Basic Information

Affiliated programs (koza)

• Graduate School of Pharmaceutical Sciences, 創発医薬科学専攻 創発医薬科学講座, 教授
• Graduate School of Science, 生物科学専攻 生体分子情報学講座, 教授

Academic Degree

• Master of Science(Kyoto University)
• Doctor of Science(Kyoto University)

Language of Instruction

• English
• French

ID,URL

• J-Global ID

  201301080969730019

• Researcher number

  70291432

• External link

  https://cls.kuicr.kyoto-u.ac.jp/

Website(s) (URL(s))

• https://cls.kuicr.kyoto-u.ac.jp/

researchmap URL

• https://researchmap.jp/hiroyuki.ogata

Research

Research Topics, Overview of the research

• Research Topics

  Viral genomics, Microbial genomics, Genome evolution, Metagenomics, Bioinformatics, Microbial ecology

• Overview of the research

  My principal research interest is to understand the diversity and spatio-temporal distributions of viruses and microbes in the light of their evolution and ecology. I am currently focusing on the evolution and ecology of giant viruses and their hosts.

Research Areas

• Life sciences, Marine/Aquatic life sciences

Papers

• Sputnik virophage disrupts the transcriptional regulation of its host giant virus

  Jingjie Chen; Hiroyuki Ogata; Hiroyuki HIKIDA

  bioRxiv, 09 Aug. 2024

  
• Taxon-specific contributions of microeukaryotes to biological carbon pump in the Oyashio region

  Qingwei Yang; Yanhui Yang; Jun Xia; Hideki Fukuda; Yusuke Okazaki; Toshi Nagata; Hiroyuki Ogata; Hisashi Endo

  ISME Communications, 04 Nov. 2024

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• Spatiotemporal dynamics of giant viruses within a deep freshwater lake reveal a distinct dark-water community

  Liwen Zhang; Lingjie Meng; Yue Fang; Hiroyuki Ogata; Yusuke Okazaki

  The ISME Journal, 23 Sep. 2024, Peer-reviewed

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• Gene transfer among viruses substantially contributes to gene gain of giant viruses.

  Junyi Wu; Lingjie Meng; Morgan Gaïa; Hiroyuki Hikida; Yusuke Okazaki; Hisashi Endo; Hiroyuki Ogata

  Molecular biology and evolution, 02 Aug. 2024, Peer-reviewed, Last author, Corresponding author

  
• Complex Genomes of Early Nucleocytoviruses Revealed by Ancient Origins of Viral Aminoacyl-tRNA Synthetases.

  Soichiro Kijima; Hiroyuki Hikida; Tom O Delmont; Morgan Gaïa; Hiroyuki Ogata

  Molecular biology and evolution, 02 Aug. 2024, Peer-reviewed, Last author, Corresponding author

  
• Eukaryotic genomic data uncover an extensive host range of mirusviruses.

  Hongda Zhao; Lingjie Meng; Hiroyuki Hikida; Hiroyuki Ogata

  Current biology : CB, 17 Jun. 2024, Peer-reviewed, Corresponding author

  
• DiGAlign: Versatile and Interactive Visualization of Sequence Alignment for Comparative Genomics

  Yosuke Nishimura; Kohei Yamada; Yusuke Okazaki; Hiroyuki Ogata

  Microbes and Environments, 24 Mar. 2024, Peer-reviewed, Corresponding author

  
• Global Distribution and Diversity of Marine Parmales

  Hiroki Ban; Hisashi Endo; Akira Kuwata; Hiroyuki Ogata

  Microbes and Environments, 23 Mar. 2024, Peer-reviewed, Corresponding author

  
• A 1.5-Mb continuous endogenous viral region in the arbuscular mycorrhizal fungus Rhizophagus irregularis

  Hongda Zhao; Ruixuan Zhang; Junyi Wu; Lingjie Meng; Yusuke Okazaki; Hiroyuki Hikida; Hiroyuki Ogata

  Virus Evolution, 31 Oct. 2023, Peer-reviewed, Last author, Corresponding author

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• Genomic adaptation of giant viruses in polar oceans

  Meng L; Delmont T.O; Gaïa M; Pelletier E; Fernandez-Guerra A; Chaffron S; Neches R.Y; Wu J; Kaneko H; Endo H; Ogata H

  Nature Communications, 12 Oct. 2023, Peer-reviewed, Last author, Corresponding author

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• Predicting global distributions of eukaryotic plankton communities from satellite data

  Hiroto Kaneko; Hisashi Endo; Nicolas Henry; Cédric Berney; Frédéric Mahé; Julie Poulain; Karine Labadie; Odette Beluche; Roy El Hourany; Silvia G. Acinas; Marcel Babin; Peer Bork; Chris Bowler; Guy Cochrane; Colomban de Vargas; Gabriel Gorsky; Lionel Guidi; Nigel Grimsley; Pascal Hingamp; Daniele Iudicone; Olivier Jaillon; Stefanie Kandels; Eric Karsenti; Fabrice Not; Nicole Poulton; Stéphane Pesant; Christian Sardet; Sabrina Speich; Lars Stemmann; Matthew B. Sullivan; Shinichi Sunagawa; Samuel Chaffron; Patrick Wincker; Ryosuke Nakamura; Lee Karp-Boss; Emmanuel Boss; Chris Bowler; Colomban de Vargas; Kentaro Tomii; Hiroyuki Ogata

  ISME Communications, 22 Sep. 2023, Peer-reviewed, Last author, Corresponding author

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• A rapid genome-wide analysis of isolated giant viruses using MinION sequencing.

  Hiroyuki Hikida; Yusuke Okazaki; Ruixuan Zhang; Thi Tuyen Nguyen; Hiroyuki Ogata

  Environmental microbiology, 05 Aug. 2023, Peer-reviewed, Last author

  
• Genome analysis of Parmales, a sister group of diatoms, reveals the evolutionary specialization of diatoms from phago-mixotrophs to photoautotrophs

  Hiroki Ban; Shinya Sato; Shinya Yoshikawa; Kazumasa Yamada; Yoji Nakamura; Mutsuo Ichinomiya; Naoki Sato; Romain Blanc-Mathieu; Hisashi Endo; Akira Kuwata; Hiroyuki Ogata

  COMMUNICATIONS BIOLOGY, 07 Jul. 2023, Peer-reviewed, Last author, Corresponding author

  
• Mirusviruses link herpesviruses to giant viruses

  Gaïa M; Meng L; Pelletier E; Forterre P; Vanni C; Fernandez-Guerra A; Jaillon O; Wincker P; Ogata H; Krupovic M; Delmont, T.O

  Nature, Apr. 2023, Peer-reviewed

  
• “Mamonoviridae”, a proposed new family of the phylum Nucleocytoviricota

  Zhang, Ruixuan; Takemura, Masaharu; Murata, Kazuyoshi; Ogata, Hiroyuki

  Archives of Virology, 05 Feb. 2023, Peer-reviewed, Last author

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• Prevalence of Viral Frequency-Dependent Infection in Coastal Marine Prokaryotes Revealed Using Monthly Time Series Virome Analysis.

  Kento Tominaga; Nana Ogawa-Haruki; Yosuke Nishimura; Hiroyasu Watai; Keigo Yamamoto; Hiroyuki Ogata; Takashi Yoshida

  mSystems, 01 Feb. 2023, Peer-reviewed

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• Ocean-wide comparisons of mesopelagic planktonic community structures.

  Rigonato J; Budinich M; Murillo A.A; Brandao M.C; Pierella Karlusich J.J; Soviadan Y.D; Gregory A.C; Endo H; Kokoszka F; Vik D; Henry H; Fremont P; Labadie K; Zayed A.A; Dimier C; Picheral M; Searson S; Poulain J; Kandels S; Pesant S; Karsenti E; The Tara Oceans coordinators; Bork P; Bowler C; de Vargas C; Eveillard D; Gehlen M; Iudicone D; Lombard F; Ogata H; Stemmann L; Sullivan M.B; Sunagawa S; Wincker P; Chaffron S; Jaillon O

  ISME Communications, 2023, Peer-reviewed

  
• Create a new family (“Mamonoviridae”), a genus (“Medusavirus”), and two species (“Medusavirus medusae” and “Medusavirus sthenus”) in the phylum Nucleocytoviricota.

  Zhang R; Takemura M; Murata K; Ogata H

  ICTV Taxonomic Proposal, 2023, Peer-reviewed, Last author

  
• A Fast and Easy Method to Co-extract DNA and RNA from an Environmental Microbial Sample

  Yusuke Okazaki; Tuyen Thi Nguyen; Arisa Nishihara; Hisashi Endo; Hiroyuki Ogata; Shin-ichi Nakano; Hideyuki Tamaki

  Microbes and Environments, 2023, Peer-reviewed

  
• MSNet-4mC: Learning effective multi-scale representations for identifying DNA N4-methylcytosine sites

  Chunting Liu; Jiangning Song; Hiroyuki Ogata; Tatsuya Akutsu

  Bioinformatics, 07 Oct. 2022, Peer-reviewed

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• Global observation of plankton communities from space

  Hiroto Kaneko; Hisashi Endo; Nicolas Henry; Cédric Berney; Frédéric Mahé; Julie Poulain; Karine Labadie; odette beluche; Roy El Hourany; Samuel Chaffron; Patrick Wincker; Ryosuke Nakamura; Lee Karp-Boss; Emmanuel Boss; Chris Bowler; Colomban de Vargas; Kentaro Tomii; Hiroyuki Ogata; Tara Oceans Coordinators

  26 Sep. 2022

  
• Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems

  Daniel J. Richter; Romain Watteaux; Thomas Vannier; Jade Leconte; Paul Frémont; Gabriel Reygondeau; Nicolas Maillet; Nicolas Henry; Gaëtan Benoit; Ophélie Da Silva; Tom O. Delmont; Antonio Fernàndez-Guerra; Samir Suweis; Romain Narci; Cédric Berney; Damien Eveillard; Frederick Gavory; Lionel Guidi; Karine Labadie; Eric Mahieu; Julie Poulain; Sarah Romac; Simon Roux; Céline Dimier; Stefanie Kandels; Marc Picheral; Sarah Searson; Stéphane Pesant; Jean-Marc Aury; Jennifer R. Brum; Claire Lemaitre; Eric Pelletier; Peer Bork; Shinichi Sunagawa; Fabien Lombard; Lee Karp-Boss; Chris Bowler; Matthew B. Sullivan; Eric Karsenti; Mahendra Mariadassou; Ian Probert; Pierre Peterlongo; Patrick Wincker; Colomban de Vargas; Maurizio Ribera d’Alcalà; Daniele Iudicone; Olivier Jaillon

  03 Aug. 2022, Peer-reviewed

  
• The Ocean Gene Atlas v2.0: online exploration of the biogeography and phylogeny of plankton genes

  Caroline Vernette; Julien Lecubin; Pablo Sánchez; Silvia G Acinas; Marcel Babin; Peer Bork; Emmanuel Boss; Chris Bowler; Guy Cochrane; Colomban de Vargas; Gabriel Gorsky; Lionel Guidi; Nigel Grimsley; Pascal Hingamp1; Daniele Iudicone; Olivier Jaillon; Stefanie Kandels-Lewis; Lee Karp-Boss; Eric Karsenti; Fabrice Not; Hiroyuki Ogata; Nicole Poulton; Stéphane Pesant; Christian Sardet; Sabrina Speich; Lars Stemmann; Matthew B Sullivan; Shinichi Sunagawa; Patrick Wincker; Shinichi Sunagawa; Tom O Delmont; Silvia G Acinas; Eric Pelletier; Pascal Hingamp; Magali Lescot

  Nucleic Acids Research, 05 Jul. 2022, Peer-reviewed

  
• Diversity and ecological footprint of Global Ocean RNA viruses

  Guillermo Dominguez-Huerta; Ahmed A. Zayed; James M. Wainaina; Jiarong Guo; Funing Tian; Akbar Adjie Pratama; Benjamin Bolduc; Mohamed Mohssen; Olivier Zablocki; Eric Pelletier; Erwan Delage; Adriana Alberti; Jean-Marc Aury; Quentin Carradec; Corinne da Silva; Karine Labadie; Julie Poulain; Chris Bowler; Damien Eveillard; Lionel Guidi; Eric Karsenti; Jens H. Kuhn; Hiroyuki Ogata; Patrick Wincker; Alexander Culley; Samuel Chaffron; Matthew B. Sullivan

  Science, 10 Jun. 2022, Peer-reviewed

  
• Tight association between microbial eukaryote and giant virus communities in the Arctic Ocean

  Jun Xia; Sohiko Kameyama; Florian Prodinger; Takashi Yoshida; Kyoung‐Ho Cho; Jinyoung Jung; Sung‐Ho Kang; Eun‐Jin Yang; Hiroyuki Ogata; Hisashi Endo

  Limnology and Oceanography, Jun. 2022, Peer-reviewed

  
• Functional Differentiation among the Arabidopsis Phosphatidylinositol 4-Phosphate 5-Kinase Genes PIP5K1, PIP5K2 and PIP5K3

  Machiko Watari; Mariko Kato; Romain Blanc-Mathieu; Tomohiko Tsuge; Hiroyuki Ogata; Takashi Aoyama

  Plant and Cell Physiology, 16 May 2022, Peer-reviewed

  
• Functional repertoire convergence of distantly related eukaryotic plankton lineages abundant in the sunlit ocean

  Tom O. Delmont; Morgan Gaia; Damien D. Hinsinger; Paul Frémont; Chiara Vanni; Antonio Fernandez-Guerra; A. Murat Eren; Artem Kourlaiev; Leo d'Agata; Quentin Clayssen; Emilie Villar; Karine Labadie; Corinne Cruaud; Julie Poulain; Corinne Da Silva; Marc Wessner; Benjamin Noel; Jean-Marc Aury; Colomban de Vargas; Chris Bowler; Eric Karsenti; Eric Pelletier; Patrick Wincker; Olivier Jaillon; Shinichi Sunagawa; Silvia G. Acinas; Peer Bork; Eric Karsenti; Chris Bowler; Christian Sardet; Lars Stemmann; Colomban de Vargas; Patrick Wincker; Magali Lescot; Marcel Babin; Gabriel Gorsky; Nigel Grimsley; Lionel Guidi; Pascal Hingamp; Olivier Jaillon; Stefanie Kandels; Daniele Iudicone; Hiroyuki Ogata; Stéphane Pesant; Matthew B. Sullivan; Fabrice Not; Karp-Boss Lee; Emmanuel Boss; Guy Cochrane; Michael Follows; Nicole Poulton; Jeroen Raes; Mike Sieracki; Sabrina Speich

  Cell Genomics, 11 May 2022, Peer-reviewed

  
• Cryptic and abundant marine viruses at the evolutionary origins of Earth’s RNA virome

  Ahmed A. Zayed; James M. Wainaina; Guillermo Dominguez-Huerta; Eric Pelletier; Jiarong Guo; Mohamed Mohssen; Funing Tian; Akbar Adjie Pratama; Benjamin Bolduc; Olivier Zablocki; Dylan Cronin; Lindsey Solden; Erwan Delage; Adriana Alberti; Jean-Marc Aury; Quentin Carradec; Corinne da Silva; Karine Labadie; Julie Poulain; Hans-Joachim Ruscheweyh; Guillem Salazar; Elan Shatoff; Ralf Bundschuh; Kurt Fredrick; Laura S. Kubatko; Samuel Chaffron; Alexander I. Culley; Shinichi Sunagawa; Jens H. Kuhn; Patrick Wincker; Matthew B. Sullivan; Silvia G. Acinas; Marcel Babin; Peer Bork; Emmanuel Boss; Chris Bowler; Guy Cochrane; Colomban de Vargas; Gabriel Gorsky; Lionel Guidi; Nigel Grimsley; Pascal Hingamp; Daniele Iudicone; Olivier Jaillon; Stefanie Kandels; Lee Karp-Boss; Eric Karsenti; Fabrice Not; Hiroyuki Ogata; Nicole Poulton; Stéphane Pesant; Christian Sardet; Sabrinia Speich; Lars Stemmann; Matthew B. Sullivan; Shinichi Sungawa; Patrick Wincker

  Science, 08 Apr. 2022, Peer-reviewed

  
• Integrative analysis of gut microbiome and host transcriptomes reveals associations between treatment outcomes and immunotherapy‐induced colitis

  Toshiharu Sakurai; Marco A De Velasco; Kazuko Sakai; Tomoyuki Nagai; Hiroki Nishiyama; Kentaro Hashimoto; Hirotsugu Uemura; Hisato Kawakami; Kazuhiko Nakagawa; Hiroyuki Ogata; Kazuto Nishio; Masatoshi Kudo

  Molecular Oncology, 04 Apr. 2022, Peer-reviewed

  
• Giant Viruses Encode Actin-Related Proteins

  Violette Da Cunha; Morgan Gaia; Hiroyuki Ogata; Olivier Jaillon; Tom O Delmont; Patrick Forterre

  Molecular Biology and Evolution, 03 Feb. 2022, Peer-reviewed

  
• Year-round dynamics of amplicon sequence variant communities differ among eukaryotes, Imitervirales and prokaryotes in a coastal ecosystem.

  Florian Prodinger; Hisashi Endo; Yoshihito Takano; Yanze Li; Kento Tominaga; Tatsuhiro Isozaki; Romain Blanc-Mathieu; Yasuhiro Gotoh; Tetsuya Hayashi; Etsunori Taniguchi; Keizo Nagasaki; Takashi Yoshida; Hiroyuki Ogata

  FEMS microbiology ecology, 08 Jan. 2022, Peer-reviewed, Last author, Corresponding author

  
• Compendium of 530 metagenome-assembled bacterial and archaeal genomes from the polar Arctic Ocean

  Marta Royo-Llonch; Pablo Sánchez; Clara Ruiz-González; Guillem Salazar; Carlos Pedrós-Alió; Marta Sebastián; Karine Labadie; Lucas Paoli; Federico M. Ibarbalz; Lucie Zinger; Benjamin Churcheward; Marcel Babin; Peer Bork; Emmanuel Boss; Guy Cochrane; Colomban de Vargas; Gabriel Gorsky; Nigel Grimsley; Lionel Guidi; Pascal Hingamp; Daniele Iudicone; Olivier Jaillon; Stefanie Kandels; Fabrice Not; Hiroyuki Ogata; Stéphane Pesant; Nicole Poulton; Jeroen Raes; Christian Sardet; Sabrina Speich; Lars Setmmann; Matthew B. Sullivan; Samuel Chaffron; Damien Eveillard; Eric Karsenti; Shinichi Sunagawa; Patrick Wincker; Lee Karp-Boss; Chris Bowler; Silvia G. Acinas

  Nature Microbiology, Dec. 2021, Peer-reviewed

  
• RNA Sequencing of Medusavirus Suggests Remodeling of the Host Nuclear Environment at an Early Infection Stage

  Ruixuan Zhang; Hisashi Endo; Masaharu Takemura; Hiroyuki Ogata

  Microbiology Spectrum, 31 Oct. 2021, Last author, Corresponding author

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• Adaptive evolution of viruses infecting marine microalgae (haptophytes), from acute infections to stable coexistence

  Ruth‐Anne Sandaa; Marius R. Saltvedt; Håkon Dahle; Haina Wang; Selina Våge; Romain Blanc‐Mathieu; Ida H. Steen; Nigel Grimsley; Bente Edvardsen; Hiroyuki Ogata; Janice Lawrence

  Biological Reviews, Sep. 2021, Peer-reviewed

  
• Discovery of Viral Myosin Genes With Complex Evolutionary History Within Plankton

  Soichiro Kijima; Tom O. Delmont; Urara Miyazaki; Morgan Gaia; Hisashi Endo; Hiroyuki Ogata

  Frontiers in Microbiology, 07 Jun. 2021, Peer-reviewed, Last author, Corresponding author

  
• The Evolution of Rag Gene Enhancers and Transcription Factor E and Id Proteins in the Adaptive Immune System

  Genki Yoshikawa; Kazuko Miyazaki; Hiroyuki Ogata; Masaki Miyazaki

  International Journal of Molecular Sciences, 31 May 2021, Peer-reviewed, Corresponding author

  
• Multiple mutations in RNA polymerase β-subunit gene (rpoB) in Streptomyces incarnatus NRRL8089 enhance production of antiviral antibiotic sinefungin: modeling rif cluster region by density functional theory

  Saori Ogawa; Hitomi Shimidzu; Koji Fukuda; Naoki Tsunekawa; Toshiyuki Hirano; Fumitoshi Sato; Kei Yura; Tomohisa Hasunuma; Kozo Ochi; Michio Yamamoto; Wataru Sakamoto; Kentaro Hashimoto; Hiroyuki Ogata; Tadayoshi Kanao; Michiko Nemoto; Kenji Inagaki; Takashi Tamura

  Bioscience, Biotechnology, and Biochemistry, 24 Apr. 2021, Peer-reviewed

  
• Quantitative Assessment of Nucleocytoplasmic Large DNA Virus and Host Interactions Predicted by Co-occurrence Analyses

  Lingjie Meng; Hisashi Endo; Romain Blanc-Mathieu; Samuel Chaffron; Rodrigo Hernández-Velázquez; Hiroto Kaneko; Hiroyuki Ogata

  mSphere, 21 Apr. 2021, Peer-reviewed, Last author

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• A Persistent Giant Algal Virus, with a Unique Morphology, Encodes an Unprecedented Number of Genes Involved in Energy Metabolism

  Romain Blanc-Mathieu; Håkon Dahle; Antje Hofgaard; David Brandt; Hiroki Ban; Jörn Kalinowski; Hiroyuki Ogata; Ruth-Anne Sandaa

  Journal of Virology, 25 Mar. 2021, Peer-reviewed

  
• Insights into biotic and abiotic modulation of ocean mesopelagic communities

  Janaina Rigonato; Marko Budinich; Alej; ro A. Murillo; Manoela C. Br; {\~{a } }o; Juan J. Pierella Karlusich; Yawouvi Dodji Soviadan; Ann C. Gregory; Hisashi Endo; Florian Kokoszka; Dean Vik; Nicolas Henry; Paul Fr{\'{e } }mont; Karine Labadie; Ahmed A. Zayed; C{\'{e } }line Dimier; Marc Picheral; Sarah Searson; Julie Poulain; Stefanie K; els; St{\'{e } }phane Pesant; Eric Karsenti; Peer Bork; Chris Bowler; Samuel Chaffron; Colomban de Vargas; Damien Eveillard; Marion Gehlen; Daniele Iudicone; Fabien Lombard; Hiroyuki Ogata; Lars Stemmann; Matthew B. Sullivan; Shinichi Sunagawa; Patrick Wincker; Olivier Jaillon

  27 Feb. 2021

  
• Draft Genome Sequence of Medusavirus Stheno, Isolated from the Tatakai River of Uji, Japan

  Koki Yoshida; Ruixuan Zhang; Kimberly G. Garcia; Hisashi Endo; Yasuhiro Gotoh; Tetsuya Hayashi; Masaharu Takemura; Hiroyuki Ogata

  Microbiology Resource Announcements, 07 Jan. 2021, Peer-reviewed, Last author

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• The complete genomic sequence of the novel myovirus RP13 infecting Ralstonia solanacearum, the causative agent of bacterial wilt

  Takeru Kawasaki; Hisashi Endo; Hiroyuki Ogata; Orawan Chatchawankanphanich; Takashi Yamada

  Archives of Virology, 02 Jan. 2021, Peer-reviewed

  
• Eukaryotic virus composition can predict the efficiency of carbon export in the global ocean

  Hiroto Kaneko; Romain Blanc-Mathieu; Hisashi Endo; Samuel Chaffron; Tom O. Delmont; Morgan Gaia; Nicolas Henry; Rodrigo Hernández-Velázquez; Canh Hao Nguyen; Hiroshi Mamitsuka; Patrick Forterre; Olivier Jaillon; Colomban de Vargas; Matthew B. Sullivan; Curtis A. Suttle; Lionel Guidi; Hiroyuki Ogata

  iScience, Jan. 2021, Peer-reviewed, Last author

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• Mucosal microbiota and gene expression are associated with long-term remission after discontinuation of adalimumab in ulcerative colitis

  Toshiharu Sakurai; Hiroki Nishiyama; Kazuko Sakai; Marco A. De Velasco; Tomoyuki Nagai; Yoriaki Komeda; Hiroshi Kashida; Akiyoshi Okada; Isao Kawai; Kazuto Nishio; Hiroyuki Ogata; Masatoshi Kudo

  Scientific Reports, Dec. 2020

  
• Deficiency of Gankyrin in the small intestine is associated with augmented colitis accompanied by altered bacterial composition of intestinal microbiota

  Toshiharu Sakurai; Hiroki Nishiyama; Tomoyuki Nagai; Susumu Goto; Hiroyuki Ogata; Masatoshi Kudo

  BMC Gastroenterology, Dec. 2020, Peer-reviewed

  
• Ecological Structuring of Temperate Bacteriophages in the Inflammatory Bowel Disease-Affected Gut

  Hiroki Nishiyama; Hisashi Endo; Romain Blanc-Mathieu; Hiroyuki Ogata

  Microorganisms, 27 Oct. 2020, Peer-reviewed, Last author, Corresponding author

  
• The transcription factor E2A activates multiple enhancers that drive Rag expression in developing T and B cells

  Kazuko Miyazaki; Hitomi Watanabe; Genki Yoshikawa; Kenian Chen; Reiko Hidaka; Yuki Aitani; Kai Osawa; Rie Takeda; Yotaro Ochi; Shizue Tani-ichi; Takuya Uehata; Osamu Takeuchi; Koichi Ikuta; Seishi Ogawa; Gen Kondoh; Yin C. Lin; Hiroyuki Ogata; Masaki Miyazaki

  Science Immunology, 04 Sep. 2020, Peer-reviewed

  
• Biogeography of marine giant viruses reveals their interplay with eukaryotes and ecological functions

  Endo H; Blanc-Mathieu R; Li Y; Salazar G; Henry N; Labadie K; de Vargas C; Sullivan M.B; Bowler C; Wincker P; Karp-Boss L; Sunagawa S; Ogata H

  Nature Ecology & Evolution, Sep. 2020, Peer-reviewed, Last author, Corresponding author

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• Tara Oceans: towards global ocean ecosystems biology

  Shinichi Sunagawa; Silvia G. Acinas; Peer Bork; Chris Bowler; Damien Eveillard; Gabriel Gorsky; Lionel Guidi; Daniele Iudicone; Eric Karsenti; Fabien Lombard; Hiroyuki Ogata; Stephane Pesant; Matthew B. Sullivan; Patrick Wincker; Colomban de Vargas

  Nature Reviews Microbiology, 12 May 2020, Peer-reviewed

  
• An Optimized Metabarcoding Method for Mimiviridae

  Florian Prodinger; Hisashi Endo; Yasuhiro Gotoh; Yanze Li; Daichi Morimoto; Kimiho Omae; Kento Tominaga; Romain Blanc-Mathieu; Yoshihito Takano; Tetsuya Hayashi; Keizo Nagasaki; Takashi Yoshida; Hiroyuki Ogata

  Microorganisms, 02 Apr. 2020, Peer-reviewed

  
• Diel cycling of the cosmopolitan abundant Pelagibacter virus 37-F6: one of the most abundant viruses on earth.

  Francisco Martinez-Hernandez; Elaine Luo; Kento Tominaga; Hiroyuki Ogata; Takashi Yoshida; Edward F DeLong; Manuel Martinez-Garcia

  Environmental microbiology reports, Apr. 2020, Peer-reviewed

  
• Algal Viruses Belonging to a Subgroup Within the Mimiviridae Family

  Ruth-Anne Sandaa; Håkon Dahle; Corina P.D. Brussaard; Hiroyuki Ogata; Romain Blanc-Mathieu

  Reference Module in Life Sciences, 2020, Peer-reviewed

  
• In silico Prediction of Virus-Host Interactions for Marine Bacteroidetes With the Use of Metagenome-Assembled Genomes.

  Kento Tominaga; Daichi Morimoto; Yosuke Nishimura; Hiroyuki Ogata; Takashi Yoshida

  Frontiers in microbiology, 2020, Peer-reviewed

  
• Genome-resolved viral and cellular metagenomes revealed potential key virus-host interactions in a deep freshwater lake.

  Okazaki Y; Nishimura Y; Yoshida T; Ogata H; Nakano S

  Environ. Microbiol., Oct. 2019, Peer-reviewed

  
• The Earth Is Small for "Leviathans": Long Distance Dispersal of Giant Viruses across Aquatic Environments.

  Yanze Li; Hisashi Endo; Yasuhiro Gotoh; Hiroyasu Watai; Nana Ogawa; Romain Blanc-Mathieu; Takashi Yoshida; Hiroyuki Ogata

  Microbes and environments, 25 Sep. 2019, Peer-reviewed

  
• Assessing the viral content of uncultured picoeukaryotes in the global-ocean by single cell genomics

  Yaiza M. Castillo; Jean-François Mangot; Luiz Felipe Benites; Ramiro Logares; Megumi Kuronishi; Hiroyuki Ogata; Olivier Jaillon; Ramon Massana; Marta Sebastián; Dolors Vaqué

  Molecular Ecology, 01 Sep. 2019

  
• Viruses of the eukaryotic plankton are predicted to increase carbon export efficiency in the global sunlit ocean

  Romain Blanc-Mathieu; Hiroto Kaneko; Hisashi Endo; Samuel Chaffron; Rodrigo Hern{\'{a; ndez-Vel{\'{a } }zquez; Canh Hao Nguyen; Hiroshi Mamitsuka; Nicolas Henry; Colomban de Vargas; Matthew B. Sullivan; Curtis A. Suttle; Lionel Guidi; Hiroyuki Ogata

  Jul. 2019, Peer-reviewed

  
• Marine DNA Viral Macro- and Microdiversity from Pole to Pole.

  Gregory A.C; Zayed A.A; Conceicao-Neto N; Temperton B; Bolduc B; Alberti A; Ardyna M; Arkhipova K; Carmichael M; Cruaud C; Dimier C; Dominguez-Huerta G; Ferland J; Kandels S; Liu Y; Marec C; Pesant S; Picheral M; Pisarev S; Poulain J; Tremblay J.E; Vik D; Tara Oceans Coordinators; Babin M; Bowler C; Culley A.I; de Vargas C; Dutilh B.E; Iudicone D; Karp-Boss L; Roux S; Sunagawa S; Wincker P; Sullivan M

  Cell., May 2019, Peer-reviewed

  
• Assessing the viral content of uncultured picoeukaryotes in the global-ocean by single cell genomics

  Castillo Y.M; Mangot J.-F; Benites F; Logares R; Kuronishi M; Ogata H; Jaillon O; Massana R; Sebastián M; Vaqué D

  Cell., May 2019, Peer-reviewed

  
• Medusavirus, a Novel Large DNA Virus Discovered from Hot Spring Water.

  Genki Yoshikawa; Romain Blanc-Mathieu; Chihong Song; Yoko Kayama; Tomohiro Mochizuki; Kazuyoshi Murata; Hiroyuki Ogata; Masaharu Takemura

  Journal of virology, 15 Apr. 2019, Peer-reviewed

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• KofamKOALA: KEGG ortholog assignment based on profile HMM and adaptive score threshold

  Takuya Aramaki; Romain Blanc-Mathieu; Hisashi Endo; Koichi Ohkubo; Minoru Kanehisa; Susumu Goto; Hiroyuki Ogata

  Apr. 2019

  
• Community‐Level Responses to Iron Availability in Open Ocean Plankton Ecosystems

  Caputi L; Carradec Q; Eveillard D; Kirilovsky A; Pelletier; Pierella Karlusich J.J; Vieira F.R.J; Villar E; Chaffron S; Malviya S; Scalco E; Acinas S.G; Alberti A; Aury J.-M; Benoiston A.-S; Bertrand A; Biard T; Bittner L; Boccara M; Brum J.R; Brunet C; Busseni G; Carratala A; Claustre H; Coelho L.P; Colin S; D’Aniello S; Da Silva C; Del Core M; Dore H; Gasparini S; Kokoszka F; Jamet J.-L; Lejeusne C; Lepoivre C; Lescot M; Lima-Mendez G; Lombard F; Lukes J; Maillet N; Madoui M.-A; Martinez E; Mazzocchi M.G; Neou M.B; Paz-Yepes J; Poulain J; Ramondenc S; Romagnan J.-B; Roux S; Manta D.S; Sanges R; Speich S; Sprovieri M; Sunagawa S; Taillander V; Tanaka A; Tirichine L; Trottier C; Uitz J; Veluchamy A; Vesela J; Vincent F; Yau S; Kandels-Lewis S; Searson S; Dimier C; Picheral M; Tara Oceans Coordinators; Bork P; Boss E; de Vargas C; Follows M.J; Grimsley N; Guidi L; Hingamp P; Karsenti E; Sordino P; Stemmann L; Sullivan M.B; Tagliabue A; Zingone A; Garczarek L; d’Ortenzio F; Testor P; Not F; Ribera d’Alcala M; Wincker P; Bowler C; Iudicone D

  Global Biogeochem. Cycles, Jan. 2019, Peer-reviewed

  
• Community-level responses to iron availability in open ocean planktonic ecosystems.

  Caputi L; Carradec Q; Eveillard D; Kirilovsky A; Pelletier; Pierella Karlusich J.J; Vieira F.R.J; Villar E; Chaffron S; Malviya S; Scalco E; Acinas S.G; Alberti A; Aury J.-M; Benoiston A.-S; Bertrand A; Biard T; Bittner L; Boccara M; Brum J.R; Brunet C; Busseni G; Carratala A; Claustre H; Coelho L.P; Colin S; D’Aniello S; Da Silva C; Del Core M; Dore H; Gasparini S; Kokoszka F; Jamet J.-L; Lejeusne C; Lepoivre C; Lescot M; Lima-Mendez G; Lombard F; Lukes J; Maillet N; Madoui M.-A; Martinez E; Mazzocchi M.G; Neou M.B; Paz-Yepes J; Poulain J; Ramondenc S; Romagnan J.-B; Roux S; Manta D.S; Sanges R; Speich S; Sprovieri M; Sunagawa S; Taillander V; Tanaka A; Tirichine L; Trottier C; Uitz J; Veluchamy A; Vesela J; Vincent F; Yau S; Kandels-Lewis S; Searson S; Dimier C; Picheral M; Tara Oceans Coordinators; Bork P; Boss E; de Vargas C; Follows M.J; Grimsley N; Guidi L; Hingamp P; Karsenti E; Sordino P; Stemmann L; Sullivan M.B; Tagliabue A; Zingone A; Garczarek L; d’Ortenzio F; Testor P; Not F; Ribera d’Alcala M; Wincker P; Bowler C; Iudicone D

  Global Biogeochem. Cycles, Jan. 2019, Peer-reviewed

  
• Minimum Information about Uncultivated Virus Genomes (MIUViG): a community consensus on standards and best practices for describing genome sequences from uncultivated viruses.

  Roux S; Adriaenssens E.M; Dutilh B.E; Koonin E.V; Kropinski A.M; Krupovic M; Kuhn J.H; Lavigne R; Brister J.R; Varsani A; Amid C; Aziz R.K; Bordenstein S.R; Bork P; Breitbart M; Cochrane G.R; Daly R.A; Desnues C; Duhaime M.B; Emerson J.B; Enault F; Fuhrman J.A; Hingamp P; Hugenholtz P; Hurwitz B.L; Ivanova N.N; Labonte J.M; Lee K.-B; Malmstrom R.R; Martinez-Garcia M; Mizrachi I; Ogata H; Paez-Espino D; Petit M.-A; Putonti C; Rattei T; Reyes A; Rodriguez-Valera F; Rosario K; Schriml L; Schulz F; Steward G.F; Sullivan M.B; Sunagawa S; Suttle C.A; Temperton B; Tringe S.G; Vega Thurber R; Webster N.S; Whiteson K.L; Wilhelm S.W; Wommack K.E; Woyke T; Wrighton K; Yilmaz P; Yoshida T; Young M.J; Yutin N; Allen L.Z; Kyrpides N.C; Eloe-Fadrosh E.A

  Nat. Biotechnol., Jan. 2019, Peer-reviewed

  
• Fifteen Marseilleviruses Newly Isolated From Three Water Samples in Japan Reveal Local Diversity of Marseilleviridae.

  Keita Aoki; Reika Hagiwara; Motohiro Akashi; Kenta Sasaki; Kazuyoshi Murata; Hiroyuki Ogata; Masaharu Takemura

  Frontiers in microbiology, 2019, Peer-reviewed

  
• Global trends in marine plankton diversity across kingdoms of life.

  Ibarbalz F.M; Henry N; Brandão M.C; Martini S; Busseni G; Byrne H; Coelho L.P; Endo H; Gasol J.M; Gregory A.C; Mahé F; Rigonato J; Royo-Llonch M; Salazar G; Sanz-Sáez I; Scalco E; Soviadan D; Zayed A.A; Zingone A; Labadie K; Ferland J; Marec C; Kandels S; Picheral M; Dimier C; Poulain J; Pisarev S; Carmichael M; Pesant S; Tara Oceans Coordinators; Babin M; Boss E; Iudicone D; Jaillon O; Acinas S.G; Ogata H; Pelletier E; Stemmann L; Sullivan M.B; Sunagawa S; Bopp L; de Vargas C; Karp-Boss L; Wincker P; Lombard F; Bowler C; Zinger L

  Cell., 2019, Peer-reviewed

  
• Gene expression changes and community turnover differentially shape the global ocean metatranscriptome.

  Salazar G; Paoli L; Alberti A; Huerta-Cepas J; Ruscheweyh H.-J; Cuenca M; Field C.M; Coelho L.P; Cruaud C; Engelen S; Gregory A.C; Labadie K; Marec C; Pelletier E; Royo-Llonch M; Roux S; Sánchez P; Uehara H; Zayed A.A; Zeller G; Carmichae M; Dimier C; Ferland J; Kandels S; Picheral M; Pisarev S; Poulain J; Tara Oceans Coordinators; Acinas S.G; Babin M; Bork P; Bowler C; de Vargas C; Guidi L; Hingamp P; Iudicone D; Karp-Boss L; Karsenti E; Ogata H; Pesant S; Speich S; Sullivan M.B; Wincker P; Sunagawa S

  Cell., 2019, Peer-reviewed

  
• Single-cell genomics of multiple uncultured stramenopiles reveals underestimated functional diversity across oceans

  Yoann Seeleuthner; Samuel Mondy; Vincent Lombard; Quentin Carradec; Eric Pelletier; Marc Wessner; Jade Leconte; Jean-François Mangot; Julie Poulain; Karine Labadie; Ramiro Logares; Shinichi Sunagawa; Véronique De Berardinis; Marcel Salanoubat; Céline Dimier; Stefanie Kandels-Lewis; Marc Picheral; Sarah Searson; Silvia G. Acinas; Emmanuel Boss; Michael Follows; Gabriel Gorsky; Nigel Grimsley; Lee Karp-Boss; Uros Krzic; Fabrice Not; Hiroyuki Ogata; Jeroen Raes; Emmanuel G. Reynaud; Christian Sardet; Sabrina Speich; Lars Stemmann; Didier Velayoudon; Jean Weissenbach; Stephane Pesant; Nicole Poulton; Ramunas Stepanauskas; Peer Bork; Chris Bowler; Pascal Hingamp; Matthew B. Sullivan; Daniele Iudicone; Ramon Massana; Jean-Marc Aury; Bernard Henrissat; Eric Karsenti; Olivier Jaillon; Mike Sieracki; Colomban De Vargas; Patrick Wincker

  Nature Communications, 01 Dec. 2018, Peer-reviewed

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• Diatom diversity through HTS-metabarcoding in coastal European seas.

  Piredda R; Claverie J.-M; Decelle J; de Vargas C; Dunthorn M; Edvardsen B; Eikrem W; Forster D; Kooistra W.H.C.F; Logares R; Massana R; Montresor M; Not F; Ogata H; Pawlowski J; Romac S; Sarno D; Stoeck T; Zingone A

  Sci. Rep., Dec. 2018, Peer-reviewed

  
• Degenerate PCR primers to reveal the diversity of giant viruses in coastal waters.

  Li Y; Hingamp P; Watai H; Endo H; Yoshida T; Ogata H

  Viruses, Sep. 2018, Peer-reviewed

  
• Locality and diel cycling of viral production revealed by a 24 h time course cross-omics analysis in a coastal region of Japan

  Takashi Yoshida; Yosuke Nishimura; Hiroyasu Watai; Nana Haruki; Daichi Morimoto; Hiroto Kaneko; Takashi Honda; Keigo Yamamoto; Pascal Hingamp; Yoshihiko Sako; Susumu Goto; Hiroyuki Ogata

  The ISME Journal, May 2018, Peer-reviewed

  
• MAPLE 2.3.0: an improved system for evaluating the functionomes of genomes and metagenomes.

  Arai W; Taniguchi T; Goto S; Moriya Y; Uehara H; Takemoto K; Ogata H; Takami H

  Biosci. Biotechnol. Biochem., May 2018, Peer-reviewed

  
• パンクレリパーゼ摂取による腸管内および便の腸内細菌叢に対する影響の検討

  永井 知行; 櫻井 俊治; 工藤 正俊; 西山 拓輝; 岡崎 能久; 東 慶直; 渡邉 智裕; 五斗 進; 緒方 博之

  日本消化器病学会雑誌, Mar. 2018

  
• Supplementation of pancreatic digestive enzymes alters the composition of intestinal microbiota in mice

  Hiroki Nishiyama; Tomoyuki Nagai; Masatoshi Kudo; Yoshihisa Okazaki; Yoshinao Azuma; Tomohiro Watanabe; Susumu Goto; Hiroyuki Ogata; Toshiharu Sakurai

  Biochemical and Biophysical Research Communications, Jan. 2018, Peer-reviewed

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• Minimum Information about Uncultivated Virus Genomes (MIUViG): a community consensus on standards and best practices for describing genome sequences from uncultivated viruses.

  Roux S; Adriaenssens E.M; Dutilh B.E; Koonin E.V; Kropinski A.M; Krupovic M; Kuhn J.H; Lavigne R; Brister J.R; Varsani A; Amid C; Aziz R.K; Bordenstein S.R; Bork P; Breitbart M; Cochrane G.R; Daly R.A; Desnues C; Duhaime M.B; Emerson J.B; Enault F; Fuhrman J.A; Hingamp P; Hugenholtz P; Hurwitz B.L; Ivanova N.N; Labonte J.M; Lee K.-B; Malmstrom R.R; Martinez-Garcia M; Mizrachi I; Ogata H; Paez-Espino D; Petit M.-A; Putonti C; Rattei T; Reyes A; Rodriguez-Valera F; Rosario K; Schriml L; Schulz F; Steward G.F; Sullivan M.B; Sunagawa S; Suttle C.A; Temperton B; Tringe S.G; Vega Thurber R; Webster N.S; Whiteson K.L; Wilhelm S.W; Wommack K.E; Woyke T; Wrighton K; Yilmaz P; Yoshida T; Young M.J; Yutin N; Allen L.Z; Kyrpides N.C; Eloe-Fadrosh E.A

  Nat. Biotechnol., 2018, Peer-reviewed

  
• Contrasting biogeography and diversity patterns between diatoms and haptophytes in the central Pacific Ocean.

  Endo H; Ogata H; Suzuki K

  Sci. Rep., 2018, Peer-reviewed

  
• Taxon richness of "Megaviridae" exceeds those of Bacteria and Archaea in the ocean.

  Mihara T; Koyano H; Hingamp P; Grimsley N; Goto S; Ogata H

  Microbes Environ., 2018, Peer-reviewed

  
• Xanthomonas citri jumbo phage XacN1 exhibits a wide host range and high complement of tRNA genes.

  Yoshikawa G; Askora A; Blanc-Mathieu R; Kawasaki T; Li Y; Nakano M; Ogata H; Yamada T

  Sci. Rep., 2018, Peer-reviewed

  
• Locality and diel cycling of viral production revealed by a 24 h time course cross-omics analysis in a coastal region of Japan.

  Yoshida T; Nishimura Y; Watai H; Haruki N; Morimoto D; Kaneko H; Honda T; Yamamoto K; Hingamp P; Sako Y; Goto S; Ogata H

  ISME J., 2018, Peer-reviewed

  
• A global ocean atlas of eukaryotic genes.

  Carradec Q; Pelletier E; Da Silva C; Alberti A; Seeleuthner Y; Blanc-Mathieu R; Lima-Mendez G; Rocha F; Tirichine L; Labadie K; Kirilovsky A; Bertrand A; Engelen S; Madoui M.-A; Meheust R; Poulain J; Romac S; Richter D; Yoshikawa G; Dimier C; Kandels-Lewis S; Picheral M; Searson S; Tara Oceans Coordinators; Jaillon O; Aury J.-M; Karsenti E; Sullivan M.B; Sunagawa S; Bork P; Not F; Hingamp P; Raes J; Guidi L; Ogata H; de Vargas C; Iudicone D; Bowler C; Wincker P

  Nat. Commun., 2018, Peer-reviewed

  
• Habitat Alterations by Viruses: Strategies by Tupanviruses and Others.

  Hiroyuki Ogata

  Microbes Environ, 2018, Invited

  
• Structural and Phylogenetic Diversity of Anaerobic Carbon-Monoxide Dehydrogenases.

  Masao Inoue; Issei Nakamoto; Kimiho Omae; Tatsuki Oguro; Hiroyuki Ogata; Takashi Yoshida; Yoshihiko Sako

  Frontiers in microbiology, 2018, Peer-reviewed

  
• Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition

  Adriana Alberti; Julie Poulain; Stefan Engelen; Karine Labadie; Sarah Romac; Isabel Ferrera; Guillaume Albini; Jean-Marc Aury; Caroline Belser; Alexis Bertrand; Corinne Cruaud; Corinne Da Silva; Carole Dossat; Frederick Gavory; Shahinaz Gas; Julie Guy; Maud Haquelle; E'krame Jacoby; Olivier Jaillon; Arnaud Lemainque; Eric Pelletier; Gaelle Samson; Mark Wessner; Silvia G. Acinas; Marta Royo-Llonch; Francisco M. Cornejo-Castillo; Ramiro Logares; Beatriz Fernandez-Gomez; Chris Bowler; Guy Cochrane; Clara Amid; Petra Ten Hoopen; Colomban De Vargas; Nigel Grimsley; Elodie Desgranges; Stefanie Kandels-Lewis; Hiroyuki Ogata; Nicole Poulton; Michael E. Sieracki; Ramunas Stepanauskas; Matthew B. Sullivan; Jennifer R. Brum; Melissa B. Duhaime; Bonnie T. Poulos; Bonnie L. Hurwitz; Stephane Pesant; Eric Karsenti; Patrick Wincker

  SCIENTIFIC DATA, Aug. 2017, Peer-reviewed

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• ViPTree: the viral proteomic tree server

  Yosuke Nishimura; Takashi Yoshida; Megumi Kuronishi; Hideya Uehara; Hiroyuki Ogata; Susumu Goto

  BIOINFORMATICS, Aug. 2017, Peer-reviewed

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• Discriminating the reaction types of plant type III polyketide synthases

  Yugo Shimizu; Hiroyuki Ogata; Susumu Goto

  BIOINFORMATICS, Jul. 2017, Peer-reviewed

  
• Replications of Two Closely Related Groups of Jumbo Phages Show Different Level of Dependence on Host-encoded RNA Polymerase

  Takeru Matsui; Genki Yoshikawa; Tomoko Mihara; Orawan Chatchawankanphanich; Takeru Kawasaki; Miyako Nakano; Makoto Fujie; Hiroyuki Ogata; Takashi Yamada

  FRONTIERS IN MICROBIOLOGY, Jun. 2017, Peer-reviewed

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• Environmental Viral Genomes Shed New Light on Virus-Host Interactions in the Ocean

  Yosuke Nishimura; Hiroyasu Watai; Takashi Honda; Tomoko Mihara; Kimiho Omae; Simon Roux; Romain Blanc-Mathieu; Keigo Yamamoto; Pascal Hingamp; Yoshihiko Sako; Matthew B. Sullivan; Susumu Goto; Hiroyuki Ogata; Takashi Yoshida

  MSPHERE, Mar. 2017, Peer-reviewed

  
• Type III Polyketide Synthases: Functional Classification and Phylogenomics

  Yugo Shimizu; Hiroyuki Ogata; Susumu Goto

  CHEMBIOCHEM, Jan. 2017, Peer-reviewed

  
• A Ralstonia solanacearum phage ϕRP15 is closely related to Viunalikeviruses and encodes 19 tRNA-related sequences

  Tomoko Mihara; Mohamed A. Nasr-Eldin; Orawan Chatchawankanphanich; Anjana Bhunchoth; Namthip Phironrit; Takeru Kawasaki; Miyako Nakano; Makoto Fujie; Hiroyuki Ogata; Takashi Yamada

  Virology Reports, 01 Dec. 2016, Peer-reviewed

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• Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses

  Simon Roux; Jennifer R. Brum; Bas E. Dutilh; Shinichi Sunagawa; Melissa B. Duhaime; Alexander Loy; Bonnie T. Poulos; Natalie Solonenko; Elena Lara; Julie Poulain; Stephane Pesant; Stefanie Kandels-Lewis; Celine Dimier; Marc Picheral; Sarah Searson; Corinne Cruaud; Adriana Alberti; Carlos M. Duarte; Josep M. Gasol; Dolors Vaque; Peer Bork; Silvia G. Acinas; Patrick Wincker; Matthew B. Sullivan

  NATURE, Sep. 2016, Peer-reviewed

  
• Benthic protists: the under-charted majority

  Dominik Forster; Micah Dunthorn; Frederic Mahe; John R. Dolan; Stephane Audic; David Bass; Lucie Bittner; Christophe Boutte; Richard Christen; Jean-Michel Claverie; Johan Decelle; Bente Edvardsen; Elianne Egge; Wenche Eikrem; Angelique Gobet; Wiebe H. C. F. Kooistra; Ramiro Logares; Ramon Massana; Marina Montresor; Fabrice Not; Hiroyuki Ogata; Jan Pawlowski; Massimo C. Pernice; Sarah Romac; Kamran Shalchian-Tabrizi; Nathalie Simon; Thomas A. Richards; Sebastien Santini; Diana Sarno; Raffaele Siano; Daniel Vaulot; Patrick Wincker; Adriana Zingone; Colomban de Vargas; Thorsten Stoeck

  FEMS MICROBIOLOGY ECOLOGY, Aug. 2016, Peer-reviewed

  
• Two asian jumbo phages, phi RSL2 and phi RSF1, infect Ralstonia solanacearum and show common features of phi KZ-related phages

  Anjana Bhunchoth; Romain Blanc-Mathieu; Tomoko Mihara; Yosuke Nishimura; Ahmed Askora; Namthip Phironrit; Chalida Leksomboon; Orawan Chatchawankanphanich; Takeru Kawasaki; Miyako Nakano; Makoto Fujie; Hiroyuki Ogata; Takashi Yamada

  VIROLOGY, Jul. 2016, Peer-reviewed

  
• DNA repair genes in the Megavirales pangenome

  Romain Blanc-Mathieu; Hiroyuki Ogata

  CURRENT OPINION IN MICROBIOLOGY, Jun. 2016, Peer-reviewed, Invited

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• Reverse transcriptase genes are highly abundant and transcriptionally active in marine plankton assemblages

  Magali Lescot; Pascal Hingamp; Kenji K. Kojima; Emilie Villar; Sarah Romac; Alaguraj Veluchamy; Martine Boccara; Olivier Jaillon; Daniele Iudicone; Chris Bowler; Patrick Wincker; Jean-Michel Claverie; Hiroyuki Ogata

  ISME JOURNAL, May 2016, Peer-reviewed

  
• Plankton networks driving carbon export in the oligotrophic ocean

  Lionel Guidi; Samuel Chaffron; Lucie Bittner; Damien Eveillard; Abdelhalim Larhlimi; Simon Roux; Youssef Darzi; Stephane Audic; Leo Berline; Jennifer R. Brum; Luis Pedro Coelho; Julio Cesar Ignacio Espinoza; Shruti Malviya; Shinichi Sunagawa; Celine Dimier; Stefanie Kandels-Lewis; Marc Picheral; Julie Poulain; Sarah Searson; Lars Stemmann; Fabrice Not; Pascal Hingamp; Sabrina Speich; Mick Follows; Lee Karp-Boss; Emmanuel Boss; Hiroyuki Ogata; Stephane Pesant; Jean Weissenbach; Patrick Wincker; Silvia G. Acinas; Peer Bork; Colomban de Vargas; Daniele Iudicone; Matthew B. Sullivan; Jeroen Raes; Eric Karsenti; Chris Bowler; Gabriel Gorsky

  NATURE, Apr. 2016, Peer-reviewed

  
• Linking Virus Genomes with Host Taxonomy

  Tomoko Mihara; Yosuke Nishimura; Yugo Shimizu; Hiroki Nishiyama; Genki Yoshikawa; Hideya Uehara; Pascal Hingamp; Susumu Goto; Hiroyuki Ogata

  VIRUSES-BASEL, Mar. 2016, Peer-reviewed

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• Identification of a new oat beta-amylase by functional proteomics

  Nihed Ben Halima; Bassem Khemakhem; Imen Fendri; Hiroyuki Ogata; Patrick Baril; Chantal Pichon; Slim Abdelkafi

  BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS, Jan. 2016, Peer-reviewed

  
• Deep sequencing of amplified Prasinovirus and host green algal genes from an Indian Ocean transect reveals interacting trophic dependencies and new genotypes

  Camille Clerissi; Yves Desdevises; Sarah Romac; Stephane Audic; Colomban de Vargas; Silvia G. Acinas; Raffaella Casotti; Julie Poulain; Patrick Wincker; Pascal Hingamp; Hiroyuki Ogata; Nigel Grimsley

  ENVIRONMENTAL MICROBIOLOGY REPORTS, Dec. 2015, Peer-reviewed

  
• Marine protist diversity in European coastal waters and sediments as revealed by high-throughput sequencing

  Ramon Massana; Angelique Gobet; Stephane Audic; David Bass; Lucie Bittner; Christophe Boutte; Aurelie Chambouvet; Richard Christen; Jean-Michel Claverie; Johan Decelle; John R. Dolan; Micah Dunthorn; Bente Edvardsen; Irene Forn; Dominik Forster; Laure Guillou; Olivier Jaillon; Wiebe H. C. F. Kooistra; Ramiro Logares; Frederic Mahe; Fabrice Not; Hiroyuki Ogata; Jan Pawlowski; Massimo C. Pernice; Ian Probert; Sarah Romac; Thomas Richards; Sebastien Santini; Kamran Shalchian-Tabrizi; Raffaele Siano; Nathalie Simon; Thorsten Stoeck; Daniel Vaulot; Adriana Zingone; Colomban de Vargas

  ENVIRONMENTAL MICROBIOLOGY, Oct. 2015, Peer-reviewed

  
• Evolution of Eukaryotic DNA Polymerases via Interaction Between Cells and Large DNA Viruses

  Masaharu Takemura; Shin-ichi Yokobori; Hiroyuki Ogata

  JOURNAL OF MOLECULAR EVOLUTION, Aug. 2015, Peer-reviewed

  
• The ocean sampling day consortium

  Anna Kopf; Mesude Bicak; Renzo Kottmann; Julia Schnetzer; Ivaylo Kostadinov; Katja Lehmann; Antonio Fernandez-Guerra; Christian Jeanthon; Eyal Rahav; Matthias Ullrich; Antje Wichels; Gunnar Gerdts; Paraskevi Polymenakou; Giorgos Kotoulas; Rania Siam; Rehab Z. Abdallah; Eva C. Sonnenschein; Thierry Cariou; Fergal O'Gara; Stephen Jackson; Sandi Orlic; Michael Steinke; Julia Busch; Bernardo Duarte; Isabel Cacador; Joao Canning-Clode; Oleksandra Bobrova; Viggo Marteinsson; Eyjolfur Reynisson; Clara Magalhaes Loureiro; Gian Marco Luna; Grazia Marina Quero; Carolin R. Loescher; Anke Kremp; Marie E. DeLorenzo; Lise Ovreas; Jennifer Tolman; Julie LaRoche; Antonella Penna; Marc Frischer; Timothy Davis; Barker Katherine; Christopher P. Meyer; Sandra Ramos; Catarina Magalhaes; Florence Jude-Lemeilleur; Ma Leopoldina Aguirre-Macedo; Shiao Wang; Nicole Poulton; Scott Jones; Rachel Collin; Jed A. Fuhrman; Pascal Conan; Cecilia Alonso; Noga Stambler; Kelly Goodwin; Michael M. Yakimov; Federico Baltar; Levente Bodrossy; Jodie Van De Kamp; Dion M. F. Frampton; Martin Ostrowski; Paul Van Ruth; Paul Malthouse; Simon Claus; Klaas Deneudt; Jonas Mortelmans; Sophie Pitois; David Wallom; Ian Salter; Rodrigo Costa; Declan C. Schroeder; Mahrous M. Kandil; Valentina Amaral; Florencia Biancalana; Rafael Santana; Maria Luiza Pedrotti; Takashi Yoshida; Hiroyuki Ogata; Tim Ingleton; Kate Munnik; Naiara Rodriguez-Ezpeleta; Veronique Berteaux-Lecellier; Patricia Wecker; Ibon Cancio; Daniel Vaulot; Christina Bienhold; Hassan Ghazal; Bouchra Chaouni; Soumya Essayeh; Sara Ettamimi; El Houcine Zaid; Noureddine Boukhatem; Abderrahim Bouali; Rajaa Chahboune; Said Barrijal; Mohammed Timinouni; Fatima El Otmani; Mohamed Bennani; Marianna Mea; Nadezhda Todorova; Ventzislav Karamfilov; Petra ten Hoopen; Guy Cochrane; Stephane L'Haridon; Kemal Can Bizsel; Alessandro Vezzi; Federico M. Lauro; Patrick Martin; Rachelle M. Jensen; Jamie Hinks; Susan Gebbels; Riccardo Rosselli; Fabio De Pascale; Riccardo Schiavon; Antonina dos Santos; Emilie Villar; Stephane Pesant; Bruno Cataletto; Francesca Malfatti; Ranjith Edirisinghe; Jorge A. Herrera Silveira; Michele Barbier; Valentina Turk; Tinkara Tinta; Wayne J. Fuller; Ilkay Salihoglu; Nedime Serakinci; Mahmut Cerkez Ergoren; Eileen Bresnan; Juan Iriberri; Paul Anders Fronth Nyhus; Edvardsen Bente; Hans Erik Karlsen; Peter N. Golyshin; Josep M. Gasol; Snejana Moncheva; Nina Dzhembekova; Zackary Johnson; Christopher David Sinigalliano; Maribeth Louise Gidley; Adriana Zingone; Roberto Danovaro; George Tsiamis; Melody S. Clark; Ana Cristina Costa; Monia El Bour; Ana M. Martins; R. Eric Collins; Anne-Lise Ducluzeau; Jonathan Martinez; Mark J. Costello; Linda A. Amaral-Zettler; Jack A. Gilbert; Neil Davies; Dawn Field; Frank Oliver Gloeckner

  GIGASCIENCE, Jun. 2015, Peer-reviewed

  
• Life-cycle modification in open oceans accounts for genome variability in a cosmopolitan phytoplankton

  Peter von Dassow; Uwe John; Hiroyuki Ogata; Ian Probert; El Mahdi Bendif; Jessica U. Kegel; Stephane Audic; Patrick Wincker; Corinne Da Silva; Jean-Michel Claverie; Scott Doney; David M. Glover; Daniella Mella Flores; Yeritza Herrera; Magali Lescot; Marie-Jose Garet-Delmas; Colomban de Vargas

  ISME JOURNAL, Jun. 2015, Peer-reviewed

  
• Draft genome sequence of four coccolithoviruses: Emiliania huxleyi virus EhV-88, EhV-201, EhV-207, and EhV-208.

  Nissimov JI; Worthy CA; Rooks P; Napier JA; Kimmance SA; Henn MR; Ogata H; Allen MJ

  J Virol, May 2015, Peer-reviewed

  
• Determinants of community structure in the global plankton interactome

  Gipsi Lima-Mendez; Karoline Faust; Nicolas Henry; Johan Decelle; Sebastien Colin; Fabrizio Carcillo; Samuel Chaffron; J. Cesar Ignacio-Espinosa; Simon Roux; Flora Vincent; Lucie Bittner; Youssef Darzi; Jun Wang; Stephane Audic; Leo Berline; Gianluca Bontempi; Ana M. Cabello; Laurent Coppola; Francisco M. Cornejo-Castillo; Francesco d'Ovidio; Luc De Meester; Isabel Ferrera; Marie-Jose Garet-Delmas; Lionel Guidi; Elena Lara; Stephane Pesant; Marta Royo-Llonch; Guillem Salazar; Pablo Sanchez; Marta Sebastian; Caroline Souffreau; Celine Dimier; Marc Picheral; Sarah Searson; Stefanie Kandels-Lewis; Gabriel Gorsky; Fabrice Not; Hiroyuki Ogata; Sabrina Speich; Lars Stemmann; Jean Weissenbach; Patrick Wincker; Silvia G. Acinas; Shinichi Sunagawa; Peer Bork; Matthew B. Sullivan; Eric Karsenti; Chris Bowler; Colomban de Vargas; Jeroen Raes; Silvia G. Acinas; Peer Bork; Emmanuel Boss; Chris Bowler; Colomban De Vargas; Michael Follows; Gabriel Gorsky; Nigel Grimsley; Pascal Hingamp; Daniele Iudicone; Olivier Jaillon; Stefanie Kandels-Lewis; Lee Karp-Boss; Eric Karsenti; Uros Krzic; Fabrice Not; Hiroyuki Ogata; Stephane Pesant; Jeroen Raes; Emmanuel G. Reynaud; Christian Sardet; Mike Sieracki; Sabrina Speich; Lars Stemmann; Matthew B. Sullivan; Shinichi Sunagawa; Didier Velayoudon; Jean Weissenbach; Patrick Wincker

  SCIENCE, May 2015, Peer-reviewed

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• Eukaryotic plankton diversity in the sunlit ocean

  Colomban de Vargas; Stephane Audic; Nicolas Henry; Johan Decelle; Frederic Mahe; Ramiro Logares; Enrique Lara; Cedric Berney; Noan Le Bescot; Ian Probert; Margaux Carmichael; Julie Poulain; Sarah Romac; Sebastien Colin; Jean-Marc Aury; Lucie Bittner; Samuel Chaffron; Micah Dunthorn; Stefan Engelen; Olga Flegontova; Lionel Guidi; Ales Horak; Olivier Jaillon; Gipsi Lima-Mendez; Julius Lukes; Shruti Malviya; Raphael Morard; Matthieu Mulot; Eleonora Scalco; Raffaele Siano; Flora Vincent; Adriana Zingone; Celine Dimier; Marc Picheral; Sarah Searson; Stefanie Kandels-Lewis; Silvia G. Acinas; Peer Bork; Chris Bowler; Gabriel Gorsky; Nigel Grimsley; Pascal Hingamp; Daniele Iudicone; Fabrice Not; Hiroyuki Ogata; Stephane Pesant; Jeroen Raes; Michael E. Sieracki; Sabrina Speich; Lars Stemmann; Shinichi Sunagawa; Jean Weissenbach; Patrick Wincker; Eric Karsenti

  SCIENCE, May 2015, Peer-reviewed

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• Patterns and ecological drivers of ocean viral communities

  Jennifer R. Brum; J. Cesar Ignacio-Espinoza; Simon Roux; Guilhem Doulcier; Silvia G. Acinas; Adriana Alberti; Samuel Chaffron; Corinne Cruaud; Colomban de Vargas; Josep M. Gasol; Gabriel Gorsky; Ann C. Gregory; Lionel Guidi; Pascal Hingamp; Daniele Iudicone; Fabrice Not; Hiroyuki Ogata; Stephane Pesant; Bonnie T. Poulos; Sarah M. Schwenck; Sabrina Speich; Celine Dimier; Stefanie Kandels-Lewis; Marc Picheral; Sarah Searson; Peer Bork; Chris Bowler; Shinichi Sunagawa; Patrick Wincker; Eric Karsenti; Matthew B. Sullivan

  SCIENCE, May 2015, Peer-reviewed

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• Environmental characteristics of Agulhas rings affect interocean plankton transport

  Emilie Villar; Gregory K. Farrant; Michael Follows; Laurence Garczarek; Sabrina Speich; Stephane Audic; Lucie Bittner; Bruno Blanke; Jennifer R. Brum; Christophe Brunet; Raffaella Casotti; Alison Chase; John R. Dolan; Fabrizio d'Ortenzio; Jean-Pierre Gattuso; Nicolas Grima; Lionel Guidi; Christopher N. Hill; Oliver Jahn; Jean-Louis Jamet; Herve Le Goff; Cyrille Lepoivre; Shruti Malviya; Eric Pelletier; Jean-Baptiste Romagnan; Simon Roux; Sebastien Santini; Eleonora Scalco; Sarah M. Schwenck; Atsuko Tanaka; Pierre Testor; Thomas Vannier; Flora Vincent; Adriana Zingone; Celine Dimier; Marc Picheral; Sarah Searson; Stefanie Kandels-Lewis; Silvia G. Acinas; Peer Bork; Emmanuel Boss; Colomban de Vargas; Gabriel Gorsky; Hiroyuki Ogata; Stephane Pesant; Matthew B. Sullivan; Shinichi Sunagawa; Patrick Wincker; Eric Karsenti; Chris Bowler; Fabrice Not; Pascal Hingamp; Daniele Iudicone

  SCIENCE, May 2015, Peer-reviewed

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• Structure and function of the global ocean microbiome

  Shinichi Sunagawa; Luis Pedro Coelho; Samuel Chaffron; Jens Roat Kultima; Karine Labadie; Guillem Salazar; Bardya Djahanschiri; Georg Zeller; Daniel R. Mende; Adriana Alberti; Francisco M. Cornejo-Castillo; Paul I. Costea; Corinne Cruaud; Francesco d'Ovidio; Stefan Engelen; Isabel Ferrera; Josep M. Gasol; Lionel Guidi; Falk Hildebrand; Florian Kokoszka; Cyrille Lepoivre; Gipsi Lima-Mendez; Julie Poulain; Bonnie T. Poulos; Marta Royo-Llonch; Hugo Sarmento; Sara Vieira-Silva; Celine Dimier; Marc Picheral; Sarah Searson; Stefanie Kandels-Lewis; Chris Bowler; Colomban de Vargas; Gabriel Gorsky; Nigel Grimsley; Pascal Hingamp; Daniele Iudicone; Olivier Jaillon; Fabrice Not; Hiroyuki Ogata; Stephane Pesant; Sabrina Speich; Lars Stemmann; Matthew B. Sullivan; Jean Weissenbach; Patrick Wincker; Eric Karsenti; Jeroen Raes; Silvia G. Acinas; Peer Bork

  SCIENCE, May 2015, Peer-reviewed

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• Characterisation of three novel giant viruses reveals huge diversity among viruses infecting Prymnesiales (Haptophyta)

  Torill Vik Johannessen; Gunnar Bratbak; Aud Larsen; Hiroyuki Ogata; Elianne S. Egge; Bente Edvardsen; Wenche Eikrem; Ruth-Anne Sandaa

  VIROLOGY, Feb. 2015, Peer-reviewed

  
• A decade of giant virus genomics: Surprising discoveries opening new questions

  Hiroyuki Ogata; Masaharu Takemura

  Global Virology I-Identifying and Investigating Viral Diseases, 01 Jan. 2015, Peer-reviewed

  
• The 474-kilobase-pair complete genome sequence of CeV-01B, a virus infecting Haptolina (Chrysochromulina) ericina (Prymnesiophyceae)

  Lucie Gallot-Lavall�e; Ant�nio Pagarete; Matthieu Legendre; Sebastien Santini; Ruth-Anne Sandaa; Heinz Himmelbauer; Hiroyuki Ogata; Gunnar Bratbak; Jean-Michel Claverie

  Genome Announcements, 2015, Peer-reviewed

  
• Open science resources for the discovery and analysis of Tara Oceans data

  Stephane Pesant; Fabrice Not; Marc Picheral; Stefanie Kandels-Lewis; Noan Le Bescot; Gabriel Gorsky; Daniele Iudicone; Eric Karsenti; Sabrina Speich; Romain Trouble; Celine Dimier; Sarah Searson

  SCIENTIFIC DATA, 2015, Peer-reviewed

  
• 海洋巨大ウイルス―ゲノムから見えたきた多様性と生態

  三原知子; 五斗進; 緒方博之

  生物の科学 遺伝, 2015

  
• 【特集にあたって】知られざるウイルスの世界をあばく

  武村政春; 緒方博之

  生物の科学 遺伝, 2015

  
• Prasinovirus distribution in the Northwest Mediterranean Sea is affected by the environment and particularly by phosphate availability

  Camille Clerissi; Nigel Grimsley; Lucie Subirana; Eric Maria; Louise Oriol; Hiroyuki Ogata; Herve Moreau; Yves Desdevises

  VIROLOGY, Oct. 2014, Peer-reviewed

  
• Development of DNA mismatch repair gene, MutS, as a diagnostic marker for detection and phylogenetic analysis of algal Megaviruses

  William H. Wilson; Ilana C. Gilg; Amy Duarte; Hiroyuki Ogata

  VIROLOGY, Oct. 2014, Peer-reviewed

  
• Metagenomic 16S rDNA Illumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities

  Ramiro Logares; Shinichi Sunagawa; Guillem Salazar; Francisco M. Cornejo-Castillo; Isabel Ferrera; Hugo Sarmento; Pascal Hingamp; Hiroyuki Ogata; Colomban de Vargas; Gipsi Lima-Mendez; Jeroen Raes; Julie Poulain; Olivier Jaillon; Patrick Wincker; Stefanie Kandels-Lewis; Eric Karsenti; Peer Bork; Silvia G. Acinas

  ENVIRONMENTAL MICROBIOLOGY, Sep. 2014, Peer-reviewed

  
• Unveiling of the Diversity of Prasinoviruses (Phycodnaviridae) in Marine Samples by Using High-Throughput Sequencing Analyses of PCR-Amplified DNA Polymerase and Major Capsid Protein Genes

  Camille Clerissi; Nigel Grimsley; Hiroyuki Ogata; Pascal Hingamp; Julie Poulain; Yves Desdevises

  APPLIED AND ENVIRONMENTAL MICROBIOLOGY, May 2014, Peer-reviewed

  
• Patterns of Rare and Abundant Marine Microbial Eukaryotes

  Ramiro Logares; Stephane Audic; David Bass; Lucie Bittner; Christophe Boutte; Richard Christen; Jean-Michel Claverie; Johan Decelle; John R. Dolan; Micah Dunthorn; Bente Edvardsen; Angelique Gobet; Wiebe H. C. F. Kooistra; Frederic Mahe; Fabrice Not; Hiroyuki Ogata; Jan Pawlowski; Massimo C. Pernice; Sarah Romac; Kamran Shalchian-Tabrizi; Nathalie Simon; Thorsten Stoeck; Sebastien Santini; Raffaele Siano; Patrick Wincker; Adriana Zingone; Thomas A. Richards; Colomban de Vargas; Ramon Massana

  CURRENT BIOLOGY, Apr. 2014, Peer-reviewed

  
• 巨大ウイルスがもたらしたパンドラの箱

  緒方博之; 武村政春

  生物の科学 遺伝, 2014

  
• Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes

  Pascal Hingamp; Nigel Grimsley; Silvia G. Acinas; Camille Clerissi; Lucie Subirana; Julie Poulain; Isabel Ferrera; Hugo Sarmento; Emilie Villar; Gipsi Lima-Mendez; Karoline Faust; Shinichi Sunagawa; Jean-Michel Claverie; Herve Moreau; Yves Desdevises; Peer Bork; Jeroen Raes; Colomban de Vargas; Eric Karsenti; Stefanie Kandels-Lewis; Olivier Jaillon; Fabrice Not; Stephane Pesant; Patrick Wincker; Hiroyuki Ogata

  ISME JOURNAL, Sep. 2013, Peer-reviewed

  
• Pan genome of the phytoplankton Emiliania underpins its global distribution

  Betsy A. Read; Jessica Kegel; Mary J. Klute; Alan Kuo; Stephane C. Lefebvre; Florian Maumus; Christoph Mayer; John Miller; Adam Monier; Asaf Salamov; Jeremy Young; Maria Aguilar; Jean-Michel Claverie; Stephan Frickenhaus; Karina Gonzalez; Emily K. Herman; Yao-Cheng Lin; Johnathan Napier; Hiroyuki Ogata; Analissa F. Sarno; Jeremy Shmutz; Declan Schroeder; Colomban de Vargas; Frederic Verret; Peter von Dassow; Klaus Valentin; Yves Van de Peer; Glen Wheeler; Joel B. Dacks; Charles F. Delwiche; Sonya T. Dyhrman; Gernot Gloeckner; Uwe John; Thomas Richards; Alexandra Z. Worden; Xiaoyu Zhang; Igor V. Grigoriev; Andrew E. Allen; Kay Bidle; M. Borodovsky; C. Bowler; Colin Brownlee; J. Mark Cock; Marek Elias; Vadim N. Gladyshev; Marco Groth; Chittibabu Guda; Ahmad Hadaegh; Maria Debora Iglesias-Rodriguez; J. Jenkins; Bethan M. Jones; Tracy Lawson; Florian Leese; Erika Lindquist; Alexei Lobanov; Alexandre Lomsadze; Shehre-Banoo Malik; Mary E. Marsh; Luke Mackinder; Thomas Mock; Bernd Mueller-Roeber; Antonio Pagarete; Micaela Parker; Ian Probert; Hadi Quesneville; Christine Raines; Stefan A. Rensing; Diego Mauricio Riano-Pachon; Sophie Richier; Sebastian Rokitta; Yoshihiro Shiraiwa; Darren M. Soanes; Mark van der Giezen; Thomas M. Wahlund; Bryony Williams; Willie Wilson; Gordon Wolfe; Louie L. Wurch

  NATURE, Jul. 2013, Peer-reviewed

  
• Diversity patterns of uncultured Haptophytes unravelled by pyrosequencing in Naples Bay

  Lucie Bittner; Angelique Gobet; Stephane Audic; Sarah Romac; Elianne S. Egge; Sebastien Santini; Hiroyuki Ogata; Ian Probert; Bente Edvardsen; Colomban De Vargas

  MOLECULAR ECOLOGY, Jan. 2013, Peer-reviewed

  
• Cyanophage Infection in the Bloom-Forming Cyanobacteria Microcystis aeruginosa in Surface Freshwater

  Yukari Yoshida-Takashima; Mitsuhiro Yoshida; Hiroyuki Ogata; Keizo Nagasaki; Shingo Hiroishi; Takashi Yoshida

  MICROBES AND ENVIRONMENTS, Dec. 2012, Peer-reviewed

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• Phycodnavirus Potassium Ion Channel Proteins Question the Virus Molecular Piracy Hypothesis

  Kay Hamacher; Timo Greiner; Hiroyuki Ogata; James L. Van Etten; Manuela Gebhardt; Luis P. Villarreal; Cristian Cosentino; Anna Moroni; Gerhard Thiel

  PLOS ONE, Jun. 2012, Peer-reviewed

  
• Identification of a new phospholipase D in Carica papaya latex

  Slim Abdelkafi; Abdelkarim Abousalham; Imen Fendri; Hiroyuki Ogata; Nathalie Barouh; Benjamin Fouquet; Frantz Scheirlinckx; Pierre Villeneuve; Frederic Carriere

  GENE, May 2012, Peer-reviewed

  
• Draft Genome Sequence of Four Coccolithoviruses: Emiliania huxleyi Virus EhV-88, EhV-201, EhV-207, and EhV-208

  Jozef I. Nissimov; Charlotte A. Worthy; Paul Rooks; Johnathan A. Napier; Susan A. Kimmance; Matthew R. Henn; Hiroyuki Ogata; Michael J. Allen

  JOURNAL OF VIROLOGY, Mar. 2012, Peer-reviewed

  
• Draft Genome Sequence of the Coccolithovirus Emiliania huxleyi Virus 202

  Jozef I. Nissimov; Charlotte A. Worthy; Paul Rooks; Johnathan A. Napier; Susan A. Kimmance; Matthew R. Henn; Hiroyuki Ogata; Michael J. Allen

  JOURNAL OF VIROLOGY, Feb. 2012, Peer-reviewed

  
• Draft Genome Sequence of the Coccolithovirus Emiliania huxleyi Virus 203

  Jozef I. Nissimov; Charlotte A. Worthy; Paul Rooks; Johnathan A. Napier; Susan A. Kimmance; Matthew R. Henn; Hiroyuki Ogata; Michael J. Allen

  JOURNAL OF VIROLOGY, Dec. 2011, Peer-reviewed

  
• Unveiling the transcriptional features associated with coccolithovirus infection of natural Emiliania huxleyi blooms

  Antonio Pagarete; Gildas Le Corguille; Bela Tiwari; Hiroyuki Ogata; Colomban de Vargas; William H. Wilson; Michael J. Allen

  FEMS MICROBIOLOGY ECOLOGY, Dec. 2011, Peer-reviewed

  
• A Holistic Approach to Marine Eco-Systems Biology

  Eric Karsenti; Silvia G. Acinas; Peer Bork; Chris Bowler; Colomban De Vargas; Jeroen Raes; Matthew Sullivan; Detlev Arendt; Francesca Benzoni; Jean-Michel Claverie; Mick Follows; Gaby Gorsky; Pascal Hingamp; Daniele Iudicone; Olivier Jaillon; Stefanie Kandels-Lewis; Uros Krzic; Fabrice Not; Hiroyuki Ogata; Stephane Pesant; Emmanuel Georges Reynaud; Christian Sardet; Michael E. Sieracki; Sabrina Speich; Didier Velayoudon; Jean Weissenbach; Patrick Wincker

  PLOS BIOLOGY, Oct. 2011, Peer-reviewed

  
• Mimivirus reveals Mre11/Rad50 fusion proteins with a sporadic distribution in eukaryotes, bacteria, viruses and plasmids

  Takashi Yoshida; Jean-Michel Claverie; Hiroyuki Ogata

  VIROLOGY JOURNAL, Sep. 2011, Peer-reviewed

  
• Two new subfamilies of DNA mismatch repair proteins (MutS) specifically abundant in the marine environment

  Hiroyuki Ogata; Jessica Ray; Kensuke Toyoda; Ruth-Anne Sandaa; Keizo Nagasaki; Gunnar Bratbak; Jean-Michel Claverie

  ISME JOURNAL, Jul. 2011, Peer-reviewed

  
• Draft genome sequence of the coccolithovirus EhV-84

  Jozef I. Nissimov; Charlotte A. Worthy; Paul Rooks; Johnathan A. Napier; Susan A. Kimmance; Matthew R. Henn; Hiroyuki Ogata; Michael J. Allen

  STANDARDS IN GENOMIC SCIENCES, 2011, Peer-reviewed

  
• A jumbo phage infecting the phytopathogen Ralstonia solanacearum defines a new lineage of the Myoviridae family

  Takashi Yamada; Souichi Satoh; Hiroki Ishikawa; Akiko Fujiwara; Takeru Kawasaki; Makoto Fujie; Hiroyuki Ogata

  VIROLOGY, Mar. 2010, Peer-reviewed

  
• Distribution of Giant Viruses in Marine Environments.

  Ogata H; Monier A; Claverie J.-M

  Global Change: Mankind-Marine Environment Interactions, 2010

  
• Identification and biochemical characterization of a GDSL-motif carboxylester hydrolase from Carica papaya latex

  Slim Abdelkafi; Hiroyuki Ogata; Nathalie Barouh; Benjamin Fouquet; Regine Lebrun; Michel Pina; Frantz Scheirlinckx; Pierre Villeneuve; Frederic Carriere

  BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR AND CELL BIOLOGY OF LIPIDS, Nov. 2009, Peer-reviewed

  
• Remarkable sequence similarity between the dinoflagellate-infecting marine girus and the terrestrial pathogen African swine fever virus

  Hiroyuki Ogata; Kensuke Toyoda; Yuji Tomaru; Natsuko Nakayama; Yoko Shirai; Jean-Michel Claverie; Keizo Nagasaki

  VIROLOGY JOURNAL, Oct. 2009, Peer-reviewed

  
• Ten good reasons not to exclude giruses from the evolutionary picture

  Jean-Michel Claverie; Hiroyuki Ogata

  NATURE REVIEWS MICROBIOLOGY, Aug. 2009, Peer-reviewed

  
• Horizontal gene transfer of an entire metabolic pathway between a eukaryotic alga and its DNA virus

  Adam Monier; Antonio Pagarete; Colomban de Vargas; Michael J. Allen; Betsy Read; Jean-Michel Claverie; Hiroyuki Ogata

  GENOME RESEARCH, Aug. 2009, Peer-reviewed

  
• Mimivirus and Mimiviridae: Giant viruses with an increasing number of potential hosts, including corals and sponges

  Jean-Michel Claverie; Renata Grzela; Audrey Lartigue; Alain Bernadac; Serge Nitsche; Jean Vacelet; Hiroyuki Ogata; Chantal Abergel

  JOURNAL OF INVERTEBRATE PATHOLOGY, Jul. 2009, Peer-reviewed

  
• Mimivirus

  J. -M. Claverie; C. Abergel; H. Ogata

  LESSER KNOWN LARGE DSDNA VIRUSES, 2009, Peer-reviewed

  
• Transcriptome analysis of functional differentiation between haploid and diploid cells of Emiliania huxleyi, a globally significant photosynthetic calcifying cell

  Peter von Dassow; Hiroyuki Ogata; Ian Probert; Patrick Wincker; Corinne Da Silva; Stephane Audic; Jean-Michel Claverie; Colomban de Vargas

  GENOME BIOLOGY, 2009, Peer-reviewed

  
• Microbiology - How to infect a mimivirus

  Hiroyuki Ogata; Jean-Michel Claverie

  SCIENCE, Sep. 2008, Peer-reviewed

  
• Ma-LMM01 infecting toxic Microcystis aeruginosa illuminates diverse cyanophage genome strategies

  Takashi Yoshida; Keizo Nagasaki; Yukari Takashima; Yoko Shirai; Yuji Tomaru; Yoshitake Takao; Shigetaka Sakamoto; Shingo Hiroishi; Hiroyuki Ogata

  JOURNAL OF BACTERIOLOGY, Mar. 2008, Peer-reviewed

  
• Marine mimivirus relatives are probably large algal viruses

  Adam Monier; Jens Borggaard Larsen; Ruth-Anne Sandaa; Gunnar Bratbak; Jean-Michel Claverie; Hiroyuki Ogata

  VIROLOGY JOURNAL, Jan. 2008, Peer-reviewed

  
• Taxonomic distribution of large DNA viruses in the sea

  Adam Monier; Jean-Michel Claverie; Hiroyuki Ogata

  GENOME BIOLOGY, 2008, Peer-reviewed

  
• Horizontal gene transfer and nucleotide compositional anomaly in large DNA viruses

  Adam Monier; Jean-Michel Claverie; Hiroyuki Ogata

  BMC GENOMICS, Dec. 2007, Peer-reviewed

  
• Horizontal gene transfer and nucleotide compositional anomaly in large DNA viruses

  Adam Monier; Jean-Michel Claverie; Hiroyuki Ogata

  BMC GENOMICS, Dec. 2007, Peer-reviewed

  
• Lateral gene transfer between obligate intracellular bacteria: Evidence from the Rickettsia massiliae genome

  Guillaume Blanc; Hiroyuki Ogata; Catherine Robert; Stephane Audic; Jean-Michel Claverie; Didier Raoult

  GENOME RESEARCH, Nov. 2007, Peer-reviewed

  
• Unique genes in giant viruses: Regular substitution pattern and anomalously short size

  Hiroyuki Ogata; Jean-Michel Claverie

  GENOME RESEARCH, Sep. 2007, Peer-reviewed

  
• Reductive genome evolution from the mother of Rickettsia

  Guillaume Blanc; Hiroyuki Ogata; Catherine Robert; Stephane Audic; Karsten Suhre; Guy Vestris; Jean-Michel Claverie; Didier Raoult

  PLOS GENETICS, Jan. 2007, Peer-reviewed

  
• Genomics of Rickettsial Agents.

  Ogata H; Renesto P

  Rickettsial Diseases: Old and New, 2007, Peer-reviewed

  
• An essential dichotomy of the gene pool of giant DNA viruses.

  Ogata H; Claverie J.-M

  JOBIM 2007, 2007, Peer-reviewed

  
• Mimivirus giant particles incorporate a large fraction of anonymous and unique gene products

  Patricia Renesto; Chantal Abergel; Philippe Decloquement; Danielle Moinier; Said Azza; Hiroyuki Ogata; Patrick Fourquet; Jean-Pierre Gorvel; Jean-Michel Claverie

  JOURNAL OF VIROLOGY, Dec. 2006, Peer-reviewed

  
• Impact of the excision of an ancient repeat insertion on Rickettsia conorii guanylate kinase activity

  Chantal Abergel; Guillaume Blanc; Vincent Monchois; Patricia Renesto; Cecile Sigoillot; Hiroyuki Ogata; Didier Raoult; Jean-Michel Claverie

  MOLECULAR BIOLOGY AND EVOLUTION, Nov. 2006, Peer-reviewed

  
• Identification of two putative rickettsial adhesins by proteomic analysis

  Patricia Renesto; Laurent Samson; Hiroyuki Ogata; Said Azza; Patrick Fourquet; Jean-Pierre Gorvel; Robert A. Heinzen; Didier Raoult

  RESEARCH IN MICROBIOLOGY, Sep. 2006, Peer-reviewed

  
• Genome sequence of Rickettsia bellii illuminates the role of amoebae in gene exchanges between intracellular pathogens

  Hiroyuki Ogata; Bernard La Scola; Stephane Audic; Patricia Renesto; Guillaume Blanc; Catherine Robert; Pierre-Edouard Fournier; Jean-Michel Claverie; Didier Raoult

  PLOS GENETICS, May 2006, Peer-reviewed

  
• Mimivirus and the emerging concept of "giant" virus

  JM Claverie; H Ogata; S Audic; C Abergel; K Suhre; PE Fournier

  VIRUS RESEARCH, Apr. 2006, Peer-reviewed

  
• Comparative genomics of multidrug resistance in Acinetobacter baumannii

  Pierre-Edouard Fournier; David Vallenet; Valerie Barbe; Stephane Audic; Hiroyuki Ogata; Laurent Poirel; Herve Richet; Catherine Robert; Sophie Mangenot; Chantal Abergel; Patrice Nordmann; Jean Weissenbach; Didier Raoult; Jean-Michel Claverie

  PLOS GENETICS, Jan. 2006, Peer-reviewed

  
• Genomics of Rickettsia.

  Ogata H; Raoult D

  Encyclopedia of Genetics, Genomics, Proteomics and Bioinformatics, 2006, Peer-reviewed

  
• Molecular evolution of Rickettsia surface antigens: Evidence of positive selection

  G Blanc; M Ngwamidiba; H Ogata; PE Fournier; JM Claverie; D Raoult

  MOLECULAR BIOLOGY AND EVOLUTION, Oct. 2005, Peer-reviewed

  
• Multispacer typing of Rickettsia prowazekii enabling epidemiological studies of epidemic typhus

  Y Zhu; PE Fournier; H Ogata; D Raoult

  JOURNAL OF CLINICAL MICROBIOLOGY, Sep. 2005, Peer-reviewed

  
• The genome sequence of Rickettsia felis identifies the first putative conjugative plasmid in an obligate intracellular parasite

  H Ogata; P Renesto; S Audic; C Robert; G Blanc; PE Fournier; H Parinello; JM Claverie; D Raoult

  PLOS BIOLOGY, Aug. 2005, Peer-reviewed

  
• Discovery of protein-coding palindromic repeats in Wolbachiac

  H Ogata; K Suhre; JM Claverie

  TRENDS IN MICROBIOLOGY, Jun. 2005, Peer-reviewed

  
• Tropheryma whipplei genome at the beginning of the post-genomic era

  N Crapoulet; P Renesto; JS Dumler; K Suhre; H Ogata; JM Claverie; D Raoult

  CURRENT GENOMICS, May 2005, Peer-reviewed

  
• Transcriptional response of Rickettsia conorii exposed to temperature variation and stress starvation

  C Rovery; P Renesto; N Crapoulet; K Matsumoto; P Parola; H Ogata; D Raoult

  RESEARCH IN MICROBIOLOGY, Mar. 2005, Peer-reviewed

  
• Some lessons from Rickettsia genomics

  P Renesto; H Ogata; S Audic; JM Claverie; D Raoult

  FEMS MICROBIOLOGY REVIEWS, Jan. 2005, Peer-reviewed

  
• Metagrowth: a new resource for the building of metabolic hypotheses in microbiology

  H Ogata; JM Claverie

  NUCLEIC ACIDS RESEARCH, Jan. 2005, Peer-reviewed

  
• A new example of viral intein in Mimivirus

  Hiroyuki Ogata; Didier Raoult; Jean-Michel Claverie

  VIROLOGY JOURNAL, 2005, Peer-reviewed

  
• Phylogenetic study of Rickettsia species using sequences of the autotransporter protein-encoding gene sca2

  M Ngwamidiba; G Blanc; H Ogata; D Raoulta; PE Fournier

  RICKETTSIOSES: FROM GENOME TO PROTEOME, PATHOBIOLOGY, AND RICKETTSIAE AS AN INTERNATIONAL THREAT, 2005, Peer-reviewed

  
• Rickettsia felis, from culture to genome sequencing

  H. Ogata; C. Robert; S. Audic; S. Robineau; G. Blanc; P. E. Fournier; P. Renesto; J. M. Claverie; D. Raoult

  RICKETTSIOSES: FROM GENOME TO PROTEOME, PATHOBIOLOGY, AND RICKETTSIAE AS AN INTERNATIONAL THREAT, 2005, Peer-reviewed

  
• Bioinformatics in France.

  Ogata H

  Japanese Society for Bioinformatics News Letter, 2005, Peer-reviewed

  
• Use of highly variable intergenic spacer sequences for multispacer typing of Rickettsia conorii strains

  PE Fournier; Y Zhu; H Ogata; D Raoult

  JOURNAL OF CLINICAL MICROBIOLOGY, Dec. 2004, Peer-reviewed

  
• The 1.2-megabase genome sequence of mimivirus

  D Raoult; S Audic; C Robert; C Abergel; P Renesto; H Ogata; B La Scola; M Suzan; JM Claverie

  SCIENCE, Nov. 2004, Peer-reviewed

  
• Genotyping, orientalis-like Yersinia pestis, and plague pandemics

  M Drancourt; W Roux; LV Dang; L Tran-Hung; D Castex; Chenal-Francisque, V; H Ogata; PE Fournier; E Crubezy; D Raoult

  EMERGING INFECTIOUS DISEASES, Sep. 2004, Peer-reviewed

  
• Restricted changes in major surface protein-2 (msp2) transcription after prolonged in vitro passage of Anaplasma phagocytophilum

  DG Scorpio; K Caspersen; H Ogata; J Park; JS Dumler

  BMC MICROBIOLOGY, Jan. 2004, Peer-reviewed

  
• Tropheryma whipplei twist: A human pathogenic Actinobacteria with a reduced genome

  D Raoult; H Ogata; S Audic; C Robert; K Suhre; M Drancourt; JM Claverie

  GENOME RESEARCH, Aug. 2003, Peer-reviewed

  
• Genome-based design of a cell-free culture medium for Tropheryma whipplei

  P Renesto; N Crapoulet; H Ogata; B La Scola; G Vestris; JM Claverie; D Raoult

  LANCET, Aug. 2003, Peer-reviewed

  
• The insertion of palindromic repeats in the evolution of proteins

  JM Claverie; H Ogata

  TRENDS IN BIOCHEMICAL SCIENCES, Feb. 2003, Peer-reviewed

  
• Protein coding palindromes are a unique but recurrent feature in Rickettsia

  H Ogata; S Audic; C Abergel; PE Fournier; JM Claverie

  GENOME RESEARCH, May 2002, Peer-reviewed

  
• Phylogenetic classification of Bartonella species by comparing groEL sequences

  Z Zeaiter; PE Fournier; H Ogata; D Raoult

  INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Jan. 2002, Peer-reviewed

  
• Recent advances in computational genomics.

  Claverie JM; Abergel C; Audic S; Ogata H

  Pharmacogenomics, Nov. 2001, Peer-reviewed

  
• Mechanisms of evolution in Rickettsia conorii and R. prowazekii

  H Ogata; S Audic; P Renesto-Audiffren; PE Fournier; Barbe, V; D Samson; Roux, V; P Cossart; J Weissenbach; JM Claverie; D Raoult

  SCIENCE, Sep. 2001, Peer-reviewed

  
• Selfish DNA and the origin of genes - Response

  H Ogata; S Audic; JM Claverie

  SCIENCE, Jan. 2001, Peer-reviewed

  
• Selfish DNA in protein-coding genes of Rickettsia

  H Ogata; S Audic; Barbe, V; F Artiguenave; PE Fournier; D Raoult; JM Claverie

  SCIENCE, Oct. 2000, Peer-reviewed

  
• Automatic detection of conserved gene clusters in multiple genomes by graph comparison and P-quasi grouping

  W Fujibuchi; H Ogata; H Matsuda; M Kanehisa

  NUCLEIC ACIDS RESEARCH, Oct. 2000, Peer-reviewed

  
• A heuristic graph comparison algorithm and its application to detect functionally related enzyme clusters

  H Ogata; W Fujibuchi; S Goto; M Kanehisa

  NUCLEIC ACIDS RESEARCH, Oct. 2000, Peer-reviewed

  
• AAindex: Amino Acid Index Database

  S Kawashima; H Ogata; M Kanehisa

  NUCLEIC ACIDS RESEARCH, Jan. 1999, Peer-reviewed

  
• KEGG: Kyoto Encyclopedia of Genes and Genomes

  H Ogata; S Goto; K Sato; W Fujibuchi; H Bono; M Kanehisa

  NUCLEIC ACIDS RESEARCH, Jan. 1999, Peer-reviewed

  
• Computation with the KEGG pathway database

  H Ogata; S Goto; W Fujibuchi; M Kanehisa

  BIOSYSTEMS, Jun. 1998, Peer-reviewed

  
• Reconstruction of amino acid biosynthesis pathways from the complete genome sequence

  H Bono; H Ogata; S Goto; M Kanehisa

  GENOME RESEARCH, Mar. 1998, Peer-reviewed

  
• Constructing and Annotating GENES Database in KEGG

  Goto Susumu; Ishida Hiroko; Ogata Hiroyuki; Shiraishi Kotaro; Asanuma Sanae; Fujibuchi Wataru; Okamoto Kayo; Bono Hidemasa; Kanehisa Minoru

  GI, 1998

  
• Automatic Detection of Gene Clusters by P-Quasi Complete Linkage Grouping

  Fujibuchi Wataru; Ogata Hiroyuki; Matsuda Hideo; Kanehisa Minoru

  GI, 1998

  
• Extracting Regulatory Signals from the Upstream Region of Co-expressed Genes Derived from DNA Microarray Experiments

  Kawashima Shuichi; Ogata Hiroyuki; Kanehisa Minoru

  GI, 1998

  
• Detection of Co-regulated Genes by Comparative Analysis of Microbial Genomes

  Ogata Hiroyuki; Fujibuchi Wataru; Kanehisa Minoru

  GI, 1998

  
• KEGG and DBGET/LinkDB: Integration of biological relationships in divergent molecular biology data.

  Fujibuchi W; Kazushige S; Ogata H; Goto S; Kanehisa M

  Knowledge Sharing Across Biological and Medical Knowledge Based Systems, 1998, Peer-reviewed

  
• Systematic Prediction of Orthologous Units of Genes in the Complete Genomes.

  Bono H; Goto S; Fujibuchi W; Ogata H; Kanehisa M

  Genome Inform Ser Workshop Genome Inform, 1998, Peer-reviewed

  
• Reconstruction of amino acid biosynthesis pathways from the complete genome sequence

  Hidemasa Bono; Hiroyuki Ogata; Susumu Goto; Minoru Kanehisa

  Genome Research, 1998, Peer-reviewed

  
• Other sequence analysis tools.

  Ogata H

  Introduction to GenomeNet Databases, 2nd edition, 1998, Peer-reviewed

  
• Genome Scale Prediction of Two-Component Signal Transducers from the Knowledgeof Regulatory Interactions

  Bono Hidemasa; Goto Susumu; Ogata Hiroyuki; Kanehisa Minoru

  GI, 1997

  
• A Survey on E. coli Enzymes: Correlation between Metabolic Pathway and Gene Location.

  Ogata H; Kanehisa M

  ICR Annual Report 1996, 1997, Peer-reviewed

  Access this paper :

  
• The size differences among mammalian introns are due to the accumulation of small deletions

  H Ogata; W Fujibuchi; M Kanehisa

  FEBS LETTERS, Jul. 1996, Peer-reviewed

  
• Genome Scale Prediction of Enzyme Genes Utilizing the Knowledge of Metabolic Interactions

  Bono Hidemasa; Ogata Hiroyuki; Goto Susumu; Kanehisa Minoru

  GI, 1996

  
• Analysis of binary relations and hierarchies of enzymes in the metabolic pathways.

  Ogata H; Bono H; Fujibuchi W; Goto S; Kanehisa M

  Genome Informatics, 1996, Peer-reviewed

  
• Organizing and computing metabolic pathway data in terms of binary relations

  S Goto; H Bono; H Ogata; W Fujibuchi; T Nishioka; K Sato; M Kanehisa

  PACIFIC SYMPOSIUM ON BIOCOMPUTING '97, 1996, Peer-reviewed

  
• Function analysis using protein databases.

  Ogata H; Kanehisa M

  Biophysics, 1996, Peer-reviewed

  
• A GENETIC ALGORITHM-BASED MOLECULAR MODELING TECHNIQUE FOR RNA STEM-LOOP STRUCTURES

  H OGATA; Y AKIYAMA; M KANEHISA

  NUCLEIC ACIDS RESEARCH, Feb. 1995, Peer-reviewed

  
• Homology search.

  Ogata H; Kanehisa M

  Inflammation & Immunology, 1995, Peer-reviewed

  
• A computer modeling method for three-dimensional structure of RNA.

  Ogata H; Akiyama Y; Kanehisa M

  Genome Informatics, 1993, Peer-reviewed

  

Misc.

• Eukaryotic genomic analysis reveals broad host spectrum of a novel viral group: mirusviruses

  Zhao H; Meng L; Hikida H; Ogata H

  Viruses of Microbes 2024, Jul. 2024

  
• Spatio-temporal dynamics revealed the existence of giant virus community specific to dark environments in a deep lake

  Zhang L; Meng L; Fang Y; Ogata H; Okazaki Y

  Viruses of Microbes 2024, Jul. 2024

  
• A giant virus creates its own subcellular enviroment to overcome the codon-trna mismatch

  Zhang R; Hikida H; Shichino Y; Mito M; Iwasaki S; Ogata H

  Viruses of Microbes 2024, Jul. 2024

  
• Nucleocytoviruses in the proto-eukaryotic era encoded multiple aminoacyl-tRNA synthetases

  Ogata H; Kijima S; Hikida H; Delmont T.O; Gaïa M

  Viruses of Microbes 2024, Jul. 2024

  
• Horizontal transfer of large genomic region between pandoraviruses

  Hikida H; Zhang R; Chen J; Okazaki Y; Ogata H

  Viruses of Microbes 2024, Jul. 2024

  
• Functional differentiation between PIP5K genes in A. thaliana

  亘真智子; ROMAIN Blanc-Mathieu; 加藤真理子; 柘植知彦; 緒方博之; 青山卓史

  日本植物生理学会年会(Web), 2021

  
• Investigating the diversity, ecology, and host range of mirusviruses through multiple types of data

  Meng L; Zhao H; Zhang L; Fang Y; Hikida H; Endo H; Okazaki Y; Ogata H

  Tara Oceans Retreat, May 2024

  
• Complex genomes of early giant viruses suggested by phylogenetic trees of aminoacyl-tRNA synthetases (aaRSs).

  Kijima S; Hikida H; Delmont T.O; Gaïa M; Ogata H

  Tara Oceans Retreat, May 2024

  
• Translational dynamics and codon-tRNA mismatch in the infection of a giant virus

  Zhang R; Hikida H; Shichino Y; Mito M; Iwasaki S; Ogata H

  Dec. 2023

  
• Discovery of endogenous giant virus in arbuscular mycorrhizal fungi

  Zhao H; Zhang R; Wu J; Meng L; Okazaki Y; Ogata H

  微生物生態学会第36回大会要旨集, Nov. 2023

  
• Exploring the diversity and dynamics of giant viruses in a deep lake through long-read metagenomics

  Zhang L; Meng L; Fang Y; Ogata H; Okazaki Y

  微生物生態学会第36回大会要旨集, Nov. 2023

  
• Towards understanding the potential host of giant viruses in mesopelagic layer

  Liu W; Neches R.Y; Okazaki Y; Endo H; Ogata H

  微生物生態学会第36回大会要旨集, Nov. 2023

  
• A large gap between the presence and activity of microeukaryotes in a deep sea environment

  Liu W; Neches R.Y; Okazaki Y; Endo H; Ogata H

  OceanDNAテック2023, Nov. 2023, Corresponding author

  
• 定量的メタバーコーディングによる東部インド洋の真核プランクトン群集の水平・鉛直プロファイル

  遠藤寿; Wenwen Liu; 緒方 博之

  日本海洋学会, Sep. 2023

  
• 溶存態rRNAを指標としたプランクトン死滅溶解の推定

  遠藤寿; 緒方博之

  日本海洋学会, Sep. 2023

  
• EukBank メタバーコーディングデータを⽤いたパルマ藻の全球規模海洋分布の解明

  伴広輝; 遠藤寿; 桑田晃; 緒方博之

  日本海洋学会, Sep. 2023

  
• Interaction between mimiviruses highlights a barrier for genetic exchanges between viruses.

  疋田弘之; 緒方博之

  日本微生物生態学会大会(Web), Nov. 2023

  
• 珪藻の進化・繁栄の謎を握る未知の藻類:パルマ藻の生物学

  桑田晃; 伴広輝; 中村洋路; 山田和正; 佐藤晋也; 吉川伸哉; 緒方博之; 一宮睦雄

  日本海洋学会大会講演要旨集(Web), Sep. 2023

  
• Viruses associated with the carbon export efficiency

  Yang Q; Endo H; Ogata H

  Greenocean workshop, May 2022

  
• Translation Landscape of a giant virus.

  Zhang R; Hikida H; Shichino Y; Mito M; Iwasaki S; Ogata H

  Kyoto University Science Club Day 2022., 21 Nov. 2022

  
• Spatio-temporal community genome dynamics of giant viruses in a deep lake uncovered by long-read metagenomics

  Zhang L; Fang Y; Ogata H; Okazaki H

  35th JSME annual meeting, Nov. 2022

  
• 異なる系統に属するミミウイルス間の相互作用解析

  疋田弘之; 緒方博之

  微生物生態学会第35回大会, 02 Nov. 2022

  
• Recurrent polar adaptations of giant viruses infecting eukaryotes

  Meng L; Delmont T; Gaia M; Pelletier E; Fernàndez-Guerra A; Chaffron S; Wu J; Kaneko H; Endo H; Ogata H

  35th JSME annual meeting, 02 Nov. 2022

  
• Characterization of sinking microeukaryote communities in spring Oyashio waters

  Yang Q; Yang Y; Fukuda H; Okazaki Y; Nagata T; Ogata H; Endo H

  35th JSME annual meeting, 02 Nov. 2022

  
• Horizontal and vertical profiling of plankton communities in the Eastern Indian Ocean

  Liu W; Xia J; Hisashima F; Ogawa H; Ogata H; Endo H

  35th JSME annual meeting, 02 Nov. 2022

  
• 海洋植物プランクトンの共生的相互作用が増殖動態に与える影響

  遠藤 寿; 片岡 剛文; 緒方 博之

  微生物生態学会第35回大会, 02 Nov. 2022

  
• MMETSPデータベースにおけるコンタミネーションの包括的解析

  伴 広輝; 岡崎 友輔; 遠藤 寿; 緒方 博之

  微生物生態学会第35回大会, 02 Nov. 2022

  
• Detection of horizontal gene transfers among giant viruses

  Wu J; Meng L; Gaia M; Hikida H; Okazaki Y; Endo H; Ogata H

  35th JSME annual meeting, 02 Nov. 2022

  
• Phylogenomic Analysis to Define the Taxonomic Classification of Medusaviruses Isolated in Japan

  Zhang R; Takemura M; Murata K; Ogata H

  35th JSME annual meeting, 02 Nov. 2022

  
• Temperature-dependent distributions of giant viruses infecting Micromonas

  Demory D; Endo H; Ogata H

  Luncheon Seminar at the Department of Biological Sciences, the University of Bergen, 16 Jun. 2022

  
• Eco-evolutionary diversity of the global ocean microbiome across plankton size fraction.

  Henry N; Galand P.E; Salazar G; Budinich M; Bachy C; Delage E; Câmara dos Reis M; Kaneko H; Gaudin M; Lombard F; Ogata H; Acinas S.G; Wincker P; Eveillard D; Sunagawa S; Chaffron S; Jeanthon C; de Vargas C

  JOBIM2022, 05 Jun. 2022

  
• The short-term variation of virus community in an enclosed bay of Japan

  Xia J; Fang Y; Yang Q; Okazaki Y; Yoshida T; Nagasaki K; Hisashi E; Ogata H

  35th JSME annual meeting, 02 Nov. 2011

  
• 巨大ウイルスの一種メドゥーサウイルス : そのゲノムならびに粒子構造に関する特殊性—Medusavirus, One of Giant Viruses : Its Genome and Particle Structure

  武村 政春; 深谷 将; 緒方 博之; 村田 和義

  化学と生物 : 日本農芸化学会会誌 : 生命・食・環境 / 日本農芸化学会 編, Jun. 2022

  
• Purification of Medusavirus stheno histone-like protein H3-H4 and the comparison with sister strain by kinetic analysis of infected cells

  Kobayashi M; Matsumura K; Masuda R; Ogata H; Takemura M

  The 44th Annual Meeting of the Molecular Biology Society of Japa, Dec. 2022

  
• ナノポアシークエンスによる巨大ウイルスゲノムの解析手法評価

  疋田 弘之; 岡﨑 友輔; 緒方 博之

  The 44th Annual Meeting of the Molecular Biology Society of Japan, Dec. 2022

  
• Rapid characterization of novel giant viruses using nanopore sequencing

  Hikida H; Okazaki Y; Zhang R; Ogata H

  VoM 2022 Conference, Jul. 2022

  
• MMETSP データベースにおけるコンタミネーション 日本

  伴広輝; 遠藤寿; 岡崎友輔; 緒方博之

  藻類学会第 46 回大会, Mar. 2022

  
• パンクレリパーゼ摂取による腸管内および便の腸内細菌叢に対する影響の検討

  永井知行; 櫻井俊治; 工藤正俊; 西山拓輝; 岡崎能久; 東慶直; 渡邉智裕; 五斗進; 緒方博之

  日本消化器病学会雑誌(Web), 2018

  
• PB-35 Genome analysis of cyanophage Ma-LMM01 infecting Microcystis aeruginosa. partIII : Analysis of transcriptional control region and temporal gene transcription(Genetic analysis,Poster presentation B) :

  Takashima Yukari; Yoshida Takashi; Yoshida Mitsuhiro; Hiroishi Shingo; Ogata Hiroyuki; Nagasaki Keizo

  日本微生物生態学会講演要旨集, 2007

  
• PB-34 Expression and characterization of lytic enzyme from Microcystis aeruginosa infecting cyanophage Ma-LMM01(Genetic analysis,Poster presentation B) :

  Hosoda Naohiko; Yoshida Takashi; Kurokawa Youichi; Takashima Yukari; Ogata Hiroyuki; Nagasaki Keizou; Hiroishi Shingo

  日本微生物生態学会講演要旨集, 2007

  
• 2-02 The genome sequences of a cyanophage Ma-LMM01 infecting toxic Microcystis aeruginosa(Physiology/Growth,Oral presentation) :

  Yoshida Takashi; Nagasaki Keizo; Takashima Yukari; Shirai Yoko; Hiroishi Shingo; Ogata Hiroyuki

  日本微生物生態学会講演要旨集, 2007

  
• 渦鞭毛Heterocapsa circularisquamaに感染するウイルスHcDNAVの単細胞トランスクリプトーム解析

  高野義人; 櫻井哲也; 池田彩乃; 遠藤寿; 外丸裕司; 緒方博之; 長崎慶三

  藻類, 2022

  
• Aquatic Neovirology

  NAGASAKI Keizo; OGATA Hiroyuki; YOSHIDA Takashi; TOMARU Yuji; KIMURA Kei; NUNOURA Takuro; TAKAKI Yoshihiro; URAYAMA Shun-ichi

  日本ウイルス学会学術集会プログラム・予稿集(Web), 2021

  
• 珪藻の進化・繁栄の謎を握る未知の藻類:パルマ藻のゲノム解析

  桑田晃; 中村洋路; 斉藤憲治; 伴広輝; 緒方博之; 佐藤晋也; 吉川伸哉; 一宮睦雄

  藻類, 2020

  
• Genomics of giant DNA viruses

  緒方 博之

  京都大学化学研究所スーパーコンピュータシステム研究成果報告書, 2017

  
• Macroscale patterns of oceanic zooplankton composition and size structure

  Manoela C. Brandão; Fabio Benedetti; Séverine Martini; Yawouvi Dodji Soviadan; Jean-Olivier Irisson; Jean-Baptiste Romagnan; Amanda Elineau; Corinne Desnos; Laëtitia Jalabert; Andrea S. Freire; Marc Picheral; Lionel Guidi; Gabriel Gorsky; Chris Bowler; Lee Karp-Boss; Nicolas Henry; Colomban de Vargas; Matthew B. Sullivan; Silvia G. Acinas; Marcel Babin; Peer Bork; Emmanuel Boss; Chris Bowler; Guy Cochrane; Colomban de Vargas; Gabriel Gorsky; Lionel Guidi; Nigel Grimsley; Pascal Hingamp; Daniele Iudicone; Olivier Jaillon; Stefanie Kandels; Lee Karp-Boss; Eric Karsenti; Fabrice Not; Hiroyuki Ogata; Nicole Poulton; Stephane Pesant; Jeroen Raes; Christian Sardet; Sabrina Speich; Lars Stemmann; Matthew B. Sullivan; Shinichi Sunagawa; Patrick Wincker; Lars Stemmann; Fabien Lombard

  Scientific Reports, Dec. 2021

  
• Deep ocean metagenomes provide insight into the metabolic architecture of bathypelagic microbial communities

  Silvia G. Acinas; Pablo Sánchez; Guillem Salazar; Francisco M. Cornejo-Castillo; Marta Sebastián; Ramiro Logares; Marta Royo-Llonch; Lucas Paoli; Shinichi Sunagawa; Pascal Hingamp; Hiroyuki Ogata; Gipsi Lima-Mendez; Simon Roux; José M. González; Jesús M. Arrieta; Intikhab S. Alam; Allan Kamau; Chris Bowler; Jeroen Raes; Stéphane Pesant; Peer Bork; Susana Agustí; Takashi Gojobori; Dolors Vaqué; Matthew B. Sullivan; Carlos Pedrós-Alió; Ramon Massana; Carlos M. Duarte; Josep M. Gasol

  Communications Biology, Dec. 2021

  
• Environmental vulnerability of the global ocean epipelagic plankton community interactome

  Samuel Chaffron; Erwan Delage; Marko Budinich; Damien Vintache; Nicolas Henry; Charlotte Nef; Mathieu Ardyna; Ahmed A. Zayed; Pedro C. Junger; Pierre E. Galand; Connie Lovejoy; Alison E. Murray; Hugo Sarmento; Silvia G. Acinas; Marcel Babin; Daniele Iudicone; Olivier Jaillon; Eric Karsenti; Patrick Wincker; Lee Karp-Boss; Matthew B. Sullivan; Chris Bowler; Colomban de Vargas; Damien Eveillard

  Science Advances, Aug. 2021

  
• Integrative analysis of gut microbiome and host transcriptomes reveals associations between treatment outcomes and immunotherapy‐induced colitis

  Toshiharu Sakurai; Marco A De Velasco; Kazuko Sakai; Tomoyuki Nagai; Hiroki Nishiyama; Kentaro Hashimoto; Hirotsugu Uemura; Hisato Kawakami; Kazuhiko Nakagawa; Hiroyuki Ogata; Kazuto Nishio; Masatoshi Kudo

  Molecular Oncology, 28 Jul. 2021

  
• Myosin genes in NCLDVs: their complex origins and putative functions

  Soichiro Kijima; Tom O Delmont; Urara Miyazaki; Morgan Gaia; Hisashi Endo; Hiroyuki Ogata

  Aquatic Virus Workshop 10, Jun. 2021

  
• Recombination between genomes of giant virus Marseilleviridae

  Kimberly Gacayon Garcia, Koki Yoshida, Aoki Keita, Hisashi Endo, Masaharu Takemura, Hiroyuki Ogata

  Aquatic Virus Workshop 10, Jun. 2021

  
• Characteristics and association of microbial eukaryotic and Mimiviridae communities in the Beaufort Sea

  Jun Zia, Sohiko Kameyama, Florian Prodinger, Takashi Yoshida, Kyoung-Ho Cho, Jinyoung Jung, Sung-Ho Kang, Eun-Jin Yang, Hiroyuki Ogata, Hisashi Endo

  Aquatic Virus Workshop 10, Jun. 2021

  
• Who infects whom? Assessment of co-occurrence methods for NCLDV-host interactions

  Lingjie Meng, Hisashi Endo, Romain Blanc-Mathieu, Samuel Chaperon, Rodrigo Hernandez-Velazquez, Hiroto Kaneko, Hiroyuki Ogata

  Aquatic Virus Workshop 10, Jun. 2021

  
• Pole-to-pole biogeography of marine giant viruses and their role in biogeochemical cycles

  Hisashi Endo; Romain Blanc-Mathieu; Hiroyuki Ogata

  Aquatic Virus Workshop 10, Jun. 2021

  
• The association of marine viruses and carbon cycle revealed by a large omits dataset

  Hiroto Kaneko; Blanc-Mathieu Romain; Hisashi Endo; Hiroyuki Ogata

  Aquatic Virus Workshop 10, Jun. 2021

  
• RNA-seq of medusa virus reveals temporal viral gene expression profile and remodeling of the host nucleus

  Ruixuan Zhang; Hisashi Endo; Masaharu Takemura; Hiroyuki Ogata

  Aquatic Virus Workshop 10, Jun. 2021

  
• 海洋巨大ウイルスの地理分布と物質循環における役割

  遠藤 寿; 緒方 博之

  北海道大学低温科学研究所 令和2年度共同利用研究集会「寒冷圏大気—海洋間の生物地球化学的相互作用に関する研究集会」, Mar. 2021

  
• シリカ被殻を持つ真核藻類: パルマ藻・珪藻 の比較ゲノム解析

  伴 広輝; 桑田 晃; 中村 洋路; 佐藤 晋也; 吉川 伸哉; 山田 和正; 一宮 睦雄; 緒方 博之

  日本藻類学会第45回大会, Mar. 2021

  
• TARAメタオミクスデータから解き明かすRNAウイルスと炭素循環の関わり

  金子博人; Romain Blanc-Mathieu; 遠藤 寿; 緒方 博之

  第一回ウイルス生態学セミナー, Dec. 2020

  
• Biomarker discovery based on diversity analysis, decision tree and functional analysis between patients with nivolumab-derived irAE colitis and ulcerative colitis

  橋本謙太郎; 西山拓輝; 永井知行; 櫻井俊治; 緒方博之

  43rd Annual Meeting of the Molecular Biology Society of Japan,MBSJ2020, Dec. 2020

  
• Genome recombination between giant viruses isolated in Japan

  Garcia K; Yoshida K; Aoki K; Endo H; Takemura M; Ogata H. Shuffling Giants

  43rd Annual Meeting of the Molecular Biology Society of Japan,MBSJ2020, Dec. 2020

  
• Medusavirus Transcriptome Analysis Reveals Temporal Gene Expression Patterns and Alteration of Host Transcriptional Landscape

  Zhang R; Endo H; Takemura M; Ogata H

  43rd Annual Meeting of the Molecular Biology Society of Japan,MBSJ2020, Dec. 2020

  
• ニボルマブ由来のirAE大腸炎患者と潰瘍性大腸炎患者間における腸内細菌叢の比較解析

  橋本謙太郎; 西山拓輝; 櫻井俊治; 永井知行; 緒方博之

  第９回生命医薬情報学連合大会（IIMBP2020), Sep. 2020

  
• 深層学習を利用した人工衛星によるリモートセンシングに基づく海洋微生物組成予測法の開発

  金子博人; 富井健太郎; 中村良介; 遠藤寿; 緒方博之

  第９回生命医薬情報学連合大会（IIBMP2020）, Sep. 2020

  
• Medusavirus transcriptome & the genome characterization of a new medusavirus strain.

  Zhang R; Yoshida K; Garcia K; Endo H; Takemura M; Ogata H

  JSME Environmental Virus Meeting 2020, Sep. 2020

  
• Discovery of virmyosin of NCLDV and Analysis of its phylogeny.

  Kijima S; Miyazaki U; Delmont T; Endo H; Ogata H

  JSME Environmental Virus Meeting 2020, Sep. 2020

  
• 宇宙から海洋生態系を観測する

  金子博人、富井健太郎、中村良介、遠藤寿、緒方博之

  リモセン×メタゲノム生命情報科学若手の会 第１２回研究会, Aug. 2020

  
• Is marine prokaryotic viral infection dependent on the host cell density?

  富永賢人; 山本圭吾; 神川龍馬; 緒方博之; 吉田天士

  日本地球化学会年会要旨集(Web), 2020

  
• 渦鞭毛藻ウイルスのDNAポリメラーゼ活性中心は生物界の例外的存在か?

  池田彩乃; 高野義人; 遠藤寿; 緒方博之; 櫻井哲也; 加藤伸一郎; 大西浩平; 森澤啓子; 樋口琢磨; 外丸裕司; 高橋迪子; 長崎慶三

  藻類, 2020

  
• 海洋ウィルスと地球の炭素循環：TARAオミノクスデータの解析による発見

  金子博人; Blanc-Mathieu R; 遠藤寿; 緒方博之

  インテリジェントバイオインフォマティクス研究セミナー, Dec. 2019

  
• 海洋巨大ウィルスにおける新規補助代謝遺伝子の探索

  宮崎うらら; Delmont T; 遠藤寿; Blanc-Mathieu R; 緒方博之

  JSME Environmental Virus Meeting 2019, Nov. 2019

  
• NCLDV host prediction with marker gene co-occurrence analysis in marine metagenomes.

  Meng L; Endo H; Blanc-Mathieu R; Ogata H

  JSME Environmental Virus Meeting 2019, Nov. 2019

  
• 京都府南部水系からの新規マルセイユウィルス株の分離と今後の比較ゲノム解析

  Yoshida K; Takemura M; Endo H; Blanc-Mathieu R; Ogata H

  JSME Environmental Virus Meeting 2019, Nov. 2019

  
• JSME Environmental Virus Meeting 2019

  Prodinger F; Endo H; Takano Y; Li T; Tominaga K; Isozaki T; Blanc-Mathieu R; Gotoh Y; Nagasaki K; Yoshida T; Ogata H

  JSME Environmental Virus Meeting 2019, Nov. 2019

  
• 大阪湾での経時的動態観測で探る海洋微生物ーウィルス群集相互作用

  富永賢人; 山本圭吾; 緒方博之; 左子芳彦; 吉田天士

  JSME Environmental Virus Meeting 2019, Nov. 2019

  
• 真核生物プランクトンに感染するウィルスと沈降粒子による炭素輸送の効率との地球規模での関連

  金子博人; Blanc-Mathieu R; 遠藤寿; 緒方博之

  JSME Environmental Virus Meeting 2019, Nov. 2019

  
• パルマ藻・珪藻の祖先的形質の解明に向けた比較ゲノム解析

  伴広輝; Blanc-Mathieu R; 桑田晃; 佐藤晋也; 吉川伸哉; 一宮睦雄; 緒方博之

  日本微生物学会生態学会 第３３回大会, Sep. 2019

  
• Global biogeography of giant viruses highlights their interplay with eukaryotic community.

  Endo H; Li Y; Blanc-Mathieu R; Ogata H

  日本海洋学会2019年秋季大会, Sep. 2019

  
• The abundance profile of eukaryotic plankton viruses could predict global ocean carbon export efficiency.

  Kaneko H; Blanc-Mathieu R; Endo H; Ogata H

  第８回生命医薬情報連合大会（IIBMP), Sep. 2019

  
• メタゲノム解析でひも解く淡水湖のファージの多様性と生態

  Okazaki Y; Nishimura Y; Yoshida T; Ogata H; Nakano S

  日本微生物生態学会 第３３回大会, Sep. 2019

  
• シアノウィルス-宿主相互作用解明に向けた海洋シアノバクテリアの高純度分手法の確立

  Isozaki T; Tominaga K; Yamamoto K; Sako Y; Ogata H; Yoshida T

  日本微生物生態学会 第３３回大会, Sep. 2019

  
• 未分離の海洋性Bacteroidetes門細菌感染ウィルスの生物情報学的探索

  Tominaga K; Ogata H; Yoshida T

  日本微生物生態学会 第３３回大会, Sep. 2019

  
• Linking seasonal dynamics of Megaviridae and bloom forming eukaryotic phytoplankton in Uranouchi inlet, Japan.

  Prodinger F., Endo H., Li Y., Tominaga K., Isozaki T., Yoshida T., Ogata H.

  日本微生物生態学会 第33回大会, Sep. 2019

  
• Looking for ancestral genomic features in Paroles algae: the sister group of diatoms.

  Ban H; Blanc-Mathieu R; Kuwata A; Yoshikawa S; Sato S; Ichinomiya M; Ogata H

  19th Annual International Workshop on Bioinformatics and Systems Biology, Jul. 2019

  
• A Preliminary Metagenomics Study towards Discovering Novel Auxiliary Metabolic Genes in Marine Large Viruses.

  Miyazaki U; Delmont T; Endo H; Blanc-Mathieu R; Ogata H

  19th Annual International Workshop on Bioinformatics and Systems Biology, Jul. 2019

  
• Analysis of Tara Oceans omics data reveals eukaryotic plankton viruses related to carbon export flux and efficiency.

  Kaneko H; Blanc-Mathieu R; Endo H; Ogata H

  19th Annual International Workshop on Bioinformatics and Systems Biology, Jul. 2019

  
• Seasonal dynamics of a proposed group of giant viruses and bloom forming eukaryotic phytoplankton.

  Prodinger F; Endo H; Li Y; Tominaga K; Tatsuhiro I; Gotoh Y; Yoshida T; Ogata H

  19th Annual International Workshop on Bioinformatics and Systems Biology, Jul. 2019

  
• 渦鞭毛藻に感染する巨大dsDNAウイルスの遺伝子解析

  長崎慶三; 遠藤寿; 高野義人; 外丸裕司; 櫻井哲也; 池田彩乃; 大西浩平; 加藤伸一郎; 緒方博之

  日本水産学会大会講演要旨集, 26 Mar. 2019

  
• 渦鞭毛藻感染性大型ウイルスHcDNAVのゲノム解析―1.ドラフト配列の特徴

  長崎慶三; 遠藤寿; 高野義人; 外丸裕司; 櫻井哲也; 池田彩乃; 大西浩平; 加藤伸一郎; 緒方博之

  藻類, 10 Mar. 2019

  
• A persistent algal virus with an unprecedented amount of metabolic genes.

  Blanc-Mathieu R; Dahle H; Ogata H; Sandaa R.-H

  日本微生物生態学会 第３３回大会, Feb. 2019

  
• Global distribution of nucleocytoplasmic large DNA viruses in the Ocean.

  Endo, H; Li Y; Blanc-Mathieu R; Ogata H

  ASLO2019 Aquatic Sciences Meeting, Feb. 2019

  
• 大阪湾における海洋微生物・ウイルスの群集ダイナミクスと生態学的相互作用解析

  富永賢人; 晴気七菜; 藤原健太郎; 西村陽介; 西村陽介; 山本圭吾; 綿井博康; 左子芳彦; 緒方博之; 吉田天士

  日本ゲノム微生物学会年会要旨集, 2019

  
• 大阪湾の海洋微生物・ウイルスの生態学的相互作用解析

  富永賢人; 西村陽介; 山本圭吾; 緒方博之; 左子芳彦; 吉田天士

  日本水産学会大会講演要旨集, 2019

  
• アカントアメーバに感染する新規ウイルスMedusavirusのゲノム解析

  吉川元貴; Blanc-Mathieu R; 望月智弘; Chiding Song; 村田和義; 緒方博之; 武村政春

  JSME Environmental Virus Meeting 2018, 27 Oct. 2018

  
• Rrymnesium kappa Virus RF01: A deep branching Mimiviridae encoding a large number of metabolic genes.

  Blanc-Mathieu R; Dahle H; Brandt D; Ogata H; Sandaa R. -A

  JSME Environmental Virus Meeting 2018, 27 Oct. 2018

  
• Regression analysis using global ocean metagenomes revealed the contribution of eukaryotic viruses to carbon export.

  Kaneko H; Blanc-Mathieu R; Endo H; Ogata H

  JSME Environmental Virus Meeting 2018, 27 Oct. 2018

  
• 配列類似性に基づいたウイルスゲノム自動分類法

  黒西愛; Blanc-Mathieu R; 遠藤寿; 五斗進; 緒方博之

  JSME Environmental Virus Meeting 2018, 27 Oct. 2018

  
• Diversity of marine prymnesioviruses and their strategies for stable co-existence with their phytoplankton hosts.

  Sandaa R.-A; Lawrence J; Alan-Mathieu R; Dahle H; Steen I.H; Ogata H

  EMBO Workshop Viruses of Microbes 2018, Jul. 2018

  
• Kuronishi M., Blanc-Mathieu R., Endo H., Goto S., Ogata H.

  Development of viral genome classification method based on sequence similarity.

  International Workshop on Bioinformatics and Systems Biology2018, Jul. 2018

  
• Genomic characterization of Medusavirus, a new giant virus infecting Acanthamoeba.

  Yoshikawa G; Blanc-Mathieu R; Song C; Mochizuki T; Murata K; Ogata H; Takemura M

  International Workshop on Bioinformatics and Systems Biology（IBSB）, Jul. 2018

  
• 未分離の海洋性バクテロイデス門細菌感染ウイルスゲノムの探索と同定

  富永賢人; 左子芳彦; 緒方博之; 吉田天士

  日本水産学会大会講演要旨集, 26 Mar. 2018

  
• NCLDVに属する新規巨大ウイルスAcanthamoeba castellanii medusavirusのゲノム解析

  吉川元貴; BLANC‐MATHIEU Romain; 望月智弘; SONG Chihong; 村田和義; 緒方博之; 武村政春

  日本ゲノム微生物学会年会要旨集, 05 Mar. 2018

  
• 一酸化炭素(CO)資化性菌の鍵酵素,COデヒドロゲナーゼの系統学的多様性

  中元一星; 井上真男; 大前公保; 大黒逹希; 緒方博之; 吉田天士; 左子芳彦

  日本水産学会大会講演要旨集, 2018

  
• 巨大ウイルス研究の朝(あした) 温泉の底質泥から分離した新規巨大ウイルスAcanthamoeba castellanii medusavirusの形態学的・ゲノム科学的研究

  武村 政春; 吉川 元貴; Song Chihong; 望月 智弘; Blanc-Mathieu Romain; 村田 和義; 緒方 博之

  生命科学系学会合同年次大会, Dec. 2017

  
• マルチオミクス解析が明らかにする海洋ウイルスの多様性と存在意義

  緒方博之; BLANC‐MATHIEU Romain; HINGAMP Pascal; 西村陽介; 李岩沢; 吉田天士

  日本進化学会大会プログラム・講演要旨集(Web), 24 Aug. 2017

  
• 温泉の底質泥から分離した新規巨大ウイルスについて

  武村政春; SONG Chihong; 望月智弘; 吉川元貴; BLANC‐MATHIEU Romain; 緒方博之; 村田和義

  日本微生物生態学会大会(Web), 2017

  
• 巨大ウイルス群NCLDVに属する新規ウイルスOVのゲノム解析

  吉川元貴; BLANC‐MATHIEU Romain; 望月智弘; SONG Chihong; 村田和義; 緒方博之; 武村政春

  日本微生物生態学会大会(Web), 2017

  
• 完全長ゲノムに基づく海洋ウイルスの定量的動態解析とその宿主微生物の推定

  綿井博康; 本田貴史; 山本圭吾; 西村陽介; 五斗進; 緒方博之; 左子芳彦; 吉田天士

  日本水産学会大会講演要旨集, 26 Mar. 2016

  
• genomic‐OTUを用いたメタゲノム解析による海洋ウイルスの季節変動

  綿井博康; 西村陽介; 山本圭吾; 五斗進; 緒方博之; 左子芳彦; 吉田天士

  日本微生物生態学会大会(Web), 2016

  
• あなたのウイルスゲノムを分類します

  西村陽介; 吉田天士; 緒方博之; 五斗進

  日本微生物生態学会大会(Web), 2016

  
• 次世代シーケンサーを用いた未知の海洋細菌-ウイルス感染系の推定

  綿井博康; 本田貴史; 山本圭吾; 緒方博之; 五斗進; 西村陽介; 左子芳彦; 吉田天士

  日本水産学会大会講演要旨集, 2015

  
• 2P-013 Analysis of dynamic interaction between phages and Ralstonia solanacearum

  Sonomoto Takaya; Kawasaki Takeru; Fuzie Makoto; Ogata Hiroyuki; Yamada Takasi

  日本生物工学会大会講演要旨集, 2014

  
• 海産渦鞭毛藻感染性ウイルスと家畜病原性ウイルスの進化系統関係

  長崎慶三; 豊田健介; 中山奈津子; 外丸裕司; CLAVERIE Jean-Michel; 緒方博之

  日本進化学会大会プログラム・講演要旨集(Web), 2010

  
• 1B-2 渦鞭毛藻ウイルス研究の最前線(口頭発表)

  長崎 慶三; 外丸 裕司; 中山 奈津子; 豊田 健介; 高尾 祥丈; 緒方 博之

  日本微生物生態学会講演要旨集, 2009

  
• 09-170 Distribution of an insertion sequence of cyanophage MaLMM01 in Microcystis aeruginosastrains(Gene transfer)

  Kuno Soutarou; Yoshida Takashi; Hosoda Naohiko; Hiroishi Shingo; Ogata Hiroyuki; Nagasaki Keizou; Sako Yoshihiko

  日本微生物生態学会講演要旨集, 25 Nov. 2008

  
• シアノファージMa-LMM01の転写調節領域とその感染過程における遺伝子転写解析

  吉田天士; 高島ゆかり; 吉田光宏; 広石伸互; 緒方博之; 白井葉子; 長崎慶三

  日本ウイルス学会学術集会プログラム・抄録集, 2007

  
• Microcystis aeruginosaに感染するファージの新規増殖機構の解明

  高島ゆかり; 吉田天士; 吉田光宏; 広石伸互; 緒方博之; 長崎慶三

  日本水産学会大会講演要旨集, 2007

  
• B-10 Genome analysis of cyanophage Ma-LMM01 infecting Microcystis aeruginosa. part II : Transcription pattern of Ma-LMM01 phage genes during infection(Genetic analysis,(2)Oral presentation)

  Takashima Yukari; Yoshida Takashi; Yoshida Mitsuhiro; Hiroishi Singo; Ogata Hiroyuki; Nagasaki Keizo

  日本微生物生態学会講演要旨集, 27 Oct. 2006

  
• B-11 Expression of two lytic enzyme genes on a genome of the cyanophage Ma-LMM01 in Escherichia coli(Genetic analysis,(2)Oral presentation)

  Hosoda Naohiko; Yoshida Takashi; Kurokawa Youichi; Takashima Yukari; Hiroishi Shingo; Ogata Hiroyuki; Nagasaki Keizo

  日本微生物生態学会講演要旨集, 27 Oct. 2006

  
• 有毒アオコ原因藍藻に感染するシアノファージのゲノム解析

  吉田天士; 高島ゆかり; 吉田光宏; 細田直彦; 広石伸互; 緒方博之; 白井葉子; 長崎慶三

  日本ウイルス学会学術集会プログラム・抄録集, 2006

  
• Yersinia pestis genotyping - Response

  D Raoult; M Drancourt; PE Fournier; H Ogata

  EMERGING INFECTIOUS DISEASES, Aug. 2005

  
• Comment on "The 1.2-megabase genome sequence of Mimivirus"

  H Ogata; C Abergel; D Raoult; JM Claverie

  SCIENCE, May 2005

  
• An analysis of gene clusters among various genomes.

  Fujibuchi W; Ogata H; Kanehisa M

  Biophysics, 07 Sep. 1998

  
• Genome scale function prediction method considering the relations among orthologous genes

  BONO H.; OGATA H.; GOTO S.; KANEHISA M.

  Biophysics, 05 Sep. 1997

  
• Size distribution and evolutionary rate of intron revealed by comparison of different mammalian species

  H Ogata; W Fujibuchi; M Kanehisa

  PROGRESS IN BIOPHYSICS & MOLECULAR BIOLOGY, 1996

  
• Statistical features identified from comparison of homologous introns

  Ogata H; Fujibuchi W; Kanehisa M

  GI, 1995

  

Presentations

• Giant viruses – perspectives on their ecological and evolutionary impacts

  Ogata H

  Joint Symposium on Global Health: Kyoto University (KU) – University of Vienna (UNIVIE), 18 Jun. 2024

  
• オミクスデータが切り拓く 海洋微⽣物⽣態学の最前線

  緒方博之

  京都⼤学⼤学院⽣命科学研究科附属⽣命情報解析教育センター キックオフシンポジウム, 2024, Invited

  
• Tara Oceans giant virus studies: Recent and on-going topics

  Ogata H

  Tara Oceans Retreat, 28 May 2024

  
• Polar adaptation of giant viruses in the ocean

  Ogata H

  Ringberg Symposia on Giant Virus Biology, 08 Dec. 2023

  
• 海洋巨大ウイルスの生態と進化

  緒方博之

  OceanDNAテック2023, 01 Nov. 2023, Invited

  
• ウイルス界への招待：ウイルスと私たち、ウイルスと地球環境

  緒方博之

  高槻中・高等学校授業, 20 Sep. 2023, Invited

  
• 常識外れの巨大ウイルスの生態・進化

  緒方博之

  ウイルス学若手研究集会2023, 29 Sep. 2023, Invited

  
• Genomic insights into the evolution and adaptation of large DNA viruses

  Ogata H; Lingjie M; Junyi Wu

  Confect Symposium 2023 – Marine Microbial Virus Ecology and Evolution, 23 Aug. 2023, Invited

  
• 今まさに進化している「ウイルスの理解」

  緒方博之

  微生物コンソーシアム第8回全体会, 18 Jul. 2023, Invited

  
• 海洋マイクロバイオーム 全球生物データに基づく海洋システム学の開拓と次世代育成

  緒方博之

  海洋マイクロバイオームワークショップ, 16 Jun. 2023

  
• メタゲノム解析が明らかにする海洋巨大ウイルスの生態

  緒方博之

  望月研・緒方研合同ワークショップ, 14 Jun. 2023

  
• Giant viruses share their large gene pool via horizontal gene transfer

  Ogata H

  35th JSME annual meeting, 03 Nov. 2022

  
• The huge viral gene pool is shared among Nucleocytoviricota through HG

  Ogata H

  Luncheon Seminar at the Department of Biological Sciences, the University of Bergen, 14 Jun. 2022, Invited

  
• Prediction of eukaryotic plankton community based on remote sensing data

  Ogata H

  Tara Retreat, 09 Jun. 2022, Invited

  
• Viruses associated with the carbon export efficiency

  Ogata H

  Greenocean workshop, 18 May 2022

  
• Viruses as part of Earth’s life system

  Ogata H

  The 12th Asian Symposium on Microbial Ecology (ASME2022), 18 Apr. 2022, Invited

  
• 海洋ウイルスと地球環境

  緒方博之

  公開シンポジウム「生物多様性からみたワイルドサイエンス」, 26 Feb. 2022, Invited

  
• ウイルスは生命系・生態系に組み込まれた、切っても切り離せない、生き生きとした『部分』である

  東京理科大学教養教育研究院主催「知のフロンティア：ウイルスの世紀を生きる第3回～ウイルスとはどういう存在で、人類はどう付き合っていくべきか？」, 24 Feb. 2022, Invited

  
• なんでもありのウイルス進化、だから難しい、だから面白い！

  緒方 博之

  第六回微生物生態マラソンセミナー, 15 Dec. 2021, Invited

  
• Global genetic data reveal lineages of giant viruses and other eukaryotic viruses associated with the carbon export efficiency.

  緒方 博之

  4th Ringberg Symposium on Giant Virus Biology, 19 Nov. 2019, Invited

  
• Eukaryotic giant viruses: update on their evolution, diversity and ecology.

  Hiroyuki Ogata

  ELSI Thermophiles seminar, 30 Aug. 2019

  
• Prediction of viruses enhancing the biological carbon pump.

  Hiroyuki Ogata

  Neo-Virology Informatics Workshop, 29 Aug. 2019

  
• Do viruses enhance the carbon export down to the deep ocean?

  Hiroyuki Ogata

  Gordon Research Conference, 15 Jul. 2019

  
• 地球規模海洋オミクスデータに基づく巨大ウイルスと生物炭素ポンプの関係の解明

  Hiroyuki Ogata

  第2回感染症診断と治療におけるゲノム解析, 15 Mar. 2019, Invited

  
• A giant virus from a freshwater environment with a full set of histone genes

  Hiroyuki Ogata

  9th Aquatic Virus Workshop, 17 Jun. 2018

  
• どこから来て、何をしているのか？

  緒方 博之

  第33回国際生物学賞記念シンポジウム, Dec. 2017, Invited

  
• Diversity and biogeography of marine giruses and their association with the biological carbon pump

  Hiroyuki Ogata

  The 3rd Ringberg Symposium on Giant Virus Biology, 21 Nov. 2017

  
• Multi-omics approach to assess viral impact on marine plankton

  Hiroyuki Ogata

  KAUST Global Ocean Genome Workshop, Oct. 2017, Invited

  
• マルチオミクス解析が明らかにする洋ウイルスの多様性と存在意義

  Hiroyuki Ogata

  日本進化学会第19回大会, Aug. 2017, Invited

  
• 何故に今頃ネオウィルス学？

  緒方 博之

  環境微生物系学会合同大会, Aug. 2017, Invited

  
• Towards unveiling pivotal roles of viruses in marine ecosystems

  Hiroyuki Ogata

  The 73rd Fujihara Seminar, International Conference "Molecular Life of Diatoms", 13 Jul. 2017, Invited

  
• Biodiversity of marine plankton revealed by Tara Oceans' eco-systems approach

  Hiroyuki Ogata

  Tara Coral Conference, Apr. 2017, Invited

  
• 遺伝子科学の昨今、生物学からのアプローチ

  Hiroyuki Ogata

  2016年度日仏会館科学シンポジウム, 03 Dec. 2016, Invited

  
• Extreme diversity, high abundance and activities of giant viruses in the sea.

  Hiroyuki Ogata

  The 39th Annual Meeting of the Molecular Biology Society of Japan, 02 Dec. 2016

  
• アメーバウイルス研究がもたらしたンパクト

  緒方博之

  日本微生物生態学会年会, 24 Oct. 2016

  
• Biodiversity and Chemical Biology of Marine and Terrestrial Life in the Philippine Region

  Hiroyuki Ogata

  Biodiversity and Chemical Biology of Marine and Terrestrial Life in the Philippine Region, 17 Oct. 2016, Invited

  
• ウイルスは生命か？－巨大ウイルスを中心に－

  Hiroyuki Ogata

  第56回生物物理若手の会夏の学校, 04 Sep. 2016, Invited

  
• 海洋巨大ウイルスの多様性と宿主予測

  Hiroyuki Ogata

  水圏微生物研究フォーラム, 09 Aug. 2016, Invited

  
• 海洋ウイルス：環境ゲノムから見る多様性・相互作用・分布.

  Hiroyuki Ogata

  日本海洋学会2016年度春季大会, 17 Mar. 2016, Invited

  
• GenomeNet's services for metagenomics studies

  Ogata H; Mihara T; Nishimura Y; Blanc-Mathieu R; Goto S

  A New Age of Discovery for Aquatic Microeukaryotes, 27 Jan. 2016

  
• 巨大ウイルスは海洋生態系進化の原動力である

  緒方博之

  第37回日本分子生物学会年会(2014/11/25-27), 25 Nov. 2015, Yokohama

  
• 海洋巨大ウイルスの多様性と進化.

  緒方博之

  JT生命誌研究館セミナー, 18 Jun. 2015, Tkatsuki, Invited

  
• 次世代シーケンサーを用いた未知の海洋細菌―ウイルス感染系の推定

  緒方博之

  日本水産学会春季大会(2015/3/27-31), 29 Mar. 2015, Tokyo

  
• 海洋巨大ウイルスの進化と生態

  Hiroyuki Ogata

  京都大学生態研センターセミナー, 20 Feb. 2015, Invited

  
• 巨大ウイルスは海洋生態系進化の原動力である

  緒方博之

  第37回日本分子生物学会年会, 25 Nov. 2014, Yokohama

  
• ウイルスは生命か？−巨大ウイルスを中心に−

  緒方博之

  平成26年第二回化学研究所イブニングセミナー, 12 Nov. 2014, ICR,Uji

  
• Marine viral genomics: from genetic diversity to ecological implications.

  Ogata H

  Sweden-Kyoto Symposium(2014/9/11-12), 02 Sep. 2014, Stockholm University/Karolinska Institute, Stockholm, Invited

  
• Recent bioinformatics development in quantitative metagenomics.

  Ogata H

  The 3rd International Seminar on Biodiversity and Evolution (June 6, 2014, Kyoto Kyoiku Bunka Center, Kyoto, Oral presentation), 06 Jun. 2014, Kyoto, Invited

  
• Giruses in the Ocean: from diversity to their ecological significance (in Japanese).

  Ogata H

  Annual meeting of the Sciety of Genome Microbiology Japan - Symposium 1(2014/3/7-9), 08 Mar. 2014, Tokyo University of Agriculture, Tokyo, Invited

  
• Quantifying large DNA viruses in marine ecosystems.

  Ogata H

  Ocean Science Meeting 2014, Session 075（2014/2/23−28）, 25 Feb. 2014, Hawai, USA

  
• Giant viruses: a unique entry to the natural diversity of DNA processing genes.

  Ogata H

  Second Bioscience and Biotechnology International Symposium: The Nucleic Acid World - Interface between Biology and Chemistry., 29 Jan. 2014, Suzukakedai Campus, Tokyo Institute of Technology., Yokohama, Invited

  
• Quantifying nucleo-cytoplasmic large DNA viruses in marine ecosystems.

  Ogata H

  International Symposium on Giant Virus Biology(2013/11/17-20), 19 Nov. 2013, Ringberg Castle, Tegernsee, Germany, Invited

  
• Richness of NCLDV genes.

  Ogata H

  Tara-Oceans Biodiversity Workshop, ENS, Paris（2013/7/4−5）, 05 Jul. 2013, Paris, France

  
• The big viruses in marine environments.

  Ogata H

  Seminar at Nakai laboratory, Tokyo Univ., Tokyo, 12 Feb. 2013, Tokyo

  
• The wonder world of small giants in the sea.

  Ogata H

  Lecture at Tokyo Institute of Technology, Tokyo, 14 Jun. 2012, Ookayama, Tokyo, Invited

  
• Giant viruses in marine environments.

  Ogata H

  Tara Japan Tour(2012/2/11-19), 17 Feb. 2012, Feb 11-19; JAMSTEC, Yokosuka, Feb-13; Kyoto Univ., Kyoto, Feb-14; National Research Institute of Fisheries and Environment of Inland Sea, Fisheries Research Agency, Hiroshima

  
• Diversity of DNA informational proteins originating from viruses.

  Ogata H

  Aquatic Virus Workshop 6(2011/10/30-11/3), 02 Nov. 2011, Texel, The Netherlands

  
• The girus gene pool.

  Ogata H

  ANR/ARP workshop: International conference on the Viruses of the Environement(2011/3/22-23), 23 Mar. 2011, Heidelberg, Germany, Invited

  
• Genomics and metagenomics of marine giruses.

  Ogata H

  ANR/ARP workshop: Combining high througput genomics, quantitative imaging, in situ oceanographic and satellite data and modeling to better understand plankton ecosystems at the planetary level(2011/1/10-11), 11 Jan. 2011, Villefranche, France, Invited

  
• Mimivirus and other giants of the virus world.

  Ogata H

  Fourth European Congress of Virology(2010/44/7-11), 07 Apr. 2010, Cernobbio, Italy, Invited

  
• The goal of Tara-Girus.

  Ogata H

  Tara Retreat Meeting(2010/2/1-3), 01 Feb. 2010, Heidlberg, Germany, Invited

  
• Mimivirus, its sisters and cousins: towards revealing the hidden world of giant viruses.

  Ogata H

  Seminar Observatoire Oceanologique de Villefranche-sur-Mer, 10 Dec. 2009, Villefranche-sur-Mer, Framce

  
• Horizontal gene transfer between Emiliania huxleyi and viruses (II).

  Ogata H

  Emiliania huxleyi Jamboree(2009/6/17-18), 17 Jun. 2009, Woods Hole Oceanographic Institute

  
• Host-like genes in giant DNA viruses.

  Ogata H

  Lecture at Kyoto University(2008/12/19-22), 22 Dec. 2008, Kyoto, Invited

  
• Aquatic viruses: manipulators of host metabolism and a reservoir of new genes.

  Ogata H

  Lecture at Universite Blaise-Pascal and Universite D'Auvergne, 26 Nov. 2008, Aubiere, France, Invited

  
• Distribution of giant viruses in marine environments.

  Ogata H

  The 13th France-Japan Oceanography Symposium(2008/9/8-10), 10 Sep. 2008, Marseille, France

  
• Giant viruses are old and ubiquitous.

  Ogata H

  Seminaire MAGAMA, 28 Feb. 2008, Marseille, France

  
• Bioinformatics and evolutionary analysis of NCLDVs.

  Ogata H

  Genomics and Ecology of Aquatic Viruses(20082/11-13), 11 Feb. 2008, Banyuls-sur-Mer, France

  
• Surprising discoveries from genomics of intracellular parasites.

  Ogata H

  Seminar at The Institute for Bioinformatics, 25 Oct. 2007, Munich, Germany

  
• New insights into the evolutionary behaviour of giant virus genomes.

  Ogata H

  Bioinformatics Colloquium, 24 Oct. 2007, Munich, Germany, Invited

  
• Comparative genomics of large DNA viruses.

  Ogata H

  Seminar at l'Universite d'Aix Marseille I, 11 Jun. 2007, Marseille, France

  
• Virus-host genome comparison.

  Ogata H

  E. huxleyi Genome Jamboree(20073/19-20), 19 Mar. 2007, Roscoff, France, Invited

  
• Analyses comparatives et quantitatives des genomes viraux.

  Ogata H

  RAVIE(2007/1/25-26), 25 Jan. 2007, Aubiere, France

  
• Genome sequence of Rickettsia bellii suggests the role of amoebae in ancestral gene transfers between intracellular pathogens.

  Ogata H

  International symposium on the comparative biology of the alpha-proteobacteria(2006/4/26-29), 27 Apr. 2006, Blacksburg, Virginia, USA, Invited

  
• Le genome de Rickettsia bellii - le role d'amibe dans l'evolution de pathogenes intracellulaires.

  Ogata H

  IFR-48 seminar, 22 Apr. 2006, Marseille, France

  
• Comparative evolutionary genomics of Rickettsia.

  Ogata H

  CBRC seminar, 24 Mar. 2006, Tokyo

  
• Lessons from Genomics of Rickettsia and Tropheryma.

  Ogata H

  International Symposium From Genomics to Chemical Genomics - 10th Anniversary of KEGG (2005/12/15-16), 15 Dec. 2005, Kyoto, Invited

  
• Mimivirus & Evolution du Vivant.

  Ogata H

  Reunion Evolution Virale(2005/11/7-8), 07 Nov. 2005, Montpelliker, France, Invited

  
• What have we learned from microbial genome projects.

  Ogata H

  Workshop GENOMED-HEALTH(2005/3/4-5), 04 Mar. 2005, Tunis, Tunisia, Invited

  
• An approach to generate testable hypotheses in microbiology.

  Ogata H

  5th International Conference on Systems Biology(2004/10/9-13), 12 Oct. 2004, Heidelberg, Germany

  
• A new database towards rational design of culture conditions of obligate parasites.

  Ogata H

  VI_me Cogr_s de la SFM, 11 May 2004, Bordeaux, France

  
• Rickettsia and Tropheryma: Lessons from small bacterial genomes.

  Ogata H

  CBRC seminar, 22 Dec. 2003, Tokyo

  
• Rickettsia and Tropheryma: Lessons from small parasitic bacterial genomes.

  Ogata H

  Second JSPS Forum, "Postgenome", 28 Nov. 2003, Strasbourg, France, Invited

  
• Bioinformatics and structural genomics of intracellular pathogens and E. coli.

  Ogata H

  E. coli Workshop: Towards New Biology in 21st Century(2003/10/15-17), 15 Oct. 2003, Awaji, Invited

  
• Genome sequence of Tropheryma whipplei Twist: a small human pathogen of the high G+C Gram-positive bacteria.

  Ogata H

  HAMAP Workshop on Microbial Annotation(2003/6/2-4), 02 Jun. 2003, xxx, Invited

  
• Mechanisms of genome evolution in Rickettsia.

  Ogata H

  International Summer School - From Genome to Life(2002/7/15-27), 15 Jul. 2002, Corsica, France, Invited

  
• Protein coding palindromes in Rickettsia: A unique mechanism to create novel protein sequences.

  Ogata H

  Molecular Evolution - International conference jointly organized by ISME and SMBE(2002/6/13-16), 13 Jun. 2002, Sorrento - Naples - Italy

  
• Selfish DNA parasitizing protein-coding genes of Rickettsia.

  Ogata H

  Journ_es _volution Biologique(2001/6/27-29), 27 Jun. 2001, Marseille, France

  
• Rickettsia conorii complete genome sequencing: Preliminary survey.

  Ogata H

  Genomes 2000(2000/4/11-15), 11 Apr. 2000, Paris, France

  
• Unexpected selfish DNA in protein coding regions of Rickettsia.

  Ogata H

  4th Annual Conference on Computational Genomics (TIGR), 2000, xxx, Invited

  
• Detection of co-regulated genes by comparative analysis of microbial genomes. (pp.304-305)

  Ogata H

  Genome Informatics Workshop 1998(1998/12/10-11), 10 Dec. 1998, Tokyo

  
• Integrated analysis of metabolic pathways, sequence evolution and genome organization.

  Ogata H

  Dagstuhl Seminar - Modeling and Simulation of Gene Regulation and Metabolic Pathway(1998/6/21-26), 21 Jun. 1998, Schloss Dagstuhl, Germany, Invited

  
• A graph theoretical approach for comparative analysis of genomic structures and biochemical pathways.

  Ogata H

  Glaxo Wellcome Symposium on Bioinformatics '98, 07 May 1998, Tsukuba, Nippon Glaxo Ltd. Tsukuba Research Laboratories, Invited

  
• Analysis of the metabolic pathways by the similar cluster searching method.

  Ogata H

  Annual Meeting of the Molecular Biology Society of Japan(1997/12/16-19), 19 Dec. 1997, Kyoto

  
• The new age of bioinformatics.

  Ogata H

  A tutuorial at Communications Research Laboratory, Ministry of Posts & Telecommunications, 13 Jun. 1997, Kobe, Invited

  
• Correlation between the chromosomal location of enzyme genes and the organization of metabolic pathways.

  Ogata H

  Meeting on Genome Mapping & Sequencing(1997/5/14-18), 14 May 1997, Cold Spring Harbor Laboratory, New York, USA

  
• Analyses of metabolic pathways - function and evolution based on classification of enzymes.

  Ogata H

  Annual Meeting of the Biophysical Society of Japan, 07 Nov. 1996, Tsukuba

  
• Size distribution and evolutionary rate of intron revealed by comparison of different mammalian species.

  Ogata H

  Progress in biophysics & molecular biology, 65, suppl.1 p.75(1996/8/11-16), 13 Aug. 1996, Amsterdam, Kingdom of the Netherlands

  
• Statistical features identified from comparison of homologous introns. (pp.96-97)

  Ogata H

  Genome Informatics Workshop 1995(1995/12/11-12), 11 Dec. 1995, Yokohama

  
• Substitution rates in noncoding regions in mammalian genes.

  Ogata H

  Annual Meeting of the Biophysical Society of Japan(1995/9/23-25), 23 Sep. 1995, Sapporo

  
• A molecular modeling technique for RNA stem-loop structure.

  Ogata H

  Annual Meeting of the Biophysical Society of Japan(1994/9/28-30), 29 Sep. 1994, Yokohama

  
• A computer modeling method for the three-dimensional structure of RNA.

  Ogata H

  Annual Meeting of the Biophysical Society of Japan(1993/10/12-14), 13 Oct. 1993, Nagoya

  

External funds: Kakenhi

• Virus-driven clockwork in lower tropic level marine ecosystem and its impact on the ocean

  Grant-in-Aid for Scientific Research (S)

  Broad Section K

  Kyoto University

  吉田 天士

  From 05 Jul. 2021, To 31 Mar. 2026, Granted

  海洋ウイルス;海洋微生物;微細藻;オミックス解析;海洋低次生態系;微細藻類

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-21H05057/
• Study of giant virus ecology and virus-host interaction in aquatic environments

  Grant-in-Aid for Scientific Research (B)

  Basic Section 40040:Aquatic life science-related

  Tokyo University of Science

  Masaharu Takemura

  From 01 Apr. 2020, To 31 Mar. 2023, Project Closed

  巨大ウイルス;メドゥーサウイルス;水圏生命科学;ウイルス・宿主相互作用;環境ウイルス;アカントアメーバ;細胞変性効果;DNAウイルス;ヒストン;水圏生態系;細胞動態解析

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-20H03078/
• Aggregate-biosphere: Unveiling hidden regulatory processes in the oceanic carbon cycle

  Grant-in-Aid for Scientific Research (S)

  Broad Section K

  The University of Tokyo

  永田 俊

  From 26 Jun. 2019, To 31 Mar. 2024, Granted

  凝集体;海洋炭素循環;微生物群集;粒子動態;生物炭素ポンプ;ウィルス;海洋;物質循環;細菌;遺伝子解析

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-19H05667/
• Comprehensive understanding of the role of giant viruses in the aquatic microbial ecosystem

  Grant-in-Aid for Scientific Research (B)

  Basic Section 40040:Aquatic life science-related

  Kyoto University

  Hiroyuki Ogata

  From 01 Apr. 2018, To 31 Mar. 2022, Project Closed

  海洋ウイルス;巨大ウイルス;生物地理;多様性;水圏低次生態系;Tara Oceans;進化;生態;微生物群集動態;赤潮;宿主同定;海洋微生物生態系;ウイルス―宿主相互作用;生物炭素ポンプ;水圏微生物生態系;メガウイルス;環境ゲノミクス

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-18H02279/
• Foundation of virus oceanography based on comprehensive virome analysis

  Grant-in-Aid for Scientific Research (B)

  Kyoto University

  Takashi Yoshida

  From 01 Apr. 2017, To 31 Mar. 2020, Project Closed

  海洋低次生態系;ウイルス;微生物;メタゲノム;ビローム;環境ウイルス;海洋ウイルス;海洋微生物;生物間相互作用;海洋メタゲノム;ゲノム

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-17H03850/
• Comparative Biology of Parmales and diatoms to explore the origin and sucess of diatoms

  Grant-in-Aid for Scientific Research (B)

  Fisheries Research and Education Agency

  Akira Kuwata

  From 01 Apr. 2017, To 31 Mar. 2020, Project Closed

  藻類;進化;珪藻;ゲノム;パルマ藻;プランクトン;海洋生物学;植物プランクトン

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-17H03724/
• Probability theory and statistics on a noncommutative topological monoid of strings and their application to bioremediation

  Grant-in-Aid for Scientific Research (B)

  Tokyo Institute of Technology;Institute of Physical and Chemical Research

  Hitoshi Koyano

  From 19 Jul. 2016, To 31 Mar. 2019, Project Closed

  文字列の位相半群;DNA 配列の集団;ダイナミクス;統計的推定;制御;バイオレメディエーション;制御理論;確率・統計;バイオインフォマティクス;数理生物学;微生物の群集;推定;予測;環境再生;文字列;確率論;統計学;計算生物学;確率;統計;計算生物

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-16KT0020/
• Elucidation of mechanisms supporting infection and coexistence of host-virus systems in aquatic environments

  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)

  Biological Sciences

  Kochi University

  Keizo Nagasaki

  From 30 Jun. 2016, To 31 Mar. 2021, Project Closed

  赤潮;巨大ウイルス;メガプライマー;FLDS;珪藻;渦鞭毛藻;深海生態系;NGS（次世代シーケンス）;巨大ウイルス（NCLDV）;珪藻感染性RNAウイルス;海底堆積物コア;宿主特異性;水圏ウイルス;珪藻個体群;海洋分子生態学;珪藻ウイルス;渦鞭毛藻ウイルス;ミミウイルス科;多様性;ゲノムインフォマティクス;赤潮プランクトン;ウイルス;水圏微生物;ウイルス系統組成;外洋域深海生態系;ウイルスデータ解析システム;ウィルス;微生物群集;ウィローム解析;深海堆積物;FLDS法;海洋生態;微生物;ゲノム

  https://kaken.nii.ac.jp/grant/KAKENHI-PLANNED-16H06437/
• Comprehensive, spatiotemporal study and applied research of carboxydotrophs

  Grant-in-Aid for Scientific Research (S)

  Kyoto University

  Yoshihiko SAKO

  From 31 May 2016, To 31 Mar. 2021, Project Closed

  一酸化炭素資化菌;CO代謝;ゲノム解析;トランスクリプトーム解析;海洋コア;好熱菌;ミクロコズム;一酸化炭素資化性菌;水素生成;メタンハイドレード;好熱微生物

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-16H06381/
• A holistic ecosystemic investigation of marine giruses, virophages and their eukaryotic hosts

  Grant-in-Aid for Scientific Research (C)

  Kyoto University

  Hiroyuki Ogata

  From 01 Apr. 2014, To 31 Mar. 2017, Project Closed

  巨大ウイルス;海洋ウイルス;海洋生態系;メタゲノム;多様性;微生物生態;海洋微生物;Tara Oceans;ウイルス－宿主相互作用;海洋メタゲノム;微生物多様性;タラ海洋探査（②フランス）

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-26430184/
• Ecology of giant viruses inhabiting the aphotic zone of the sea

  Grant-in-Aid for Scientific Research (A)

  Medium-sized Section 40:Forestry and forest products science, applied aquatic science, and related fields

  Kyoto University

  緒方 博之

  From 01 Apr. 2022, To 31 Mar. 2026, Granted

  巨大ウイルス;無光層;生態;進化

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-22H00384/
• Viral infection and its control mechanisms of marine plankton communities as revealed by dissolved ribosomal RNA

  Grant-in-Aid for Scientific Research (B)

  Basic Section 40030:Aquatic bioproduction science-related

  Kyoto University

  遠藤 寿

  From 01 Apr. 2022, To 31 Mar. 2026, Granted

  海洋生態;プランクトン;ウイルス;リボソームRNA;メタトランスクリプトーム

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-22H02420/
• Molecular ecological mechanism of bloom disintegration by viral infection

  Grant-in-Aid for Scientific Research (A)

  Medium-sized Section 40:Forestry and forest products science, applied aquatic science, and related fields

  Kochi University

  長崎 慶三

  From 01 Apr. 2022, To 31 Mar. 2027, Granted

  赤潮プランクトン;ウイルス;糖鎖認識機構;巨大蛋白質;長鎖反復配列;赤潮;二本鎖DNAウイルスHaV;特異的感染性;感受性;クローン多様性;生え戻り現象;高度アミノ酸反復領域;長鎖反復アミノ酸長鎖配列;糖鎖;宿主特異性

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-22H00385/
• Viral Infection and Its Control Mechanisms of Marine Plankton Communities as Revealed by Dissolved Ribosomal RNA

  Grant-in-Aid for Scientific Research (B)

  Basic Section 40030:Aquatic bioproduction science-related

  Kyoto University

  遠藤 寿

  From 01 Apr. 2022, To 31 Mar. 2026, Granted

  海洋生態;プランクトン;ウイルス;リボソームRNA;メタトランスクリプトーム

  https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-23K23685/

Education

Teaching subject(s)

• From 01 Apr. 2024, To 31 Mar. 2025

  Introduction to Biophysics

  N488, Spring, Institute for Liberal Arts and Sciences, 2
• From 01 Apr. 2024, To 31 Mar. 2025

  International Skills Practice A

  8303, Year-long, Graduate School of Pharmaceutical Sciences, 1
• From 01 Apr. 2024, To 31 Mar. 2025

  Pharmaceutical Laboratory Coaching Practice B

  8302, Year-long, Graduate School of Pharmaceutical Sciences, 1
• From 01 Apr. 2024, To 31 Mar. 2025

  Pharmaceutical Laboratory Coaching Practice A

  8301, Year-long, Graduate School of Pharmaceutical Sciences, 1
• From 01 Apr. 2024, To 31 Mar. 2025

  Industry-academia Collaborative Internship B

  8306, Year-long, Graduate School of Pharmaceutical Sciences, 1
• From 01 Apr. 2024, To 31 Mar. 2025

  Industry-academia Collaborative Internship A

  8305, Year-long, Graduate School of Pharmaceutical Sciences, 1
• From 01 Apr. 2024, To 31 Mar. 2025

  International Skills Practice B

  8304, Year-long, Graduate School of Pharmaceutical Sciences, 1
• From 01 Apr. 2024, To 31 Mar. 2025

  Laboratory Practice in Medicinal Frontier Sciences

  4213, Year-long, Graduate School of Pharmaceutical Sciences, 1
• From 01 Apr. 2024, To 31 Mar. 2025

  Research Proposal Writing Practice A

  8402, Year-long, Graduate School of Pharmaceutical Sciences, 1
• From 01 Apr. 2024, To 31 Mar. 2025

  Research Proposal Writing Practice B

  8403, Year-long, Graduate School of Pharmaceutical Sciences, 1
• From 01 Apr. 2024, To 31 Mar. 2025

  Seminar on Bioinformatics IIB

  9066, Fall, Graduate School of Science, 1
• From 01 Apr. 2024, To 31 Mar. 2025

  Seminar on Bioinformatics IIA

  9065, Spring, Graduate School of Science, 1
• From 01 Apr. 2024, To 31 Mar. 2025

  Seminar on Bioinformatics ID

  9064, Fall, Graduate School of Science, 1
• From 01 Apr. 2024, To 31 Mar. 2025

  Seminar on Bioinformatics IID

  9068, Fall, Graduate School of Science, 1
• From 01 Apr. 2024, To 31 Mar. 2025

  Seminar on Bioinformatics IIC

  9067, Spring, Graduate School of Science, 1
• From 01 Apr. 2024, To 31 Mar. 2025

  Seminar on Bioinformatics IC

  9063, Spring, Graduate School of Science, 1
• From 01 Apr. 2024, To 31 Mar. 2025

  Seminar on Bioinformatics IB

  9062, Fall, Graduate School of Science, 1
• From 01 Apr. 2024, To 31 Mar. 2025

  Seminar on Bioinformatics IA

  9061, Spring, Graduate School of Science, 1
• From 01 Apr. 2024, To 31 Mar. 2025

  Reaearch Training(Integrated Genomics)

  D160, Year-long, Faculty of Pharmaceutical Sciences, 10
• From 01 Apr. 2024, To 31 Mar. 2025

  Research Training(Bioinformatics)

  D175, Year-long, Faculty of Pharmaceutical Sciences, 10
• From 01 Apr. 2024, To 31 Mar. 2025

  Molecular Biology II

  2703, Fall, Faculty of Science, 2
• From 01 Apr. 2024, To 31 Mar. 2025

  Bioinformatics

  3768, Spring, Faculty of Science, 2
• From 01 Apr. 2024, To 31 Mar. 2025

  Bioinformatics

  9136, Spring, Graduate School of Science, 2
• From 01 Apr. 2024, To 31 Mar. 2025

  Advanced Course on Biological Science A

  9011, Spring, Graduate School of Science, 2
• From 01 Apr. 2024, To 31 Mar. 2025

  Genome Informatics

  C408, Spring, Faculty of Pharmaceutical Sciences, 2
• From 01 Apr. 2024, To 31 Mar. 2025

  Medicinal Frontier Science Research A

  8406, Year-long, Graduate School of Pharmaceutical Sciences, 4
• From 01 Apr. 2024, To 31 Mar. 2025

  Research Training(Bioinformatics)

  8168, Year-long, Faculty of Pharmaceutical Sciences, 6
• From 01 Apr. 2024, To 31 Mar. 2025

  Research in Medicinal Frontier Sciences

  3215, Year-long, Graduate School of Pharmaceutical Sciences, 4
• From 01 Apr. 2024, To 31 Mar. 2025

  Medicinal Frontier Science Research C

  8408, Year-long, Graduate School of Pharmaceutical Sciences, 4
• From 01 Apr. 2024, To 31 Mar. 2025

  Medicinal Frontier Science Research B

  8407, Year-long, Graduate School of Pharmaceutical Sciences, 4
• From 01 Apr. 2024, To 31 Mar. 2025

  Seminar on Critical Reading of Scientific Papers A

  8404, Year-long, Graduate School of Pharmaceutical Sciences, 2
• From 01 Apr. 2024, To 31 Mar. 2025

  Introduction to Bioinformatics for Drug Discovery

  8104, Spring, Graduate School of Pharmaceutical Sciences, 2
• From 01 Apr. 2024, To 31 Mar. 2025

  Seminar in Medicinal Frontier Sciences

  2316, Year-long, Graduate School of Pharmaceutical Sciences, 2
• From 01 Apr. 2024, To 31 Mar. 2025

  Seminar on Critical Reading of Scientific Papers B

  8405, Year-long, Graduate School of Pharmaceutical Sciences, 2
• From 01 Apr. 2024, To 31 Mar. 2025

  Basic Laboratory Techniques in Biological Chemistry

  1207, Spring, Graduate School of Pharmaceutical Sciences, 2
• From 01 Apr. 2024, To 31 Mar. 2025

  Bioinformatics I: Target Discovery

  1113, Fall, Graduate School of Pharmaceutical Sciences, 2
• From 01 Apr. 2023, To 31 Mar. 2024

  Introduction to Biophysics

  N488, Spring, Institute for Liberal Arts and Sciences, 2
• From 01 Apr. 2023, To 31 Mar. 2024

  Pharmaceutical Laboratory Coaching Practice A

  8301, Year-long, Graduate School of Pharmaceutical Sciences, 1
• From 01 Apr. 2023, To 31 Mar. 2024

  Advanced Bioinformatics for Drug Discovery

  8207, Fall, Graduate School of Pharmaceutical Sciences, 1
• From 01 Apr. 2023, To 31 Mar. 2024

  Laboratory Practice in Medicinal Frontier Sciences

  4213, Year-long, Graduate School of Pharmaceutical Sciences, 1
• From 01 Apr. 2023, To 31 Mar. 2024

  Industry-academia Collaborative Internship A

  8305, Year-long, Graduate School of Pharmaceutical Sciences, 1
• From 01 Apr. 2023, To 31 Mar. 2024

  International Skills Practice A

  8303, Year-long, Graduate School of Pharmaceutical Sciences, 1
• From 01 Apr. 2023, To 31 Mar. 2024

  Pharmaceutical Laboratory Coaching Practice B

  8302, Year-long, Graduate School of Pharmaceutical Sciences, 1
• From 01 Apr. 2023, To 31 Mar. 2024

  Research Proposal Writing Practice A

  8402, Year-long, Graduate School of Pharmaceutical Sciences, 1
• From 01 Apr. 2023, To 31 Mar. 2024

  Research Proposal Writing Practice B

  8403, Year-long, Graduate School of Pharmaceutical Sciences, 1
• From 01 Apr. 2023, To 31 Mar. 2024

  Seminar on Bioinformatics IIA

  9065, Spring, Graduate School of Science, 1
• From 01 Apr. 2023, To 31 Mar. 2024

  Seminar on Bioinformatics ID

  9064, Fall, Graduate School of Science, 1
• From 01 Apr. 2023, To 31 Mar. 2024

  Seminar on Bioinformatics IC

  9063, Spring, Graduate School of Science, 1
• From 01 Apr. 2023, To 31 Mar. 2024

  Seminar on Bioinformatics IID

  9068, Fall, Graduate School of Science, 1
• From 01 Apr. 2023, To 31 Mar. 2024

  Seminar on Bioinformatics IIC

  9067, Spring, Graduate School of Science, 1
• From 01 Apr. 2023, To 31 Mar. 2024

  Seminar on Bioinformatics IIB

  9066, Fall, Graduate School of Science, 1
• From 01 Apr. 2023, To 31 Mar. 2024

  Seminar on Bioinformatics IB

  9062, Fall, Graduate School of Science, 1
• From 01 Apr. 2023, To 31 Mar. 2024

  Seminar on Bioinformatics IA

  9061, Spring, Graduate School of Science, 1
• From 01 Apr. 2023, To 31 Mar. 2024

  Research Training(Bioinformatics)

  D175, Year-long, Faculty of Pharmaceutical Sciences, 10
• From 01 Apr. 2023, To 31 Mar. 2024

  Reaearch Training(Integrated Genomics)

  D160, Year-long, Faculty of Pharmaceutical Sciences, 10
• From 01 Apr. 2023, To 31 Mar. 2024

  Bioinformatics

  9136, Spring, Graduate School of Science, 2
• From 01 Apr. 2023, To 31 Mar. 2024

  Advanced Course on Biological Science A

  9011, Spring, Graduate School of Science, 2
• From 01 Apr. 2023, To 31 Mar. 2024

  Bioinformatics :Advanced Course

  9137, Fall, Graduate School of Science, 2
• From 01 Apr. 2023, To 31 Mar. 2024

  Bioinformatics

  3768, Spring, Faculty of Science, 2
• From 01 Apr. 2023, To 31 Mar. 2024

  Medicinal Frontier Science Research B

  8407, Year-long, Graduate School of Pharmaceutical Sciences, 4
• From 01 Apr. 2023, To 31 Mar. 2024

  Medicinal Frontier Science Research A

  8406, Year-long, Graduate School of Pharmaceutical Sciences, 4
• From 01 Apr. 2023, To 31 Mar. 2024

  Skill Development for Bioinformatics

  5001, Year-long, Graduate School of Pharmaceutical Sciences, 4
• From 01 Apr. 2023, To 31 Mar. 2024

  Research in Medicinal Frontier Sciences

  3215, Year-long, Graduate School of Pharmaceutical Sciences, 4
• From 01 Apr. 2023, To 31 Mar. 2024

  Reaearch Training(Integrated Genomics)

  8160, Year-long, Faculty of Pharmaceutical Sciences, 6
• From 01 Apr. 2023, To 31 Mar. 2024

  Genome Informatics

  C408, Spring, Faculty of Pharmaceutical Sciences, 2
• From 01 Apr. 2023, To 31 Mar. 2024

  Seminar in Medicinal Frontier Sciences

  2316, Year-long, Graduate School of Pharmaceutical Sciences, 2
• From 01 Apr. 2023, To 31 Mar. 2024

  Basic Laboratory Techniques in Biological Chemistry

  1207, Spring, Graduate School of Pharmaceutical Sciences, 2
• From 01 Apr. 2023, To 31 Mar. 2024

  Bioinformatics I: Target Discovery

  1113, Fall, Graduate School of Pharmaceutical Sciences, 2
• From 01 Apr. 2023, To 31 Mar. 2024

  Seminar on Critical Reading of Scientific Papers B

  8405, Year-long, Graduate School of Pharmaceutical Sciences, 2
• From 01 Apr. 2023, To 31 Mar. 2024

  Seminar on Critical Reading of Scientific Papers A

  8404, Year-long, Graduate School of Pharmaceutical Sciences, 2
• From 01 Apr. 2023, To 31 Mar. 2024

  Introduction to Bioinformatics for Drug Discovery

  8104, Spring, Graduate School of Pharmaceutical Sciences, 2
• From 01 Apr. 2022, To 31 Mar. 2023

  Advanced Course on Biological Science A

  9011, Spring, Graduate School of Science, 2
• From 01 Apr. 2022, To 31 Mar. 2023

  Research in Bioinformatics

  5201, Year-long, Graduate School of Pharmaceutical Sciences, 4
• From 01 Apr. 2022, To 31 Mar. 2023

  Seminar on Bioinformatics IA

  9061, Spring, Graduate School of Science, 1
• From 01 Apr. 2022, To 31 Mar. 2023

  Laboratory Practice in Medicinal Frontier Sciences

  4213, Year-long, Graduate School of Pharmaceutical Sciences, 1
• From 01 Apr. 2022, To 31 Mar. 2023

  Pharmaceutical Laboratory Coaching Practice A

  8301, Year-long, Graduate School of Pharmaceutical Sciences, 1
• From 01 Apr. 2022, To 31 Mar. 2023

  Medical Frontier Science Research A

  8406, Year-long, Graduate School of Pharmaceutical Sciences, 4
• From 01 Apr. 2022, To 31 Mar. 2023

  Advanced Methods in Bioinformatics

  7006, Year-long, Graduate School of Pharmaceutical Sciences, 2
• From 01 Apr. 2022, To 31 Mar. 2023

  Bioinformatics

  9136, Spring, Graduate School of Science, 2
• From 01 Apr. 2022, To 31 Mar. 2023

  Seminar on Critical Reading of Scientific Papers A

  8404, Year-long, Graduate School of Pharmaceutical Sciences, 2
• From 01 Apr. 2022, To 31 Mar. 2023

  Reaearch Training(Integrated Genomics)

  D160, Year-long, Faculty of Pharmaceutical Sciences, 10
• From 01 Apr. 2022, To 31 Mar. 2023

  Seminar on Bioinformatics IC

  9063, Spring, Graduate School of Science, 1
• From 01 Apr. 2022, To 31 Mar. 2023

  Seminar on Bioinformatics IIC

  9067, Spring, Graduate School of Science, 1
• From 01 Apr. 2022, To 31 Mar. 2023

  Seminar on Bioinformatics ID

  9064, Fall, Graduate School of Science, 1
• From 01 Apr. 2022, To 31 Mar. 2023

  Seminar on Bioinformatics IIB

  9066, Fall, Graduate School of Science, 1
• From 01 Apr. 2022, To 31 Mar. 2023

  Seminar on Bioinformatics IB

  9062, Fall, Graduate School of Science, 1
• From 01 Apr. 2022, To 31 Mar. 2023

  Research Proposal Writing Practice A

  8402, Year-long, Graduate School of Pharmaceutical Sciences, 1
• From 01 Apr. 2022, To 31 Mar. 2023

  Introduction to Biophysics

  N488, Spring, Institute for Liberal Arts and Sciences, 2
• From 01 Apr. 2022, To 31 Mar. 2023

  Reaearch Training(Integrated Genomics)

  8160, Year-long, Faculty of Pharmaceutical Sciences, 6
• From 01 Apr. 2022, To 31 Mar. 2023

  Skill Development for Bioinformatics

  5001, Year-long, Graduate School of Pharmaceutical Sciences, 4
• From 01 Apr. 2022, To 31 Mar. 2023

  Research in Medicinal Frontier Sciences

  3215, Year-long, Graduate School of Pharmaceutical Sciences, 4
• From 01 Apr. 2022, To 31 Mar. 2023

  Seminar in Medicinal Frontier Sciences

  2316, Year-long, Graduate School of Pharmaceutical Sciences, 2
• From 01 Apr. 2022, To 31 Mar. 2023

  Research in Bioinformatics

  7004, Year-long, Graduate School of Pharmaceutical Sciences, 4
• From 01 Apr. 2022, To 31 Mar. 2023

  Research in Bioinformatics

  7004, Year-long, Graduate School of Pharmaceutical Sciences, 4
• From 01 Apr. 2022, To 31 Mar. 2023

  Advanced Methods in Bioinformatics

  5401, Year-long, Graduate School of Pharmaceutical Sciences, 2
• From 01 Apr. 2022, To 31 Mar. 2023

  Introduction to Bioinformatics for Drug Discovery

  8104, Spring, Graduate School of Pharmaceutical Sciences, 2
• From 01 Apr. 2022, To 31 Mar. 2023

  Bioinformatics

  3768, Spring, Faculty of Science, 2
• From 01 Apr. 2022, To 31 Mar. 2023

  Seminar on Bioinformatics IIA

  9065, Spring, Graduate School of Science, 1
• From 01 Apr. 2022, To 31 Mar. 2023

  Seminar on Bioinformatics IID

  9068, Fall, Graduate School of Science, 1
• From Apr. 2014, To Mar. 2015

  Bioinformatics : Advanced Course A

  Spring, 理学研究科
• From Apr. 2014, To Mar. 2015

  Bioinformatics : Advanced Course B

  Fall, 理学研究科
• From Apr. 2015, To Mar. 2016

  Bioinformatics

  Spring, 理学部
• From Apr. 2015, To Mar. 2016

  Seminar on Bioinformatics IA

  Spring, 理学研究科
• From Apr. 2015, To Mar. 2016

  Seminar on Bioinformatics IB

  Fall, 理学研究科
• From Apr. 2015, To Mar. 2016

  Seminar on Bioinformatics IC

  Spring, 理学研究科
• From Apr. 2015, To Mar. 2016

  Seminar on Bioinformatics ID

  Fall, 理学研究科
• From Apr. 2015, To Mar. 2016

  Seminar on Bioinformatics IIA

  Spring, 理学研究科
• From Apr. 2015, To Mar. 2016

  Seminar on Bioinformatics IIB

  Fall, 理学研究科
• From Apr. 2015, To Mar. 2016

  Seminar on Bioinformatics IIC

  Spring, 理学研究科
• From Apr. 2015, To Mar. 2016

  Seminar on Bioinformatics IID

  Fall, 理学研究科
• From Apr. 2015, To Mar. 2016

  Skill Development for Bioinformatics

  Year-long, 薬学研究科
• From Apr. 2015, To Mar. 2016

  Reaearch Training(Integrated Genomics)

  Year-long, 薬学部
• From Apr. 2015, To Mar. 2016

  Bioinformatics : Advanced Course A

  Spring, 理学研究科
• From Apr. 2015, To Mar. 2016

  Bioinformatics : Advanced Course B

  Fall, 理学研究科
• From Apr. 2015, To Mar. 2016

  Bioinformatics I: Target Discovery

  Fall, 薬学研究科
• From Apr. 2015, To Mar. 2016

  Genome Science

  Fall, 理学部
• From Apr. 2015, To Mar. 2016

  Advanced Methods in Bioinformatics

  Year-long, 薬学研究科
• From Apr. 2015, To Mar. 2016

  Advanced Methods in Bioinformatics

  Year-long, 薬学研究科
• From Apr. 2015, To Mar. 2016

  Research in Bioinformatics

  Year-long, 薬学研究科
• From Apr. 2015, To Mar. 2016

  Research in Bioinformatics

  Year-long, 薬学研究科
• From Apr. 2016, To Mar. 2017

  Bioinformatics

  Spring, 理学部
• From Apr. 2016, To Mar. 2017

  Seminar on Bioinformatics IA

  Spring, 理学研究科
• From Apr. 2016, To Mar. 2017

  Seminar on Bioinformatics IB

  Fall, 理学研究科
• From Apr. 2016, To Mar. 2017

  Seminar on Bioinformatics IC

  Spring, 理学研究科
• From Apr. 2016, To Mar. 2017

  Seminar on Bioinformatics ID

  Fall, 理学研究科
• From Apr. 2016, To Mar. 2017

  Seminar on Bioinformatics IIA

  Spring, 理学研究科
• From Apr. 2016, To Mar. 2017

  Seminar on Bioinformatics IIB

  Fall, 理学研究科
• From Apr. 2016, To Mar. 2017

  Seminar on Bioinformatics IIC

  Spring, 理学研究科
• From Apr. 2016, To Mar. 2017

  Seminar on Bioinformatics IID

  Fall, 理学研究科
• From Apr. 2016, To Mar. 2017

  Skill Development for Bioinformatics

  Year-long, 薬学研究科
• From Apr. 2016, To Mar. 2017

  Reaearch Training(Integrated Genomics)

  Year-long, 薬学部
• From Apr. 2016, To Mar. 2017

  Bioinformatics : Advanced Course A

  Spring, 理学研究科
• From Apr. 2016, To Mar. 2017

  Bioinformatics : Advanced Course B

  Fall, 理学研究科
• From Apr. 2016, To Mar. 2017

  Genome Science

  Fall, 理学部
• From Apr. 2016, To Mar. 2017

  Advanced Methods in Bioinformatics

  Year-long, 薬学研究科
• From Apr. 2016, To Mar. 2017

  Advanced Methods in Bioinformatics

  Year-long, 薬学研究科
• From Apr. 2016, To Mar. 2017

  Research in Bioinformatics

  Year-long, 薬学研究科
• From Apr. 2016, To Mar. 2017

  Research in Bioinformatics

  Year-long, 薬学研究科
• From Apr. 2017, To Mar. 2018

  Bioinformatics

  Spring, 理学研究科
• From Apr. 2017, To Mar. 2018

  Bioinformatics

  Spring, 理学部
• From Apr. 2017, To Mar. 2018

  Seminar on Bioinformatics IA

  Spring, 理学研究科
• From Apr. 2017, To Mar. 2018

  Seminar on Bioinformatics IB

  Fall, 理学研究科
• From Apr. 2017, To Mar. 2018

  Seminar on Bioinformatics IC

  Spring, 理学研究科
• From Apr. 2017, To Mar. 2018

  Seminar on Bioinformatics ID

  Fall, 理学研究科
• From Apr. 2017, To Mar. 2018

  Seminar on Bioinformatics IIA

  Spring, 理学研究科
• From Apr. 2017, To Mar. 2018

  Seminar on Bioinformatics IIB

  Fall, 理学研究科
• From Apr. 2017, To Mar. 2018

  Seminar on Bioinformatics IIC

  Spring, 理学研究科
• From Apr. 2017, To Mar. 2018

  Seminar on Bioinformatics IID

  Fall, 理学研究科
• From Apr. 2017, To Mar. 2018

  Skill Development for Bioinformatics

  Year-long, 薬学研究科
• From Apr. 2017, To Mar. 2018

  Reaearch Training(Integrated Genomics)

  Year-long, 薬学部
• From Apr. 2017, To Mar. 2018

  Bioinformatics : Advanced Course A

  Spring, 理学研究科
• From Apr. 2017, To Mar. 2018

  Bioinformatics : Advanced Course B

  Fall, 理学研究科
• From Apr. 2017, To Mar. 2018

  Bioinformatics I: Target Discovery

  Fall, 薬学研究科
• From Apr. 2017, To Mar. 2018

  Genome Science

  Fall, 理学部
• From Apr. 2017, To Mar. 2018

  Advanced Methods in Bioinformatics

  Year-long, 薬学研究科
• From Apr. 2017, To Mar. 2018

  Research in Bioinformatics

  Year-long, 薬学研究科
• From Apr. 2017, To Mar. 2018

  Advanced Lectures : Integrative Biological Diversity

  Spring, 理学研究科
• From Apr. 2017, To Mar. 2018

  Introduction to Pharmaceutical Sciences and Ethics

  Spring, 全学共通科目
• From Apr. 2018, To Mar. 2019

  Bioinformatics

  Spring, 理学研究科
• From Apr. 2018, To Mar. 2019

  Bioinformatics

  Spring, 理学部
• From Apr. 2018, To Mar. 2019

  Seminar on Bioinformatics IA

  Spring, 理学研究科
• From Apr. 2018, To Mar. 2019

  Seminar on Bioinformatics IB

  Fall, 理学研究科
• From Apr. 2018, To Mar. 2019

  Seminar on Bioinformatics IC

  Spring, 理学研究科
• From Apr. 2018, To Mar. 2019

  Seminar on Bioinformatics ID

  Fall, 理学研究科
• From Apr. 2018, To Mar. 2019

  Seminar on Bioinformatics IIA

  Spring, 理学研究科
• From Apr. 2018, To Mar. 2019

  Seminar on Bioinformatics IIB

  Fall, 理学研究科
• From Apr. 2018, To Mar. 2019

  Seminar on Bioinformatics IIC

  Spring, 理学研究科
• From Apr. 2018, To Mar. 2019

  Seminar on Bioinformatics IID

  Fall, 理学研究科
• From Apr. 2018, To Mar. 2019

  Skill Development for Bioinformatics

  Year-long, 薬学研究科
• From Apr. 2018, To Mar. 2019

  Reaearch Training(Integrated Genomics)

  Year-long, 薬学部
• From Apr. 2018, To Mar. 2019

  Introduction to Biophysics

  Spring, 全学共通科目
• From Apr. 2018, To Mar. 2019

  Genome Science

  Fall, 理学部
• From Apr. 2018, To Mar. 2019

  Advanced Methods in Bioinformatics

  Year-long, 薬学研究科
• From Apr. 2018, To Mar. 2019

  Research in Bioinformatics

  Year-long, 薬学研究科
• From Apr. 2018, To Mar. 2019

  Research in Bioinformatics

  Year-long, 薬学研究科
• From Apr. 2018, To Mar. 2019

  Introduction to Pharmaceutical Sciences and Ethics

  Spring, 全学共通科目
• From Apr. 2019, To Mar. 2020

  Bioinformatics

  Spring, 理学研究科
• From Apr. 2019, To Mar. 2020

  Bioinformatics

  Spring, 理学部
• From Apr. 2019, To Mar. 2020

  Seminar on Bioinformatics IA

  Spring, 理学研究科
• From Apr. 2019, To Mar. 2020

  Seminar on Bioinformatics IB

  Fall, 理学研究科
• From Apr. 2019, To Mar. 2020

  Seminar on Bioinformatics IC

  Spring, 理学研究科
• From Apr. 2019, To Mar. 2020

  Seminar on Bioinformatics ID

  Fall, 理学研究科
• From Apr. 2019, To Mar. 2020

  Seminar on Bioinformatics IIA

  Spring, 理学研究科
• From Apr. 2019, To Mar. 2020

  Seminar on Bioinformatics IIB

  Fall, 理学研究科
• From Apr. 2019, To Mar. 2020

  Seminar on Bioinformatics IIC

  Spring, 理学研究科
• From Apr. 2019, To Mar. 2020

  Seminar on Bioinformatics IID

  Fall, 理学研究科
• From Apr. 2019, To Mar. 2020

  Skill Development for Bioinformatics

  Year-long, 薬学研究科
• From Apr. 2019, To Mar. 2020

  Reaearch Training(Integrated Genomics)

  Year-long, 薬学部
• From Apr. 2019, To Mar. 2020

  Bioinformatics :Advanced Course

  Fall, 理学研究科
• From Apr. 2019, To Mar. 2020

  Bioinformatics I: Target Discovery

  Fall, 薬学研究科
• From Apr. 2019, To Mar. 2020

  Introduction to Biophysics

  Spring, 全学共通科目
• From Apr. 2019, To Mar. 2020

  Genome Science

  Fall, 理学部
• From Apr. 2019, To Mar. 2020

  Advanced Methods in Bioinformatics

  Spring, 薬学研究科
• From Apr. 2019, To Mar. 2020

  Advanced Methods in Bioinformatics

  Fall, 薬学研究科
• From Apr. 2019, To Mar. 2020

  Advanced Methods in Bioinformatics

  Year-long, 薬学研究科
• From Apr. 2019, To Mar. 2020

  Research in Bioinformatics

  Spring, 薬学研究科
• From Apr. 2019, To Mar. 2020

  Research in Bioinformatics

  Fall, 薬学研究科
• From Apr. 2019, To Mar. 2020

  Research in Bioinformatics

  Year-long, 薬学研究科
• From Apr. 2019, To Mar. 2020

  Introduction to Pharmaceutical Sciences and Ethics

  Spring, 全学共通科目
• From Apr. 2020, To Mar. 2021

  Bioinformatics

  Spring, 理学研究科
• From Apr. 2020, To Mar. 2021

  Bioinformatics

  Spring, 理学部
• From Apr. 2020, To Mar. 2021

  Seminar on Bioinformatics IA

  Spring, 理学研究科
• From Apr. 2020, To Mar. 2021

  Seminar on Bioinformatics IB

  Fall, 理学研究科
• From Apr. 2020, To Mar. 2021

  Seminar on Bioinformatics IC

  Spring, 理学研究科
• From Apr. 2020, To Mar. 2021

  Seminar on Bioinformatics ID

  Fall, 理学研究科
• From Apr. 2020, To Mar. 2021

  Seminar on Bioinformatics IIA

  Spring, 理学研究科
• From Apr. 2020, To Mar. 2021

  Seminar on Bioinformatics IIB

  Fall, 理学研究科
• From Apr. 2020, To Mar. 2021

  Seminar on Bioinformatics IIC

  Spring, 理学研究科
• From Apr. 2020, To Mar. 2021

  Seminar on Bioinformatics IID

  Fall, 理学研究科
• From Apr. 2020, To Mar. 2021

  Skill Development for Bioinformatics

  Year-long, 薬学研究科
• From Apr. 2020, To Mar. 2021

  Reaearch Training(Integrated Genomics)

  Year-long, 薬学部
• From Apr. 2020, To Mar. 2021

  Introduction to Biophysics

  Spring, 全学共通科目
• From Apr. 2020, To Mar. 2021

  Advanced Course on Biological Science A

  Spring, 理学研究科
• From Apr. 2020, To Mar. 2021

  Advanced Methods in Bioinformatics

  Year-long, 薬学研究科
• From Apr. 2020, To Mar. 2021

  Advanced Methods in Bioinformatics

  Spring, 薬学研究科
• From Apr. 2020, To Mar. 2021

  Advanced Methods in Bioinformatics

  Fall, 薬学研究科
• From Apr. 2020, To Mar. 2021

  Research in Bioinformatics

  Year-long, 薬学研究科
• From Apr. 2020, To Mar. 2021

  Research in Bioinformatics

  Spring, 薬学研究科
• From Apr. 2020, To Mar. 2021

  Research in Bioinformatics

  Fall, 薬学研究科
• From Apr. 2021, To Mar. 2022

  Bioinformatics

  Spring, 理学研究科
• From Apr. 2021, To Mar. 2022

  Bioinformatics

  Spring, 理学部
• From Apr. 2021, To Mar. 2022

  Seminar on Bioinformatics IA

  Spring, 理学研究科
• From Apr. 2021, To Mar. 2022

  Seminar on Bioinformatics IB

  Fall, 理学研究科
• From Apr. 2021, To Mar. 2022

  Seminar on Bioinformatics IC

  Spring, 理学研究科
• From Apr. 2021, To Mar. 2022

  Seminar on Bioinformatics ID

  Fall, 理学研究科
• From Apr. 2021, To Mar. 2022

  Seminar on Bioinformatics IIA

  Spring, 理学研究科
• From Apr. 2021, To Mar. 2022

  Seminar on Bioinformatics IIB

  Fall, 理学研究科
• From Apr. 2021, To Mar. 2022

  Seminar on Bioinformatics IIC

  Spring, 理学研究科
• From Apr. 2021, To Mar. 2022

  Seminar on Bioinformatics IID

  Fall, 理学研究科
• From Apr. 2021, To Mar. 2022

  Skill Development for Bioinformatics

  Year-long, 薬学研究科
• From Apr. 2021, To Mar. 2022

  Reaearch Training(Integrated Genomics)

  Year-long, 薬学部
• From Apr. 2021, To Mar. 2022

  Reaearch Training(Integrated Genomics)

  Year-long, 薬学部
• From Apr. 2021, To Mar. 2022

  Bioinformatics :Advanced Course

  Fall, 理学研究科
• From Apr. 2021, To Mar. 2022

  Bioinformatics I: Target Discovery

  Fall, 薬学研究科
• From Apr. 2021, To Mar. 2022

  Introduction to Biophysics

  Spring, 全学共通科目
• From Apr. 2021, To Mar. 2022

  Advanced Course on Biological Science A

  Spring, 理学研究科
• From Apr. 2021, To Mar. 2022

  Advanced Methods in Bioinformatics

  Year-long, 薬学研究科
• From Apr. 2021, To Mar. 2022

  Advanced Methods in Bioinformatics

  Spring, 薬学研究科
• From Apr. 2021, To Mar. 2022

  Advanced Methods in Bioinformatics

  Year-long, 薬学研究科
• From Apr. 2021, To Mar. 2022

  Research in Bioinformatics

  Year-long, 薬学研究科
• From Apr. 2021, To Mar. 2022

  Research in Bioinformatics

  Spring, 薬学研究科
• From Apr. 2021, To Mar. 2022

  Research in Bioinformatics

  Year-long, 薬学研究科