effectors of Magnaporthe oryzae: a multi-faceted genomics approach. In: Advances in genetics, genomics and control of rice blast disease.
        Ryohei Terauchi; Joe Win; Sophien Kamoun; Hideo Matsumura; Hiromasa Saitoh; Hiroyuki Kanzaki; Kentaro Yoshida; Matt Shenton; Thomas Berberich; Shizuko Fujisawa; Akiko Ito; Yoshitaka Takano; Yukio Tosa, Others
        Springer, 2009, Not refereed
      • Use of TILLING for reverse and forward genetics of rice. In: Handbook of plant functional genomics.
        Sujay Rakshit; Hiroyuki Kanzaki; Hideo Matsumura; Arunita Rakshit; Takahiro Fujibe; Yudai Okuyama; Kentaro Yoshida; Muluneh Oli; Matt Shenton; Hiroe Utsushi; Chikako Mitsuoka; Akira Abe; Yutaka Kiuchi; Ryohei Terauchi, Others
        Wiley VCH, 2008, Not refereed

      External funds: Kakenhi

      • 冷凍保存可能な花粉を活用した新奇ゲノム編集技術の開発
        Grant-in-Aid for Challenging Research (Exploratory)
        Medium-sized Section 39:Agricultural and environmental biology and related fields
        Kyoto University
        吉田 健太郎
        From 09 Jul. 2021, To 31 Mar. 2024, Granted
        亜科間交雑;染色体脱落;ゲノム編集;倍加半数体;コムギ;パールミレット;形質転換;花粉;属間交雑
      • Comparative genomics in diverse hybrid dwarfisms inhibiting artificial synthesis of allopolyploid wheat
        Grant-in-Aid for Scientific Research (B)
        Basic Section 39010:Science in plant genetics and breeding-related
        Kobe University
        宅見 薫雄
        From 01 Apr. 2020, To 31 Mar. 2024, Granted
        育種学;ゲノム;生殖隔離;種間雑種;異質倍数性進化
      • Elucidation of molecular mechanisms of host plant-primary parasitic fungi-secondary parasitic fungi interaction at the single-cell level
        Grant-in-Aid for Scientific Research (B)
        Basic Section 39040:Plant protection science-related
        Kobe University
        Kentaro Yoshida
        From 01 Apr. 2018, To 31 Mar. 2021, Project Closed
        1細胞;RNAシークエンス;マイクロインジェクション;うどんこ病;オオムギ;コムギ;うどんこ病菌;エフェクター;病害抵抗性;RNA sequencing;レーザーインジェクション;1細胞
      • Elucidation of substance transfer between filamentous pathogens and host plants using RI imaging
        Grant-in-Aid for Challenging Research (Exploratory)
        Kobe University
        Kentaro Yoshida
        From 30 Jun. 2017, To 31 Mar. 2019, Project Closed
        コムギ;イネ;うどんこ病菌;いもち病菌;放射性同位体;RIイメージング;物質動態;うどんこ病;いもち病;植物ー微生物相互作用;コムギうどんこ病菌;イネいもち病菌
      • Species barriers in endosperm: key molecular mechanisms of epigenetic regulation
        Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
        Biological Sciences
        Yokohama City University
        Tetsu Kinoshita
        From 30 Jun. 2016, To 31 Mar. 2021, Project Closed
        胚乳;生殖的隔離;エピジェネティクス;イネ;エピゲノム;DNA脱メチル化;生殖隔離;ゲノムインプリンティング;ゲノムバランス;新種誕生;生殖;シロイヌナズナ;DNAメチル化;低分子RNA
      • Identification of avirulence genes
        Grant-in-Aid for Research Activity Start-up
        Kobe University
        Kentaro Yoshida
        From 29 Aug. 2014, To 31 Mar. 2016, Project Closed
        コムギ;うどんこ病菌;エフェクター;RNAシークエンシング;RNA シークエンシング;植物病理;RNAシーケンシング;病害抵抗性
      • Population genomics of plant host-pathogen interactions
        Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
        Biological Sciences
        Iwate Biotechnology Research Center
        Ryohei Terauchi
        From 01 Apr. 2011, To 31 Mar. 2016, Project Closed
        共進化;ゲノム解析;イネ;いもち病菌;植物;病原菌;自然選択;集団遺伝学;全ゲノム解析;シーケンス;耐病性
      • A study on translocation of the rice blast fungus Magnaporthe oryzae effectors into host cytoplasm
        Grant-in-Aid for Young Scientists (B)
        Iwate Biotechnology Research Center
        Kentaro YOSHIDA
        From 01 Apr. 2010, To 31 Mar. 2012, Project Closed
        植物・病原体相互作用;エフェクター
      • 絶対寄生および半活物寄生に対するCa2+流動の制御機構と生理的意義の解明
        Grant-in-Aid for Scientific Research (B)
        Basic Section 39040:Plant protection science-related
        Ehime University
        八丈野 孝
        From 01 Apr. 2022, To 31 Mar. 2025, Granted
        オオムギうどんこ病菌;カルシウムイオン;絶対寄生;半活物寄生;mlo
      • Advancing fundamental knowledge of NLR biology to enhance crop resistance against pathogens
        Fund for the Promotion of Joint International Research (International Leading Research )
        Biological Sciences
        Kyoto University
        寺内 良平
        From 17 Nov. 2023, To 31 Mar. 2030, Granted
        抵抗性タンパク質;植物病害防除;イネ;コムギ;ウリ類
      • 絶対寄生および半活物寄生に対するCa2+流動の制御機構と生理的意義の解明
        Grant-in-Aid for Scientific Research (B)
        Basic Section 39040:Plant protection science-related
        Ehime University
        八丈野 孝
        From 01 Apr. 2022, To 31 Mar. 2025, Granted
        オオムギうどんこ病菌;カルシウムスパイク;絶対寄生;mlo;カルシウムイオン;半活物寄生
      • ゲノム編集を用いたコムギの雑種生育不全原因遺伝子の同定
        Grant-in-Aid for JSPS Fellows
        Basic Section 39010:Science in plant genetics and breeding-related
        Kyoto University
        吉田 健太郎
        From 26 Jul. 2024, To 31 Mar. 2025, Adopted
      • ゲノム編集を用いたコムギの雑種生育不全原因遺伝子の同定
        Grant-in-Aid for JSPS Fellows
        Basic Section 39010:Science in plant genetics and breeding-related
        Kyoto University
        吉田 健太郎
        From 26 Jul. 2024, To 31 Mar. 2025, Granted

      External funds: others

      • サイバーフィジカルシステムを利用した作物強靭化による食料リスクゼロの実現
        農林水産省 ムーンショット型農林水産研究開発事業
        From Jan. 2021, To Mar. 2030
        大澤良
      • 民間事業者、地方公設試等の種苗開発を支える育種基盤技術の開発
        農林水産省 民間事業者等の種苗開発を支える「スマート育種システム」の開発
        From Sep. 2018, To Mar. 2023
        杉本和彦
      list
        Last Updated :2025/04/23

        Education

        Teaching subject(s)

        • From 01 Apr. 2024, To 31 Mar. 2025
          Interdisciplinary Sciences
          Y101, Fall, Institute for Liberal Arts and Sciences, 2
        • From 01 Apr. 2024, To 31 Mar. 2025
          Thesis
          5309, Year-long, Faculty of Agriculture, 10
        • From 01 Apr. 2024, To 31 Mar. 2025
          Seminar in Plant Genetics
          DF01, Spring, Graduate School of Agriculture, 1.5
        • From 01 Apr. 2024, To 31 Mar. 2025
          Seminar in Plant Genetics
          DF01, Fall, Graduate School of Agriculture, 1.5
        • From 01 Apr. 2024, To 31 Mar. 2025
          Research in Plant Genetics
          DG01, Spring, Graduate School of Agriculture, 3
        • From 01 Apr. 2024, To 31 Mar. 2025
          Research in Plant Genetics
          DG01, Fall, Graduate School of Agriculture, 3
        • From 01 Apr. 2024, To 31 Mar. 2025
          Advanced Genetics I
          DA01, Fall, Graduate School of Agriculture, 2
        • From 01 Apr. 2024, To 31 Mar. 2025
          Genetics I
          2103, Fall, Faculty of Agriculture, 2
        • From 01 Apr. 2024, To 31 Mar. 2025
          Seminar in Plant Resource Science
          5303, Year-long, Faculty of Agriculture, 2
        • From 01 Apr. 2024, To 31 Mar. 2025
          Genetics II
          5229, Spring, Faculty of Agriculture, 2
        • From 01 Apr. 2024, To 31 Mar. 2025
          Outline of Bioresource Science B
          5116, Spring, Faculty of Agriculture, 2
        • From 01 Apr. 2023, To 31 Mar. 2024
          Seminar in Plant Genetics1
          DB18, Year-long, Graduate School of Agriculture, 3
        • From 01 Apr. 2023, To 31 Mar. 2024
          Seminar in Plant Genetics2
          DB19, Year-long, Graduate School of Agriculture, 3
        • From 01 Apr. 2023, To 31 Mar. 2024
          Research in Plant Genetics1
          DC18, Year-long, Graduate School of Agriculture, 6
        • From 01 Apr. 2023, To 31 Mar. 2024
          Research in Plant Genetics2
          DC19, Year-long, Graduate School of Agriculture, 6
        • From 01 Apr. 2023, To 31 Mar. 2024
          Genetics I
          2103, Fall, Faculty of Agriculture, 2
        • From 01 Apr. 2023, To 31 Mar. 2024
          Seminar in Plant Resource Science
          5303, Year-long, Faculty of Agriculture, 2
        • From 01 Apr. 2023, To 31 Mar. 2024
          Genetics II
          5229, Spring, Faculty of Agriculture, 2
        • From 01 Apr. 2023, To 31 Mar. 2024
          Outline of Bioresource Science B
          5116, Spring, Faculty of Agriculture, 2
        • From 01 Apr. 2023, To 31 Mar. 2024
          Fundamental and Frontier Biology
          5701, Spring, Faculty of Agriculture, 2
        • From 01 Apr. 2023, To 31 Mar. 2024
          Advanced Genetics II
          DA02, Spring, Graduate School of Agriculture, 2
        • From 01 Apr. 2022, To 31 Mar. 2023
          Genetics I
          2103, Fall, Faculty of Agriculture, 2
        • From 01 Apr. 2022, To 31 Mar. 2023
          Seminar in Plant Resource Science
          5303, Year-long, Faculty of Agriculture, 2
        • From 01 Apr. 2022, To 31 Mar. 2023
          Research in Plant Genetics1
          DC18, Year-long, Graduate School of Agriculture, 6
        • From 01 Apr. 2022, To 31 Mar. 2023
          Advanced Genetics I
          DA01, Fall, Graduate School of Agriculture, 2
        • From 01 Apr. 2022, To 31 Mar. 2023
          Research in Plant Genetics2
          DC19, Year-long, Graduate School of Agriculture, 6
        • From 01 Apr. 2022, To 31 Mar. 2023
          Outline of Bioresource Science B
          5116, Spring, Faculty of Agriculture, 2
        • From 01 Apr. 2022, To 31 Mar. 2023
          Seminar in Plant Genetics1
          DB18, Year-long, Graduate School of Agriculture, 3
        • From 01 Apr. 2022, To 31 Mar. 2023
          Seminar in Plant Genetics2
          DB19, Year-long, Graduate School of Agriculture, 3
        • From 01 Apr. 2022, To 31 Mar. 2023
          Genetics II
          5229, Spring, Faculty of Agriculture, 2
        • From Apr. 2021, To Mar. 2022
          Research in Plant Genetics1
          Year-long, 農学研究科
        • From Apr. 2021, To Mar. 2022
          Research in Plant Genetics2
          Year-long, 農学研究科
        • From Apr. 2021, To Mar. 2022
          Seminar in Plant Genetics1
          Year-long, 農学研究科
        • From Apr. 2021, To Mar. 2022
          Seminar in Plant Genetics2
          Year-long, 農学研究科
        • From Apr. 2021, To Mar. 2022
          Seminar in Plant Resource Science
          Year-long, 農学部
        • From Apr. 2021, To Mar. 2022
          Outline of Bioresource Science B
          Spring, 農学部
        • From Apr. 2021, To Mar. 2022
          Genetics I
          Spring, 農学部
        • From Apr. 2021, To Mar. 2022
          Genetics II
          Fall, 農学部
        • From Apr. 2021, To Mar. 2022
          Advanced Genetics II
          Spring, 農学研究科

        Participation in PhD Defense

        • シロアリの資源分配機構に関する社会生理学的研究
          KONISHI TAKAO, Graduate School of Agriculture, Sub-chief Examiner
          25 Mar. 2024
        • Studies on the cell-to-cell movement mechanism of red clover necrotic mosaic virus via analysis of intracellular dynamics of double-stranded RNA and movement protein
          TAKATA SHOTA, Graduate School of Agriculture, Sub-chief Examiner
          25 Mar. 2024
        • Studies on the cell-to-cell movement mechanism of red clover necrotic mosaic virus via analysis of intracellular dynamics of double-stranded RNA and movement protein
          TAKATA SHOTA, Graduate School of Agriculture, Sub-chief Examiner
          25 Mar. 2024
        • Development of a method for insect genome editing by adult injection
          SHIRAI YU, Graduate School of Agriculture, Sub-chief Examiner
          25 Mar. 2024
        • Studies on the hybrid origin of Guinea yam and its evolution 
          SUGIHARA YU, Graduate School of Agriculture, Sub-chief Examiner
          23 Mar. 2023
        • Studies on host specificity of the cucurbit anthracnose pathogen Colletotrichum orbiculare via comparative analyses with closely related pathogens 
          OGAWA TAIKI, Graduate School of Agriculture, Sub-chief Examiner
          23 Mar. 2023
        • Genetic dissection of resistance of two rice cultivars against blast fungus Magnaporthe oryzae
          BASAVARAJ KOVI, Graduate School of Agriculture, Sub-chief Examiner
          23 Mar. 2023
        • Studies on the plant immune system involving the PAMP receptor RLP23 in Arabidopsis thaliana
          ONO ERIKA, Graduate School of Agriculture, Sub-chief Examiner
          23 Mar. 2023
        • Studies on virulence-related effectors and transcription factors preferentially expressed at the pre-invasion stage in Colletotrichum orbiculare
          ZHANG RU, Graduate School of Agriculture, Sub-chief Examiner
          26 Sep. 2022
        • 絶対単為生殖種キイロヒメアリの繁殖生態と社会構造
          IDOGAWA NAOTO, Graduate School of Agriculture, Sub-chief Examiner
          24 Nov. 2022
        • Studies on utilization of tetraploid wheat (Triticum turgidum L.) as genetic resources and improvement of breeding efficiency by novel techniques for detecting nucleotide polymorphisms
          NISHIMURA KAZUSA, Graduate School of Agriculture, Sub-chief Examiner
          24 Nov. 2022
        • Studies on fungal secreted proteins that activate plant immunity in Colletotrichum species
          CHEN JINLIAN, Graduate School of Agriculture, Sub-chief Examiner
          24 Sep. 2021

        Student achievements: Awards

        • 優秀ポスター発表賞
          河村凌, ムギ類研究会, 24 Dec. 2023

        Student achievements: Papers

        • Discrepancy of flowering time between genetically close sublineages of Aegilops umbellulata Zhuk.
          In Son, Nozomi Kasazumi, Moeko Okada, Shigeo Takumi, Kentaro Yoshida
          28 Mar. 2024, Scientific Reports, 14, 7437, Peer-reviewed
        • Identification of the causal mutation in early heading mutant of bread wheat (Triticum aestivum L.) using MutMap approach.
          Shoya Komura, Kentaro Yoshida, Hironobu Jinno, Youko Oono, Hirokazu Handa, Shigeo Takumi, Fuminori Kobayashi
          21 May 2024, Molecular Breeding, 44, 41, Peer-reviewed
        • Genome sequencing-based coverage analyses facilitate high-resolution detection of deletions linked to phenotypes of gamma-irradiated wheat mutants
          Shoya Komura, Hironobu Jinno, Tatsuya Sonoda, Youko Oono, Hirokazu Handa, Shigeo Takumi, Kentaro Yoshida, Fuminori Kobayashi
          09 Feb. 2022, Corresponding author, BMC Genomics, 23, 111, Peer-reviewed, English, Scientific journal, False

        Student achievements: Presentations

        • Analysis of the genomic region associated with pre-harvest sprouting tolerance identified in gamma-ray irradiated wheat mutant
          Shoya Komura, Hironobu Jinno, Tatsuya Sonoda, Youko Oono, Hirokazu Handa, Fuminori, Kobayashi, Kentaro Yoshida
          15th International Symposium on Pre-Harvest Sprouting in Cereals, 05 Oct. 2023, Not invited, English, Poster presentation
        • コムギ野生近縁種 Aegilops umbellulata Zhuk. におけるうどんこ病菌侵入後抵抗性の原因遺伝子座の同定
          河村 凌, 岡田 萌子, 古村 翔也, 清水 健太郎, 西村 和紗, 井上 喜博, 吉田 健太郎
          日本育種学会第144回講演会, 16 Sep. 2023, Not invited, Oral presentation
        • パンコムギガンマ線照射集団由来の早生系統の原因遺伝子領域の同定
          古村 翔也, 小林 史典, 大野 陽子, 半田 裕一, 吉田 健太郎
          日本育種学会第144回講演会, 16 Sep. 2023, Not invited, Oral presentation
        • パールミレット完熟種子を用いたアグロバクテリウム形質転換法の構築
          青木 亮磨, 石井 孝佳, 吉田健太郎
          日本育種学会第144回講演会, 17 Sep. 2023, Not invited, Oral presentation
        • AuAuBBAmAm合成六倍体コムギとパンコムギの間でみられる雑種ネクローシス原因遺伝子座領域の同定
          與田 悠人, 野口 微風子, 古村 翔也, 村田 和樹, 岡田 萌子, 水野 信之, 小林 史典, 西村 和紗, 井上 喜博, 那須田 周平, 松岡 由浩, 吉田 健太郎
          日本育種学会第144回講演会, 17 Sep. 2023, Not invited, Oral presentation
        • Pairing homoeologous 2 欠失変異体を利用したパ ンコムギへの異種染色体断片導入
          田渕 雅啓, 岡田 萌子, 道川 麻美, 井上 喜博, 西村 和紗, 水野 信之, 清水 健太郎, 小林 史典, 宅見 薫雄, 吉田 健太郎
          日本育種学会第144回講演会, 17 Sep. 2023, Not invited, Oral presentation
        • AABBUU 合成倍数体と pairing homoeologous 2 欠失変異体の交雑後代における塩ストレス耐性の評価
          田渕雅啓, 古村翔也, 岡田萌子, 道川麻美, 井上喜博, 西村和紗, 吉田健太郎
          第18回ムギ類研究会, 23 Dec. 2023, Not invited, Poster presentation
        • Abnormal chromosome behaviours in meiosis and phenotypic variations in the octaploid hybrids of Triticum turgidum and Aegilops columnaris
          Adam Izzuddin, Shigeo Takumi, Kentaro Yoshida
          第18回ムギ類研究会, 23 Dec. 2023, Not invited, Poster presentation
        • パールミレット完熟種子を用いたアグロバクテリウム形質転換法の開発
          青木亮磨, 石井孝佳, 吉田健太郎
          第18回ムギ類研究会, 23 Dec. 2023, Not invited, Poster presentation
        • パンコムギ品種Fielderおける重複遺伝子の同時ゲノム編集の試み
          與田悠人, 古村翔也, 加星光子, 安倍史高, 井上喜博, 吉田健太郎
          第18回ムギ類研究会, 23 Dec. 2023, Not invited, Poster presentation
        • アグロバクテリウム法によるAegilops umbellulata Zhuk.の形質転換法の確立
          河村凌, 溝尾直子, 古村翔也, 加星光子, 安倍史高, 井上喜博, 吉田健太郎
          第18回ムギ類研究会, 23 Dec. 2023, Not invited, Poster presentation
        • tRNA プロセシングを利用したコムギの多重ゲノム編集個体の作製
          古村翔也, 安倍史高, 加星光子, 吉田健太郎
          第18回ムギ類研究会, 23 Dec. 2023, Not invited, Poster presentation
        • コムギにおけるtRNA -gRNA arrayを利用した多重ゲノム編集個体の作製
          古村翔也, 安倍史高, 加星光子, 吉田健太郎
          日本育種学会第145回講演会, 17 Mar. 2024, Not invited, Poster presentation
        • Confirmation of alien chromosome fragments with genomic in situ hybridization
          田渕雅啓・吉田健太郎・井上喜博
          第17回ムギ類研究会, From 16 Dec. 2022, To 17 Dec. 2022, Not invited, Japanese, Poster presentation
        • Genetic analysis of post-invasion resistance in Aegilops umbellulata Zhuk. against powdery mildew
          河村凌・岡田萌子・古村翔也・清水健太郎・井上喜博・吉田健太郎
          第17回ムギ類研究会, From 16 Dec. 2022, To 17 Dec. 2022, Not invited, Japanese, Poster presentation
        • Constructing transformation method of pearl millet targeting wheat breeding
          青木亮磨・石井孝佳・吉田健太郎
          第17回ムギ類研究会, From 16 Dec. 2022, To 17 Dec. 2022, Not invited, Japanese, Poster presentation
        • 異質倍数体作物における遺伝子量効果を利用した形質多様性の創出
          古村翔也, 吉田健太郎
          第3回日本遺伝学会春の分科会, 27 Mar. 2023, From 27 Mar. 2023, To 27 Mar. 2023, Not invited, Japanese, Poster presentation
        • γ線照射により作出された パンコムギ短稈変異体の 表現型原因変異の同定
          古村翔也, 蝶野真喜子, 松中仁, 中村和弘, 石川吾郎, 小林史典, 吉田健太郎
          第143回日本育種学会, From 17 Mar. 2023, To 18 Mar. 2023, Not invited, Japanese, Oral presentation
        • 全ゲノムシーケンスを用いたパンコムギ突然変異体からの原因突然変異の同定
          古村翔也, 小林史典, 神野裕信, 其田達也, 蝶野真喜子, 大野陽子, 半田裕一, 吉田健太郎
          第17回ムギ類研究会, From 16 Dec. 2022, To 17 Dec. 2022, Invited, Japanese, Invited oral presentation
        • The rapid identification of genomic regions responsible for gamma-irradiated wheat mutants by whole-genome sequencing
          Shoya Komura, Hironobu Jinno, Tatsuya Sonoda, Youko Oono, Hirokazu Handa, Fuminori Kobayashi, Kentaro Yoshida
          2nd International wheat congress, From 11 Sep. 2022, To 15 Sep. 2022, Not invited, English, Poster presentation
        • Towards identification of causative genes for hybrid incompatibilities between tetraploid wheat and Aegilops tauschii Cosson
          H. Matsuoka, S. Yoshimura, R. Morisaki, S. Takumi, A. Toyoda, H. Tanaka, T. Ito, A. Himmelbach, N. Stein, S. Sakuma, Y. Matsuoka, K. Yoshida
          第16回ムギ類研究会, 25 Dec. 2022, From 25 Dec. 2022, To 15 Dec. 2022, Not invited, Japanese, Poster presentation
        • Effects of light/dark cycle on the periodic secondary appressoria formation in Blumeria graminis
          Y. Kawami, K. Yoshida
          第16回ムギ類研究会, 25 Dec. 2021, From 25 Dec. 2021, To 25 Dec. 2021, Not invited, Japanese, Poster presentation
        • Genome analysis of the wheat double mutant produced by cross between two early flowering mutants
          S. Komura, F. Kobayashi, Y. Oono, Y. Handa, K. Yoshida
          第16回ムギ類研究会, 25 Dec. 2021, From 25 Dec. 2021, To 25 Dec. 2021, Not invited, Japanese, Poster presentation
        • The rapid identification of genomic regions responsible for gamma-irradiated wheat mutants by whole-genome sequencing
          Shoya Komura, Hironobu Jinno, Tatsuya Sonoda, Yoko Oono, Hirokazu Handa, Fuminori Kobayashi, Kentaro Yoshida
          2nd International wheat congress, 12 Sep. 2022, From 12 Sep. 2022, To 15 Sep. 2022, Not invited, English, Poster presentation
        • Phylogeographic study of wild wheat relative Aegilops umbellulata Zhuk.
          I. Son, N. Kasazumi, M. Okada, Y. Matsuoka, K. Yoshida
          日本遺伝学会 第94回大会, 15 Sep. 2022, From 14 Sep. 2022, To 17 Sep. 2022, Not invited, Japanese, Poster presentation

        Part-time lecturer

        • From 01 Oct. 2022, To 09 Feb. 2023
          集団遺伝学
          後期, 国立大学法人神戸大学, 農学部
        list
          Last Updated :2025/04/23

          Administration

          School management (title, position)

          • From 01 Apr. 2024, To 31 Mar. 2025
            国際高等教育院 企画評価専門委員会 生物学部会
          • From 01 Apr. 2023, To 31 Mar. 2024
            国際高等教育院 企画評価専門委員会 生物学部会 委員
          • From 01 Apr. 2022, To 31 Mar. 2023
            国際高等教育院 企画評価専門委員会 生物学部会 委員

          Faculty management (title, position)

          • From 01 Apr. 2025, To 31 Mar. 2027
            将来構想検討委員会 委員
          • From 01 Apr. 2024, To 31 Mar. 2025
            資源生物科学科長
          • From 01 Apr. 2024, To 31 Mar. 2025
            評価委員会 委員
          • From 01 Jul. 2022, To 30 Jun. 2024
            比較農業論講座運営協議員会 協議委員 
          • From 01 Apr. 2023, To 31 Mar. 2025
            国際交流委員会 委員
          • From 01 Apr. 2022, To 31 Mar. 2023
            産学共同講座「ゲノム編集育種講座」運営委員会 委員
          • From 01 Apr. 2022, To 31 Mar. 2023
            比較農業論講座運営委員会 委員
          • From 01 Apr. 2022, To 31 Mar. 2023
            将来計画WG学生実験班  班長・生物先端科学コース長
          • From 01 Apr. 2022, To 31 Mar. 2024
            制度・組織等検討委員会 委員

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