Predicting global distributions of eukaryotic plankton communities from satellite data
Hiroto Kaneko; Hisashi Endo; Nicolas Henry; Cédric Berney; Frédéric Mahé; Julie Poulain; Karine Labadie; Odette Beluche; Roy El Hourany; Silvia G. Acinas; Marcel Babin; Peer Bork; Chris Bowler; Guy Cochrane; Colomban de Vargas; Gabriel Gorsky; Lionel Guidi; Nigel Grimsley; Pascal Hingamp; Daniele Iudicone; Olivier Jaillon; Stefanie Kandels; Eric Karsenti; Fabrice Not; Nicole Poulton; Stéphane Pesant; Christian Sardet; Sabrina Speich; Lars Stemmann; Matthew B. Sullivan; Shinichi Sunagawa; Samuel Chaffron; Patrick Wincker; Ryosuke Nakamura; Lee Karp-Boss; Emmanuel Boss; Chris Bowler; Colomban de Vargas; Kentaro Tomii; Hiroyuki Ogata
Create a new family (“Mamonoviridae”), a genus (“Medusavirus”), and two species (“Medusavirus medusae” and “Medusavirus sthenus”) in the phylum Nucleocytoviricota.
Zhang R; Takemura M; Murata K; Ogata H
ICTV Taxonomic Proposal, 2023年, 査読有り, 最終著者
“Mamonoviridae”, a proposed new family of the phylum Nucleocytoviricota
Insights into biotic and abiotic modulation of ocean mesopelagic communities
Janaina Rigonato; Marko Budinich; Alej; ro A. Murillo; Manoela C. Br; {\~{a } }o; Juan J. Pierella Karlusich; Yawouvi Dodji Soviadan; Ann C. Gregory; Hisashi Endo; Florian Kokoszka; Dean Vik; Nicolas Henry; Paul Fr{\'{e } }mont; Karine Labadie; Ahmed A. Zayed; C{\'{e } }line Dimier; Marc Picheral; Sarah Searson; Julie Poulain; Stefanie K; els; St{\'{e } }phane Pesant; Eric Karsenti; Peer Bork; Chris Bowler; Samuel Chaffron; Colomban de Vargas; Damien Eveillard; Marion Gehlen; Daniele Iudicone; Fabien Lombard; Hiroyuki Ogata; Lars Stemmann; Matthew B. Sullivan; Shinichi Sunagawa; Patrick Wincker; Olivier Jaillon
2021年02月27日
Locality and diel cycling of viral production revealed by a 24 h time course cross-omics analysis in a coastal region of Japan
Diversity and ecological footprint of Global Ocean RNA viruses
Guillermo Dominguez-Huerta; Ahmed A. Zayed; James M. Wainaina; Jiarong Guo; Funing Tian; Akbar Adjie Pratama; Benjamin Bolduc; Mohamed Mohssen; Olivier Zablocki; Eric Pelletier; Erwan Delage; Adriana Alberti; Jean-Marc Aury; Quentin Carradec; Corinne da Silva; Karine Labadie; Julie Poulain; Chris Bowler; Damien Eveillard; Lionel Guidi; Eric Karsenti; Jens H. Kuhn; Hiroyuki Ogata; Patrick Wincker; Alexander Culley; Samuel Chaffron; Matthew B. Sullivan
Science, 2022年06月10日, 査読有り
Cryptic and abundant marine viruses at the evolutionary origins of Earth’s RNA virome
Ahmed A. Zayed; James M. Wainaina; Guillermo Dominguez-Huerta; Eric Pelletier; Jiarong Guo; Mohamed Mohssen; Funing Tian; Akbar Adjie Pratama; Benjamin Bolduc; Olivier Zablocki; Dylan Cronin; Lindsey Solden; Erwan Delage; Adriana Alberti; Jean-Marc Aury; Quentin Carradec; Corinne da Silva; Karine Labadie; Julie Poulain; Hans-Joachim Ruscheweyh; Guillem Salazar; Elan Shatoff; Ralf Bundschuh; Kurt Fredrick; Laura S. Kubatko; Samuel Chaffron; Alexander I. Culley; Shinichi Sunagawa; Jens H. Kuhn; Patrick Wincker; Matthew B. Sullivan; Silvia G. Acinas; Marcel Babin; Peer Bork; Emmanuel Boss; Chris Bowler; Guy Cochrane; Colomban de Vargas; Gabriel Gorsky; Lionel Guidi; Nigel Grimsley; Pascal Hingamp; Daniele Iudicone; Olivier Jaillon; Stefanie Kandels; Lee Karp-Boss; Eric Karsenti; Fabrice Not; Hiroyuki Ogata; Nicole Poulton; Stéphane Pesant; Christian Sardet; Sabrinia Speich; Lars Stemmann; Matthew B. Sullivan; Shinichi Sungawa; Patrick Wincker
Science, 2022年04月08日, 査読有り
Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems
Daniel J. Richter; Romain Watteaux; Thomas Vannier; Jade Leconte; Paul Frémont; Gabriel Reygondeau; Nicolas Maillet; Nicolas Henry; Gaëtan Benoit; Ophélie Da Silva; Tom O. Delmont; Antonio Fernàndez-Guerra; Samir Suweis; Romain Narci; Cédric Berney; Damien Eveillard; Frederick Gavory; Lionel Guidi; Karine Labadie; Eric Mahieu; Julie Poulain; Sarah Romac; Simon Roux; Céline Dimier; Stefanie Kandels; Marc Picheral; Sarah Searson; Stéphane Pesant; Jean-Marc Aury; Jennifer R. Brum; Claire Lemaitre; Eric Pelletier; Peer Bork; Shinichi Sunagawa; Fabien Lombard; Lee Karp-Boss; Chris Bowler; Matthew B. Sullivan; Eric Karsenti; Mahendra Mariadassou; Ian Probert; Pierre Peterlongo; Patrick Wincker; Colomban de Vargas; Maurizio Ribera d’Alcalà; Daniele Iudicone; Olivier Jaillon
2022年08月03日, 査読有り
The Ocean Gene Atlas v2.0: online exploration of the biogeography and phylogeny of plankton genes
Caroline Vernette; Julien Lecubin; Pablo Sánchez; Silvia G Acinas; Marcel Babin; Peer Bork; Emmanuel Boss; Chris Bowler; Guy Cochrane; Colomban de Vargas; Gabriel Gorsky; Lionel Guidi; Nigel Grimsley; Pascal Hingamp1; Daniele Iudicone; Olivier Jaillon; Stefanie Kandels-Lewis; Lee Karp-Boss; Eric Karsenti; Fabrice Not; Hiroyuki Ogata; Nicole Poulton; Stéphane Pesant; Christian Sardet; Sabrina Speich; Lars Stemmann; Matthew B Sullivan; Shinichi Sunagawa; Patrick Wincker; Shinichi Sunagawa; Tom O Delmont; Silvia G Acinas; Eric Pelletier; Pascal Hingamp; Magali Lescot
Nucleic Acids Research, 2022年07月05日, 査読有り
Tight association between microbial eukaryote and giant virus communities in the Arctic Ocean
Functional repertoire convergence of distantly related eukaryotic plankton lineages abundant in the sunlit ocean
Tom O. Delmont; Morgan Gaia; Damien D. Hinsinger; Paul Frémont; Chiara Vanni; Antonio Fernandez-Guerra; A. Murat Eren; Artem Kourlaiev; Leo d'Agata; Quentin Clayssen; Emilie Villar; Karine Labadie; Corinne Cruaud; Julie Poulain; Corinne Da Silva; Marc Wessner; Benjamin Noel; Jean-Marc Aury; Colomban de Vargas; Chris Bowler; Eric Karsenti; Eric Pelletier; Patrick Wincker; Olivier Jaillon; Shinichi Sunagawa; Silvia G. Acinas; Peer Bork; Eric Karsenti; Chris Bowler; Christian Sardet; Lars Stemmann; Colomban de Vargas; Patrick Wincker; Magali Lescot; Marcel Babin; Gabriel Gorsky; Nigel Grimsley; Lionel Guidi; Pascal Hingamp; Olivier Jaillon; Stefanie Kandels; Daniele Iudicone; Hiroyuki Ogata; Stéphane Pesant; Matthew B. Sullivan; Fabrice Not; Karp-Boss Lee; Emmanuel Boss; Guy Cochrane; Michael Follows; Nicole Poulton; Jeroen Raes; Mike Sieracki; Sabrina Speich
Cell Genomics, 2022年05月11日, 査読有り
Integrative analysis of gut microbiome and host transcriptomes reveals associations between treatment outcomes and immunotherapy‐induced colitis
Toshiharu Sakurai; Marco A De Velasco; Kazuko Sakai; Tomoyuki Nagai; Hiroki Nishiyama; Kentaro Hashimoto; Hirotsugu Uemura; Hisato Kawakami; Kazuhiko Nakagawa; Hiroyuki Ogata; Kazuto Nishio; Masatoshi Kudo
Molecular Oncology, 2022年04月04日, 査読有り
Giant Viruses Encode Actin-Related Proteins
Violette Da Cunha; Morgan Gaia; Hiroyuki Ogata; Olivier Jaillon; Tom O Delmont; Patrick Forterre
Molecular Biology and Evolution, 2022年02月03日, 査読有り
Adaptive evolution of viruses infecting marine microalgae (haptophytes), from acute infections to stable coexistence
Ruth‐Anne Sandaa; Marius R. Saltvedt; Håkon Dahle; Haina Wang; Selina Våge; Romain Blanc‐Mathieu; Ida H. Steen; Nigel Grimsley; Bente Edvardsen; Hiroyuki Ogata; Janice Lawrence
Biological Reviews, 2021年09月, 査読有り
Compendium of 530 metagenome-assembled bacterial and archaeal genomes from the polar Arctic Ocean
Marta Royo-Llonch; Pablo Sánchez; Clara Ruiz-González; Guillem Salazar; Carlos Pedrós-Alió; Marta Sebastián; Karine Labadie; Lucas Paoli; Federico M. Ibarbalz; Lucie Zinger; Benjamin Churcheward; Marcel Babin; Peer Bork; Emmanuel Boss; Guy Cochrane; Colomban de Vargas; Gabriel Gorsky; Nigel Grimsley; Lionel Guidi; Pascal Hingamp; Daniele Iudicone; Olivier Jaillon; Stefanie Kandels; Fabrice Not; Hiroyuki Ogata; Stéphane Pesant; Nicole Poulton; Jeroen Raes; Christian Sardet; Sabrina Speich; Lars Setmmann; Matthew B. Sullivan; Samuel Chaffron; Damien Eveillard; Eric Karsenti; Shinichi Sunagawa; Patrick Wincker; Lee Karp-Boss; Chris Bowler; Silvia G. Acinas
Nature Microbiology, 2021年12月, 査読有り
RNA Sequencing of Medusavirus Suggests Remodeling of the Host Nuclear Environment at an Early Infection Stage
International Journal of Molecular Sciences, 2021年05月31日, 査読有り, 責任著者
Multiple mutations in RNA polymerase β-subunit gene (rpoB) in Streptomyces incarnatus NRRL8089 enhance production of antiviral antibiotic sinefungin: modeling rif cluster region by density functional theory
Eukaryotic virus composition can predict the efficiency of carbon export in the global ocean
Hiroto Kaneko; Romain Blanc-Mathieu; Hisashi Endo; Samuel Chaffron; Tom O. Delmont; Morgan Gaia; Nicolas Henry; Rodrigo Hernández-Velázquez; Canh Hao Nguyen; Hiroshi Mamitsuka; Patrick Forterre; Olivier Jaillon; Colomban de Vargas; Matthew B. Sullivan; Curtis A. Suttle; Lionel Guidi; Hiroyuki Ogata
iScience, 2021年01月, 査読有り, 最終著者
Mucosal microbiota and gene expression are associated with long-term remission after discontinuation of adalimumab in ulcerative colitis
Toshiharu Sakurai; Hiroki Nishiyama; Kazuko Sakai; Marco A. De Velasco; Tomoyuki Nagai; Yoriaki Komeda; Hiroshi Kashida; Akiyoshi Okada; Isao Kawai; Kazuto Nishio; Hiroyuki Ogata; Masatoshi Kudo
Scientific Reports, 2020年12月
Deficiency of Gankyrin in the small intestine is associated with augmented colitis accompanied by altered bacterial composition of intestinal microbiota
Tara Oceans: towards global ocean ecosystems biology
Shinichi Sunagawa; Silvia G. Acinas; Peer Bork; Chris Bowler; Damien Eveillard; Gabriel Gorsky; Lionel Guidi; Daniele Iudicone; Eric Karsenti; Fabien Lombard; Hiroyuki Ogata; Stephane Pesant; Matthew B. Sullivan; Patrick Wincker; Colomban de Vargas
Minimum Information about Uncultivated Virus Genomes (MIUViG): a community consensus on standards and best practices for describing genome sequences from uncultivated viruses.
Single-cell genomics of multiple uncultured stramenopiles reveals underestimated functional diversity across oceans
Yoann Seeleuthner; Samuel Mondy; Vincent Lombard; Quentin Carradec; Eric Pelletier; Marc Wessner; Jade Leconte; Jean-François Mangot; Julie Poulain; Karine Labadie; Ramiro Logares; Shinichi Sunagawa; Véronique De Berardinis; Marcel Salanoubat; Céline Dimier; Stefanie Kandels-Lewis; Marc Picheral; Sarah Searson; Silvia G. Acinas; Emmanuel Boss; Michael Follows; Gabriel Gorsky; Nigel Grimsley; Lee Karp-Boss; Uros Krzic; Fabrice Not; Hiroyuki Ogata; Jeroen Raes; Emmanuel G. Reynaud; Christian Sardet; Sabrina Speich; Lars Stemmann; Didier Velayoudon; Jean Weissenbach; Stephane Pesant; Nicole Poulton; Ramunas Stepanauskas; Peer Bork; Chris Bowler; Pascal Hingamp; Matthew B. Sullivan; Daniele Iudicone; Ramon Massana; Jean-Marc Aury; Bernard Henrissat; Eric Karsenti; Olivier Jaillon; Mike Sieracki; Colomban De Vargas; Patrick Wincker
Nature Communications, 2018年12月01日, 査読有り
Diatom diversity through HTS-metabarcoding in coastal European seas.
Piredda R; Claverie J.-M; Decelle J; de Vargas C; Dunthorn M; Edvardsen B; Eikrem W; Forster D; Kooistra W.H.C.F; Logares R; Massana R; Montresor M; Not F; Ogata H; Pawlowski J; Romac S; Sarno D; Stoeck T; Zingone A
Sci. Rep., 2018年12月, 査読有り
Degenerate PCR primers to reveal the diversity of giant viruses in coastal waters.
Li Y; Hingamp P; Watai H; Endo H; Yoshida T; Ogata H
Viruses, 2018年09月, 査読有り
MAPLE 2.3.0: an improved system for evaluating the functionomes of genomes and metagenomes.
Minimum Information about Uncultivated Virus Genomes (MIUViG): a community consensus on standards and best practices for describing genome sequences from uncultivated viruses.
Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition
Adriana Alberti; Julie Poulain; Stefan Engelen; Karine Labadie; Sarah Romac; Isabel Ferrera; Guillaume Albini; Jean-Marc Aury; Caroline Belser; Alexis Bertrand; Corinne Cruaud; Corinne Da Silva; Carole Dossat; Frederick Gavory; Shahinaz Gas; Julie Guy; Maud Haquelle; E'krame Jacoby; Olivier Jaillon; Arnaud Lemainque; Eric Pelletier; Gaelle Samson; Mark Wessner; Silvia G. Acinas; Marta Royo-Llonch; Francisco M. Cornejo-Castillo; Ramiro Logares; Beatriz Fernandez-Gomez; Chris Bowler; Guy Cochrane; Clara Amid; Petra Ten Hoopen; Colomban De Vargas; Nigel Grimsley; Elodie Desgranges; Stefanie Kandels-Lewis; Hiroyuki Ogata; Nicole Poulton; Michael E. Sieracki; Ramunas Stepanauskas; Matthew B. Sullivan; Jennifer R. Brum; Melissa B. Duhaime; Bonnie T. Poulos; Bonnie L. Hurwitz; Stephane Pesant; Eric Karsenti; Patrick Wincker
Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses
Simon Roux; Jennifer R. Brum; Bas E. Dutilh; Shinichi Sunagawa; Melissa B. Duhaime; Alexander Loy; Bonnie T. Poulos; Natalie Solonenko; Elena Lara; Julie Poulain; Stephane Pesant; Stefanie Kandels-Lewis; Celine Dimier; Marc Picheral; Sarah Searson; Corinne Cruaud; Adriana Alberti; Carlos M. Duarte; Josep M. Gasol; Dolors Vaque; Peer Bork; Silvia G. Acinas; Patrick Wincker; Matthew B. Sullivan
NATURE, 2016年09月, 査読有り
Benthic protists: the under-charted majority
Dominik Forster; Micah Dunthorn; Frederic Mahe; John R. Dolan; Stephane Audic; David Bass; Lucie Bittner; Christophe Boutte; Richard Christen; Jean-Michel Claverie; Johan Decelle; Bente Edvardsen; Elianne Egge; Wenche Eikrem; Angelique Gobet; Wiebe H. C. F. Kooistra; Ramiro Logares; Ramon Massana; Marina Montresor; Fabrice Not; Hiroyuki Ogata; Jan Pawlowski; Massimo C. Pernice; Sarah Romac; Kamran Shalchian-Tabrizi; Nathalie Simon; Thomas A. Richards; Sebastien Santini; Diana Sarno; Raffaele Siano; Daniel Vaulot; Patrick Wincker; Adriana Zingone; Colomban de Vargas; Thorsten Stoeck
FEMS MICROBIOLOGY ECOLOGY, 2016年08月, 査読有り
Two asian jumbo phages, phi RSL2 and phi RSF1, infect Ralstonia solanacearum and show common features of phi KZ-related phages
CURRENT OPINION IN MICROBIOLOGY, 2016年06月, 査読有り, 招待有り
Reverse transcriptase genes are highly abundant and transcriptionally active in marine plankton assemblages
Magali Lescot; Pascal Hingamp; Kenji K. Kojima; Emilie Villar; Sarah Romac; Alaguraj Veluchamy; Martine Boccara; Olivier Jaillon; Daniele Iudicone; Chris Bowler; Patrick Wincker; Jean-Michel Claverie; Hiroyuki Ogata
ISME JOURNAL, 2016年05月, 査読有り
Plankton networks driving carbon export in the oligotrophic ocean
Lionel Guidi; Samuel Chaffron; Lucie Bittner; Damien Eveillard; Abdelhalim Larhlimi; Simon Roux; Youssef Darzi; Stephane Audic; Leo Berline; Jennifer R. Brum; Luis Pedro Coelho; Julio Cesar Ignacio Espinoza; Shruti Malviya; Shinichi Sunagawa; Celine Dimier; Stefanie Kandels-Lewis; Marc Picheral; Julie Poulain; Sarah Searson; Lars Stemmann; Fabrice Not; Pascal Hingamp; Sabrina Speich; Mick Follows; Lee Karp-Boss; Emmanuel Boss; Hiroyuki Ogata; Stephane Pesant; Jean Weissenbach; Patrick Wincker; Silvia G. Acinas; Peer Bork; Colomban de Vargas; Daniele Iudicone; Matthew B. Sullivan; Jeroen Raes; Eric Karsenti; Chris Bowler; Gabriel Gorsky
Identification of a new oat beta-amylase by functional proteomics
Nihed Ben Halima; Bassem Khemakhem; Imen Fendri; Hiroyuki Ogata; Patrick Baril; Chantal Pichon; Slim Abdelkafi
BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS, 2016年01月, 査読有り
Deep sequencing of amplified Prasinovirus and host green algal genes from an Indian Ocean transect reveals interacting trophic dependencies and new genotypes
Camille Clerissi; Yves Desdevises; Sarah Romac; Stephane Audic; Colomban de Vargas; Silvia G. Acinas; Raffaella Casotti; Julie Poulain; Patrick Wincker; Pascal Hingamp; Hiroyuki Ogata; Nigel Grimsley
Marine protist diversity in European coastal waters and sediments as revealed by high-throughput sequencing
Ramon Massana; Angelique Gobet; Stephane Audic; David Bass; Lucie Bittner; Christophe Boutte; Aurelie Chambouvet; Richard Christen; Jean-Michel Claverie; Johan Decelle; John R. Dolan; Micah Dunthorn; Bente Edvardsen; Irene Forn; Dominik Forster; Laure Guillou; Olivier Jaillon; Wiebe H. C. F. Kooistra; Ramiro Logares; Frederic Mahe; Fabrice Not; Hiroyuki Ogata; Jan Pawlowski; Massimo C. Pernice; Ian Probert; Sarah Romac; Thomas Richards; Sebastien Santini; Kamran Shalchian-Tabrizi; Raffaele Siano; Nathalie Simon; Thorsten Stoeck; Daniel Vaulot; Adriana Zingone; Colomban de Vargas
ENVIRONMENTAL MICROBIOLOGY, 2015年10月, 査読有り
Evolution of Eukaryotic DNA Polymerases via Interaction Between Cells and Large DNA Viruses
Anna Kopf; Mesude Bicak; Renzo Kottmann; Julia Schnetzer; Ivaylo Kostadinov; Katja Lehmann; Antonio Fernandez-Guerra; Christian Jeanthon; Eyal Rahav; Matthias Ullrich; Antje Wichels; Gunnar Gerdts; Paraskevi Polymenakou; Giorgos Kotoulas; Rania Siam; Rehab Z. Abdallah; Eva C. Sonnenschein; Thierry Cariou; Fergal O'Gara; Stephen Jackson; Sandi Orlic; Michael Steinke; Julia Busch; Bernardo Duarte; Isabel Cacador; Joao Canning-Clode; Oleksandra Bobrova; Viggo Marteinsson; Eyjolfur Reynisson; Clara Magalhaes Loureiro; Gian Marco Luna; Grazia Marina Quero; Carolin R. Loescher; Anke Kremp; Marie E. DeLorenzo; Lise Ovreas; Jennifer Tolman; Julie LaRoche; Antonella Penna; Marc Frischer; Timothy Davis; Barker Katherine; Christopher P. Meyer; Sandra Ramos; Catarina Magalhaes; Florence Jude-Lemeilleur; Ma Leopoldina Aguirre-Macedo; Shiao Wang; Nicole Poulton; Scott Jones; Rachel Collin; Jed A. Fuhrman; Pascal Conan; Cecilia Alonso; Noga Stambler; Kelly Goodwin; Michael M. Yakimov; Federico Baltar; Levente Bodrossy; Jodie Van De Kamp; Dion M. F. Frampton; Martin Ostrowski; Paul Van Ruth; Paul Malthouse; Simon Claus; Klaas Deneudt; Jonas Mortelmans; Sophie Pitois; David Wallom; Ian Salter; Rodrigo Costa; Declan C. Schroeder; Mahrous M. Kandil; Valentina Amaral; Florencia Biancalana; Rafael Santana; Maria Luiza Pedrotti; Takashi Yoshida; Hiroyuki Ogata; Tim Ingleton; Kate Munnik; Naiara Rodriguez-Ezpeleta; Veronique Berteaux-Lecellier; Patricia Wecker; Ibon Cancio; Daniel Vaulot; Christina Bienhold; Hassan Ghazal; Bouchra Chaouni; Soumya Essayeh; Sara Ettamimi; El Houcine Zaid; Noureddine Boukhatem; Abderrahim Bouali; Rajaa Chahboune; Said Barrijal; Mohammed Timinouni; Fatima El Otmani; Mohamed Bennani; Marianna Mea; Nadezhda Todorova; Ventzislav Karamfilov; Petra ten Hoopen; Guy Cochrane; Stephane L'Haridon; Kemal Can Bizsel; Alessandro Vezzi; Federico M. Lauro; Patrick Martin; Rachelle M. Jensen; Jamie Hinks; Susan Gebbels; Riccardo Rosselli; Fabio De Pascale; Riccardo Schiavon; Antonina dos Santos; Emilie Villar; Stephane Pesant; Bruno Cataletto; Francesca Malfatti; Ranjith Edirisinghe; Jorge A. Herrera Silveira; Michele Barbier; Valentina Turk; Tinkara Tinta; Wayne J. Fuller; Ilkay Salihoglu; Nedime Serakinci; Mahmut Cerkez Ergoren; Eileen Bresnan; Juan Iriberri; Paul Anders Fronth Nyhus; Edvardsen Bente; Hans Erik Karlsen; Peter N. Golyshin; Josep M. Gasol; Snejana Moncheva; Nina Dzhembekova; Zackary Johnson; Christopher David Sinigalliano; Maribeth Louise Gidley; Adriana Zingone; Roberto Danovaro; George Tsiamis; Melody S. Clark; Ana Cristina Costa; Monia El Bour; Ana M. Martins; R. Eric Collins; Anne-Lise Ducluzeau; Jonathan Martinez; Mark J. Costello; Linda A. Amaral-Zettler; Jack A. Gilbert; Neil Davies; Dawn Field; Frank Oliver Gloeckner
GIGASCIENCE, 2015年06月, 査読有り
Life-cycle modification in open oceans accounts for genome variability in a cosmopolitan phytoplankton
Peter von Dassow; Uwe John; Hiroyuki Ogata; Ian Probert; El Mahdi Bendif; Jessica U. Kegel; Stephane Audic; Patrick Wincker; Corinne Da Silva; Jean-Michel Claverie; Scott Doney; David M. Glover; Daniella Mella Flores; Yeritza Herrera; Magali Lescot; Marie-Jose Garet-Delmas; Colomban de Vargas
ISME JOURNAL, 2015年06月, 査読有り
Draft genome sequence of four coccolithoviruses: Emiliania huxleyi virus EhV-88, EhV-201, EhV-207, and EhV-208.
Determinants of community structure in the global plankton interactome
Gipsi Lima-Mendez; Karoline Faust; Nicolas Henry; Johan Decelle; Sebastien Colin; Fabrizio Carcillo; Samuel Chaffron; J. Cesar Ignacio-Espinosa; Simon Roux; Flora Vincent; Lucie Bittner; Youssef Darzi; Jun Wang; Stephane Audic; Leo Berline; Gianluca Bontempi; Ana M. Cabello; Laurent Coppola; Francisco M. Cornejo-Castillo; Francesco d'Ovidio; Luc De Meester; Isabel Ferrera; Marie-Jose Garet-Delmas; Lionel Guidi; Elena Lara; Stephane Pesant; Marta Royo-Llonch; Guillem Salazar; Pablo Sanchez; Marta Sebastian; Caroline Souffreau; Celine Dimier; Marc Picheral; Sarah Searson; Stefanie Kandels-Lewis; Gabriel Gorsky; Fabrice Not; Hiroyuki Ogata; Sabrina Speich; Lars Stemmann; Jean Weissenbach; Patrick Wincker; Silvia G. Acinas; Shinichi Sunagawa; Peer Bork; Matthew B. Sullivan; Eric Karsenti; Chris Bowler; Colomban de Vargas; Jeroen Raes; Silvia G. Acinas; Peer Bork; Emmanuel Boss; Chris Bowler; Colomban De Vargas; Michael Follows; Gabriel Gorsky; Nigel Grimsley; Pascal Hingamp; Daniele Iudicone; Olivier Jaillon; Stefanie Kandels-Lewis; Lee Karp-Boss; Eric Karsenti; Uros Krzic; Fabrice Not; Hiroyuki Ogata; Stephane Pesant; Jeroen Raes; Emmanuel G. Reynaud; Christian Sardet; Mike Sieracki; Sabrina Speich; Lars Stemmann; Matthew B. Sullivan; Shinichi Sunagawa; Didier Velayoudon; Jean Weissenbach; Patrick Wincker
SCIENCE, 2015年05月, 査読有り
Eukaryotic plankton diversity in the sunlit ocean
Colomban de Vargas; Stephane Audic; Nicolas Henry; Johan Decelle; Frederic Mahe; Ramiro Logares; Enrique Lara; Cedric Berney; Noan Le Bescot; Ian Probert; Margaux Carmichael; Julie Poulain; Sarah Romac; Sebastien Colin; Jean-Marc Aury; Lucie Bittner; Samuel Chaffron; Micah Dunthorn; Stefan Engelen; Olga Flegontova; Lionel Guidi; Ales Horak; Olivier Jaillon; Gipsi Lima-Mendez; Julius Lukes; Shruti Malviya; Raphael Morard; Matthieu Mulot; Eleonora Scalco; Raffaele Siano; Flora Vincent; Adriana Zingone; Celine Dimier; Marc Picheral; Sarah Searson; Stefanie Kandels-Lewis; Silvia G. Acinas; Peer Bork; Chris Bowler; Gabriel Gorsky; Nigel Grimsley; Pascal Hingamp; Daniele Iudicone; Fabrice Not; Hiroyuki Ogata; Stephane Pesant; Jeroen Raes; Michael E. Sieracki; Sabrina Speich; Lars Stemmann; Shinichi Sunagawa; Jean Weissenbach; Patrick Wincker; Eric Karsenti
SCIENCE, 2015年05月, 査読有り
Patterns and ecological drivers of ocean viral communities
Jennifer R. Brum; J. Cesar Ignacio-Espinoza; Simon Roux; Guilhem Doulcier; Silvia G. Acinas; Adriana Alberti; Samuel Chaffron; Corinne Cruaud; Colomban de Vargas; Josep M. Gasol; Gabriel Gorsky; Ann C. Gregory; Lionel Guidi; Pascal Hingamp; Daniele Iudicone; Fabrice Not; Hiroyuki Ogata; Stephane Pesant; Bonnie T. Poulos; Sarah M. Schwenck; Sabrina Speich; Celine Dimier; Stefanie Kandels-Lewis; Marc Picheral; Sarah Searson; Peer Bork; Chris Bowler; Shinichi Sunagawa; Patrick Wincker; Eric Karsenti; Matthew B. Sullivan
SCIENCE, 2015年05月, 査読有り
Environmental characteristics of Agulhas rings affect interocean plankton transport
Emilie Villar; Gregory K. Farrant; Michael Follows; Laurence Garczarek; Sabrina Speich; Stephane Audic; Lucie Bittner; Bruno Blanke; Jennifer R. Brum; Christophe Brunet; Raffaella Casotti; Alison Chase; John R. Dolan; Fabrizio d'Ortenzio; Jean-Pierre Gattuso; Nicolas Grima; Lionel Guidi; Christopher N. Hill; Oliver Jahn; Jean-Louis Jamet; Herve Le Goff; Cyrille Lepoivre; Shruti Malviya; Eric Pelletier; Jean-Baptiste Romagnan; Simon Roux; Sebastien Santini; Eleonora Scalco; Sarah M. Schwenck; Atsuko Tanaka; Pierre Testor; Thomas Vannier; Flora Vincent; Adriana Zingone; Celine Dimier; Marc Picheral; Sarah Searson; Stefanie Kandels-Lewis; Silvia G. Acinas; Peer Bork; Emmanuel Boss; Colomban de Vargas; Gabriel Gorsky; Hiroyuki Ogata; Stephane Pesant; Matthew B. Sullivan; Shinichi Sunagawa; Patrick Wincker; Eric Karsenti; Chris Bowler; Fabrice Not; Pascal Hingamp; Daniele Iudicone
SCIENCE, 2015年05月, 査読有り
Structure and function of the global ocean microbiome
Shinichi Sunagawa; Luis Pedro Coelho; Samuel Chaffron; Jens Roat Kultima; Karine Labadie; Guillem Salazar; Bardya Djahanschiri; Georg Zeller; Daniel R. Mende; Adriana Alberti; Francisco M. Cornejo-Castillo; Paul I. Costea; Corinne Cruaud; Francesco d'Ovidio; Stefan Engelen; Isabel Ferrera; Josep M. Gasol; Lionel Guidi; Falk Hildebrand; Florian Kokoszka; Cyrille Lepoivre; Gipsi Lima-Mendez; Julie Poulain; Bonnie T. Poulos; Marta Royo-Llonch; Hugo Sarmento; Sara Vieira-Silva; Celine Dimier; Marc Picheral; Sarah Searson; Stefanie Kandels-Lewis; Chris Bowler; Colomban de Vargas; Gabriel Gorsky; Nigel Grimsley; Pascal Hingamp; Daniele Iudicone; Olivier Jaillon; Fabrice Not; Hiroyuki Ogata; Stephane Pesant; Sabrina Speich; Lars Stemmann; Matthew B. Sullivan; Jean Weissenbach; Patrick Wincker; Eric Karsenti; Jeroen Raes; Silvia G. Acinas; Peer Bork
SCIENCE, 2015年05月, 査読有り
Characterisation of three novel giant viruses reveals huge diversity among viruses infecting Prymnesiales (Haptophyta)
Torill Vik Johannessen; Gunnar Bratbak; Aud Larsen; Hiroyuki Ogata; Elianne S. Egge; Bente Edvardsen; Wenche Eikrem; Ruth-Anne Sandaa
VIROLOGY, 2015年02月, 査読有り
A decade of giant virus genomics: Surprising discoveries opening new questions
Hiroyuki Ogata; Masaharu Takemura
Global Virology I-Identifying and Investigating Viral Diseases, 2015年01月01日, 査読有り
The 474-kilobase-pair complete genome sequence of CeV-01B, a virus infecting Haptolina (Chrysochromulina) ericina (Prymnesiophyceae)
Open science resources for the discovery and analysis of Tara Oceans data
Stephane Pesant; Fabrice Not; Marc Picheral; Stefanie Kandels-Lewis; Noan Le Bescot; Gabriel Gorsky; Daniele Iudicone; Eric Karsenti; Sabrina Speich; Romain Trouble; Celine Dimier; Sarah Searson
SCIENTIFIC DATA, 2015年, 査読有り
海洋巨大ウイルス―ゲノムから見えたきた多様性と生態
三原知子; 五斗進; 緒方博之
生物の科学 遺伝, 2015年
【特集にあたって】知られざるウイルスの世界をあばく
武村政春; 緒方博之
生物の科学 遺伝, 2015年
Prasinovirus distribution in the Northwest Mediterranean Sea is affected by the environment and particularly by phosphate availability
Camille Clerissi; Nigel Grimsley; Lucie Subirana; Eric Maria; Louise Oriol; Hiroyuki Ogata; Herve Moreau; Yves Desdevises
VIROLOGY, 2014年10月, 査読有り
Development of DNA mismatch repair gene, MutS, as a diagnostic marker for detection and phylogenetic analysis of algal Megaviruses
William H. Wilson; Ilana C. Gilg; Amy Duarte; Hiroyuki Ogata
VIROLOGY, 2014年10月, 査読有り
Metagenomic 16S rDNA Illumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities
Ramiro Logares; Shinichi Sunagawa; Guillem Salazar; Francisco M. Cornejo-Castillo; Isabel Ferrera; Hugo Sarmento; Pascal Hingamp; Hiroyuki Ogata; Colomban de Vargas; Gipsi Lima-Mendez; Jeroen Raes; Julie Poulain; Olivier Jaillon; Patrick Wincker; Stefanie Kandels-Lewis; Eric Karsenti; Peer Bork; Silvia G. Acinas
ENVIRONMENTAL MICROBIOLOGY, 2014年09月, 査読有り
Unveiling of the Diversity of Prasinoviruses (Phycodnaviridae) in Marine Samples by Using High-Throughput Sequencing Analyses of PCR-Amplified DNA Polymerase and Major Capsid Protein Genes
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2014年05月, 査読有り
Patterns of Rare and Abundant Marine Microbial Eukaryotes
Ramiro Logares; Stephane Audic; David Bass; Lucie Bittner; Christophe Boutte; Richard Christen; Jean-Michel Claverie; Johan Decelle; John R. Dolan; Micah Dunthorn; Bente Edvardsen; Angelique Gobet; Wiebe H. C. F. Kooistra; Frederic Mahe; Fabrice Not; Hiroyuki Ogata; Jan Pawlowski; Massimo C. Pernice; Sarah Romac; Kamran Shalchian-Tabrizi; Nathalie Simon; Thorsten Stoeck; Sebastien Santini; Raffaele Siano; Patrick Wincker; Adriana Zingone; Thomas A. Richards; Colomban de Vargas; Ramon Massana
CURRENT BIOLOGY, 2014年04月, 査読有り
巨大ウイルスがもたらしたパンドラの箱
緒方博之; 武村政春
生物の科学 遺伝, 2014年
Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes
Pan genome of the phytoplankton Emiliania underpins its global distribution
Betsy A. Read; Jessica Kegel; Mary J. Klute; Alan Kuo; Stephane C. Lefebvre; Florian Maumus; Christoph Mayer; John Miller; Adam Monier; Asaf Salamov; Jeremy Young; Maria Aguilar; Jean-Michel Claverie; Stephan Frickenhaus; Karina Gonzalez; Emily K. Herman; Yao-Cheng Lin; Johnathan Napier; Hiroyuki Ogata; Analissa F. Sarno; Jeremy Shmutz; Declan Schroeder; Colomban de Vargas; Frederic Verret; Peter von Dassow; Klaus Valentin; Yves Van de Peer; Glen Wheeler; Joel B. Dacks; Charles F. Delwiche; Sonya T. Dyhrman; Gernot Gloeckner; Uwe John; Thomas Richards; Alexandra Z. Worden; Xiaoyu Zhang; Igor V. Grigoriev; Andrew E. Allen; Kay Bidle; M. Borodovsky; C. Bowler; Colin Brownlee; J. Mark Cock; Marek Elias; Vadim N. Gladyshev; Marco Groth; Chittibabu Guda; Ahmad Hadaegh; Maria Debora Iglesias-Rodriguez; J. Jenkins; Bethan M. Jones; Tracy Lawson; Florian Leese; Erika Lindquist; Alexei Lobanov; Alexandre Lomsadze; Shehre-Banoo Malik; Mary E. Marsh; Luke Mackinder; Thomas Mock; Bernd Mueller-Roeber; Antonio Pagarete; Micaela Parker; Ian Probert; Hadi Quesneville; Christine Raines; Stefan A. Rensing; Diego Mauricio Riano-Pachon; Sophie Richier; Sebastian Rokitta; Yoshihiro Shiraiwa; Darren M. Soanes; Mark van der Giezen; Thomas M. Wahlund; Bryony Williams; Willie Wilson; Gordon Wolfe; Louie L. Wurch
NATURE, 2013年07月, 査読有り
Diversity patterns of uncultured Haptophytes unravelled by pyrosequencing in Naples Bay
Lucie Bittner; Angelique Gobet; Stephane Audic; Sarah Romac; Elianne S. Egge; Sebastien Santini; Hiroyuki Ogata; Ian Probert; Bente Edvardsen; Colomban De Vargas
MOLECULAR ECOLOGY, 2013年01月, 査読有り
Cyanophage Infection in the Bloom-Forming Cyanobacteria Microcystis aeruginosa in Surface Freshwater
Transcriptome analysis of functional differentiation between haploid and diploid cells of Emiliania huxleyi, a globally significant photosynthetic calcifying cell
Peter von Dassow; Hiroyuki Ogata; Ian Probert; Patrick Wincker; Corinne Da Silva; Stephane Audic; Jean-Michel Claverie; Colomban de Vargas
GENOME BIOLOGY, 2009年, 査読有り
Microbiology - How to infect a mimivirus
Hiroyuki Ogata; Jean-Michel Claverie
SCIENCE, 2008年09月, 査読有り
Ma-LMM01 infecting toxic Microcystis aeruginosa illuminates diverse cyanophage genome strategies
Introduction to GenomeNet Databases, 2nd edition, 1998年, 査読有り
A Survey on E. coli Enzymes: Correlation between Metabolic Pathway and Gene Location (MOLECULAR BIOLOGY AND INFORMATION-Biological Information Science)
Ogata Hiroyuki; Kanehisa Minoru
ICR annual report, 1997年, 査読有り
The size differences among mammalian introns are due to the accumulation of small deletions
H Ogata; W Fujibuchi; M Kanehisa
FEBS LETTERS, 1996年07月, 査読有り
Analysis of Binary Relations and Hierarchies of Enzymes in the Metabolic Pathways
Organizing and computing metabolic pathway data in terms of binary relations
S Goto; H Bono; H Ogata; W Fujibuchi; T Nishioka; K Sato; M Kanehisa
PACIFIC SYMPOSIUM ON BIOCOMPUTING '97, 1996年, 査読有り
タンパク質データベース利用による機能解析
緒方博之; 金久實
生物物理, 1996年, 査読有り
A GENETIC ALGORITHM-BASED MOLECULAR MODELING TECHNIQUE FOR RNA STEM-LOOP STRUCTURES
H OGATA; Y AKIYAMA; M KANEHISA
NUCLEIC ACIDS RESEARCH, 1995年02月, 査読有り
ホモロジーサーチ
緒方博之; 金久實
炎症と免疫, 1995年, 査読有り
A computer modeling method for three-dimensional structure of RNA.
Ogata H; Akiyama Y; Kanehisa M
Genome Informatics, 1993年, 査読有り
MISC
Viruses associated with the carbon export efficiency
Yang Q; Endo H; Ogata H
Greenocean workshop, 2022年05月
Translation Landscape of a giant virus.
Zhang R; Hikida H; Shichino Y; Mito M; Iwasaki S; Ogata H
Kyoto University Science Club Day 2022., 2022年11月21日
Spatio-temporal community genome dynamics of giant viruses in a deep lake uncovered by long-read metagenomics
Zhang L; Fang Y; Ogata H; Okazaki H
35th JSME annual meeting, 2022年11月
異なる系統に属するミミウイルス間の相互作用解析
疋田弘之; 緒方博之
微生物生態学会第35回大会, 2022年11月02日
Recurrent polar adaptations of giant viruses infecting eukaryotes
Meng L; Delmont T; Gaia M; Pelletier E; Fernàndez-Guerra A; Chaffron S; Wu J; Kaneko H; Endo H; Ogata H
35th JSME annual meeting, 2022年11月02日
Characterization of sinking microeukaryote communities in spring Oyashio waters
Yang Q; Yang Y; Fukuda H; Okazaki Y; Nagata T; Ogata H; Endo H
35th JSME annual meeting, 2022年11月02日
Horizontal and vertical profiling of plankton communities in the Eastern Indian Ocean
Liu W; Xia J; Hisashima F; Ogawa H; Ogata H; Endo H
35th JSME annual meeting, 2022年11月02日
海洋植物プランクトンの共生的相互作用が増殖動態に与える影響
遠藤 寿; 片岡 剛文; 緒方 博之
微生物生態学会第35回大会, 2022年11月02日
MMETSPデータベースにおけるコンタミネーションの包括的解析
伴 広輝; 岡崎 友輔; 遠藤 寿; 緒方 博之
微生物生態学会第35回大会, 2022年11月02日
Detection of horizontal gene transfers among giant viruses
Wu J; Meng L; Gaia M; Hikida H; Okazaki Y; Endo H; Ogata H
35th JSME annual meeting, 2022年11月02日
Phylogenomic Analysis to Define the Taxonomic Classification of Medusaviruses Isolated in Japan
Zhang R; Takemura M; Murata K; Ogata H
35th JSME annual meeting, 2022年11月02日
Temperature-dependent distributions of giant viruses infecting Micromonas
Demory D; Endo H; Ogata H
Luncheon Seminar at the Department of Biological Sciences, the University of Bergen, 2022年06月16日
Eco-evolutionary diversity of the global ocean microbiome across plankton size fraction.
Henry N; Galand P.E; Salazar G; Budinich M; Bachy C; Delage E; Câmara dos Reis M; Kaneko H; Gaudin M; Lombard F; Ogata H; Acinas S.G; Wincker P; Eveillard D; Sunagawa S; Chaffron S; Jeanthon C; de Vargas C
JOBIM2022, 2022年06月05日
The short-term variation of virus community in an enclosed bay of Japan
Xia J; Fang Y; Yang Q; Okazaki Y; Yoshida T; Nagasaki K; Hisashi E; Ogata H
35th JSME annual meeting, 2011年11月02日
巨大ウイルスの一種メドゥーサウイルス : そのゲノムならびに粒子構造に関する特殊性—Medusavirus, One of Giant Viruses : Its Genome and Particle Structure
武村 政春; 深谷 将; 緒方 博之; 村田 和義
化学と生物 : 日本農芸化学会会誌 : 生命・食・環境 / 日本農芸化学会 編, 2022年06月
Purification of Medusavirus stheno histone-like protein H3-H4 and the comparison with sister strain by kinetic analysis of infected cells
Kobayashi M; Matsumura K; Masuda R; Ogata H; Takemura M
第44回日本分子生物学会年会, 2022年12月
ナノポアシークエンスによる巨大ウイルスゲノムの解析手法評価
疋田 弘之; 岡﨑 友輔; 緒方 博之
第44回日本分子生物学会年会, 2022年12月
Rapid characterization of novel giant viruses using nanopore sequencing
PB-35 Genome analysis of cyanophage Ma-LMM01 infecting Microcystis aeruginosa. partIII : Analysis of transcriptional control region and temporal gene transcription(Genetic analysis,Poster presentation B) :
Takashima Yukari; Yoshida Takashi; Yoshida Mitsuhiro; Hiroishi Shingo; Ogata Hiroyuki; Nagasaki Keizo
日本微生物生態学会講演要旨集, 2007年
PB-34 Expression and characterization of lytic enzyme from Microcystis aeruginosa infecting cyanophage Ma-LMM01(Genetic analysis,Poster presentation B) :
Macroscale patterns of oceanic zooplankton composition and size structure
Manoela C. Brandão; Fabio Benedetti; Séverine Martini; Yawouvi Dodji Soviadan; Jean-Olivier Irisson; Jean-Baptiste Romagnan; Amanda Elineau; Corinne Desnos; Laëtitia Jalabert; Andrea S. Freire; Marc Picheral; Lionel Guidi; Gabriel Gorsky; Chris Bowler; Lee Karp-Boss; Nicolas Henry; Colomban de Vargas; Matthew B. Sullivan; Silvia G. Acinas; Marcel Babin; Peer Bork; Emmanuel Boss; Chris Bowler; Guy Cochrane; Colomban de Vargas; Gabriel Gorsky; Lionel Guidi; Nigel Grimsley; Pascal Hingamp; Daniele Iudicone; Olivier Jaillon; Stefanie Kandels; Lee Karp-Boss; Eric Karsenti; Fabrice Not; Hiroyuki Ogata; Nicole Poulton; Stephane Pesant; Jeroen Raes; Christian Sardet; Sabrina Speich; Lars Stemmann; Matthew B. Sullivan; Shinichi Sunagawa; Patrick Wincker; Lars Stemmann; Fabien Lombard
Scientific Reports, 2021年12月
Deep ocean metagenomes provide insight into the metabolic architecture of bathypelagic microbial communities
Silvia G. Acinas; Pablo Sánchez; Guillem Salazar; Francisco M. Cornejo-Castillo; Marta Sebastián; Ramiro Logares; Marta Royo-Llonch; Lucas Paoli; Shinichi Sunagawa; Pascal Hingamp; Hiroyuki Ogata; Gipsi Lima-Mendez; Simon Roux; José M. González; Jesús M. Arrieta; Intikhab S. Alam; Allan Kamau; Chris Bowler; Jeroen Raes; Stéphane Pesant; Peer Bork; Susana Agustí; Takashi Gojobori; Dolors Vaqué; Matthew B. Sullivan; Carlos Pedrós-Alió; Ramon Massana; Carlos M. Duarte; Josep M. Gasol
Communications Biology, 2021年12月
Environmental vulnerability of the global ocean epipelagic plankton community interactome
Samuel Chaffron; Erwan Delage; Marko Budinich; Damien Vintache; Nicolas Henry; Charlotte Nef; Mathieu Ardyna; Ahmed A. Zayed; Pedro C. Junger; Pierre E. Galand; Connie Lovejoy; Alison E. Murray; Hugo Sarmento; Silvia G. Acinas; Marcel Babin; Daniele Iudicone; Olivier Jaillon; Eric Karsenti; Patrick Wincker; Lee Karp-Boss; Matthew B. Sullivan; Chris Bowler; Colomban de Vargas; Damien Eveillard
Science Advances, 2021年08月
Integrative analysis of gut microbiome and host transcriptomes reveals associations between treatment outcomes and immunotherapy‐induced colitis
Toshiharu Sakurai; Marco A De Velasco; Kazuko Sakai; Tomoyuki Nagai; Hiroki Nishiyama; Kentaro Hashimoto; Hirotsugu Uemura; Hisato Kawakami; Kazuhiko Nakagawa; Hiroyuki Ogata; Kazuto Nishio; Masatoshi Kudo
Molecular Oncology, 2021年07月28日
Myosin genes in NCLDVs: their complex origins and putative functions
Soichiro Kijima; Tom O Delmont; Urara Miyazaki; Morgan Gaia; Hisashi Endo; Hiroyuki Ogata
Aquatic Virus Workshop 10, 2021年06月
Recombination between genomes of giant virus Marseilleviridae
Biomarker discovery based on diversity analysis, decision tree and functional analysis between patients with nivolumab-derived irAE colitis and ulcerative colitis
橋本謙太郎; 西山拓輝; 永井知行; 櫻井俊治; 緒方博之
第43回日本分子生物学会年会(MBSJ2020), 2020年12月
Genome recombination between giant viruses isolated in Japan
Garcia K; Yoshida K; Aoki K; Endo H; Takemura M; Ogata H. Shuffling Giants
第43回日本分子生物学会年会(MBSJ2020), 2020年12月
Medusavirus Transcriptome Analysis Reveals Temporal Gene Expression Patterns and Alteration of Host Transcriptional Landscape
Zhang R; Endo H; Takemura M; Ogata H
第43回日本分子生物学会年会(MBSJ2020), 2020年12月
ニボルマブ由来のirAE大腸炎患者と潰瘍性大腸炎患者間における腸内細菌叢の比較解析
橋本謙太郎; 西山拓輝; 櫻井俊治; 永井知行; 緒方博之
第9回生命医薬情報学連合大会(IIMBP2020), 2020年09月
深層学習を利用した人工衛星によるリモートセンシングに基づく海洋微生物組成予測法の開発
金子博人; 富井健太郎; 中村良介; 遠藤寿; 緒方博之
第9回生命医薬情報学連合大会(IIBMP2020), 2020年09月
Medusavirus transcriptome & the genome characterization of a new medusavirus strain.
Zhang R; Yoshida K; Garcia K; Endo H; Takemura M; Ogata H
JSME Environmental Virus Meeting 2020, 2020年09月
Discovery of virmyosin of NCLDV and Analysis of its phylogeny.
Marine viral genomics: from genetic diversity to ecological implications.
Ogata H
Sweden-Kyoto Symposium(2014/9/11-12), 2014年09月02日, Stockholm University/Karolinska Institute, Stockholm, 招待有り
Recent bioinformatics development in quantitative metagenomics.
Ogata H
The 3rd International Seminar on Biodiversity and Evolution (June 6, 2014, Kyoto Kyoiku Bunka Center, Kyoto, Oral presentation), 2014年06月06日, Kyoto, 招待有り
Giruses in the Ocean: from diversity to their ecological significance (in Japanese).
Ogata H
Annual meeting of the Sciety of Genome Microbiology Japan - Symposium 1(2014/3/7-9), 2014年03月08日, Tokyo University of Agriculture, Tokyo, 招待有り
Quantifying large DNA viruses in marine ecosystems.
Ogata H
Ocean Science Meeting 2014, Session 075(2014/2/23−28), 2014年02月25日, Hawai, USA
Giant viruses: a unique entry to the natural diversity of DNA processing genes.
Ogata H
Second Bioscience and Biotechnology International Symposium: The Nucleic Acid World - Interface between Biology and Chemistry., 2014年01月29日, Suzukakedai Campus, Tokyo Institute of Technology., Yokohama, 招待有り
Quantifying nucleo-cytoplasmic large DNA viruses in marine ecosystems.
Ogata H
International Symposium on Giant Virus Biology(2013/11/17-20), 2013年11月19日, Ringberg Castle, Tegernsee, Germany, 招待有り
Richness of NCLDV genes.
Ogata H
Tara-Oceans Biodiversity Workshop, ENS, Paris(2013/7/4−5), 2013年07月05日, Paris, France
The big viruses in marine environments.
Ogata H
Seminar at Nakai laboratory, Tokyo Univ., Tokyo, 2013年02月12日, Tokyo
The wonder world of small giants in the sea.
Ogata H
Lecture at Tokyo Institute of Technology, Tokyo, 2012年06月14日, Ookayama, Tokyo, 招待有り
Giant viruses in marine environments.
Ogata H
Tara Japan Tour(2012/2/11-19), 2012年02月17日, Feb 11-19; JAMSTEC, Yokosuka, Feb-13; Kyoto Univ., Kyoto, Feb-14; National Research Institute of Fisheries and Environment of Inland Sea, Fisheries Research Agency, Hiroshima
Diversity of DNA informational proteins originating from viruses.
Ogata H
Aquatic Virus Workshop 6(2011/10/30-11/3), 2011年11月02日, Texel, The Netherlands
The girus gene pool.
Ogata H
ANR/ARP workshop: International conference on the Viruses of the Environement(2011/3/22-23), 2011年03月23日, Heidelberg, Germany, 招待有り
Genomics and metagenomics of marine giruses.
Ogata H
ANR/ARP workshop: Combining high througput genomics, quantitative imaging, in situ oceanographic and satellite data and modeling to better understand plankton ecosystems at the planetary level(2011/1/10-11), 2011年01月11日, Villefranche, France, 招待有り
Mimivirus and other giants of the virus world.
Ogata H
Fourth European Congress of Virology(2010/44/7-11), 2010年04月07日, Cernobbio, Italy, 招待有り
Novel metabarcoding method reveals pronounced seasonality and high turnover rate of Imitervirales in coastal communities(新規メタバーコーディング法が明かす沿岸域イミテルウイルス群集の明瞭な季節変動と速い遷移速度)
Florian Prodinger, 理学研究科, 主査
2022年05月23日
Genome analysis of the planarian Dugesia japonica(プラナリアDugesia japonicaゲノムの解析)
安 洋, 副査
2015年03月23日
Development of computational analysis tools for natural products research and metabolomics(天然物科学およびメタボロミクスのための計算解析ツールの開発)
AHMED MOHAMED MOHAMED, 副査
2016年03月23日
Computational Framework for the Dissection of Cancer Genomic Architecture and its Association in Different Biomarkers(がんゲノム構造およびその複数バイオマーカーの関連を解明するための計算論的アプローチ)
Peak identification and quantification in proteomic mass spectrograms using non-negative matrix factorization(プロテオミクスにおける非負値行列因子分解法によるマススペクトログラムピークの同定および定量)
TAECHAWATTANANANT PASRAWIN, 副査
2020年05月25日
Machine Learning for Metabolite Identification with Mass Spectrometry Data(質量分析データによる代謝産物識別のための機械学習手法構築)